assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900638695.1_59178_A02	LR134536	Staphylococcus epidermidis strain NCTC13924 genome assembly, chromosome: 1	1	431984-432067	1	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	GAAATTCTACGGACAAGGCAAGTTG	25	1	2	432009-432042|432009-432042	LR134536.1_1394545-1394512|LR134536.1_1394604-1394571	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA|52aa|up_7|LR134536.1_424196_424352_-,NA|36aa|up_0|LR134536.1_431322_431430_+,NA	NA|300aa|up_9|LR134536.1_421507_422407_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|358aa|up_8|LR134536.1_422893_423967_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|52aa|up_7|LR134536.1_424196_424352_-	NA	NA|165aa|up_6|LR134536.1_424917_425412_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|204aa|up_5|LR134536.1_425577_426189_+	TIGR01076, Uncharacterized_protein_YhcS, LPXTG-site transpeptidase (sortase) family protein	NA|270aa|up_4|LR134536.1_426532_427342_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|331aa|up_3|LR134536.1_427528_428521_-	PRK12480, PRK12480, D-lactate dehydrogenase; Provisional	NA|223aa|up_2|LR134536.1_428761_429430_+	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB	NA|498aa|up_1|LR134536.1_429807_431301_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|36aa|up_0|LR134536.1_431322_431430_+	NA	NA|263aa|down_0|LR134536.1_432129_432918_-	COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase [General function prediction only]	NA|94aa|down_1|LR134536.1_433179_433461_-	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|316aa|down_2|LR134536.1_433627_434575_+	cd01017, AdcA, Metal binding protein AdcA	NA|475aa|down_3|LR134536.1_434645_436070_-	cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde dehydrogenase AldA-like	NA|350aa|down_4|LR134536.1_436318_437368_-	COG3949, COG3949, Uncharacterized membrane protein [Function unknown]	NA|596aa|down_5|LR134536.1_437715_439503_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|655aa|down_6|LR134536.1_439731_441696_-	COG3855, Fbp, Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]	NA|205aa|down_7|LR134536.1_441869_442484_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|333aa|down_8|LR134536.1_442591_443590_-	TIGR02356, molybdopterin_biosynthesis_protein_moeB, thiazole biosynthesis adenylyltransferase ThiF, E	NA|256aa|down_9|LR134536.1_443591_444359_-	PRK00208, thiG, thiazole synthase; Reviewed
GCA_900638695.1_59178_A02	LR134536	Staphylococcus epidermidis strain NCTC13924 genome assembly, chromosome: 1	2	912918-913019	2	CRISPRCasFinder	no	cas3	WYL,csa3,cas3,DEDDh,DinG	Unclear	TCATGTATAAGAAACACTAAATACCTATGTATTAAGTG	38	0	0	NA	NA	NA	1	1	Unclear	WYL,csa3,cas3,DEDDh,DinG	NA,NA	NA|215aa|up_9|LR134536.1_903313_903958_+	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|212aa|up_8|LR134536.1_903962_904598_+	TIGR01378, Thiamine_pyrophosphokinase, thiamine pyrophosphokinase	NA|63aa|up_7|LR134536.1_904680_904869_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|LR134536.1_905226_905601_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|up_5|LR134536.1_905615_907274_+	TIGR03599, YloV, DAK2 domain fusion protein YloV	cas3|683aa|up_4|LR134536.1_907477_909526_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|187aa|up_3|LR134536.1_909684_910245_+	PRK04424, PRK04424, transcription factor FapR	NA|326aa|up_2|LR134536.1_910246_911224_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|LR134536.1_911225_912152_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|LR134536.1_912144_912879_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|LR134536.1_913106_913340_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|246aa|down_1|LR134536.1_913454_914192_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1190aa|down_2|LR134536.1_914318_917888_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|409aa|down_3|LR134536.1_917884_919111_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|LR134536.1_919112_919445_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|LR134536.1_919475_920843_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|LR134536.1_921150_921426_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|LR134536.1_921552_922056_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|LR134536.1_922055_922793_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|LR134536.1_922898_923249_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCA_900638695.1_59178_A02	LR134536	Staphylococcus epidermidis strain NCTC13924 genome assembly, chromosome: 1	3	920950-921045	3	CRISPRCasFinder	no	cas3	WYL,csa3,cas3,DEDDh,DinG	Unclear	CATGCATAACCAAAAGTACGATTTACTTCGTAAA	34	0	0	NA	NA	NA	1	1	Unclear	WYL,csa3,cas3,DEDDh,DinG	NA,NA	NA|187aa|up_9|LR134536.1_909684_910245_+	PRK04424, PRK04424, transcription factor FapR	NA|326aa|up_8|LR134536.1_910246_911224_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_7|LR134536.1_911225_912152_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_6|LR134536.1_912144_912879_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|up_5|LR134536.1_913106_913340_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|246aa|up_4|LR134536.1_913454_914192_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1190aa|up_3|LR134536.1_914318_917888_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|409aa|up_2|LR134536.1_917884_919111_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|up_1|LR134536.1_919112_919445_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|up_0|LR134536.1_919475_920843_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_0|LR134536.1_921150_921426_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_1|LR134536.1_921552_922056_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_2|LR134536.1_922055_922793_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_3|LR134536.1_922898_923249_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|868aa|down_4|LR134536.1_923778_926382_-	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|867aa|down_5|LR134536.1_926374_928975_-	pfam09586, YfhO, Bacterial membrane protein YfhO	NA|288aa|down_6|LR134536.1_929303_930167_+	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|257aa|down_7|LR134536.1_930171_930942_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|389aa|down_8|LR134536.1_931049_932216_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|303aa|down_9|LR134536.1_932237_933146_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated
GCA_900638695.1_59178_A02	LR134536	Staphylococcus epidermidis strain NCTC13924 genome assembly, chromosome: 1	4	2160582-2160677	4	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	CACTGCAATTTTTAATTGCTTGTGTCACTTATG	33	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA|53aa|up_5|LR134536.1_2156600_2156759_+,NA|52aa|down_6|LR134536.1_2164424_2164580_-,NA|79aa|down_9|LR134536.1_2166737_2166974_+	NA|436aa|up_9|LR134536.1_2152823_2154131_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_8|LR134536.1_2154225_2154987_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|287aa|up_7|LR134536.1_2155308_2156169_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|64aa|up_6|LR134536.1_2156234_2156426_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|53aa|up_5|LR134536.1_2156600_2156759_+	NA	NA|271aa|up_4|LR134536.1_2157028_2157841_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|LR134536.1_2157861_2158557_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|LR134536.1_2158549_2159575_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|LR134536.1_2159827_2160124_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|LR134536.1_2160116_2160503_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|127aa|down_0|LR134536.1_2160762_2161143_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|118aa|down_1|LR134536.1_2161316_2161670_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|108aa|down_2|LR134536.1_2161812_2162136_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|181aa|down_3|LR134536.1_2162318_2162861_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_4|LR134536.1_2162941_2163658_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|142aa|down_5|LR134536.1_2163815_2164241_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|52aa|down_6|LR134536.1_2164424_2164580_-	NA	NA|167aa|down_7|LR134536.1_2165165_2165666_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|196aa|down_8|LR134536.1_2165936_2166524_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|79aa|down_9|LR134536.1_2166737_2166974_+	NA
GCA_900638695.1_59178_A02	LR134536	Staphylococcus epidermidis strain NCTC13924 genome assembly, chromosome: 1	5	2312289-2312379	5	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	TGTTGAATTTCCCGGTGAAATTCTCTATGTTG	32	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA|99aa|up_9|LR134536.1_2304374_2304671_-,NA|62aa|up_2|LR134536.1_2309986_2310172_-,NA	NA|99aa|up_9|LR134536.1_2304374_2304671_-	NA	NA|141aa|up_8|LR134536.1_2304802_2305225_-	TIGR01069, Endonuclease_MutS2, MutS2 family protein	NA|230aa|up_7|LR134536.1_2305663_2306353_+	pfam06570, DUF1129, Protein of unknown function (DUF1129)	NA|163aa|up_6|LR134536.1_2306408_2306897_-	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|403aa|up_5|LR134536.1_2306903_2308112_-	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|285aa|up_4|LR134536.1_2308169_2309024_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|198aa|up_3|LR134536.1_2309104_2309698_-	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|62aa|up_2|LR134536.1_2309986_2310172_-	NA	NA|382aa|up_1|LR134536.1_2310191_2311337_-	PRK13289, PRK13289, NO-inducible flavohemoprotein	NA|225aa|up_0|LR134536.1_2311508_2312183_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|159aa|down_0|LR134536.1_2312493_2312970_-	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain	NA|239aa|down_1|LR134536.1_2312969_2313686_-	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|120aa|down_2|LR134536.1_2313938_2314298_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|725aa|down_3|LR134536.1_2314412_2316587_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|220aa|down_4|LR134536.1_2316850_2317510_-	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|267aa|down_5|LR134536.1_2317920_2318721_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|337aa|down_6|LR134536.1_2318913_2319924_-	pfam01384, PHO4, Phosphate transporter family	NA|206aa|down_7|LR134536.1_2319938_2320556_-	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|630aa|down_8|LR134536.1_2321077_2322967_-	pfam02687, FtsX, FtsX-like permease family	NA|254aa|down_9|LR134536.1_2322956_2323718_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
