The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR216050	Streptococcus pneumoniae isolate GPS_US_PATH396-sc-2296505 genome assembly, chromosome: 1	2074861	714	25182	2074861	transposase,integrase,bacteriocin	Streptococcus_phage(71.43%)	38	3764:3779	10017:10032
VFI14385.1|714_921_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	85.3	2.1e-24
VFI14386.1|1237_1474_+	recombination regulator RecX	NA	NA	NA	NA	NA
VFI14387.1|1662_2991_+	adenylosuccinate synthetase	NA	L7Y4J5	Megavirus	37.1	3.6e-72
VFI14388.1|3191_3659_+	cytidine/deoxycytidylate deaminase	NA	NA	NA	NA	NA
3764:3779	attL	TTGTGTGCTCTTTTTT	NA	NA	NA	NA
VFI14389.1|3867_4584_-|integrase	integrase	integrase	A0A1S5SDQ9	Streptococcus_phage	100.0	2.7e-130
VFI14390.1|4655_5009_-|integrase	integrase	integrase	U4KJ82	Streptococcus_phage	97.3	4.5e-54
VFI14391.1|5063_6134_-	type I restriction enzyme related protein	NA	A0A1S5SAB0	Streptococcus_phage	97.8	2.9e-181
VFI14392.1|6150_6531_-	Phage protein	NA	A0A1S5SBG5	Streptococcus_phage	98.4	1.7e-67
VFI14393.1|6543_6807_-	plasmid stabilisation system protein	NA	A0A1S5S8E8	Streptococcus_phage	100.0	1.2e-43
VFI14394.1|6806_7040_-	Uncharacterised protein	NA	A0A1S5S8D5	Streptococcus_phage	96.1	8.9e-35
VFI14395.1|7039_7408_-	phage DNA-binding protein	NA	A0A1S5SBE7	Streptococcus_phage	100.0	1.4e-63
VFI14396.1|7705_7837_+	Uncharacterised protein	NA	A0A1S5SEU2	Streptococcus_phage	100.0	2.2e-11
VFI14397.1|7822_7915_-	Uncharacterised protein	NA	A0A141DZS0	Streptococcus_phage	95.7	8.3e-05
VFI14398.1|7979_8171_+	DNA-binding protein	NA	A0A141DZR9	Streptococcus_phage	100.0	3.0e-28
VFI14399.1|8193_8397_+	Phage protein	NA	A0A141E1R6	Streptococcus_phage	95.5	1.3e-29
VFI14400.1|8411_8555_+	Uncharacterised protein	NA	Q708Q9	Streptococcus_phage	91.5	3.4e-21
VFI14401.1|8551_8719_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI14402.1|8789_9104_+	lytic amidase (N-acetylmuramoyl-L-alanine amidase)	NA	A0A060QRT9	Streptococcus_phage	84.6	9.5e-24
VFI14403.1|9323_9503_-	DNA-binding protein	NA	Q3BLW4	Phage_SK137	96.6	3.5e-23
VFI14404.1|10098_10542_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q2WG49	Clostridium_botulinum_D_phage	47.3	2.1e-29
10017:10032	attR	TTGTGTGCTCTTTTTT	NA	NA	NA	NA
VFI14405.1|10501_11059_+	phosphoglycerate mutase family protein	NA	NA	NA	NA	NA
VFI14406.1|11171_12434_+	DNA repair protein	NA	NA	NA	NA	NA
VFI14407.1|12506_13004_+	carbonic anhydrase	NA	NA	NA	NA	NA
VFI14408.1|13028_13844_+	repair protein	NA	NA	NA	NA	NA
VFI14409.1|13988_14957_+	ribose-phosphate pyrophosphokinase	NA	A0A1V0SHF7	Hokovirus	34.7	2.3e-44
VFI14410.1|14892_15372_-|transposase	transposase-like protein	transposase	A0A1S5SBP9	Streptococcus_phage	88.2	9.7e-44
VFI14411.1|15498_15732_-	adenylosuccinate lyase	NA	NA	NA	NA	NA
VFI14412.1|16055_16313_-|transposase	nuclease family transposase	transposase	NA	NA	NA	NA
VFI14413.1|16625_19295_+	DNA polymerase I - 3'-5' exonuclease and polymerase domains	NA	A0A218MKQ4	uncultured_virus	30.3	6.0e-58
VFI14414.1|19379_19817_+	CoA-binding protein	NA	NA	NA	NA	NA
VFI14415.1|19803_20061_+	chlorohydrolase	NA	NA	NA	NA	NA
VFI14416.1|20089_21100_-	membrane protein	NA	NA	NA	NA	NA
VFI14417.1|21248_22418_+	aspartate aminotransferase	NA	NA	NA	NA	NA
VFI14418.1|22414_23185_+	DNA repair protein RecO	NA	NA	NA	NA	NA
VFI14419.1|23181_24174_+	fatty acid/phospholipid synthesis protein	NA	NA	NA	NA	NA
VFI14420.1|24179_24413_+	acyl carrier protein	NA	A0A2I7RIC8	Vibrio_phage	40.6	3.3e-05
VFI14421.1|24455_24749_+|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
VFI14422.1|24951_25182_+|bacteriocin	bacteriocin BlpO	bacteriocin	NA	NA	NA	NA
>prophage 2
LR216050	Streptococcus pneumoniae isolate GPS_US_PATH396-sc-2296505 genome assembly, chromosome: 1	2074861	30721	42032	2074861		Synechococcus_phage(33.33%)	7	NA	NA
VFI14429.1|30721_32875_+	competence factor transporting ATP-binding protein/permease ComA	NA	W8CYL7	Bacillus_phage	28.0	1.0e-44
VFI14430.1|32887_34237_+	competence factor transport protein ComB	NA	NA	NA	NA	NA
VFI14431.1|34406_35114_+	phosphoribosylaminoimidazole-succinocarboxamide synthetase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.8e-41
VFI14432.1|35170_38896_+	phosphoribosylformylglycinamidine synthase II (FGAM synthetase)	NA	A6N228	Microbacterium_phage	25.9	2.5e-38
VFI14433.1|38988_40431_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.1	5.7e-55
VFI14434.1|40467_41490_+	phosphoribosylaminoimidazole synthetase	NA	A0A1D7SE90	Cyanophage	43.9	1.2e-64
VFI14435.1|41486_42032_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	9.7e-24
>prophage 3
LR216050	Streptococcus pneumoniae isolate GPS_US_PATH396-sc-2296505 genome assembly, chromosome: 1	2074861	70328	117118	2074861	transposase,bacteriocin,tRNA	Streptococcus_phage(50.0%)	51	NA	NA
VFI14463.1|70328_70646_+|transposase	IS630-Spn1, transposase Orf2	transposase	NA	NA	NA	NA
VFI14464.1|70650_72642_+	cell wall surface anchor family protein	NA	NA	NA	NA	NA
VFI14465.1|72808_73507_+	response regulator	NA	W8CYM9	Bacillus_phage	39.0	2.0e-37
VFI14466.1|73503_74556_+	histidine kinase	NA	NA	NA	NA	NA
VFI14467.1|74750_75362_+	30S ribosomal protein S4	NA	NA	NA	NA	NA
VFI14468.1|76023_76374_+	surface anchored protein	NA	NA	NA	NA	NA
VFI14469.1|76692_77622_+	ABC transporter permease	NA	NA	NA	NA	NA
VFI14470.1|77635_78559_+	ABC transporter permease	NA	NA	NA	NA	NA
VFI14471.1|78816_80292_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
VFI14472.1|80563_81550_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
VFI14473.1|81671_82532_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI14474.1|82709_83774_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI14475.1|83835_84747_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI14476.1|84739_85333_-	membrane protein	NA	NA	NA	NA	NA
VFI14477.1|85319_85646_-	transcriptional regulator	NA	NA	NA	NA	NA
VFI14478.1|85784_86951_-	cyanate permease	NA	NA	NA	NA	NA
VFI14479.1|87101_88166_+	glycosyl transferase	NA	NA	NA	NA	NA
VFI14480.1|88207_90058_+	nucleoside-diphosphate sugar isomerase	NA	A0A2P1ELS8	Moumouvirus	30.5	7.6e-28
VFI14481.1|90143_90356_-	N-ethylammeline chlorohydrolase	NA	NA	NA	NA	NA
VFI14482.1|90405_91038_-	phosphatase	NA	NA	NA	NA	NA
VFI14483.1|91059_91932_-	L-serine dehydratase, alpha subunit	NA	NA	NA	NA	NA
VFI14484.1|91940_92612_-	putative L-serine dehydratase beta subunit	NA	NA	NA	NA	NA
VFI14485.1|92853_93441_+	LysM domain protein	NA	A0A288TY55	Enterococcus_phage	56.2	1.7e-26
VFI14486.1|94577_94931_+	Membrane protein	NA	NA	NA	NA	NA
VFI14487.1|94927_95656_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI14488.1|95809_96022_+	Membrane protein	NA	NA	NA	NA	NA
VFI14489.1|96395_96521_+	Membrane protein	NA	NA	NA	NA	NA
VFI14490.1|96501_96747_+|bacteriocin	putative bacteriocin	bacteriocin	NA	NA	NA	NA
VFI14491.1|96903_97962_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI14492.1|98276_99254_+	Leader peptidase	NA	NA	NA	NA	NA
VFI14493.1|99630_100005_+	Membrane protein	NA	NA	NA	NA	NA
VFI14494.1|100212_101115_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI14495.1|101170_101503_+	Membrane protein	NA	NA	NA	NA	NA
VFI14496.1|101499_102228_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI14497.1|102706_102904_+|bacteriocin	putative bacteriocin	bacteriocin	NA	NA	NA	NA
VFI14498.1|103584_103863_+	membrane associated protein	NA	M1Q0Z8	Streptococcus_phage	50.5	1.1e-20
VFI14499.1|104151_104721_+	surface protein pspA precursor	NA	NA	NA	NA	NA
VFI14500.1|104780_105989_+	Pneumococcal surface protein A	NA	NA	NA	NA	NA
VFI14501.1|106388_107510_+|tRNA	tRNA-specific 2-thiouridylase MnmA	tRNA	NA	NA	NA	NA
VFI14502.1|107650_108106_+	mutT/nudix family protein	NA	NA	NA	NA	NA
VFI14503.1|108115_110029_+|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification protein GidA	tRNA	NA	NA	NA	NA
VFI14504.1|110407_112087_-	metallo-beta-lactamase superfamily protein 1	NA	NA	NA	NA	NA
VFI14505.1|112088_112322_-	transcriptional regulator	NA	NA	NA	NA	NA
VFI14506.1|112601_112925_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI14507.1|113137_113290_-|bacteriocin	bacteriocin-type signal sequence domain-containing protein	bacteriocin	NA	NA	NA	NA
VFI14508.1|113291_113477_-	excreted peptide	NA	NA	NA	NA	NA
VFI14509.1|113654_114338_+	molecular chaperone	NA	NA	NA	NA	NA
VFI14510.1|114334_114772_+	acetyltransferase	NA	NA	NA	NA	NA
VFI14511.1|114761_115772_+	O-sialoglycoprotein endopeptidase	NA	NA	NA	NA	NA
VFI14512.1|115811_116198_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	72.4	1.9e-45
VFI14513.1|116188_117118_-|transposase	IS1193, transposase, ISL3 family	transposase	A0A1S5SBP9	Streptococcus_phage	62.8	3.5e-90
>prophage 4
LR216050	Streptococcus pneumoniae isolate GPS_US_PATH396-sc-2296505 genome assembly, chromosome: 1	2074861	250111	369376	2074861	integrase,transposase,tRNA,holin,protease	Enterobacteria_phage(15.0%)	115	241965:241981	266770:266786
241965:241981	attL	TCTTTTCAGATAAGATG	NA	NA	NA	NA
VFI14657.1|250111_250534_-|integrase	phage integrase family integrase/recombinase	integrase	NA	NA	NA	NA
VFI14658.1|250680_250857_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI14659.1|250856_250982_+	filamentation induced by cAMP protein fic	NA	NA	NA	NA	NA
VFI14660.1|251257_253471_+	glycosyl hydrolase, family 31	NA	NA	NA	NA	NA
VFI14661.1|253692_254169_-	gluthatione peroxidase	NA	NA	NA	NA	NA
VFI14662.1|254391_257595_+	hyaluronidase	NA	NA	NA	NA	NA
VFI14663.1|258120_258336_+|transposase	truncated IS200 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	39.5	2.2e-08
VFI14664.1|258711_259341_-	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA	NA
VFI14665.1|259350_260352_-	carbohydrate kinase, PfkB family	NA	NA	NA	NA	NA
VFI14666.1|260382_261024_-	galactose-6-phosphate isomerase subunit LacB	NA	NA	NA	NA	NA
VFI14667.1|261042_261858_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
VFI14668.1|262128_262563_+	PTS system sugar-specific transporter subunit EII	NA	NA	NA	NA	NA
VFI14669.1|262574_263765_+	glucuronyl hydrolase	NA	NA	NA	NA	NA
VFI14670.1|263775_264267_+	N-acetylgalactosamine-specific phosphotransferase EIIB	NA	NA	NA	NA	NA
VFI14671.1|264281_265061_+	PTS system, N-acetylgalactosamine-specific IIC component	NA	NA	NA	NA	NA
VFI14672.1|265047_265866_+	PTS system transporter subunit IID	NA	NA	NA	NA	NA
VFI14673.1|265865_266159_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
VFI14674.1|266180_267383_+	oligohyaluronate lyase	NA	NA	NA	NA	NA
266770:266786	attR	TCTTTTCAGATAAGATG	NA	NA	NA	NA
VFI14675.1|267521_268082_+	oligohyaluronate lyase	NA	NA	NA	NA	NA
VFI14676.1|268141_269143_+	sugar binding transcriptional regulator RegR	NA	NA	NA	NA	NA
VFI14677.1|269252_269588_-	membrane protein	NA	NA	NA	NA	NA
VFI14678.1|269598_269841_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI14679.1|269851_270394_-	membrane protein	NA	NA	NA	NA	NA
VFI14680.1|270409_270604_-	transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	42.6	9.4e-06
VFI14681.1|270769_271720_+	S-adenosyl-methyltransferase mraW	NA	NA	NA	NA	NA
VFI14682.1|271731_272049_+	cell division protein FtsL	NA	NA	NA	NA	NA
VFI14683.1|272052_274305_+	penicillin-binding protein 2X	NA	NA	NA	NA	NA
VFI14684.1|274306_275287_+	UDP-phosphate-UDP-MurNAc-pentapeptide phospho-MurNAc-pentapeptide transferase	NA	NA	NA	NA	NA
VFI14685.1|275891_277997_+	Group II intron maturase	NA	H6X3M6	Enterobacteria_phage	37.6	1.0e-116
VFI14686.1|278442_278793_+	group II intron maturase	NA	NA	NA	NA	NA
VFI14687.1|278859_279342_-	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
VFI14688.1|279436_280921_-|protease	ATP-dependent Zn protease	protease	NA	NA	NA	NA
VFI14689.1|281073_282681_+	glucan 1,6-alpha-glucosidase	NA	NA	NA	NA	NA
VFI14690.1|283005_283344_-|transposase	IS630-Spn1, transposase Orf2	transposase	NA	NA	NA	NA
VFI14691.1|283765_285211_+	capsular polysaccharide biosynthesis protein Cps14A	NA	A0A1X9I5X1	Streptococcus_phage	59.4	4.4e-132
VFI14692.1|285212_285944_+	tyrosine-protein phosphatase CpsB	NA	NA	NA	NA	NA
VFI14693.1|285952_286645_+	capsular polysaccharide biosynthesis protein Cap5A	NA	A0A1X9I5E1	Streptococcus_phage	58.1	5.5e-64
VFI14694.1|286654_287344_+	tyrosine-protein kinase Wze	NA	A0A1X9I5D6	Streptococcus_phage	63.3	7.1e-72
VFI14695.1|287358_288720_+	galactosyl transferase CpsE	NA	NA	NA	NA	NA
VFI14696.1|288725_289469_+	UDP-N-acetyl-D-mannosamine transferase	NA	NA	NA	NA	NA
VFI14697.1|289465_290290_+	putative LicD-family phosphotransferase wchP	NA	A0A1V0SD50	Indivirus	38.2	4.0e-05
VFI14698.1|290291_291170_+	putative rhamnosyl transferase wchQ	NA	NA	NA	NA	NA
VFI14699.1|291170_292505_+	polysaccharide polymerase Cps19aI	NA	NA	NA	NA	NA
VFI14700.1|292532_293957_+	flippase Wzx	NA	NA	NA	NA	NA
VFI14701.1|294021_295110_+	UDP-N-acetylglucosamine 2-epimerase	NA	A0A1V0SAG5	Catovirus	30.2	1.6e-25
VFI14702.1|295272_296142_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	63.2	2.0e-100
VFI14703.1|296142_296736_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	32.3	3.3e-09
VFI14705.1|296747_297794_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	43.7	3.1e-71
VFI14707.1|297855_298710_-	dTDP-4-keto-L-rhamnose reductase RmlD	NA	A0A140G5S3	Enterobacteria_phage	36.6	1.7e-27
VFI14709.1|298955_300938_+	oligopeptide ABC transporter oligopeptide-binding protein AliA	NA	NA	NA	NA	NA
VFI14711.1|301238_306548_+	endo-alpha-N-acetylgalactosaminidase	NA	NA	NA	NA	NA
VFI14713.1|306715_308881_-	penicillin-binding protein 1A	NA	NA	NA	NA	NA
VFI14715.1|308877_309474_-	recombination protein U	NA	A0A1L2JY30	Aeribacillus_phage	33.9	8.7e-18
VFI14717.1|309539_310067_+	UPF0398 protein SSU05	NA	NA	NA	NA	NA
VFI14719.1|310136_310466_+	cell division initiation protein	NA	NA	NA	NA	NA
VFI14721.1|310951_312109_+	N-6 adenine-specific DNA methylase	NA	NA	NA	NA	NA
VFI14723.1|312120_313515_+	Holliday junction-specific endonuclease	NA	NA	NA	NA	NA
VFI14725.1|313590_315015_+|holin	choline binding protein J	holin	M4QQM4	Ostreococcus_lucimarinus_virus	29.6	1.6e-41
VFI14727.1|315026_315716_+|holin	choline binding protein J	holin	NA	NA	NA	NA
VFI14729.1|315813_316830_+|holin	choline binding protein C	holin	NA	NA	NA	NA
VFI14731.1|316948_318181_-	major facilitator superfamily permease	NA	NA	NA	NA	NA
VFI14733.1|318223_318811_-	lanthionine synthetase C-like protein	NA	NA	NA	NA	NA
VFI14735.1|319711_320041_+|holin	choline binding protein C	holin	NA	NA	NA	NA
VFI14737.1|320162_321041_+	mevalonate kinase	NA	NA	NA	NA	NA
VFI14739.1|321022_321976_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
VFI14741.1|321962_322970_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
VFI14743.1|322953_323964_+	isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2	NA	NA	NA	NA	NA
VFI14745.1|324040_324739_+	transporter	NA	NA	NA	NA	NA
VFI14747.1|324735_325731_+	histidine kinase	NA	NA	NA	NA	NA
VFI14749.1|325744_326377_+	response regulator	NA	NA	NA	NA	NA
VFI14751.1|327295_327535_+	V8-like Glu-specific endopeptidase	NA	NA	NA	NA	NA
VFI14753.1|327531_328437_+|holin	choline binding protein G	holin	NA	NA	NA	NA
VFI14755.1|328455_329328_+|holin	choline binding protein F	holin	NA	NA	NA	NA
VFI14757.1|329605_329791_-|transposase	IS3-Spn1 transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	50.0	2.7e-10
VFI14759.1|329738_330314_-|transposase	transposase-like protein, ISSpn1 ISSpn3	transposase	A0A1B1P773	Bacillus_phage	43.8	5.1e-31
VFI14761.1|330313_330481_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI14763.1|330616_330886_-|transposase	degenerate transposase (Orf1)	transposase	NA	NA	NA	NA
VFI14765.1|331037_332807_+	PTS system mannitol-specific transporter subunit EIIBC	NA	NA	NA	NA	NA
VFI14767.1|332830_334786_+	putative transcriptional regulator MtlR	NA	NA	NA	NA	NA
VFI14769.1|334787_335225_+	mannitol-specific phosphotransferase EIIA	NA	NA	NA	NA	NA
VFI14771.1|335286_336423_+	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA	NA
VFI14773.1|337208_338492_+	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)	NA	NA	NA	NA	NA
VFI14775.1|338539_340906_-	recombinase D	NA	A0A0K2FLP8	Brevibacillus_phage	26.9	1.8e-58
VFI14777.1|341033_341648_-	signal peptidase I	NA	NA	NA	NA	NA
VFI14779.1|341651_342533_-	ribonuclease HIII	NA	NA	NA	NA	NA
VFI14781.1|342619_342922_+|tRNA	seryl-tRNA synthetase	tRNA	NA	NA	NA	NA
VFI14783.1|342918_343467_+	CvpA family protein	NA	NA	NA	NA	NA
VFI14785.1|343570_345907_+	mismatch repair ATPase (MutS family)	NA	Q94M10	Lactobacillus_phage	55.1	1.3e-21
VFI14787.1|346249_347572_+	Na+/alanine symporter	NA	NA	NA	NA	NA
VFI14789.1|347789_348338_+	macrophage infectivity potentiator protein	NA	NA	NA	NA	NA
VFI14791.1|348447_349347_+	exfoliative toxin	NA	NA	NA	NA	NA
VFI14793.1|349371_350646_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.7	1.5e-91
VFI14795.1|350859_351231_-	ManO	NA	NA	NA	NA	NA
VFI14797.1|351233_352598_-	aspartate kinase	NA	NA	NA	NA	NA
VFI14799.1|352967_353753_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
VFI14801.1|353846_354281_+	transcription regulator, MarR family	NA	NA	NA	NA	NA
VFI14803.1|354280_355255_+	3-oxoacyl-ACP synthase III	NA	NA	NA	NA	NA
VFI14805.1|355314_355539_+	acyl carrier protein	NA	NA	NA	NA	NA
VFI14807.1|355657_356632_+	putative enoyl-(acyl-carrier-protein) reductase II	NA	NA	NA	NA	NA
VFI14809.1|356624_357545_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
VFI14811.1|357578_358310_+	3-oxoacyl-ACP reductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	30.9	2.2e-15
VFI14813.1|358331_359567_+	3-oxoacyl-(acyl carrier protein) synthase II	NA	NA	NA	NA	NA
VFI14815.1|359569_360055_+	acetyl-CoA carboxylase	NA	NA	NA	NA	NA
VFI14817.1|360051_360474_+	(3R)-hydroxymyristoyl-ACP dehydratase	NA	NA	NA	NA	NA
VFI14819.1|360485_361853_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
VFI14821.1|361889_362756_+	acetyl-CoA carboxylase beta subunit	NA	NA	NA	NA	NA
VFI14823.1|362752_363520_+	acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit	NA	NA	NA	NA	NA
VFI14825.1|363678_363864_+	excreted peptide	NA	NA	NA	NA	NA
VFI14827.1|363920_364355_+|protease	caax amino protease family protein	protease	NA	NA	NA	NA
VFI14829.1|364650_365073_-	transcription antitermination protein NusB	NA	NA	NA	NA	NA
VFI14831.1|365065_365455_-	general stress protein, Gls24 family	NA	NA	NA	NA	NA
VFI14833.1|365476_366037_-	Translation elongation factor P	NA	NA	NA	NA	NA
VFI14835.1|366165_367608_-|tRNA	glutamyl tRNA-Gln amidotransferase chain B	tRNA	NA	NA	NA	NA
VFI14837.1|367607_369074_-|tRNA	glutamyl-tRNA(Gln) amidotransferase, A subunit	tRNA	NA	NA	NA	NA
VFI14839.1|369073_369376_-|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit C	tRNA	NA	NA	NA	NA
>prophage 5
LR216050	Streptococcus pneumoniae isolate GPS_US_PATH396-sc-2296505 genome assembly, chromosome: 1	2074861	385888	494403	2074861	transposase,integrase,bacteriocin,tRNA,protease	Bacillus_phage(16.67%)	103	452779:452811	505532:505564
VFI14871.1|385888_386437_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VFI14873.1|386634_386757_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VFI14875.1|387012_387858_+	undecaprenol kinase	NA	NA	NA	NA	NA
VFI14877.1|388004_389066_-	DNA polymerase IV	NA	NA	NA	NA	NA
VFI14879.1|389460_391785_+	pyruvate formate-lyase	NA	A0A2P0VNR5	Tetraselmis_virus	32.9	7.9e-115
VFI14881.1|392151_392370_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI14883.1|392696_392981_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI14885.1|393592_393763_-|transposase	ISSpo8 transposase	transposase	NA	NA	NA	NA
VFI14887.1|394321_394510_+	PTS system lactose-specific transporter subunit IIBC	NA	NA	NA	NA	NA
VFI14889.1|394555_394780_+	PTS system lactose-specific transporter subunit IIBC truncated	NA	NA	NA	NA	NA
VFI14891.1|394904_396344_-	potassium uptake protein	NA	NA	NA	NA	NA
VFI14893.1|396347_397697_-	potassium uptake protein	NA	NA	NA	NA	NA
VFI14895.1|397885_398734_+	Molybdate/tungstate binding protein	NA	NA	NA	NA	NA
VFI14897.1|398748_399297_+	protein YdcD	NA	NA	NA	NA	NA
VFI14899.1|399303_399561_+	N-ethylammeline chlorohydrolase	NA	NA	NA	NA	NA
VFI14901.1|399662_401345_+	cobalt ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.4	4.5e-19
VFI14903.1|401329_402160_+	ABC transporter permease	NA	NA	NA	NA	NA
VFI14905.1|402352_402856_+	RNA methyltransferase	NA	NA	NA	NA	NA
VFI14907.1|403308_403872_+	riboflavin transporter	NA	NA	NA	NA	NA
VFI14909.1|403861_404512_+	phosphatase	NA	NA	NA	NA	NA
VFI14911.1|404539_404929_+	putative histone acetyltransferase	NA	NA	NA	NA	NA
VFI14913.1|404933_405383_+	sortase-like acyltransferase	NA	NA	NA	NA	NA
VFI14915.1|405510_406098_+	DNA-dependent RNA Polymerase, delta subunit (RNAP delta factor)	NA	NA	NA	NA	NA
VFI14917.1|406487_408095_+	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	8.9e-142
VFI14919.1|408653_410285_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
VFI14921.1|410577_415557_+	endo-beta-N-acetylglucosaminidase	NA	NA	NA	NA	NA
VFI14923.1|415646_416843_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
VFI14925.1|416978_417506_+	signal peptide	NA	NA	NA	NA	NA
VFI14927.1|417582_417939_+	transcriptional repressor of the glutamine synthetase gene	NA	NA	NA	NA	NA
VFI14929.1|417975_419322_+	glutamate-ammonia ligase	NA	NA	NA	NA	NA
VFI14931.1|419501_419651_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI14933.1|420102_421617_+	type I restriction-modification system S protein	NA	A0A1B1P773	Bacillus_phage	48.9	2.4e-48
VFI14935.1|421733_422537_-	Fic protein family	NA	NA	NA	NA	NA
VFI14937.1|422813_423569_-	Zn-finger	NA	NA	NA	NA	NA
VFI14939.1|423638_426290_-|tRNA	valyl-tRNA synthetase	tRNA	A0A1V0S951	Catovirus	41.1	1.6e-151
VFI14941.1|426301_427264_-	putative uncharacterized protein (hydrophilic)	NA	NA	NA	NA	NA
VFI14943.1|427265_427823_-	GNAT family acetyltransferase	NA	NA	NA	NA	NA
VFI14945.1|427809_428259_-	conserved protein/domain typically associated with flavoprotein oxygenase, Dim6/ntab family	NA	NA	NA	NA	NA
VFI14947.1|428670_429066_-	Helicase	NA	NA	NA	NA	NA
VFI14949.1|429161_429416_-	aldose 1-epimerase	NA	NA	NA	NA	NA
VFI14951.1|429425_430760_-	hemerythrin HHE cation binding domain subfamily	NA	NA	NA	NA	NA
VFI14953.1|430759_430993_-	Domain of uncharacterised function (DUF1858)	NA	NA	NA	NA	NA
VFI14955.1|431023_431221_+	chlorohydrolase	NA	NA	NA	NA	NA
VFI14957.1|431498_431681_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI14959.1|431682_432462_-	ABC transporter ATPase	NA	NA	NA	NA	NA
VFI14961.1|432740_433091_-	ribosome-binding factor A	NA	NA	NA	NA	NA
VFI14963.1|433341_436134_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	22.9	3.3e-19
VFI14965.1|436150_436450_-	L7A family ribosomal protein	NA	NA	NA	NA	NA
VFI14967.1|436442_436736_-	cytosolic protein YlxR	NA	NA	NA	NA	NA
VFI14969.1|436757_437882_-	transcription elongation factor NusA	NA	NA	NA	NA	NA
VFI14971.1|437937_438417_-	SP14.3 protein	NA	NA	NA	NA	NA
VFI14973.1|438542_439178_-|tRNA	tRNA (guanine-N(7)-)-methyltransferase	tRNA	NA	NA	NA	NA
VFI14975.1|439174_439969_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
VFI14977.1|440129_440741_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
VFI14979.1|440891_441125_-	immunity protein BlpZ	NA	NA	NA	NA	NA
VFI14981.1|441166_441856_-|protease	metal-dependent CAAX amino terminal membrane protease	protease	NA	NA	NA	NA
VFI14983.1|441907_442291_-	putative immunity protein BlpX	NA	NA	NA	NA	NA
VFI14985.1|442919_443291_-	immunity protein BlpL	NA	NA	NA	NA	NA
VFI14987.1|443300_443462_-	immunity protein	NA	NA	NA	NA	NA
VFI14989.1|444374_444623_-|bacteriocin	bacteriocin BlpK	bacteriocin	NA	NA	NA	NA
VFI14991.1|444691_444961_-|bacteriocin	bacteriocin BlpJ	bacteriocin	NA	NA	NA	NA
VFI14993.1|445427_445625_-|bacteriocin	bacteriocin BlpI	bacteriocin	NA	NA	NA	NA
VFI14995.1|445913_446501_+|protease,bacteriocin	bacteriocin transporter C39 protease domain BlpA2	protease,bacteriocin	NA	NA	NA	NA
VFI14997.1|446445_448071_+	competence factor transporting ATP-binding protein/permease ComA	NA	W8CYL7	Bacillus_phage	27.3	2.4e-41
VFI14999.1|448081_449443_+	BlpC ABC transporter	NA	NA	NA	NA	NA
VFI15001.1|449499_449628_+|bacteriocin	peptide pheromone BlpC (bacteriocin-like peptide)	bacteriocin	NA	NA	NA	NA
VFI15003.1|449698_451039_-	BlpH histidine kinase TCS13	NA	NA	NA	NA	NA
VFI15005.1|451052_451790_-	response regulator	NA	NA	NA	NA	NA
VFI15007.1|451794_452133_-	regulatory protein, single domain response regulator	NA	NA	NA	NA	NA
VFI15009.1|452408_452738_+	BlpT protein, fusion	NA	NA	NA	NA	NA
452779:452811	attL	GCTGACGTGGTTTGAAGAGATTTTCGAAGAGTA	NA	NA	NA	NA
VFI15011.1|452905_453955_-	ABC transporter permease	NA	NA	NA	NA	NA
VFI15013.1|453951_454683_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	5.3e-25
VFI15015.1|454750_455161_+	protein hit	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
VFI15017.1|455170_455458_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI15019.1|456147_457284_-	dnaJ protein, Heat-shock protein (activation of DnaK)	NA	E3T4P7	Cafeteria_roenbergensis_virus	31.3	2.4e-24
VFI15021.1|457894_458041_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI15023.1|458042_459866_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	1.3e-133
VFI15025.1|460345_460870_-	heat shock protein GrpE	NA	NA	NA	NA	NA
VFI15027.1|460896_461931_-	heat-inducible transcription repressor	NA	NA	NA	NA	NA
VFI15029.1|462094_462604_-	Protein of uncharacterised function (DUF2812)	NA	NA	NA	NA	NA
VFI15031.1|463210_465544_+	type I restriction-modification system, R subunit	NA	Q5YA94	Bacillus_phage	24.8	5.8e-25
VFI15033.1|465556_467020_+	type I restriction-modification system M protein	NA	NA	NA	NA	NA
VFI15035.1|467019_468588_+	type I site-specific deoxyribonuclease chain S	NA	NA	NA	NA	NA
VFI15037.1|468644_469442_+|integrase	integrase/recombinase, phage integrase family	integrase	A0A0H4TI16	Erysipelothrix_phage	28.7	1.3e-21
VFI15039.1|469512_470055_+	type I restriction modification DNA specificity domain-containing protein	NA	NA	NA	NA	NA
VFI15041.1|470002_471025_-	type I restriction enzyme	NA	A0A1V0SLK8	Klosneuvirus	25.6	6.5e-13
VFI15043.1|471214_472222_+	DNA or RNA helicases of superfamily II	NA	NA	NA	NA	NA
VFI15045.1|472318_473998_+	DNA or RNA helicases of superfamily II	NA	A0A0P0BWW9	Ostreococcus_lucimarinus_virus	29.0	3.1e-28
VFI15047.1|474297_475137_+	transcription antiterminator LicT	NA	NA	NA	NA	NA
VFI15049.1|475154_476993_+	PTS system beta-glucoside-specific transporter subunit EIIABC	NA	NA	NA	NA	NA
VFI15051.1|477005_478421_+	beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	23.7	9.6e-23
VFI15053.1|479012_480059_+|tRNA	phenylalanyl-tRNA synthetase, alpha chain	tRNA	A0A2I2L4E3	Orpheovirus	32.8	1.6e-27
VFI15055.1|480058_480568_+	acetyltransferase, GNAT family	NA	NA	NA	NA	NA
VFI15057.1|480644_483047_+|tRNA	phenylalanyl-tRNA synthetase, beta chain	tRNA	NA	NA	NA	NA
VFI15059.1|483114_484116_-	endonuclease/exonuclease/phosphatase family	NA	NA	NA	NA	NA
VFI15061.1|484271_484574_+|transposase	IS1239, transposase	transposase	NA	NA	NA	NA
VFI15063.1|484913_485111_+	transcriptional regulator	NA	NA	NA	NA	NA
VFI15065.1|485371_487621_+	5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase	NA	NA	NA	NA	NA
VFI15067.1|487684_488551_+	5,10-methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
VFI15069.1|489235_491449_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
VFI15071.1|491464_492082_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
VFI15073.1|492093_492978_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
VFI15075.1|493059_494403_+|tRNA	cysteinyl-tRNA synthetase	tRNA	M1PG92	Moumouvirus	35.8	6.9e-47
505532:505564	attR	GCTGACGTGGTTTGAAGAGATTTTCGAAGAGTA	NA	NA	NA	NA
>prophage 6
LR216050	Streptococcus pneumoniae isolate GPS_US_PATH396-sc-2296505 genome assembly, chromosome: 1	2074861	670923	783055	2074861	transposase,integrase,tRNA,protease	Streptococcus_phage(16.13%)	106	763095:763154	766515:766999
VFI15419.1|670923_672921_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SEZ7	Hokovirus	30.8	8.1e-84
VFI15420.1|672970_673297_+	chlorohydrolase	NA	NA	NA	NA	NA
VFI15422.1|673386_673707_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
VFI15424.1|673710_674526_+	membrane protein	NA	NA	NA	NA	NA
VFI15426.1|674600_675527_+	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA	NA
VFI15428.1|675622_675859_+|tRNA	methionine--tRNA ligase	tRNA	NA	NA	NA	NA
VFI15430.1|675851_676550_+	short chain dehydrogenase	NA	A0A0K0KVL6	Prochlorococcus_phage	30.9	2.1e-07
VFI15432.1|676560_677040_+	NTP pyrophosphohydrolase including oxidative damage repair enzymes	NA	NA	NA	NA	NA
VFI15434.1|677077_677776_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
VFI15436.1|677817_678687_+	PEP-utilizing enzyme family protein	NA	NA	NA	NA	NA
VFI15438.1|678661_679102_+	acetyltransferase	NA	NA	NA	NA	NA
VFI15440.1|679224_681771_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	27.2	1.3e-73
VFI15442.1|681828_682521_-|transposase	IS1167, transposase	transposase	A0A1S5SBP9	Streptococcus_phage	97.8	9.8e-122
VFI15444.1|682738_683413_+	DNA-binding response regulator CiaR	NA	W8CYM9	Bacillus_phage	33.6	3.1e-27
VFI15446.1|683402_684737_+	histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	34.0	1.2e-06
VFI15448.1|684770_685058_-	membrane protein	NA	NA	NA	NA	NA
VFI15450.1|685197_686127_+	U32 family peptidase	NA	NA	NA	NA	NA
VFI15452.1|686326_688777_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	46.9	2.5e-196
VFI15454.1|688813_690037_+	RodA	NA	NA	NA	NA	NA
VFI15456.1|690047_690602_+	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	27.2	6.4e-07
VFI15458.1|690677_691250_+	phosphatase	NA	NA	NA	NA	NA
VFI15460.1|691264_693211_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	45.6	3.2e-146
VFI15462.1|693292_695020_+	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
VFI15464.1|695748_696072_-|transposase	transposase, ISSmi4	transposase	NA	NA	NA	NA
VFI15466.1|696332_696632_-	Domain of uncharacterised function (DUF1827)	NA	NA	NA	NA	NA
VFI15468.1|696796_697060_-	mutT/nudix family protein	NA	NA	NA	NA	NA
VFI15470.1|697329_697659_+|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
VFI15472.1|698382_700641_-|protease	ATP-dependent Clp protease, ATP-binding subunit	protease	K4FB40	Cronobacter_phage	40.4	4.6e-128
VFI15474.1|700869_701100_-	Protein of uncharacterised function (DUF1797)	NA	NA	NA	NA	NA
VFI15476.1|701289_701973_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
VFI15478.1|701972_702707_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	43.1	1.3e-36
VFI15480.1|702860_703718_+	FolD bifunctional protein; includes: methylenetetrahydrofolate dehydrogenase, methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	41.5	1.5e-39
VFI15482.1|703854_704676_+	ABC-type phosphate transport system, ATPase component	NA	NA	NA	NA	NA
VFI15484.1|704689_705529_+	carbohydrate kinase	NA	NA	NA	NA	NA
VFI15486.1|705826_706510_+	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
VFI15488.1|706523_707735_+	phosphopentomutase	NA	NA	NA	NA	NA
VFI15490.1|707736_708147_+	phosphopentomutase	NA	NA	NA	NA	NA
VFI15492.1|708293_709103_+	purine nucleoside phosphorylase	NA	NA	NA	NA	NA
VFI15494.1|709566_709974_+	topology modulation protein	NA	NA	NA	NA	NA
VFI15496.1|709983_710559_+	thiol-activated cytolysin	NA	NA	NA	NA	NA
VFI15498.1|710583_711096_+	pneumolysin	NA	NA	NA	NA	NA
VFI15500.1|711753_712464_+	purine nucleoside phosphorylase	NA	NA	NA	NA	NA
VFI15502.1|712486_713011_-	topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	40.6	4.5e-26
VFI15504.1|713063_713300_-	putative 30S ribosomal protein S20	NA	NA	NA	NA	NA
VFI15506.1|713367_714288_-	pantothenate kinase	NA	NA	NA	NA	NA
VFI15508.1|714477_714882_+	membrane protein (pseudogene)	NA	NA	NA	NA	NA
VFI15510.1|715088_715679_+	16S RNA G1207 methylase RsmC	NA	NA	NA	NA	NA
VFI15512.1|715675_716953_+	thymidine phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	51.6	2.1e-114
VFI15514.1|716970_717633_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
VFI15516.1|717619_718009_+	cytidine deaminase	NA	NA	NA	NA	NA
VFI15518.1|718098_719151_+	lipoprotein	NA	NA	NA	NA	NA
VFI15520.1|719294_720830_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.5	1.4e-19
VFI15522.1|720822_721881_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
VFI15524.1|721883_722840_+	ABC transporter, membrane-spanning permease	NA	NA	NA	NA	NA
VFI15526.1|722924_723137_+|transposase	transposase	transposase	NA	NA	NA	NA
VFI15528.1|723272_723440_+|transposase	IS3-Spn1 transposase	transposase	NA	NA	NA	NA
VFI15530.1|723439_724273_+|integrase	integrase core domain-containing protein	integrase	A0A1B1P773	Bacillus_phage	48.5	1.4e-58
VFI15532.1|724315_724957_-	putative glycerol-3-phosphate acyltransferase PlsY	NA	NA	NA	NA	NA
VFI15534.1|725092_727036_+	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	43.0	9.2e-125
VFI15536.1|727035_727143_+	N-6 DNA methylase	NA	NA	NA	NA	NA
VFI15538.1|727491_729927_+	topoisomerase IV subunit A, ParC	NA	G3M9Z5	Bacillus_virus	31.3	1.1e-95
VFI15540.1|730058_731081_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
VFI15542.1|731136_731841_+	extracellular oligopeptide-binding protein	NA	NA	NA	NA	NA
VFI15544.1|731905_732595_+	permease	NA	NA	NA	NA	NA
VFI15546.1|732591_733515_+	permease	NA	NA	NA	NA	NA
VFI15548.1|733529_734174_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
VFI15550.1|734341_734572_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
VFI15552.1|734944_736147_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
VFI15554.1|736231_736759_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	95.4	9.8e-90
VFI15556.1|736755_737043_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	71.8	8.7e-24
VFI15558.1|737039_737297_-|transposase	degenerate transposase	transposase	A0A1S5SBP9	Streptococcus_phage	95.7	5.6e-30
VFI15560.1|737751_738249_+	GAF domain-containing protein	NA	NA	NA	NA	NA
VFI15562.1|738248_739904_+	DNA polymerase III subunits gamma and tau	NA	A0A1L2BWV7	Bacteriophage	33.5	1.1e-46
VFI15564.1|739931_740126_+	membrane protein	NA	NA	NA	NA	NA
VFI15566.1|740275_741046_+	FeS assembly ATPase SufC	NA	A0A2R8FG22	Brazilian_cedratvirus	28.5	2.5e-09
VFI15568.1|741073_742336_+	FeS assembly protein SufD	NA	NA	NA	NA	NA
VFI15570.1|742346_743573_+	class-V aminotransferase	NA	Q2XUY6	environmental_halophage	44.8	1.9e-104
VFI15572.1|743559_744000_+	nifU family protein	NA	A0A2P1CJL8	Mycobacterium_phage	39.0	3.6e-13
VFI15574.1|744053_745466_+	Iron-sulfur cluster assembly protein SufB	NA	NA	NA	NA	NA
VFI15576.1|745696_746938_-	D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 3	NA	B6DZZ7	Stx2-converting_phage	25.2	3.1e-17
VFI15578.1|747040_748150_+	putative permease	NA	NA	NA	NA	NA
VFI15580.1|749462_750203_+	transcriptional repressor of fructose operon	NA	NA	NA	NA	NA
VFI15582.1|750199_751111_+	fructose-1-phosphate kinase	NA	NA	NA	NA	NA
VFI15584.1|751107_753060_+	PTS system, fructose specific IIBC component	NA	NA	NA	NA	NA
VFI15586.1|753145_755449_+	DNA translocase, cell division protein	NA	S5VNE3	Mycobacterium_phage	49.9	1.0e-85
VFI15588.1|755493_755928_-	TBC1 domain family member 8B	NA	NA	NA	NA	NA
VFI15590.1|756065_757208_+	class-V aminotransferase	NA	NA	NA	NA	NA
VFI15592.1|757216_758431_+	thiamine biosynthesis ATP pyrophosphatase	NA	NA	NA	NA	NA
VFI15594.1|758567_759392_+	esterase	NA	NA	NA	NA	NA
VFI15596.1|759404_760571_+	carbamoylphosphate synthase large subunit	NA	NA	NA	NA	NA
VFI15598.1|761078_762572_+	type I restriction modification enzyme methylase subunit	NA	A0A2H4UVB0	Bodo_saltans_virus	30.8	1.8e-27
VFI15600.1|762584_763649_+	type I restriction-modification enzyme 1, S subunit	NA	NA	NA	NA	NA
763095:763154	attL	AAATCCCGATTTAACGAGATGTTTGGGGATCCTTTAAATAATAACAAGAAATTTGCAGTA	NA	NA	NA	NA
VFI15602.1|763708_763945_+	toxin-antitoxin system, antitoxin component,AbrB family	NA	NA	NA	NA	NA
VFI15604.1|763941_764355_+	prophage maintenance system killer protein	NA	NA	NA	NA	NA
VFI15606.1|764472_765438_+|integrase	integrase/recombinase, phage integrase family protein	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	29.6	1.4e-33
VFI15608.1|765471_766011_+	type I restriction-modification system subunit S	NA	NA	NA	NA	NA
VFI15610.1|766007_767057_+	restriction modification system DNA specificity subunit	NA	NA	NA	NA	NA
766515:766999	attR	AAATCCCGATTTAACGAGATGTTTGGGGATCCTTTAAATAATAACAAGAAATTTGCAGTAAAAACGGGACAACAGTGTTTTAAATTTTCAAGTGGAAAATTTCTTGATAAACATGATAGAGTTTTTGAAGGTTATCCTGCCTATGGTGGAAATGGCATTGCTTGGAAAAGTCGAAAATATTTAATTGATAATCCTACTATCATCATTGGTCGTGTAGGTGCATATTGTGGTAATGTAAGAACTACCCACGGTAAGGTATGGATAAGTGACAATGCTATATATATAAAAGAATTTAAGAATTCCGATTTCAATCTTGTATTTTTATTAGAATTAATGAAAGTAATTGATTTTAGTAAATTTGCTGATTTCTCAGGTCAACCAAAGATAACTCAAAAACCATTAGAAAATCAGAAATATATCCTCCCCCCTCTAGCCCTCCAAAATGAGTTCGCAGACTTTGTAGCCCTGGTCGACAAATCACAATT	NA	NA	NA	NA
VFI15612.1|767086_770437_+	type I restriction-modification system R subunit	NA	A0A2H4P9W3	Gordonia_phage	24.8	3.1e-11
VFI15614.1|770707_770908_+	chlorohydrolase	NA	NA	NA	NA	NA
VFI15616.1|771024_771495_-	arginine repressor	NA	NA	NA	NA	NA
VFI15618.1|771511_773785_-	x-prolyl-dipeptidyl aminopeptidase	NA	NA	NA	NA	NA
VFI15620.1|774130_777232_+	DNA-polymerase III alpha-chain	NA	A0A291AWR1	Streptomyces_phage	32.6	4.4e-113
VFI15622.1|777314_778322_+	6-phosphofructokinase	NA	NA	NA	NA	NA
VFI15624.1|778380_779886_+	pyruvate kinase	NA	NA	NA	NA	NA
VFI15626.1|781692_782565_+	lipoprotein, putative	NA	NA	NA	NA	NA
VFI15628.1|782671_783055_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
>prophage 7
LR216050	Streptococcus pneumoniae isolate GPS_US_PATH396-sc-2296505 genome assembly, chromosome: 1	2074861	793801	840325	2074861	holin,transposase,tRNA,protease	Streptococcus_phage(45.0%)	54	NA	NA
VFI15656.1|793801_794797_-|transposase	IS1239 transposase	transposase	H7BUM7	unidentified_phage	34.2	1.7e-34
VFI15658.1|795503_796979_+	ornithine decarboxylase family protein	NA	NA	NA	NA	NA
VFI15660.1|796944_797415_-	pilin gene inverting-like protein	NA	NA	NA	NA	NA
VFI15662.1|797537_797660_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VFI15664.1|797915_798776_+	spermidine synthase	NA	NA	NA	NA	NA
VFI15666.1|798772_800032_+	dehydrogenase family protein, saccharopine dehydrogenase	NA	NA	NA	NA	NA
VFI15668.1|800031_801159_+	LysA-like decarboxylase, diaminopimelate decarboxylase putative	NA	NA	NA	NA	NA
VFI15670.1|801155_802241_+	agmatine deiminase	NA	M1HES8	Acanthocystis_turfacea_Chlorella_virus	47.4	5.9e-89
VFI15672.1|802250_803126_+	carbon-nitrogen hydrolase family protein	NA	M1H5W0	Paramecium_bursaria_Chlorella_virus	50.0	1.1e-77
VFI15674.1|803306_804116_-	Cof family protein	NA	NA	NA	NA	NA
VFI15676.1|804387_804609_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI15678.1|804662_805334_+|protease	caax amino protease family protein	protease	NA	NA	NA	NA
VFI15680.1|805575_806484_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	3.1e-06
VFI15682.1|806480_806942_+	lipoprotein signal peptidase, signal peptidase type II	NA	NA	NA	NA	NA
VFI15684.1|806931_807819_+	23S rluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.0	1.7e-09
VFI15686.1|807821_809705_+|holin	choline binding protein E CbpE	holin	Q332B9	Clostridium_botulinum_C_phage	22.9	1.2e-09
VFI15688.1|809805_810915_+	gamma-glutamyl kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	8.4e-115
VFI15690.1|810924_812187_+	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	64.3	4.2e-139
VFI15692.1|812190_812988_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.2	8.0e-59
VFI15694.1|813207_813846_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	68.1	1.3e-75
VFI15696.1|813842_814733_+	DNA polymerase III, delta' subunit	NA	M1NSC1	Streptococcus_phage	51.7	4.9e-73
VFI15698.1|814772_815090_+	DNA replication intiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
VFI15700.1|815092_815962_+	tetrapyrrole methylase	NA	M1PLC5	Streptococcus_phage	75.4	3.8e-115
VFI15702.1|816188_816707_+	DUF1706 domain-containing protein	NA	NA	NA	NA	NA
VFI15704.1|816815_816953_+	phage protein, point mutation	NA	NA	NA	NA	NA
VFI15706.1|816959_817394_+	phage protein	NA	A0A2P0VK56	Streptococcus_phage	40.0	4.6e-08
VFI15708.1|817451_817841_-	fusion of IS1381 orf A and B	NA	NA	NA	NA	NA
VFI15710.1|817857_818256_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
VFI15712.1|818799_820134_+|tRNA	tRNA (uracil-5-)-methyltransferase Gid	tRNA	NA	NA	NA	NA
VFI15714.1|820217_820955_+	uridylate kinase	NA	NA	NA	NA	NA
VFI15716.1|820963_821521_+	ribosome-recycling factor	NA	NA	NA	NA	NA
VFI15718.1|821580_822435_+	s1 RNA binding domain protein	NA	NA	NA	NA	NA
VFI15720.1|822443_822659_+	serine-type D-Ala-D-Ala carboxypeptidase	NA	NA	NA	NA	NA
VFI15722.1|822744_823713_+	PhoH family protein	NA	W8D063	Erwinia_phage	47.9	5.9e-48
VFI15724.1|823905_824118_+	acetyltransferase	NA	NA	NA	NA	NA
VFI15726.1|824131_824407_+	acetyltransferase	NA	NA	NA	NA	NA
VFI15728.1|824409_824553_+	TfoX N- domain family protein	NA	NA	NA	NA	NA
VFI15730.1|825035_825311_-	alanine dehydrogenase	NA	NA	NA	NA	NA
VFI15732.1|825307_825571_-	alanine dehydrogenase	NA	NA	NA	NA	NA
VFI15734.1|825721_826147_-	alanine dehydrogenase	NA	NA	NA	NA	NA
VFI15736.1|826323_826893_+	acetyltransferase	NA	NA	NA	NA	NA
VFI15738.1|826960_827611_+	competence protein	NA	NA	NA	NA	NA
VFI15740.1|827594_829835_+	competence protein CelB	NA	M1PSD2	Streptococcus_phage	52.7	2.0e-46
VFI15742.1|830234_830822_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	6.1e-16
VFI15744.1|830825_832010_+	ABC-type transport system involved in multi-copper enzyme maturation, permease component	NA	NA	NA	NA	NA
VFI15746.1|832263_832851_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	32.1	2.7e-11
VFI15748.1|832883_833084_+	LSU ribosomal protein L35p	NA	NA	NA	NA	NA
VFI15750.1|833135_833495_+	LSU ribosomal protein L20p	NA	NA	NA	NA	NA
VFI15752.1|833552_833933_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
VFI15754.1|834182_834983_+	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA	NA
VFI15756.1|834993_835932_+	dihydroorotate dehydrogenase 1B	NA	NA	NA	NA	NA
VFI15758.1|836030_838007_+	endo-beta-N-acetylglucosaminidase	NA	A0A143FPM9	Bacillus_phage	42.6	8.4e-25
VFI15760.1|838067_839723_-	fibronectin/fibrinogen binding protein	NA	A0A1J0F9J4	Only_Syngen_Nebraska_virus	36.5	4.7e-05
VFI15762.1|839827_840325_+|protease	putative metalloprotease	protease	NA	NA	NA	NA
>prophage 8
LR216050	Streptococcus pneumoniae isolate GPS_US_PATH396-sc-2296505 genome assembly, chromosome: 1	2074861	896460	917163	2074861	protease	Streptococcus_phage(100.0%)	22	NA	NA
VFI15892.1|896460_897819_+	putative DNA methylase	NA	A0A141E1L1	Streptococcus_phage	56.3	8.6e-130
VFI15895.1|897802_898252_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI15898.1|898244_898625_+	arsenate reductase-like glutaredoxin family protein	NA	NA	NA	NA	NA
VFI15901.1|898637_898871_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI15904.1|898873_899476_+|protease	Tn5253 CAAX amino terminal protease family	protease	NA	NA	NA	NA
VFI15907.1|899637_900855_-	Mobile element protein	NA	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
VFI15910.1|900936_901140_-	Mobile element protein	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
VFI15913.1|901600_901831_-	Helix-turn-helix domain	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
VFI15916.1|901827_902250_-	RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
VFI15919.1|902754_903108_+	anaerobic benzoate catabolism transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
VFI15922.1|903453_905373_-	tetracycline resistance protein TetM	NA	A0A1S5SF82	Streptococcus_phage	98.7	0.0e+00
VFI15924.1|905749_906667_-	putative conjugative transposon protein	NA	A0A1S5SF22	Streptococcus_phage	99.0	1.0e-166
VFI15927.1|906681_907683_-	lipoprotein, NLP/P60 family	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
VFI15930.1|907679_909791_-	Tn916 ORF15 signal peptide containing protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
VFI15933.1|909859_912307_-	Type IV secretory pathway, VirB4 components	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
VFI15936.1|912290_912797_-	TcpE family	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
VFI15939.1|912771_913269_-	Antirestriction protein	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
VFI15942.1|913385_913607_-	FIG086557: Conjugation related protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
VFI15945.1|913649_914855_-	transcriptional regulator protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
VFI15948.1|915032_916418_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
VFI15951.1|916446_916830_-	Bacterial protein of uncharacterised function (DUF961)	NA	A0A1S5SF96	Streptococcus_phage	100.0	2.3e-64
VFI15954.1|916848_917163_-	Bacterial protein of uncharacterised function (DUF961)	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
>prophage 9
LR216050	Streptococcus pneumoniae isolate GPS_US_PATH396-sc-2296505 genome assembly, chromosome: 1	2074861	1001802	1060139	2074861	transposase,protease	Streptococcus_phage(46.15%)	46	NA	NA
VFI16192.1|1001802_1002477_+|transposase	degenerate transposase (orf1)	transposase	NA	NA	NA	NA
VFI16195.1|1002492_1002891_+	mobile genetic element	NA	NA	NA	NA	NA
VFI16198.1|1003081_1005373_+	ATP-dependent DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.1	5.5e-129
VFI16201.1|1005415_1006096_+	DNA repair protein RadC	NA	NA	NA	NA	NA
VFI16204.1|1006092_1006782_-	glutamine amidotransferase, class I	NA	NA	NA	NA	NA
VFI16207.1|1006799_1007441_-	DNA-binding protein	NA	NA	NA	NA	NA
VFI16210.1|1007523_1007739_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI16213.1|1007746_1008094_-	cytosolic protein	NA	NA	NA	NA	NA
VFI16216.1|1008098_1009214_-	aminotransferase class-V	NA	H7BUW1	unidentified_phage	36.8	1.0e-27
VFI16219.1|1009223_1010183_-	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	32.8	9.3e-38
VFI16222.1|1010295_1010865_-	adenylate cyclase	NA	NA	NA	NA	NA
VFI16225.1|1010992_1011664_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
VFI16228.1|1011647_1012466_+	putative sugar kinase	NA	NA	NA	NA	NA
VFI16231.1|1012462_1013359_+	23S_rRNA pseudouridine synthase	NA	NA	NA	NA	NA
VFI16234.1|1013402_1014377_+	phosphotransacetylase	NA	NA	NA	NA	NA
VFI16236.1|1014637_1015165_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	95.4	1.4e-88
VFI16239.1|1015161_1015449_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	68.2	2.8e-22
VFI16242.1|1015445_1015964_-|transposase	IS1167 transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.1	1.7e-78
VFI16245.1|1016145_1016445_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
VFI16249.1|1016858_1017551_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
VFI16252.1|1017732_1018047_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
VFI16255.1|1018062_1018407_+	ribosomal protein	NA	NA	NA	NA	NA
VFI16258.1|1018423_1018717_+	LSU ribosomal protein L27p	NA	NA	NA	NA	NA
VFI16261.1|1019669_1020587_+	bifunctional riboflavin kinase/FMN adenylyltransferase	NA	NA	NA	NA	NA
VFI16264.1|1020679_1021528_-	YpjC	NA	M1Q1P6	Streptococcus_phage	46.5	1.4e-64
VFI16267.1|1021669_1022509_+	DegV family protein	NA	NA	NA	NA	NA
VFI16270.1|1022615_1022891_+	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	66.3	9.2e-23
VFI16273.1|1023320_1025222_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.5	1.5e-50
VFI16276.1|1025224_1026088_+	transcriptional regulator MutR	NA	NA	NA	NA	NA
VFI16279.1|1026167_1027346_+	macrolide efflux ABC transporter membrane-spanning permease	NA	NA	NA	NA	NA
VFI16282.1|1027438_1029397_+	DNA ligase	NA	A0A1W6DX16	Sphingobium_phage	35.7	1.0e-99
VFI16285.1|1029515_1031795_+	pullulanase	NA	NA	NA	NA	NA
VFI16288.1|1032339_1033764_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
VFI16291.1|1034246_1036175_+	1,4-alpha-glucan branching enzyme	NA	NA	NA	NA	NA
VFI16294.1|1036164_1037307_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
VFI16297.1|1037296_1038436_+	glycogen biosynthesis protein	NA	NA	NA	NA	NA
VFI16300.1|1038432_1039866_+	glycogen synthase	NA	NA	NA	NA	NA
VFI16303.1|1039924_1040296_+	phosphoserine phosphatase	NA	NA	NA	NA	NA
VFI16306.1|1040578_1041382_+	glycerate kinase-family protein	NA	W6LM47	Streptococcus_phage	35.0	1.4e-34
VFI16309.1|1041378_1041825_-	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VFI16312.1|1041988_1043293_+	Enolase	NA	W6LP63	Streptococcus_phage	94.5	4.7e-234
VFI16315.1|1044259_1044610_-|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
VFI16318.1|1045135_1048411_+	exonuclease RexB	NA	NA	NA	NA	NA
VFI16321.1|1048407_1052058_+	ATP-dependent exoDNAse subunit beta	NA	G3MA40	Bacillus_virus	25.3	8.8e-20
VFI16324.1|1052272_1053451_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI16327.1|1053659_1060139_+|protease	IgA-protease	protease	NA	NA	NA	NA
>prophage 10
LR216050	Streptococcus pneumoniae isolate GPS_US_PATH396-sc-2296505 genome assembly, chromosome: 1	2074861	1115805	1180037	2074861	holin,bacteriocin,tRNA,protease	Bacillus_phage(18.75%)	60	NA	NA
VFI16476.1|1115805_1116108_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VFI16479.1|1116104_1116200_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
VFI16482.1|1116368_1117247_-|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
VFI16485.1|1117256_1118531_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VFI16488.1|1118626_1119742_-	O-acetylhomoserine sulfhydrylase	NA	NA	NA	NA	NA
VFI16491.1|1119763_1119886_-	O-acetylhomoserine sulfhydrylase	NA	NA	NA	NA	NA
VFI16494.1|1120033_1120831_-	formate/nitrate transporter	NA	NA	NA	NA	NA
VFI16497.1|1121074_1121818_-	sortase SrtA	NA	NA	NA	NA	NA
VFI16500.1|1121817_1124286_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.5	3.5e-105
VFI16503.1|1124479_1125466_+	L-lactate dehydrogenase 1	NA	NA	NA	NA	NA
VFI16506.1|1125851_1129106_-	type II restriction endonuclease	NA	NA	NA	NA	NA
VFI16509.1|1129270_1131157_-	type II restriction endonuclease	NA	A0A1V0SF91	Hokovirus	23.7	1.1e-10
VFI16512.1|1131231_1131495_-	cytotoxic translational repressor of toxin-antitoxin stability system	NA	NA	NA	NA	NA
VFI16515.1|1131487_1131730_-	toxin-antitoxin system, antitoxin component, ribbon-helix-helix fold protein	NA	NA	NA	NA	NA
VFI16518.1|1131820_1132630_-	metallo-beta-lactamase superfamily protein	NA	A0A0C5AFC1	Paenibacillus_phage	39.0	1.8e-34
VFI16521.1|1132631_1133981_-	histidine kinase	NA	W8CYF6	Bacillus_phage	34.6	1.8e-34
VFI16523.1|1133973_1134678_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	39.8	2.8e-39
VFI16526.1|1134732_1135908_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
VFI16529.1|1136235_1137906_-	formate-tetrahydrofolate ligase	NA	NA	NA	NA	NA
VFI16532.1|1138135_1138825_+	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
VFI16535.1|1138836_1139388_+	flavoprotein involved in panthothenate metabolism	NA	A0A068EHP1	Penguinpox_virus	37.6	3.1e-25
VFI16538.1|1139371_1139935_+	membrane protein	NA	NA	NA	NA	NA
VFI16541.1|1140217_1140745_+	membrane protein	NA	NA	NA	NA	NA
VFI16544.1|1140756_1141272_+	transcriptional regulator	NA	NA	NA	NA	NA
VFI16547.1|1141268_1141736_-	MutT/nudix family protein	NA	NA	NA	NA	NA
VFI16550.1|1141809_1142298_-	acetyltransferase, gnat family	NA	NA	NA	NA	NA
VFI16553.1|1142263_1142791_-	acetyltransferase	NA	NA	NA	NA	NA
VFI16556.1|1142836_1144825_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
VFI16559.1|1144901_1145855_-|protease	caax amino protease family protein	protease	NA	NA	NA	NA
VFI16562.1|1146024_1148190_+	glutamine ABC transporter permease	NA	NA	NA	NA	NA
VFI16565.1|1148189_1148930_+	phosphate ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	27.3	2.8e-18
VFI16568.1|1149078_1150566_+	glucose-6-phosphate 1-dehydrogenase	NA	H6WFS4	Cyanophage	32.6	2.7e-68
VFI16571.1|1150611_1151901_-	cell division protein FtsY	NA	NA	NA	NA	NA
VFI16574.1|1151904_1152723_-	Cof family protein	NA	NA	NA	NA	NA
VFI16577.1|1152722_1153517_-	Cof family protein	NA	NA	NA	NA	NA
VFI16579.1|1153513_1157053_-	chromosome condensation and segregation SMC protein	NA	NA	NA	NA	NA
VFI16582.1|1157043_1157742_-	ribonuclease III	NA	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	33.8	3.9e-25
VFI16585.1|1158059_1159046_-	GMP reductase	NA	G3MBI2	Bacillus_virus	72.2	1.1e-137
VFI16588.1|1159220_1160558_-	McrBC 5-methylcytosine restriction system component	NA	NA	NA	NA	NA
VFI16591.1|1160523_1162455_-	endonuclease	NA	K4I1H4	Acidithiobacillus_phage	33.7	1.8e-16
VFI16594.1|1162620_1162791_-	translation factor	NA	NA	NA	NA	NA
VFI16597.1|1162771_1163038_-	translation factor	NA	NA	NA	NA	NA
VFI16600.1|1163405_1163765_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
VFI16603.1|1163768_1164038_-	membrane protein	NA	NA	NA	NA	NA
VFI16606.1|1164034_1165072_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
VFI16609.1|1165083_1165503_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
VFI16612.1|1165737_1166178_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	37.5	3.7e-05
VFI16615.1|1166196_1166853_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VFI16618.1|1166896_1167529_-	copper homeostasis protein	NA	NA	NA	NA	NA
VFI16621.1|1167621_1167981_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
VFI16624.1|1168086_1170174_-	DNA topoisomerase I	NA	A0A1V0SCS0	Indivirus	37.5	8.7e-105
VFI16627.1|1170340_1171384_-	membrane protein	NA	NA	NA	NA	NA
VFI16630.1|1172267_1173116_-	DNA processing protein DprA	NA	S6BFL3	Thermus_phage	39.5	4.2e-34
VFI16633.1|1173211_1173901_-|holin	CTP:phosphocholine cytidylyltransferase	holin	A0A127AW70	Bacillus_phage	45.0	3.4e-05
VFI16636.1|1173912_1174791_-	drug/metabolite transporter (DMT) superfamily permease	NA	NA	NA	NA	NA
VFI16639.1|1174780_1175650_-|holin	choline kinase	holin	NA	NA	NA	NA
VFI16642.1|1175666_1176689_-	zinc-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
VFI16645.1|1176693_1177401_-	cytidylyltransferase	NA	NA	NA	NA	NA
VFI16648.1|1177736_1179224_+	teichoic acid subunit flippase	NA	NA	NA	NA	NA
VFI16651.1|1179233_1180037_+|holin	phosphorylcholine transferase LicD1	holin	A0A1V0SD50	Indivirus	27.1	4.0e-10
>prophage 11
LR216050	Streptococcus pneumoniae isolate GPS_US_PATH396-sc-2296505 genome assembly, chromosome: 1	2074861	1203758	1229074	2074861	transposase,protease	Bacillus_phage(50.0%)	27	NA	NA
VFI16732.1|1203758_1204010_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI16735.1|1204553_1205900_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
VFI16738.1|1206405_1206576_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
VFI16741.1|1206588_1207035_-	multidrug resistance protein 1 (ATP-binding cassettesub-family B member 1) (P-glycoprotein 1)(antigen)	NA	W8CYL7	Bacillus_phage	45.7	1.9e-09
VFI16744.1|1207224_1207572_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI16747.1|1207588_1207987_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
VFI16750.1|1208079_1208238_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI16753.1|1208832_1209273_-|transposase	transposase	transposase	A0A218MNE7	uncultured_virus	24.6	1.9e-06
VFI16756.1|1209726_1210050_-|transposase	IS66-Spn1 transposase	transposase	NA	NA	NA	NA
VFI16759.1|1210030_1210447_-	IS66 family Orf1	NA	NA	NA	NA	NA
VFI16762.1|1210488_1211100_-	ATP synthase, subunit D	NA	NA	NA	NA	NA
VFI16765.1|1211122_1212508_-	V-type H+-ATPase, subunit B	NA	NA	NA	NA	NA
VFI16768.1|1212508_1214284_-	V-type ATP synthase subunit A	NA	NA	NA	NA	NA
VFI16771.1|1214346_1214667_-	V-type H+-ATPase, subunit F	NA	NA	NA	NA	NA
VFI16774.1|1214656_1215664_-	V-type H+-ATPase, subunit C	NA	NA	NA	NA	NA
VFI16777.1|1215728_1216310_-	V-type H+-ATPase, subunit E	NA	NA	NA	NA	NA
VFI16780.1|1216343_1216820_-	V-type H+-ATPase, subunit K	NA	NA	NA	NA	NA
VFI16783.1|1216835_1218827_-	V-type H+-ATPase, subunit I	NA	NA	NA	NA	NA
VFI16786.1|1218816_1219140_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI16789.1|1219164_1220055_-	transcriptional regulator	NA	NA	NA	NA	NA
VFI16792.1|1220211_1221321_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
VFI16795.1|1221360_1223583_-	sialidase B	NA	NA	NA	NA	NA
VFI16798.1|1223584_1224043_-	beta-galactosidase subunit beta	NA	NA	NA	NA	NA
VFI16801.1|1225630_1226548_-	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
VFI16804.1|1226572_1227274_-	N-acetylmannosamine-6-phosphate epimerase	NA	NA	NA	NA	NA
VFI16807.1|1227278_1228088_-	transcriptional regulator	NA	NA	NA	NA	NA
VFI16810.1|1228486_1229074_-|protease	Tn5253 CAAX amino terminal protease family	protease	NA	NA	NA	NA
>prophage 12
LR216050	Streptococcus pneumoniae isolate GPS_US_PATH396-sc-2296505 genome assembly, chromosome: 1	2074861	1318582	1353289	2074861	transposase,tRNA	Streptococcus_phage(23.08%)	43	NA	NA
VFI17089.1|1318582_1318825_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI17092.1|1319093_1319405_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI17095.1|1319423_1319891_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI17098.1|1320271_1320508_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI17101.1|1320488_1320674_-	IS66 family Orf1	NA	NA	NA	NA	NA
VFI17104.1|1320977_1322540_-	GMP synthase	NA	A0A1V0SH76	Hokovirus	32.8	1.4e-19
VFI17107.1|1322681_1323380_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VFI17110.1|1323422_1324319_-	membrane protein	NA	NA	NA	NA	NA
VFI17113.1|1324327_1325263_-	beta-lactamase	NA	NA	NA	NA	NA
VFI17116.1|1325259_1325985_-	cppA protein	NA	NA	NA	NA	NA
VFI17119.1|1326068_1326704_-	lysophospholipase l1-like esterase	NA	A0A2K9L661	Tupanvirus	28.2	4.3e-07
VFI17122.1|1326705_1327533_-	hydrolase	NA	NA	NA	NA	NA
VFI17125.1|1327554_1327890_-	poly-gamma-glutamate biosynthesis protein	NA	NA	NA	NA	NA
VFI17128.1|1327890_1328352_-	enzyme of poly-gamma-glutamate biosynthesis	NA	A0A0N9SJ77	Staphylococcus_phage	31.2	6.1e-11
VFI17131.1|1328329_1328626_-	membrane protein (pseudogene)	NA	NA	NA	NA	NA
VFI17134.1|1329052_1329664_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
VFI17137.1|1329708_1330437_+	TrmH family RNA methyltransferase group 3	NA	NA	NA	NA	NA
VFI17140.1|1330475_1331387_-	thioredoxin reductase	NA	G3MA85	Bacillus_virus	51.8	4.5e-90
VFI17143.1|1331452_1331677_-	membrane associated protein	NA	NA	NA	NA	NA
VFI17146.1|1331754_1332498_-	aspartate/glutamate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.0	1.6e-29
VFI17149.1|1332497_1333298_-	aspartate/glutamate ABC transporter permease	NA	NA	NA	NA	NA
VFI17152.1|1333455_1333812_-	ArsC family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
VFI17155.1|1333824_1334337_-	O6-methylguanine-DNA methyltransferase	NA	M1PFU9	Streptococcus_phage	55.6	1.3e-46
VFI17158.1|1334336_1334831_-	acetyltransferase, GNAT family protein	NA	M1PSC3	Streptococcus_phage	52.8	2.9e-43
VFI17161.1|1334965_1335412_+	BS_ykrK family protein	NA	NA	NA	NA	NA
VFI17164.1|1335408_1336056_+	hlyIII superfamily protein	NA	NA	NA	NA	NA
VFI17167.1|1336076_1336658_-	glutamine amidotransferase subunit PdxT	NA	NA	NA	NA	NA
VFI17170.1|1336658_1337534_-	pyridoxal biosynthesis lyase PdxS	NA	NA	NA	NA	NA
VFI17173.1|1337685_1339065_-	NADH oxidase	NA	NA	NA	NA	NA
VFI17176.1|1339358_1340282_+	thiamine biosynthesis lipoprotein	NA	NA	NA	NA	NA
VFI17179.1|1340341_1340947_+	NADPH-dependent FMN reductase domain-containing protein	NA	A0A2P0ZL77	Lactobacillus_phage	54.2	7.7e-54
VFI17182.1|1340965_1342210_+	flavin reductase	NA	A0A2P0ZL82	Lactobacillus_phage	52.7	1.7e-55
VFI17185.1|1342432_1342690_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VFI17188.1|1342731_1344768_-|tRNA	glycyl-tRNA synthetase beta subunit	tRNA	NA	NA	NA	NA
VFI17191.1|1344979_1345897_-|tRNA	glycyl-tRNA synthetase alpha subunit	tRNA	NA	NA	NA	NA
VFI17194.1|1345909_1346752_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI17197.1|1347027_1347870_-	2,5-diketo-D-gluconic acid reductase A	NA	A0A2H4PQR8	Staphylococcus_phage	40.2	1.3e-51
VFI17200.1|1348125_1349568_-	peptidoglycan N-acetylglucosamine deacetylase A	NA	NA	NA	NA	NA
VFI17203.1|1349898_1350129_-	ribose-phosphate pyrophosphokinase	NA	NA	NA	NA	NA
VFI17206.1|1350361_1351339_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
VFI17209.1|1351335_1352418_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.6	4.6e-33
VFI17212.1|1352481_1352991_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
VFI17215.1|1353022_1353289_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 13
LR216050	Streptococcus pneumoniae isolate GPS_US_PATH396-sc-2296505 genome assembly, chromosome: 1	2074861	1425468	1432222	2074861	protease	Streptococcus_phage(50.0%)	9	NA	NA
VFI17433.1|1425468_1426437_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	100.0	2.8e-66
VFI17436.1|1426470_1427382_-	putative sporulation transcription regulator whiA	NA	Q7AWZ3	Streptococcus_phage	99.7	1.5e-154
VFI17439.1|1427378_1428356_-	transporter	NA	A1IMD5	Streptococcus_phage	100.0	1.2e-184
VFI17442.1|1428352_1429243_-	P-loop-containing kinase	NA	A0A0R8VB27	Thermobifida_phage	29.8	6.7e-06
VFI17445.1|1429294_1429675_-	endoribonuclease L-PSP	NA	NA	NA	NA	NA
VFI17448.1|1429685_1430273_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
VFI17451.1|1430281_1431514_-|protease	ATP-dependent Clp protease, ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	5.4e-131
VFI17454.1|1431545_1431716_-	membrane associated protein	NA	NA	NA	NA	NA
VFI17457.1|1431715_1432222_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	41.9	8.7e-27
>prophage 14
LR216050	Streptococcus pneumoniae isolate GPS_US_PATH396-sc-2296505 genome assembly, chromosome: 1	2074861	1681424	1688756	2074861		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
VFI18275.1|1681424_1682126_+	putative UDP-glucose 4-epimerase	NA	A0A2K9L1R4	Tupanvirus	36.5	4.1e-35
VFI18282.1|1682548_1683508_+	iron-compound ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	4.0e-57
VFI18289.1|1683497_1684454_+	ferric iron ABC transporter membrane-spanning permease	NA	NA	NA	NA	NA
VFI18296.1|1684450_1685203_+	ferrichrome transport ATP-binding protein FhuC	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	5.6e-14
VFI18303.1|1685298_1686264_+	iron-compound ABC transporter iron-compound-binding protein	NA	NA	NA	NA	NA
VFI18306.1|1686488_1686731_-	alpha-hemolysin family protein	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	1.7e-17
VFI18313.1|1686730_1687453_-	ribosomal large subunit pseudouridine synthase B	NA	NA	NA	NA	NA
VFI18320.1|1687439_1688009_-	segregation and condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
VFI18327.1|1688027_1688756_-	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
>prophage 15
LR216050	Streptococcus pneumoniae isolate GPS_US_PATH396-sc-2296505 genome assembly, chromosome: 1	2074861	1843294	1891839	2074861	transposase,tRNA	Bacillus_phage(30.77%)	41	NA	NA
VFI19595.1|1843294_1844437_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	43.3	3.8e-86
VFI19603.1|1844566_1845424_+	putative integral membrane protein	NA	NA	NA	NA	NA
VFI19605.1|1845451_1846096_-	pyrrolidone-carboxylate peptidase (5-oxoprolyl-peptidase)	NA	NA	NA	NA	NA
VFI19613.1|1846202_1846562_-	integral membrane protein	NA	NA	NA	NA	NA
VFI19621.1|1846572_1846998_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
VFI19629.1|1847320_1848433_-	LysM domain-containing protein	NA	A0A0E3XB61	Gordonia_phage	40.5	1.4e-16
VFI19637.1|1848598_1849219_-	putative haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
VFI19639.1|1849222_1850503_-	multi antimicrobial extrusion (MATE) family transporter	NA	NA	NA	NA	NA
VFI19648.1|1850563_1852048_-	threonine synthase	NA	NA	NA	NA	NA
VFI19656.1|1852123_1853401_-	gamma-glutamylcysteine synthetase putative	NA	NA	NA	NA	NA
VFI19665.1|1854844_1855669_-|transposase	IS1380-Spn1 transposase	transposase	A0A1X9I6F6	Streptococcus_phage	39.2	6.1e-46
VFI19673.1|1856133_1857327_-	O-Antigen Polymerase family	NA	NA	NA	NA	NA
VFI19681.1|1857464_1858907_-	sucrose phosphorylase	NA	NA	NA	NA	NA
VFI19689.1|1859264_1860098_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
VFI19698.1|1860111_1860978_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
VFI19706.1|1860991_1862251_-	sugar ABC transporter binding protein	NA	NA	NA	NA	NA
VFI19714.1|1862342_1864505_-	alpha-galactosidase	NA	NA	NA	NA	NA
VFI19722.1|1864612_1865473_+	Msm operon regulatory protein	NA	NA	NA	NA	NA
VFI19731.1|1865469_1866405_+	bifunctional protein, biotin operon repressor; biotin--[acetyl-CoA-carboxylase] synthetase	NA	NA	NA	NA	NA
VFI19739.1|1866550_1867333_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	82.8	3.8e-114
VFI19747.1|1867329_1867857_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	96.0	1.3e-89
VFI19755.1|1869994_1870426_-	cytidine/deoxycytidylate deaminase	NA	NA	NA	NA	NA
VFI19767.1|1870439_1871900_-|tRNA	glutamyl-tRNA synthetase	tRNA	NA	NA	NA	NA
VFI19775.1|1872023_1873373_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
VFI19783.1|1873542_1874232_-	glutamine amidotransferase, class-I	NA	NA	NA	NA	NA
VFI19791.1|1874370_1876137_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	25.6	9.1e-39
VFI19799.1|1876289_1876598_+|transposase	transposase	transposase	A0A1B1P7S0	Bacillus_phage	39.5	3.3e-05
VFI19807.1|1876927_1878622_-	ABC transporter ATP-binding protein/permease	NA	G9BWD6	Planktothrix_phage	30.7	4.4e-14
VFI19815.1|1878768_1881303_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	21.8	8.8e-35
VFI19823.1|1881353_1881800_-	arginine repressor	NA	NA	NA	NA	NA
VFI19831.1|1881935_1883627_+|tRNA	arginyl-tRNA synthetase(arginine--tRNA ligase) (ARGRS)	tRNA	A0A2I2L3K1	Orpheovirus	32.3	1.6e-80
VFI19838.1|1883941_1884331_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI19847.1|1884670_1884973_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VFI19856.1|1885056_1885764_+	response regulator	NA	W8CYM9	Bacillus_phage	39.6	1.4e-38
VFI19864.1|1885764_1887096_+	histidine kinase PnpS	NA	W8CYF6	Bacillus_phage	34.9	1.9e-33
VFI19873.1|1887262_1888138_+	phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VFI19881.1|1888255_1889119_+	phosphate ABC transporter permeae PstC	NA	NA	NA	NA	NA
VFI19889.1|1889111_1889927_+	phosphate ABC transporter	NA	NA	NA	NA	NA
VFI19897.1|1889928_1890681_+	phosphate transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	27.4	3.9e-15
VFI19905.1|1890695_1891346_+	phosphate transport system regulatory protein PhoU	NA	NA	NA	NA	NA
VFI19913.1|1891413_1891839_+|transposase	transposase, IS1380-Spn1 related, truncation	transposase	NA	NA	NA	NA
>prophage 16
LR216050	Streptococcus pneumoniae isolate GPS_US_PATH396-sc-2296505 genome assembly, chromosome: 1	2074861	1938881	2014432	2074861	holin,transposase,protease	Klosneuvirus(11.11%)	58	NA	NA
VFI20299.1|1938881_1940807_-|holin	choline binding protein PcpA	holin	NA	NA	NA	NA
VFI20306.1|1941141_1941708_+|transposase	IS1381, transposase OrfA	transposase	NA	NA	NA	NA
VFI20314.1|1941658_1942123_+|transposase	transposase	transposase	NA	NA	NA	NA
VFI20322.1|1942192_1942519_-	Plasmid pRiA4b ORF-3-like protein	NA	NA	NA	NA	NA
VFI20330.1|1942932_1944813_-	glycosyl hydrolase family 20 (GH20) protein	NA	NA	NA	NA	NA
VFI20338.1|1944806_1945688_-	ROK family protein	NA	NA	NA	NA	NA
VFI20346.1|1945759_1948405_-	alpha mannosidase	NA	NA	NA	NA	NA
VFI20354.1|1948495_1949776_-	twin-arginine translocation pathway signal	NA	NA	NA	NA	NA
VFI20362.1|1949946_1952031_+	sugar hydrolase	NA	NA	NA	NA	NA
VFI20371.1|1952070_1953750_-	FucA	NA	NA	NA	NA	NA
VFI20379.1|1954504_1955734_+	arginine deiminase	NA	NA	NA	NA	NA
VFI20387.1|1955791_1956808_+	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
VFI20396.1|1956972_1957920_+	carbamate kinase	NA	NA	NA	NA	NA
VFI20404.1|1958130_1959642_+	C4-dicarboxylate anaerobic carrier, arginine transporter	NA	NA	NA	NA	NA
VFI20413.1|1959663_1960995_+	ArcT	NA	NA	NA	NA	NA
VFI20421.1|1961678_1961930_-	gram-positive signal peptide, ysirk family protein	NA	NA	NA	NA	NA
VFI20430.1|1962327_1963227_-	spfh domain/band 7 family	NA	A0A1V0SL90	Klosneuvirus	32.5	4.1e-35
VFI20439.1|1963356_1964508_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
VFI20446.1|1964653_1966420_-	L-fucose isomerase	NA	NA	NA	NA	NA
VFI20454.1|1966476_1969593_-	exported glycosyl hydrolase	NA	NA	NA	NA	NA
VFI20461.1|1969602_1971897_-	large secreted protein	NA	NA	NA	NA	NA
VFI20469.1|1971955_1972756_-	PTS system mannose/fructose/N -acetylgalactosamine-specific transporter subunit IID	NA	NA	NA	NA	NA
VFI20477.1|1972752_1973526_-	PTS system mannose/fructose/N -acetylgalactosamine-specific transporter subunit IIC	NA	NA	NA	NA	NA
VFI20486.1|1973550_1974021_-	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
VFI20495.1|1974011_1974455_-	PTS system IIA component	NA	NA	NA	NA	NA
VFI20504.1|1974435_1974876_-	fucose operon FucU protein	NA	NA	NA	NA	NA
VFI20511.1|1974887_1975526_-	L-fuculose phosphate aldolase	NA	NA	NA	NA	NA
VFI20520.1|1975640_1977044_-	carbohydrate kinase FGGY	NA	NA	NA	NA	NA
VFI20528.1|1977219_1977993_+	regulator of fucose operon	NA	NA	NA	NA	NA
VFI20536.1|1979154_1980660_-	ABC zinc transporter, metal-binding lipoprotein	NA	NA	NA	NA	NA
VFI20544.1|1980669_1981476_-	zinc ABC transporter permease	NA	NA	NA	NA	NA
VFI20552.1|1981468_1982173_-	ATP-binding protein, Mn	NA	W8CYL7	Bacillus_phage	26.8	5.7e-08
VFI20561.1|1982172_1982613_-	putative transcriptional repressor	NA	NA	NA	NA	NA
VFI20569.1|1982767_1984036_-	dltD protein	NA	NA	NA	NA	NA
VFI20577.1|1984028_1984268_-	D-alanyl carrier protein DCP	NA	NA	NA	NA	NA
VFI20585.1|1984281_1985526_-	transport protein DltB	NA	A0A125RNP0	Pseudomonas_phage	28.7	2.5e-22
VFI20594.1|1985522_1987073_-	D-alanine:Dcp ligase Dcl	NA	A0A2K9KZV5	Tupanvirus	28.0	6.8e-38
VFI20602.1|1987538_1988717_-	transporter major facilitator family protein	NA	NA	NA	NA	NA
VFI20611.1|1989173_1990451_-	reverse transcriptase/maturase, group FT II introns	NA	NA	NA	NA	NA
VFI20619.1|1991555_1992143_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI20628.1|1992729_1993434_-	glycerol uptake facilitator protein	NA	M1HJ77	Paramecium_bursaria_Chlorella_virus	31.7	5.3e-22
VFI20636.1|1993501_1995328_-	alpha-glycerophosphate oxidase	NA	NA	NA	NA	NA
VFI20644.1|1995369_1996878_-	glycerol kinase	NA	NA	NA	NA	NA
VFI20652.1|1997036_1998446_-	regulatory protein	NA	NA	NA	NA	NA
VFI20654.1|1998628_1999501_+	heat shock protein 3HSP33 homolog	NA	NA	NA	NA	NA
VFI20662.1|1999487_2000468_+	NifR3 family TIM-barrel protein	NA	NA	NA	NA	NA
VFI20670.1|2000686_2002375_-	surface protein PspC	NA	NA	NA	NA	NA
VFI20679.1|2002829_2002922_-	putative lipoprotein	NA	NA	NA	NA	NA
VFI20688.1|2002937_2003294_-	putative lipoprotein	NA	NA	NA	NA	NA
VFI20696.1|2003590_2004229_-	Nudix-related transcriptional regulator NrtR	NA	NA	NA	NA	NA
VFI20704.1|2004349_2004964_-	nicotinamide mononucleotide transporter	NA	I7KQU6	Yersinia_phage	32.0	8.4e-08
VFI20713.1|2004973_2005756_-	bifunctional ATPase/kinase NadR	NA	A0A2K9VDE3	Lactobacillus_phage	43.2	1.8e-39
VFI20721.1|2005911_2006439_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	95.4	2.2e-89
VFI20729.1|2006645_2008691_-|holin	choline-binding surface protein A	holin	NA	NA	NA	NA
VFI20737.1|2008766_2009294_-	membrane protein	NA	NA	NA	NA	NA
VFI20746.1|2009376_2010708_-	signal transduction histidine kinase	NA	NA	NA	NA	NA
VFI20754.1|2010704_2011358_-	DNA-binding response regulator	NA	NA	NA	NA	NA
VFI20762.1|2011999_2014432_-|protease	ATP-dependent Clp protease, ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	40.6	3.8e-128
>prophage 17
LR216050	Streptococcus pneumoniae isolate GPS_US_PATH396-sc-2296505 genome assembly, chromosome: 1	2074861	2037051	2045805	2074861	protease	Bacillus_phage(33.33%)	9	NA	NA
VFI20948.1|2037051_2037891_-	cobalt ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.6	8.8e-16
VFI20956.1|2037875_2038703_-	ABCtransporter ATP-binding protein cobalt transport	NA	W8CYL7	Bacillus_phage	33.3	4.6e-17
VFI20964.1|2038699_2039245_-	phosphatidylglycerophosphate synthase	NA	NA	NA	NA	NA
VFI20972.1|2039255_2040077_-	transcriptional regulation protein	NA	NA	NA	NA	NA
VFI20977.1|2040118_2041402_-|protease	zinc-dependent protease	protease	A0A0G2Y5U8	Acanthamoeba_polyphaga_mimivirus	31.0	5.5e-17
VFI20985.1|2041398_2042649_-|protease	zinc-dependent protease	protease	A0A1X9I714	Streptococcus_phage	42.3	2.7e-93
VFI20993.1|2042807_2043176_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
VFI21001.1|2043178_2044276_+	recombination protein recF	NA	NA	NA	NA	NA
VFI21010.1|2044326_2045805_-	inosine-5-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
