assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900638095.1_56089_C02	LR134488	Pasteurella multocida strain NCTC8282 genome assembly, chromosome: 1	1	32043-34786	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2	cas9,cas1,cas2,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,WYL,DEDDh,DinG,cas3-cas2,cas6f,cas7f,cas5f,cas8f,cas3	Type II-B,Type II-C,Type II-A, Type II-B, or Type II-C?	ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC,ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC,ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	36,36,36	2	2	32277-32306|33135-33164	LR134488.1_814894-814923|LR134488.1_744574-744545	NA:NA:NA	41,41,41	41	TypeII-C,TypeII-B,TypeII-A,TypeII-B,orTypeII-C?	cas9,cas1,cas2,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,WYL,DEDDh,DinG,cas3-cas2,cas6f,cas7f,cas5f,cas8f,cas3	NA,NA|86aa|down_0|LR134488.1_35593_35851_-,NA|127aa|down_4|LR134488.1_39699_40080_-	NA|404aa|up_9|LR134488.1_20054_21266_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|144aa|up_8|LR134488.1_21293_21725_+	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms]	NA|1045aa|up_7|LR134488.1_21746_24881_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|356aa|up_6|LR134488.1_24954_26022_-	pfam01594, AI-2E_transport, AI-2E family transporter	NA|117aa|up_5|LR134488.1_26101_26452_+	TIGR00014, Putative_arsenate_reductase	NA|93aa|up_4|LR134488.1_26526_26805_+	COG3036, COG3036, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|up_3|LR134488.1_26809_27103_+	pfam17347, DUF5377, Family of unknown function (DUF5377)	cas9|1057aa|up_2|LR134488.1_27330_30501_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|305aa|up_1|LR134488.1_30551_31466_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|109aa|up_0|LR134488.1_31458_31785_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|86aa|down_0|LR134488.1_35593_35851_-	NA	NA|210aa|down_1|LR134488.1_35882_36512_-	pfam07996, T4SS, Type IV secretion system proteins	NA|75aa|down_2|LR134488.1_36836_37061_+	COG5645, COG5645, Predicted periplasmic lipoprotein [General function prediction only]	NA|672aa|down_3|LR134488.1_37069_39085_+	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep	NA|127aa|down_4|LR134488.1_39699_40080_-	NA	NA|200aa|down_5|LR134488.1_40201_40801_+	PRK10725, PRK10725, fructose-1-phosphate/6-phosphogluconate phosphatase	NA|160aa|down_6|LR134488.1_40829_41309_+	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|169aa|down_7|LR134488.1_41500_42007_+	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|394aa|down_8|LR134488.1_42056_43238_+	PRK09288, purT, formate-dependent phosphoribosylglycinamide formyltransferase	NA|156aa|down_9|LR134488.1_43307_43775_-	PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed
GCA_900638095.1_56089_C02	LR134488	Pasteurella multocida strain NCTC8282 genome assembly, chromosome: 1	2	36529-36683	2	CRISPRCasFinder	no	cas9,cas1,cas2	cas9,cas1,cas2,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,WYL,DEDDh,DinG,cas3-cas2,cas6f,cas7f,cas5f,cas8f,cas3	Type II-B,Type II-C,Type II-A, Type II-B, or Type II-C?	ATTGTAGCACTGCGAAATGAGAG	23	0	0	NA	NA	NA	2	2	TypeII-C,TypeII-B,TypeII-A,TypeII-B,orTypeII-C?	cas9,cas1,cas2,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,WYL,DEDDh,DinG,cas3-cas2,cas6f,cas7f,cas5f,cas8f,cas3	NA|86aa|up_1|LR134488.1_35593_35851_-,NA|127aa|down_2|LR134488.1_39699_40080_-	NA|1045aa|up_9|LR134488.1_21746_24881_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|356aa|up_8|LR134488.1_24954_26022_-	pfam01594, AI-2E_transport, AI-2E family transporter	NA|117aa|up_7|LR134488.1_26101_26452_+	TIGR00014, Putative_arsenate_reductase	NA|93aa|up_6|LR134488.1_26526_26805_+	COG3036, COG3036, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|up_5|LR134488.1_26809_27103_+	pfam17347, DUF5377, Family of unknown function (DUF5377)	cas9|1057aa|up_4|LR134488.1_27330_30501_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|305aa|up_3|LR134488.1_30551_31466_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|109aa|up_2|LR134488.1_31458_31785_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|86aa|up_1|LR134488.1_35593_35851_-	NA	NA|210aa|up_0|LR134488.1_35882_36512_-	pfam07996, T4SS, Type IV secretion system proteins	NA|75aa|down_0|LR134488.1_36836_37061_+	COG5645, COG5645, Predicted periplasmic lipoprotein [General function prediction only]	NA|672aa|down_1|LR134488.1_37069_39085_+	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep	NA|127aa|down_2|LR134488.1_39699_40080_-	NA	NA|200aa|down_3|LR134488.1_40201_40801_+	PRK10725, PRK10725, fructose-1-phosphate/6-phosphogluconate phosphatase	NA|160aa|down_4|LR134488.1_40829_41309_+	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|169aa|down_5|LR134488.1_41500_42007_+	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|394aa|down_6|LR134488.1_42056_43238_+	PRK09288, purT, formate-dependent phosphoribosylglycinamide formyltransferase	NA|156aa|down_7|LR134488.1_43307_43775_-	PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed	NA|299aa|down_8|LR134488.1_43949_44846_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|336aa|down_9|LR134488.1_44959_45967_+	COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
GCA_900638095.1_56089_C02	LR134488	Pasteurella multocida strain NCTC8282 genome assembly, chromosome: 1	3	587112-589866	3,2,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10	cas9,cas1,cas2,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,WYL,DEDDh,DinG,cas3-cas2,cas6f,cas7f,cas5f,cas8f,cas3	Type III-C,Type III-A,Type III-B,Type III-D	GTCTCAATCCCTTTGGAACAGGGCTATGTCTTTCGAC,GTCTCAATCCCTTTGGAACAGGGCTATGTCTTTCGAC,GTCTCAATCCCTTTGGAACAGGGCTATGTCTTTCGAC,GTCTCAATCCCTTTGGAACAGGGCTATGTCTTTCGAC	37,37,37,37	0	0	NA	NA	NA:NA:NA:NA	38,38,37,37	38	TypeIII-C,TypeIII-A,TypeIII-B,TypeIII-D	cas9,cas1,cas2,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,WYL,DEDDh,DinG,cas3-cas2,cas6f,cas7f,cas5f,cas8f,cas3	NA|257aa|up_9|LR134488.1_574340_575111_-,NA|304aa|down_0|LR134488.1_590041_590953_-,NA|149aa|down_1|LR134488.1_590998_591445_-	NA|257aa|up_9|LR134488.1_574340_575111_-	NA	NA|136aa|up_8|LR134488.1_575323_575731_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|307aa|up_7|LR134488.1_575730_576651_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|832aa|up_6|LR134488.1_576732_579228_-	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|396aa|up_5|LR134488.1_579436_580624_-	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|1114aa|up_4|LR134488.1_580886_584228_+	pfam00593, TonB_dep_Rec, TonB dependent receptor	NA|246aa|up_3|LR134488.1_584453_585191_-	PRK00347, PRK00347, DNA/RNA nuclease SfsA	cas2|96aa|up_2|LR134488.1_585346_585634_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas1|357aa|up_1|LR134488.1_585642_586713_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|94aa|up_0|LR134488.1_586731_587013_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|304aa|down_0|LR134488.1_590041_590953_-	NA	NA|149aa|down_1|LR134488.1_590998_591445_-	NA	csx1|374aa|down_2|LR134488.1_591585_592707_-	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	csx1|393aa|down_3|LR134488.1_592706_593885_-	pfam09002, DUF1887, Domain of unknown function (DUF1887)	csx16|97aa|down_4|LR134488.1_593895_594186_-	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548)	cas6|306aa|down_5|LR134488.1_594265_595183_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	csm5gr7|514aa|down_6|LR134488.1_595185_596727_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|312aa|down_7|LR134488.1_596731_597667_-	TIGR01903, Hypothetical_protein	csm3gr7|235aa|down_8|LR134488.1_597676_598381_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|132aa|down_9|LR134488.1_598404_598800_-	pfam03750, Csm2_III-A, Csm2 Type III-A
GCA_900638095.1_56089_C02	LR134488	Pasteurella multocida strain NCTC8282 genome assembly, chromosome: 1	4	1417996-1420486	4,3,4	CRISPRCasFinder,CRT,PILER-CR	no	cas3-cas2,cas1,cas6f,cas7f,cas5f,cas8f	cas9,cas1,cas2,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,WYL,DEDDh,DinG,cas3-cas2,cas6f,cas7f,cas5f,cas8f,cas3	Type I-F	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	41,41,40	41	TypeI-F	cas9,cas1,cas2,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,WYL,DEDDh,DinG,cas3-cas2,cas6f,cas7f,cas5f,cas8f,cas3	NA|49aa|up_9|LR134488.1_1401267_1401414_-,NA	NA|49aa|up_9|LR134488.1_1401267_1401414_-	NA	NA|486aa|up_8|LR134488.1_1401430_1402888_-	PRK10859, PRK10859, membrane-bound lytic murein transglycosylase MltF	NA|611aa|up_7|LR134488.1_1403043_1404876_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|300aa|up_6|LR134488.1_1404977_1405877_-	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|715aa|up_5|LR134488.1_1405965_1408110_-	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|481aa|up_4|LR134488.1_1408559_1410002_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|263aa|up_3|LR134488.1_1410749_1411538_+	COG3774, OCH1, Mannosyltransferase OCH1 and related enzymes [Cell envelope biogenesis, outer membrane]	NA|618aa|up_2|LR134488.1_1411622_1413476_-	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	cas3-cas2|1109aa|up_1|LR134488.1_1413610_1416937_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|327aa|up_0|LR134488.1_1416917_1417898_-	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1	cas6f|187aa|down_0|LR134488.1_1420627_1421188_-	TIGR02563, conserved_hypothetical_protein, CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST	cas7f|335aa|down_1|LR134488.1_1421190_1422195_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|328aa|down_2|LR134488.1_1422197_1423181_-	TIGR02565, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy2	cas8f|449aa|down_3|LR134488.1_1423190_1424537_-	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1	NA|721aa|down_4|LR134488.1_1424794_1426957_-	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA|458aa|down_5|LR134488.1_1427179_1428553_+	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|683aa|down_6|LR134488.1_1428624_1430673_-	PRK00133, metG, methionyl-tRNA synthetase; Reviewed	NA|371aa|down_7|LR134488.1_1430849_1431962_+	PRK11670, PRK11670, iron-sulfur cluster carrier protein ApbC	NA|270aa|down_8|LR134488.1_1437742_1438552_-	PRK00865, PRK00865, glutamate racemase; Provisional	NA|171aa|down_9|LR134488.1_1438548_1439061_-	pfam04345, Chor_lyase, Chorismate lyase
