The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134522	Neisseria meningitidis strain NCTC3372 genome assembly, chromosome: 1	2182188	169241	231343	2182188	transposase,protease,tRNA	Staphylococcus_phage(20.0%)	56	NA	NA
VEJ31396.1|169241_170741_-|protease	serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	32.2	4.9e-25
VEJ31397.1|170878_171508_-	endonuclease III	NA	NA	NA	NA	NA
VEJ31398.1|171553_171967_-	membrane protein	NA	NA	NA	NA	NA
VEJ31399.1|172556_173780_+	sugar transporter	NA	NA	NA	NA	NA
VEJ31400.1|174070_175450_+	NhaC	NA	NA	NA	NA	NA
VEJ31401.1|175578_176403_-	Magnesium and cobalt transporter	NA	NA	NA	NA	NA
VEJ31402.1|176404_176920_-|protease	putative metalloprotease NMB0538	protease	NA	NA	NA	NA
VEJ31403.1|177038_177974_+	porphobilinogen deaminase	NA	NA	NA	NA	NA
VEJ31404.1|178480_179188_-	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
VEJ31405.1|179281_179674_-	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
VEJ31406.1|179755_180253_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ31407.1|180368_180572_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEJ31408.1|180739_182326_-	L-lactate permease	NA	NA	NA	NA	NA
VEJ31409.1|182594_183317_-	UDP-2,3-diacylglucosamine hydrolase	NA	NA	NA	NA	NA
VEJ31410.1|183565_187051_+	SMC protein	NA	NA	NA	NA	NA
VEJ31411.1|187401_188274_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
VEJ31412.1|188222_188447_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
VEJ31413.1|188729_189119_-	pilin	NA	NA	NA	NA	NA
VEJ31414.1|189344_190523_+	ABC transporter periplasmic protein	NA	A0A140XAI1	Dickeya_phage	58.3	5.2e-06
VEJ31415.1|190588_192523_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.1	9.4e-37
VEJ31416.1|192938_193721_-	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
VEJ31417.1|193859_196049_+	primosome assembly protein PriA	NA	NA	NA	NA	NA
VEJ31418.1|196095_197199_-	integral membrane protein	NA	NA	NA	NA	NA
VEJ31419.1|197216_198056_-|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	34.0	5.0e-27
VEJ31420.1|198146_199097_-|transposase	IS1106 transposase	transposase	NA	NA	NA	NA
VEJ31421.1|200163_202092_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	51.6	9.0e-149
VEJ31422.1|202299_202572_-	putative secreted protein	NA	NA	NA	NA	NA
VEJ31423.1|202757_203444_+	transcriptional regulator	NA	A5X9F5	Aeromonas_virus	36.4	6.3e-28
VEJ31424.1|203575_203914_+	Putative iron-sulfur cluster insertion protein erpA	NA	A0A2H4N7M3	Lake_Baikal_phage	53.7	4.4e-27
VEJ31425.1|204073_204538_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ31426.1|204572_206084_+	putative ubiquinone biosynthesis protein UbiB	NA	M4QMK7	Micromonas_pusilla_virus	32.9	3.0e-38
VEJ31427.1|206440_207259_-	protein CysE	NA	NA	NA	NA	NA
VEJ31428.1|207442_208021_+	heat shock protein GrpE	NA	NA	NA	NA	NA
VEJ31429.1|208144_208360_-	Periplasmic protein	NA	NA	NA	NA	NA
VEJ31430.1|208385_209441_-	ApbE protein	NA	NA	NA	NA	NA
VEJ31431.1|209593_210811_-	Na(+)-translocating NADH-quinone reductase subunit F	NA	NA	NA	NA	NA
VEJ31432.1|210824_211418_-	Na(+)-translocating NADH-quinone reductase subunit E	NA	NA	NA	NA	NA
VEJ31433.1|211421_212048_-	Na(+)-translocating NADH-quinone reductase subunit D	NA	NA	NA	NA	NA
VEJ31434.1|212047_212824_-	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA	NA
VEJ31435.1|212816_214049_-	Na(+)-translocating NADH-quinone reductase subunit B	NA	NA	NA	NA	NA
VEJ31436.1|214051_215395_-	Na(+)-translocating NADH-quinone reductase subunit A	NA	NA	NA	NA	NA
VEJ31437.1|215742_217164_-	membrane protein	NA	NA	NA	NA	NA
VEJ31438.1|217521_217881_-	Membrane protein	NA	NA	NA	NA	NA
VEJ31439.1|217877_218474_-	Protein of uncharacterised function (DUF1415)	NA	NA	NA	NA	NA
VEJ31440.1|218529_219012_-	leucine-responsive regulatory protein	NA	NA	NA	NA	NA
VEJ31441.1|219523_220624_+	glycine cleavage system aminomethyltransferase T	NA	NA	NA	NA	NA
VEJ31442.1|220786_221173_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
VEJ31443.1|221324_222572_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
VEJ31444.1|222898_223420_+	regulatory protein	NA	NA	NA	NA	NA
VEJ31445.1|223488_224508_+	periplasmic copper-binding transport system protein	NA	NA	NA	NA	NA
VEJ31446.1|224565_225186_+	putative ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.1	3.2e-23
VEJ31447.1|225403_225898_+	dissimilatory nitrous oxide reduction protein, lipoprotein	NA	NA	NA	NA	NA
VEJ31448.1|225985_227647_-	electron transfer flavoprotein-ubiquinone oxidoreductase	NA	NA	NA	NA	NA
VEJ31449.1|227776_228190_-	putative peptidase	NA	NA	NA	NA	NA
VEJ31450.1|229192_230158_+|transposase	transposase for IS1655	transposase	W5R8L2	Staphylococcus_phage	35.1	2.3e-36
VEJ31451.1|230689_231343_-|transposase	insertion element IS1016 transposase	transposase	NA	NA	NA	NA
>prophage 2
LR134522	Neisseria meningitidis strain NCTC3372 genome assembly, chromosome: 1	2182188	605176	632471	2182188	transposase,tRNA,integrase	Pseudomonas_phage(33.33%)	35	604613:604628	634950:634965
604613:604628	attL	TTTCAGACGGCATTTT	NA	NA	NA	NA
VEJ31827.1|605176_606133_+|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	34.4	1.9e-27
VEJ31828.1|606286_606721_+	E16-like protein	NA	L7P7R1	Pseudomonas_phage	40.8	6.8e-20
VEJ31829.1|606701_607130_+	phage related protein	NA	A0A0M3LRS6	Mannheimia_phage	40.4	2.1e-21
VEJ31830.1|607437_607983_+	N-acetylmuramoyl-L-alanine amidase	NA	U5PZX6	Acinetobacter_phage	49.2	1.5e-37
VEJ31831.1|608188_608353_+	phage protein	NA	NA	NA	NA	NA
VEJ31832.1|608355_608592_+	phage protein	NA	NA	NA	NA	NA
VEJ31833.1|608563_608983_+	putative phage associated membrane protein	NA	NA	NA	NA	NA
VEJ31834.1|609002_609185_+	phage protein	NA	NA	NA	NA	NA
VEJ31835.1|609229_609400_-	phage protein	NA	NA	NA	NA	NA
VEJ31836.1|609412_609631_+	phage protein	NA	NA	NA	NA	NA
VEJ31837.1|609627_609966_+	phage protein	NA	NA	NA	NA	NA
VEJ31838.1|609977_610244_+	phage protein	NA	NA	NA	NA	NA
VEJ31839.1|610240_610438_+	phage protein	NA	NA	NA	NA	NA
VEJ31840.1|610440_610947_+	phage protein	NA	I6PBD1	Pseudomonas_phage	51.2	2.4e-40
VEJ31841.1|610943_611258_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ31842.1|611269_612277_-|transposase	IS1106A3 transposase	transposase	NA	NA	NA	NA
VEJ31843.1|612409_614188_-	autotransporter NhhA	NA	NA	NA	NA	NA
VEJ31844.1|616131_616302_-	rebredoxin	NA	NA	NA	NA	NA
VEJ31845.1|616759_617851_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
VEJ31846.1|617985_618534_-	macrophage infectivity potentiator-related protein	NA	NA	NA	NA	NA
VEJ31847.1|618688_619060_-	putative lipoprotein	NA	NA	NA	NA	NA
VEJ31848.1|619354_621046_-	D-lactate dehydrogenase	NA	NA	NA	NA	NA
VEJ31849.1|621570_625404_+	putative oxidoreductase	NA	NA	NA	NA	NA
VEJ31850.1|625480_626482_+|tRNA	tRNA-dihydrouridine synthase C	tRNA	NA	NA	NA	NA
VEJ31851.1|626531_626714_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ31852.1|627311_627983_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ31853.1|627787_628303_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ31854.1|628324_628918_-|transposase	transposase	transposase	NA	NA	NA	NA
VEJ31855.1|629027_629276_-|transposase	transposase	transposase	NA	NA	NA	NA
VEJ31856.1|629304_629598_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ31857.1|629636_629840_+	phage associated protein	NA	NA	NA	NA	NA
VEJ31858.1|629931_630816_+|transposase	IS1106 transposase	transposase	NA	NA	NA	NA
VEJ31859.1|631080_631578_-	phage associated protein	NA	NA	NA	NA	NA
VEJ31860.1|631615_631819_-	phage associated protein	NA	NA	NA	NA	NA
VEJ31861.1|631898_632471_-|integrase	phage integrase	integrase	B7SYF8	Stenotrophomonas_phage	36.2	1.1e-09
634950:634965	attR	AAAATGCCGTCTGAAA	NA	NA	NA	NA
>prophage 3
LR134522	Neisseria meningitidis strain NCTC3372 genome assembly, chromosome: 1	2182188	638077	685527	2182188	transposase	Streptococcus_phage(14.29%)	47	NA	NA
VEJ31871.1|638077_638827_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	42.2	7.5e-51
VEJ31872.1|639572_640178_-	putative Smr-like protein	NA	NA	NA	NA	NA
VEJ31873.1|640944_641895_-|transposase	IS1106 transposase	transposase	NA	NA	NA	NA
VEJ31874.1|641909_642455_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ31875.1|642607_642913_-|transposase	IS1106 transposase	transposase	NA	NA	NA	NA
VEJ31876.1|642909_643230_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ31877.1|643226_644282_-	sulfate-binding protein	NA	NA	NA	NA	NA
VEJ31878.1|644387_644870_-	putative acetyltransferase	NA	NA	NA	NA	NA
VEJ31879.1|644916_646053_-	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA	NA
VEJ31880.1|646049_646595_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEJ31881.1|646591_648214_-	anthranilate synthase component I	NA	NA	NA	NA	NA
VEJ31882.1|648177_648543_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ31883.1|648563_650474_-	putative ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.7	2.6e-55
VEJ31884.1|650492_651137_-	DedA protein	NA	NA	NA	NA	NA
VEJ31885.1|651300_652119_-	outer membrane protein	NA	NA	NA	NA	NA
VEJ31886.1|652705_653266_-|transposase	ISNme1 transposase (contains a 35 aa insertion)	transposase	NA	NA	NA	NA
VEJ31887.1|653423_653966_+|transposase	IS1106 transposase	transposase	NA	NA	NA	NA
VEJ31888.1|654092_654431_+|transposase	IS1106 transposase (fragment)	transposase	NA	NA	NA	NA
VEJ31889.1|654342_655029_-|transposase	IS1106 transposase	transposase	NA	NA	NA	NA
VEJ31890.1|655156_656407_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	4.3e-99
VEJ31891.1|656887_658663_-	gamma-glutamyltranspeptidase	NA	Q5GF27	Diachasmimorpha_longicaudata_entomopoxvirus	28.7	6.6e-05
VEJ31892.1|659434_659653_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEJ31893.1|659811_660786_-	fructose-1,6-bisphosphatase	NA	A0A1V0SEY8	Hokovirus	30.3	9.5e-30
VEJ31894.1|661031_661877_-	putative competence protein ComJ	NA	NA	NA	NA	NA
VEJ31895.1|661964_662567_-	integral membrane protein	NA	NA	NA	NA	NA
VEJ31896.1|662622_662979_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
VEJ31897.1|663012_663549_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
VEJ31898.1|664204_664564_-	putative CrcB-like protein	NA	A0A2H4J148	uncultured_Caudovirales_phage	45.5	9.6e-12
VEJ31899.1|664592_665273_-	membrane protein	NA	NA	NA	NA	NA
VEJ31900.1|665437_668482_+	putative cell-division protein	NA	G1FGP1	Mycobacterium_phage	48.7	1.6e-83
VEJ31901.1|668706_669969_-	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	62.9	4.7e-138
VEJ31902.1|669981_671091_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.7	1.7e-112
VEJ31903.1|671336_673130_+	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	26.9	1.2e-09
VEJ31904.1|673329_673992_+	yecA family protein	NA	G9E3U3	Emiliania_huxleyi_virus	40.3	7.2e-05
VEJ31905.1|674074_674926_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
VEJ31906.1|674996_676127_-	carboxypeptidase	NA	NA	NA	NA	NA
VEJ31907.1|676296_677193_+	acetylglutamate kinase	NA	NA	NA	NA	NA
VEJ31908.1|677826_678075_-	membrane protein	NA	NA	NA	NA	NA
VEJ31909.1|678391_678625_-	putative ubiquitin-activating enzyme E1 family protein	NA	NA	NA	NA	NA
VEJ31910.1|678629_679298_-	putative hydrolase	NA	NA	NA	NA	NA
VEJ31911.1|679294_679963_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
VEJ31912.1|680067_680619_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.1	6.4e-07
VEJ31913.1|680861_681047_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ31914.1|681242_682124_-	putative DNA-binding phage protein	NA	NA	NA	NA	NA
VEJ31915.1|682171_682423_+	putative DNA-binding phage protein	NA	NA	NA	NA	NA
VEJ31916.1|682424_684398_+|transposase	bacteriophage transposase	transposase	A0A0M3LPN5	Mannheimia_phage	41.9	3.2e-117
VEJ31917.1|684612_685527_+|transposase	phage transposase	transposase	A0A2D1GNS0	Pseudomonas_phage	41.8	1.0e-57
>prophage 4
LR134522	Neisseria meningitidis strain NCTC3372 genome assembly, chromosome: 1	2182188	691736	716098	2182188	transposase,plate,tail	Haemophilus_phage(42.11%)	30	NA	NA
VEJ31934.1|691736_692282_+	N-acetylmuramoyl-L-alanine amidase	NA	U5PZX6	Acinetobacter_phage	49.2	1.5e-37
VEJ31935.1|692487_692652_+	phage protein	NA	NA	NA	NA	NA
VEJ31936.1|692654_692891_+	phage protein	NA	NA	NA	NA	NA
VEJ31937.1|692862_693282_+	putative phage associated membrane protein	NA	NA	NA	NA	NA
VEJ31938.1|693301_693496_+	phage protein	NA	NA	NA	NA	NA
VEJ31939.1|693492_693705_+	phage protein	NA	NA	NA	NA	NA
VEJ31940.1|693832_694099_+	phage protein	NA	NA	NA	NA	NA
VEJ31941.1|694095_694293_+	phage protein	NA	NA	NA	NA	NA
VEJ31942.1|694294_694801_+	phage protein	NA	I6PBD1	Pseudomonas_phage	51.5	5.3e-40
VEJ31943.1|694821_696444_+	phage protein	NA	B7SDN0	Haemophilus_phage	69.7	8.5e-225
VEJ31944.1|696443_698012_+	phage protein	NA	A0A0M3LRU4	Mannheimia_phage	61.4	1.0e-187
VEJ31945.1|697998_699294_+	Phage Mu protein F like protein	NA	B7SDN5	Haemophilus_phage	49.9	2.8e-114
VEJ31946.1|699403_699820_+|tail	putative phage tail completion protein	tail	B7SDN8	Haemophilus_phage	48.2	2.4e-30
VEJ31947.1|700050_701112_+	protein gp32	NA	A0A2D1GNS3	Pseudomonas_phage	43.0	9.6e-60
VEJ31948.1|701199_702165_-|transposase	transposase for IS1655	transposase	W5R8L2	Staphylococcus_phage	35.5	8.0e-37
VEJ31949.1|702219_702660_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ31950.1|702691_702871_+	Mu-like prophage protein gp36	NA	NA	NA	NA	NA
VEJ31951.1|702860_703511_+	putative Gp37-like prophage protein	NA	B7SDP5	Haemophilus_phage	38.4	5.2e-32
VEJ31952.1|703507_703705_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ31953.1|703707_705117_+|tail	Bacteriophage Mu tail sheath protein	tail	B7SDP8	Haemophilus_phage	52.8	2.5e-124
VEJ31954.1|705181_705559_+	Uncharacterised protein	NA	A0A0M3LRV6	Mannheimia_phage	50.8	5.3e-29
VEJ31955.1|705562_705928_+	Uncharacterised protein	NA	F6MIK9	Haemophilus_phage	37.7	5.3e-10
VEJ31956.1|706179_706782_-	putative lipoprotein	NA	NA	NA	NA	NA
VEJ31957.1|706936_709108_+	Uncharacterised protein	NA	A0A0M3LPB6	Mannheimia_phage	29.8	4.3e-38
VEJ31958.1|709107_710439_+	putative phage virion protein	NA	A0A0M3LQ21	Mannheimia_phage	35.1	4.7e-64
VEJ31959.1|710428_711574_+|tail	putative phage tail protein	tail	F6MIL3	Haemophilus_phage	57.9	3.0e-115
VEJ31960.1|711570_711804_+|plate	putative baseplate assembly protein V	plate	A0A0M3LPA3	Mannheimia_phage	55.4	1.4e-11
VEJ31961.1|711754_712120_+	Phage-like element PBSX protein xkdT	NA	F6MIL6	Haemophilus_phage	61.2	2.6e-33
VEJ31962.1|712268_712829_+	phage protein	NA	A0A0M3LQE1	Mannheimia_phage	39.2	3.1e-25
VEJ31963.1|715795_716098_-	Uncharacterized protein conserved in bacteria	NA	A0A2H4J5Y5	uncultured_Caudovirales_phage	38.8	1.1e-05
>prophage 6
LR134522	Neisseria meningitidis strain NCTC3372 genome assembly, chromosome: 1	2182188	945045	1008874	2182188	transposase,tRNA,protease	Bacillus_phage(14.29%)	59	NA	NA
VEJ32168.1|945045_945861_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
VEJ32169.1|945921_946779_+	Domain of uncharacterised function (DUF1853)	NA	NA	NA	NA	NA
VEJ32170.1|946982_947324_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32171.1|947671_948928_+	SUN-family protein	NA	NA	NA	NA	NA
VEJ32172.1|949683_950118_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32173.1|950165_951509_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
VEJ32174.1|951513_952167_-	integral membrane protein, MarC family	NA	NA	NA	NA	NA
VEJ32175.1|952317_952608_+|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit C	tRNA	NA	NA	NA	NA
VEJ32176.1|952670_954116_+|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit A	tRNA	NA	NA	NA	NA
VEJ32177.1|954112_955045_+	Hypothetical membrane protein	NA	NA	NA	NA	NA
VEJ32178.1|955087_956518_+|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	tRNA	NA	NA	NA	NA
VEJ32179.1|956609_957620_+	iron/sulfur-binding oxidoreductase	NA	NA	NA	NA	NA
VEJ32180.1|957749_958382_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
VEJ32181.1|958602_959652_+	pseudouridine synthase	NA	NA	NA	NA	NA
VEJ32182.1|959720_961262_-	membrane transporter	NA	NA	NA	NA	NA
VEJ32183.1|962474_963830_-	exodeoxyribonuclease VII large subunit	NA	A0A1B3AYB4	Gordonia_phage	28.4	1.5e-36
VEJ32184.1|964056_964848_+	putative NH(3)-dependent NAD synthetase	NA	A0A222YW38	Synechococcus_phage	49.8	1.1e-57
VEJ32185.1|964917_965391_-	Regulator of cell morphogenesis and NO signaling	NA	NA	NA	NA	NA
VEJ32186.1|965693_966026_+	putative thioredoxin I	NA	A0A1J0GW78	Streptomyces_phage	43.2	5.0e-15
VEJ32187.1|966078_967026_-	putative methyltransferase	NA	NA	NA	NA	NA
VEJ32188.1|967353_968742_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.2	1.5e-52
VEJ32189.1|969386_969941_-	Membrane lipoprotein	NA	NA	NA	NA	NA
VEJ32190.1|970025_970526_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32191.1|970929_972123_+	acetylornithine/succinyldiaminopimelate aminotransferase (ACOAT; succinyldiaminopimelate transferase; DapATase)	NA	A0A1V0SKB7	Klosneuvirus	27.8	2.0e-29
VEJ32192.1|972187_973432_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	57.4	1.1e-128
VEJ32193.1|973622_973994_+	ribosome-binding factor A	NA	NA	NA	NA	NA
VEJ32194.1|974004_974529_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32195.1|974586_975507_+|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
VEJ32196.1|975826_976267_+	restriction modification protein Mod	NA	NA	NA	NA	NA
VEJ32197.1|976599_977973_+	type III restriction/modification system modification methylase	NA	Q1MVP0	Enterobacteria_phage	41.0	4.0e-58
VEJ32198.1|977962_980743_+	type III restriction/modification system enzyme	NA	NA	NA	NA	NA
VEJ32199.1|980886_982059_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
VEJ32200.1|982348_982795_+	DNA-binding protein	NA	NA	NA	NA	NA
VEJ32201.1|982823_984038_+	cysteine desulfurase	NA	A0A1X7C038	Faustovirus	27.1	5.0e-28
VEJ32202.1|984103_984232_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32203.1|984297_984684_+	scaffold protein	NA	A0A218MKD1	uncultured_virus	79.0	1.9e-53
VEJ32204.1|984770_985091_+	HesB/YadR/YfhF family protein	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	4.8e-23
VEJ32205.1|985050_985272_-	Alternative ribosome-rescue factor A	NA	NA	NA	NA	NA
VEJ32206.1|985353_985854_+	chaperone protein HscB	NA	NA	NA	NA	NA
VEJ32207.1|985951_988702_+	DNA gyrase subunit A	NA	A0A172JHV7	Bacillus_phage	30.4	1.1e-88
VEJ32208.1|988858_989263_+|transposase	transposase	transposase	NA	NA	NA	NA
VEJ32209.1|989321_989540_+|transposase	transposase	transposase	NA	NA	NA	NA
VEJ32210.1|990307_990730_-	putative phage associated protein	NA	NA	NA	NA	NA
VEJ32211.1|990872_992519_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
VEJ32212.1|992639_993488_-	putative RpiR-family transcriptional regulator	NA	NA	NA	NA	NA
VEJ32213.1|993537_994524_-	glucokinase	NA	NA	NA	NA	NA
VEJ32214.1|994504_995200_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
VEJ32215.1|995479_996925_-	glucose-6-phosphate dehydrogenase	NA	M4SP85	Cyanophage	36.2	5.3e-77
VEJ32216.1|997464_999378_+	phosphogluconate dehydratase	NA	NA	NA	NA	NA
VEJ32217.1|999558_1000197_+	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA	NA
VEJ32218.1|1000453_1001197_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
VEJ32219.1|1001354_1001537_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
VEJ32220.1|1001699_1002740_+	adenine glycosylase	NA	NA	NA	NA	NA
VEJ32221.1|1002902_1003085_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32222.1|1003156_1003717_+	superoxide dismutase	NA	Q9MC02	Salmonella_phage	51.9	2.1e-45
VEJ32223.1|1004075_1004414_-|transposase	IS1106 transposase (fragment)	transposase	NA	NA	NA	NA
VEJ32224.1|1004540_1005083_-|transposase	IS1106 transposase	transposase	NA	NA	NA	NA
VEJ32225.1|1005306_1007535_-	ABC transporter family protein	NA	W8CYL7	Bacillus_phage	28.7	4.4e-46
VEJ32226.1|1008334_1008874_-|transposase	IS1016 transposase	transposase	NA	NA	NA	NA
>prophage 7
LR134522	Neisseria meningitidis strain NCTC3372 genome assembly, chromosome: 1	2182188	1201686	1279494	2182188	transposase,tRNA,tail,plate,protease,head	Haemophilus_phage(22.22%)	92	NA	NA
VEJ32388.1|1201686_1202694_+|transposase	IS1106A3 transposase	transposase	NA	NA	NA	NA
VEJ32389.1|1202961_1203825_+	integral membrane protein	NA	NA	NA	NA	NA
VEJ32390.1|1203701_1204976_-|protease	putative periplasmic protease	protease	NA	NA	NA	NA
VEJ32391.1|1205578_1206142_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
VEJ32392.1|1206368_1206935_-|transposase	transposase	transposase	NA	NA	NA	NA
VEJ32393.1|1206952_1207288_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
VEJ32394.1|1207416_1208322_+	AraC family transcription regulator	NA	NA	NA	NA	NA
VEJ32395.1|1208383_1208872_-	lipoprotein	NA	NA	NA	NA	NA
VEJ32396.1|1209057_1209921_+	Predicted permease, DMT superfamily	NA	NA	NA	NA	NA
VEJ32397.1|1209961_1211092_-	ABC transporter periplasmic binding protein, polyamine	NA	NA	NA	NA	NA
VEJ32398.1|1211263_1213921_+|tRNA	alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	37.0	2.7e-79
VEJ32399.1|1213982_1214714_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32400.1|1215002_1215245_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32401.1|1215422_1217834_+	Type I restriction-modification system methyltransferase subunit	NA	Q6NE04	Leptospira_phage	41.8	1.4e-162
VEJ32402.1|1218635_1219319_-	phosphoglyceromutase	NA	NA	NA	NA	NA
VEJ32403.1|1219620_1221918_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	37.4	7.6e-86
VEJ32404.1|1221937_1223455_+	two component sensor kinase	NA	NA	NA	NA	NA
VEJ32405.1|1223506_1223974_+	two component response regulator	NA	NA	NA	NA	NA
VEJ32406.1|1224077_1224830_+	Ribosomal RNA small subunit methyltransferase J	NA	NA	NA	NA	NA
VEJ32407.1|1225863_1226070_-	Protein of uncharacterised function (DUF2788)	NA	NA	NA	NA	NA
VEJ32408.1|1226164_1227334_-	putative O-succinylhomoserine sulfhydrolase	NA	A0A2K9L4S9	Tupanvirus	23.6	3.3e-05
VEJ32409.1|1227631_1228393_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32410.1|1228492_1228744_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32411.1|1228795_1229602_+	ABC transporter periplasmic histidine-binding protein precursor	NA	NA	NA	NA	NA
VEJ32412.1|1229908_1231432_+	fumarate hydratase	NA	NA	NA	NA	NA
VEJ32413.1|1231529_1232942_+	potassium transporter peripheral membrane protein	NA	NA	NA	NA	NA
VEJ32414.1|1233245_1234211_+|transposase	transposase for IS1655	transposase	W5R8L2	Staphylococcus_phage	35.5	6.1e-37
VEJ32415.1|1235724_1236531_+	phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
VEJ32416.1|1236580_1237435_-	tellurite resistance protein TehB	NA	NA	NA	NA	NA
VEJ32417.1|1237563_1238001_+	ribonuclease H	NA	J9Q745	Salmonella_phage	55.0	7.7e-40
VEJ32418.1|1239302_1239707_+	putative HIT domain protein	NA	NA	NA	NA	NA
VEJ32419.1|1239746_1240931_+	putative muramoyltetrapeptide carboxypeptidase (LD-carboxypeptidase A)	NA	NA	NA	NA	NA
VEJ32420.1|1240993_1241527_-	glutathione peroxidase	NA	NA	NA	NA	NA
VEJ32421.1|1241786_1242626_-	putative N-6adenine-specific DNA methylase	NA	A0A0R6PH56	Moraxella_phage	50.0	6.2e-78
VEJ32422.1|1242973_1243462_-	Uncharacterised protein	NA	A0A0R6PGL8	Moraxella_phage	47.7	6.7e-24
VEJ32423.1|1243462_1244086_-	putative phage fiber-spike protein	NA	NA	NA	NA	NA
VEJ32424.1|1244082_1246365_-|tail	putative tail fiber protein	tail	U5PSK6	Bacillus_phage	35.3	9.4e-20
VEJ32425.1|1246367_1246934_-	phage protein	NA	A0A0M3LQE1	Mannheimia_phage	36.3	8.0e-21
VEJ32426.1|1246930_1247506_-	Phage-like element PBSX protein xkdT	NA	F6MIL6	Haemophilus_phage	42.0	3.4e-35
VEJ32427.1|1247508_1247994_-|plate	baseplate J-like protein	plate	F6MIL6	Haemophilus_phage	41.4	6.8e-21
VEJ32428.1|1247990_1248344_-	putative Gp46-like prophage protein	NA	A0A2H4JDR8	uncultured_Caudovirales_phage	53.0	3.7e-24
VEJ32429.1|1248404_1249034_-	putative Gp45-like prophage protein	NA	A0A0M3LPA3	Mannheimia_phage	47.2	2.3e-32
VEJ32430.1|1249034_1250174_-|tail	putative phage tail protein	tail	A0A2H4J9E6	uncultured_Caudovirales_phage	44.0	1.6e-81
VEJ32431.1|1250157_1251525_-	putative phage DNA circulation proteins	NA	F6MIL2	Haemophilus_phage	28.9	6.2e-43
VEJ32432.1|1251524_1251944_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32433.1|1251894_1253574_-|tail	Phage-related minor tail protein	tail	A0A0M3LPB6	Mannheimia_phage	34.7	4.9e-42
VEJ32434.1|1253570_1253819_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32435.1|1253776_1254166_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32436.1|1254294_1254438_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32437.1|1254655_1255120_-	putative peptidase	NA	L7THB5	Pseudomonas_virus	39.1	2.0e-22
VEJ32438.1|1255106_1255493_-	putative HTH-type transcriptional regulator	NA	L7TKV7	Pseudomonas_virus	54.3	2.8e-25
VEJ32439.1|1255668_1256043_-	Uncharacterised protein	NA	F6MIK8	Haemophilus_phage	45.2	3.3e-23
VEJ32440.1|1256056_1257484_-|tail	putative bacteriophage Mu-like tail sheath protein	tail	B7SDP8	Haemophilus_phage	42.0	3.1e-85
VEJ32441.1|1257483_1257672_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32442.1|1257668_1258337_-	putative Gp37-like prophage protein	NA	NA	NA	NA	NA
VEJ32443.1|1258320_1258746_-	phage protein	NA	A0A0C4UR02	Shigella_phage	41.7	2.9e-15
VEJ32444.1|1258742_1259216_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32445.1|1259253_1260156_-|head	putative GpT-like prophage major head subunit protein	head	A0SMP3	Pseudomonas_virus	64.8	5.0e-110
VEJ32446.1|1260177_1261233_-	putative phage maturation peptidase	NA	A0A0M5N0Q6	Ralstonia_phage	34.3	7.9e-30
VEJ32447.1|1261450_1261948_-|tail	putative phage tail completion protein	tail	A0A0M3LSP9	Mannheimia_phage	37.3	2.4e-13
VEJ32448.1|1262051_1263398_-|head	putative phage head morphogenesis protein	head	B7SDN5	Haemophilus_phage	31.6	1.7e-40
VEJ32449.1|1263390_1264950_-	phage protein	NA	A0A0M3LRU4	Mannheimia_phage	47.8	3.1e-131
VEJ32450.1|1265028_1266648_-	phage protein	NA	B7SDN0	Haemophilus_phage	70.5	1.7e-220
VEJ32451.1|1266659_1266854_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32452.1|1266850_1267357_-	phage protein	NA	A0A0A1IX73	Pseudomonas_phage	56.2	7.1e-45
VEJ32453.1|1267359_1267575_-	phage protein	NA	NA	NA	NA	NA
VEJ32454.1|1267574_1267856_-	phage protein	NA	NA	NA	NA	NA
VEJ32455.1|1267852_1268194_-	phage protein	NA	NA	NA	NA	NA
VEJ32456.1|1268190_1268409_-	phage protein	NA	NA	NA	NA	NA
VEJ32457.1|1268421_1268592_+	phage protein	NA	NA	NA	NA	NA
VEJ32458.1|1268636_1268819_-	phage protein	NA	NA	NA	NA	NA
VEJ32459.1|1268838_1269258_-	putative phage associated membrane protein	NA	NA	NA	NA	NA
VEJ32460.1|1269229_1269466_-	phage protein	NA	NA	NA	NA	NA
VEJ32461.1|1269468_1269633_-	phage protein	NA	NA	NA	NA	NA
VEJ32462.1|1269838_1270384_-	N-acetylmuramoyl-L-alanine amidase	NA	U5PZX6	Acinetobacter_phage	49.2	4.1e-38
VEJ32463.1|1270515_1271157_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32464.1|1271204_1271651_-	integral membrane protein	NA	A0A2D1GNW5	Pseudomonas_phage	29.2	7.2e-09
VEJ32465.1|1271647_1272082_-	phage protein	NA	L7P7R1	Pseudomonas_phage	43.3	5.2e-20
VEJ32466.1|1272157_1272433_-	DNA-binding protein HU-B	NA	A3E2K9	Sodalis_phage	52.8	8.9e-18
VEJ32467.1|1272481_1272682_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32468.1|1272682_1273333_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32469.1|1273338_1273950_-	Protein of uncharacterised function (DUF3164)	NA	A0A0M3LQ92	Mannheimia_phage	54.4	6.3e-56
VEJ32470.1|1273942_1274104_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32471.1|1274108_1274564_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32472.1|1275043_1275358_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32473.1|1275354_1275534_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32474.1|1275550_1275715_-	small secreted protein	NA	NA	NA	NA	NA
VEJ32475.1|1275730_1275883_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32476.1|1275885_1276185_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32477.1|1276174_1276417_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ32478.1|1276492_1277407_-	putative phage transposition protein	NA	A0A2D1GNS0	Pseudomonas_phage	44.5	2.0e-53
VEJ32479.1|1277448_1279494_-|transposase	transposase	transposase	F6MII5	Haemophilus_phage	40.0	6.5e-113
>prophage 8
LR134522	Neisseria meningitidis strain NCTC3372 genome assembly, chromosome: 1	2182188	1845275	1853415	2182188		Enterobacteria_phage(33.33%)	8	NA	NA
VEJ33026.1|1845275_1846106_+	5-methylcytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	36.7	1.1e-39
VEJ33028.1|1846270_1846615_+	site-specific DNA methylase, truncation	NA	NA	NA	NA	NA
VEJ33030.1|1846672_1847314_+	UDP-glucose 4-epimerase, truncation	NA	A0A2K9L1R4	Tupanvirus	45.1	1.3e-48
VEJ33032.1|1847429_1848455_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.6	3.0e-98
VEJ33034.1|1848560_1849427_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	64.6	5.5e-106
VEJ33036.1|1849465_1850038_+	dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose 3,5-epimerase; dTDP-L-rhamnose synthetase)	NA	I7HJC4	Enterobacteria_phage	52.3	1.1e-49
VEJ33038.1|1850080_1852099_-	membrane protein	NA	NA	NA	NA	NA
VEJ33040.1|1852293_1853415_-	DnaJ protein	NA	E3T4P7	Cafeteria_roenbergensis_virus	34.0	7.9e-28
>prophage 9
LR134522	Neisseria meningitidis strain NCTC3372 genome assembly, chromosome: 1	2182188	2086669	2121992	2182188	transposase,tRNA,protease	uncultured_virus(50.0%)	27	NA	NA
VEJ33418.1|2086669_2088016_-|tRNA	tRNA modification GTPase TrmE	tRNA	NA	NA	NA	NA
VEJ33419.1|2088146_2088302_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ33420.1|2088298_2088730_+	putative inner membrane protein	NA	NA	NA	NA	NA
VEJ33421.1|2088863_2093213_+	autotransporter App	NA	NA	NA	NA	NA
VEJ33423.1|2093528_2093972_-|transposase	ISNme1 transposase (contains a 35 aa insertion)	transposase	NA	NA	NA	NA
VEJ33424.1|2094098_2094641_-|transposase	IS1106 transposase	transposase	NA	NA	NA	NA
VEJ33425.1|2094702_2095374_-	Fic/DOC family	NA	NA	NA	NA	NA
VEJ33427.1|2095658_2096201_+|transposase	IS1106 transposase	transposase	NA	NA	NA	NA
VEJ33428.1|2096324_2096666_+|transposase	IS1106 transposase (fragment)	transposase	NA	NA	NA	NA
VEJ33429.1|2097392_2100209_-	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	30.5	5.9e-72
VEJ33430.1|2100354_2100861_-	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
VEJ33432.1|2100882_2101080_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEJ33433.1|2101094_2101307_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ33434.1|2101325_2102342_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ33435.1|2102368_2102692_-	frataxin-like protein	NA	NA	NA	NA	NA
VEJ33437.1|2102762_2102933_+	putative lipoprotein	NA	NA	NA	NA	NA
VEJ33439.1|2102943_2104188_+	diaminopimelate decarboxylase	NA	NA	NA	NA	NA
VEJ33441.1|2104223_2104316_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ33443.1|2104312_2105899_-	sodium-dependent inner membrane transport protein	NA	NA	NA	NA	NA
VEJ33445.1|2106061_2106715_-|transposase	insertion element IS1016 transposase	transposase	NA	NA	NA	NA
VEJ33447.1|2106941_2107232_+	co-chaperonin GroES	NA	A0A221S308	uncultured_virus	42.6	7.5e-15
VEJ33449.1|2107324_2108959_+	molecular chaperone GroEL	NA	A0A2I7SAK5	Vibrio_phage	63.0	5.3e-174
VEJ33451.1|2109565_2111812_-	hemoglobin-haptoglobin-utilization protein	NA	NA	NA	NA	NA
VEJ33453.1|2111892_2112993_-	hemoglobin-haptoglobin-utilization protein	NA	NA	NA	NA	NA
VEJ33455.1|2114313_2115831_+	hypothetical periplasmic protein	NA	NA	NA	NA	NA
VEJ33457.1|2115889_2117671_-	para-aminobenzoate synthase component I	NA	S4VT78	Pandoravirus	29.3	1.6e-35
VEJ33458.1|2119070_2121992_-|protease	extracellular serine protease precursor	protease	NA	NA	NA	NA
