The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_002662	Lactococcus lactis subsp. lactis Il1403, complete sequence	2365589	13280	55047	2365589	tRNA,bacteriocin,terminase,integrase,transposase,protease	Lactococcus_phage(82.76%)	43	34907:34934	49836:49863
WP_010905029.1|13280_15272_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_010905030.1|15273_15909_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.0	3.9e-24
WP_010905031.1|16109_16580_+	AAA family ATPase	NA	A0A097BYE2	Leuconostoc_phage	30.1	4.0e-10
WP_010905032.1|16597_17164_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010905033.1|17164_20650_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_003132169.1|20809_21280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003132170.1|21398_21668_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
WP_010905035.1|21696_22071_+	septum formation initiator family protein	NA	NA	NA	NA	NA
WP_003132172.1|22070_22394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905036.1|22531_23881_+	serine hydrolase	NA	NA	NA	NA	NA
WP_010905037.1|23877_25149_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_010905038.1|25129_25681_+	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	29.7	1.8e-09
WP_003132177.1|25886_27974_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	G8DDJ2	Micromonas_pusilla_virus	49.2	5.4e-107
WP_010905039.1|30921_32859_+	transcription antiterminator	NA	NA	NA	NA	NA
WP_003132182.1|32906_33338_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010905040.1|33475_34633_+	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA	NA
34907:34934	attL	CATACGGCATTCAATCAGTGTTTTTTTG	NA	NA	NA	NA
WP_010905041.1|35515_35839_-	sigma-70 family RNA polymerase sigma factor	NA	Q9AZI1	Lactococcus_phage	100.0	3.8e-52
WP_010905042.1|35863_36274_-	RinA family protein	NA	Q9AZI2	Lactococcus_phage	100.0	8.0e-71
WP_010905043.1|36270_36714_-|terminase	terminase small subunit	terminase	Q9AZI3	Lactococcus_phage	100.0	7.3e-62
WP_010905044.1|36846_37428_-	hypothetical protein	NA	Q9AZI4	Lactococcus_phage	100.0	2.0e-99
WP_010905045.1|37663_39292_-	DNA primase	NA	Q9AZI5	Lactococcus_phage	100.0	0.0e+00
WP_010905046.1|39302_40097_-	bifunctional DNA primase/polymerase	NA	Q9AZI6	Lactococcus_phage	100.0	5.4e-156
WP_010905047.1|40100_40430_-	hypothetical protein	NA	Q9AZI7	Lactococcus_phage	100.0	5.2e-57
WP_010905048.1|40416_40611_-	hypothetical protein	NA	Q9AZI8	Lactococcus_phage	100.0	2.3e-28
WP_010905050.1|40858_41098_-	hypothetical protein	NA	Q9AZJ0	Lactococcus_phage	100.0	1.6e-39
WP_010905051.1|41140_41422_-	hypothetical protein	NA	Q9AZJ1	Lactococcus_phage	100.0	8.5e-48
WP_010905052.1|41418_41670_-	helix-turn-helix transcriptional regulator	NA	Q9AZJ2	Lactococcus_phage	100.0	1.7e-39
WP_010905053.1|41666_42188_-	hypothetical protein	NA	Q9AZJ3	Lactococcus_phage	100.0	1.5e-93
WP_010905054.1|42191_42386_-	DUF1655 domain-containing protein	NA	Q9AZJ4	Lactococcus_phage	100.0	7.9e-29
WP_010905055.1|42461_43202_-	Rha family transcriptional regulator	NA	Q9AZJ5	Lactococcus_phage	100.0	4.1e-134
WP_015966790.1|43230_43428_-	hypothetical protein	NA	Q9AZJ6	Lactococcus_phage	100.0	1.3e-26
WP_003132198.1|43688_44075_+	helix-turn-helix transcriptional regulator	NA	Q9AZJ7	Lactococcus_phage	100.0	7.3e-66
WP_003132200.1|44084_44639_+	hypothetical protein	NA	Q9AZJ8	Lactococcus_phage	100.0	8.1e-111
WP_003132204.1|44749_44980_+	hypothetical protein	NA	Q9AZK0	Lactococcus_phage	100.0	3.7e-17
WP_003132205.1|45052_45247_+	hypothetical protein	NA	Q9AZK1	Lactococcus_phage	100.0	6.0e-29
WP_010905057.1|45398_45641_+	hypothetical protein	NA	Q9AZK2	Lactococcus_phage	100.0	4.6e-34
WP_010905058.1|45776_46001_+	hypothetical protein	NA	Q9AZK3	Lactococcus_phage	100.0	4.5e-36
WP_010905061.1|47701_47866_+|bacteriocin	bacteriocin	bacteriocin	Q9AZK6	Lactococcus_phage	100.0	7.9e-22
WP_010905062.1|47987_48293_+|bacteriocin	bacteriocin immunity protein	bacteriocin	Q9AZK7	Lactococcus_phage	100.0	8.3e-49
WP_010905063.1|48542_49727_+|integrase	site-specific integrase	integrase	Q9AZK8	Lactococcus_phage	100.0	1.9e-226
WP_010905064.1|50179_50629_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
49836:49863	attR	CATACGGCATTCAATCAGTGTTTTTTTG	NA	NA	NA	NA
WP_010905065.1|50705_50948_+	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_120784960.1|53899_55047_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	40.6	1.9e-45
>prophage 2
NC_002662	Lactococcus lactis subsp. lactis Il1403, complete sequence	2365589	67263	111031	2365589	transposase,tRNA,bacteriocin,protease	Bacillus_phage(44.44%)	44	NA	NA
WP_010905081.1|67263_68289_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010905082.1|68790_69228_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010905083.1|69388_70702_+	APC family permease	NA	NA	NA	NA	NA
WP_010905084.1|70761_71112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905085.1|71170_72166_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_010905086.1|72268_73081_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010905087.1|73206_74844_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	25.9	5.3e-49
WP_010905088.1|75971_77252_-	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA	A0A2I2L687	Orpheovirus	26.9	1.4e-09
WP_010905089.1|77478_78312_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010905090.1|78712_79180_+	universal stress protein	NA	NA	NA	NA	NA
WP_010905091.1|79308_79506_+	DUF4649 domain-containing protein	NA	NA	NA	NA	NA
WP_010905092.1|79536_80157_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010905093.1|80207_81377_+	ring-cleaving dioxygenase	NA	NA	NA	NA	NA
WP_003132255.1|81387_81978_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010905094.1|82575_84723_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	26.5	7.2e-38
WP_010905095.1|84737_86159_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_021214955.1|86252_86378_+|bacteriocin	lactococcin family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_010905097.1|87110_87767_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010905098.1|87869_88151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010905099.1|88160_88313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165842628.1|89009_89102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905101.1|89116_89827_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010905102.1|90252_90705_+	transporter	NA	NA	NA	NA	NA
WP_088792927.1|91051_92163_-|transposase	IS3-like element IS981 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	1.2e-49
WP_010905104.1|92199_92805_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_165842620.1|94318_94621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003132256.1|94840_95143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003132257.1|95144_95312_-|bacteriocin	lactococcin family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003132258.1|95878_96028_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010905107.1|96057_96231_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010905108.1|96594_98376_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	29.1	3.8e-61
WP_010905109.1|98428_99214_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA	NA
WP_010905110.1|99268_100528_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	45.4	3.5e-93
WP_010905111.1|100571_101060_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010905112.1|101211_101679_+	DUF3013 family protein	NA	NA	NA	NA	NA
WP_010905113.1|101708_103262_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	28.1	3.0e-46
WP_010905114.1|103392_103677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905115.1|103714_104203_+	YdeI/OmpD-associated family protein	NA	NA	NA	NA	NA
WP_010905116.1|104220_105174_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
WP_010905117.1|105273_106026_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010905118.1|106054_107011_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_010905119.1|107211_109434_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	U5J9N6	Bacillus_phage	28.3	2.9e-13
WP_003132278.1|109449_110385_-	glycosyltransferase family 2 protein	NA	V9QJB1	Oenococcus_phage	49.7	1.3e-76
WP_010905120.1|110575_111031_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
>prophage 3
NC_002662	Lactococcus lactis subsp. lactis Il1403, complete sequence	2365589	135965	174031	2365589	transposase,tRNA,protease	Shigella_phage(40.0%)	34	NA	NA
WP_010905144.1|135965_136511_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010905145.1|136563_137244_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_095559415.1|137412_138559_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
WP_165842621.1|138616_139988_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	42.3	2.3e-53
WP_095559415.1|140044_141192_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
WP_003131820.1|141496_141763_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_021214669.1|141762_142194_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_003131822.1|142346_142670_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_003131824.1|142700_143252_-	DUF1211 domain-containing protein	NA	NA	NA	NA	NA
WP_010905150.1|143346_144132_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010905151.1|144151_144397_-	DUF2316 family protein	NA	NA	NA	NA	NA
WP_010905152.1|144406_145192_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010905153.1|145303_145849_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010905154.1|148002_148323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010905155.1|148794_154746_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_003129711.1|155374_156523_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	42.9	3.2e-85
WP_010905156.1|156714_157407_+	DUF975 family protein	NA	NA	NA	NA	NA
WP_010905157.1|157467_158649_-	MFS transporter	NA	NA	NA	NA	NA
WP_010905158.1|158829_159267_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_010905159.1|159401_160193_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_010905160.1|160357_160567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905161.1|160578_160818_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905162.1|161013_162597_+	APC family permease	NA	NA	NA	NA	NA
WP_003129721.1|162665_163880_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_003129722.1|164032_164821_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_010905163.1|165329_165635_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_010905164.1|165634_167095_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_010905165.1|167098_167701_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_010905166.1|167740_169174_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_010905167.1|169397_170897_+	amidase	NA	NA	NA	NA	NA
WP_010905168.1|170978_172319_-	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_003129735.1|172500_172698_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	81.5	7.8e-24
WP_010905169.1|172815_173349_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003129738.1|173338_174031_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
>prophage 4
NC_002662	Lactococcus lactis subsp. lactis Il1403, complete sequence	2365589	395393	407524	2365589	tRNA	Streptococcus_phage(40.0%)	14	NA	NA
WP_003131595.1|395393_395711_+	thioredoxin family protein	NA	A0A0K2FIM3	Achromobacter_phage	30.4	4.5e-05
WP_003131594.1|395796_396423_+|tRNA	DUF4479 and tRNA-binding domain-containing protein	tRNA	NA	NA	NA	NA
WP_010905313.1|396585_397926_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010905314.1|398015_398405_+	single-stranded DNA-binding protein	NA	A0A0K0MWE1	Streptococcus_phage	45.0	1.4e-24
WP_003131589.1|398524_398809_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	44.1	3.1e-13
WP_003131585.1|398896_400525_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	56.8	4.9e-156
WP_003131583.1|400570_401383_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	38.1	3.1e-34
WP_010905315.1|401553_402996_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	33.0	1.4e-32
WP_003131580.1|402988_403690_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.7	1.2e-42
WP_003131575.1|403867_404503_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	65.0	5.4e-74
WP_003131573.1|404635_405496_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	45.2	5.0e-67
WP_010905316.1|405547_406330_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_010905317.1|406322_406649_+	DNA replication initiation control protein YabA	NA	NA	NA	NA	NA
WP_010905318.1|406648_407524_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	65.4	8.7e-99
>prophage 5
NC_002662	Lactococcus lactis subsp. lactis Il1403, complete sequence	2365589	444553	520485	2365589	tRNA,holin,head,tail,terminase,portal,integrase,capsid,protease	Lactococcus_phage(90.7%)	106	502595:502623	517745:517773
WP_003131526.1|444553_445000_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_003131525.1|444996_445515_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010905336.1|445618_447004_+	LCP family protein	NA	NA	NA	NA	NA
WP_010905337.1|447235_448369_-|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	100.0	2.8e-214
WP_010905338.1|448491_449070_-	SHOCT domain-containing protein	NA	Q9AZQ9	Lactococcus_phage	100.0	9.8e-99
WP_010905339.1|449153_449990_-	helix-turn-helix domain-containing protein	NA	Q9AZQ8	Lactococcus_phage	100.0	6.0e-158
WP_015966779.1|450218_450389_+	putative transcriptional regulator	NA	Q9AZQ7	Lactococcus_phage	100.0	1.0e-24
WP_010905341.1|450420_450654_+	hypothetical protein	NA	Q9AZQ6	Lactococcus_phage	100.0	5.0e-38
WP_010905342.1|450762_450912_+	hypothetical protein	NA	Q9AZQ5	Lactococcus_phage	100.0	9.1e-17
WP_015966780.1|451171_451414_+	hypothetical protein	NA	Q77JL3	Lactococcus_phage	100.0	5.2e-38
WP_010905344.1|451425_452181_+	phage antirepressor KilAC domain-containing protein	NA	Q9AZQ4	Lactococcus_phage	100.0	1.1e-139
WP_010905345.1|452193_452523_+	DUF771 domain-containing protein	NA	Q9AZQ3	Lactococcus_phage	100.0	8.1e-58
WP_010905346.1|452523_452694_+	hypothetical protein	NA	A0A1P8BME6	Lactococcus_phage	100.0	8.7e-24
WP_180947906.1|452725_452911_+	putative transcriptional regulator	NA	Q77NG6	Lactococcus_phage	95.1	1.0e-25
WP_010905348.1|453009_453816_+	recombinase RecT	NA	Q9AZQ0	Lactococcus_phage	100.0	6.2e-144
WP_010905349.1|453815_454592_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	Q9AZP9	Lactococcus_phage	100.0	2.6e-147
WP_010905350.1|454819_455596_+	phage replisome organiser protein	NA	Q9AZP8	Lactococcus_phage	100.0	2.0e-131
WP_010905351.1|455605_456490_+	ATP-binding protein	NA	Q9AZP7	Lactococcus_phage	100.0	1.6e-164
WP_010905352.1|456486_456651_+	hypothetical protein	NA	Q9AZP6	Lactococcus_phage	100.0	2.5e-23
WP_015966782.1|456640_457051_+	hypothetical protein	NA	Q9AZP5	Lactococcus_phage	100.0	2.2e-76
WP_010905354.1|457158_457323_+	hypothetical protein	NA	Q9AZP4	Lactococcus_phage	100.0	4.9e-24
WP_010905355.1|457297_457660_+	DUF658 family protein	NA	Q9AZP3	Lactococcus_phage	100.0	1.5e-60
WP_153916742.1|457666_457810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010905356.1|457853_458060_+	DUF1125 domain-containing protein	NA	Q9MC26	Lactococcus_phage	100.0	2.6e-30
WP_010905357.1|458052_458325_+	hypothetical protein	NA	Q9AYV0	Lactococcus_phage	100.0	5.3e-47
WP_010905358.1|458321_458876_+	DUF1642 domain-containing protein	NA	Q9AYU5	Lactococcus_phage	100.0	1.6e-103
WP_010905359.1|458872_459292_+	dUTP diphosphatase	NA	Q9AZP1	Lactococcus_phage	100.0	3.0e-73
WP_010905360.1|459291_459582_+	hypothetical protein	NA	Q9AZP0	Lactococcus_phage	100.0	2.5e-47
WP_010905361.1|459578_459743_+	hypothetical protein	NA	Q9AZN9	Lactococcus_phage	100.0	4.9e-24
WP_010905362.1|459791_459935_+	hypothetical protein	NA	Q9AZN8	Lactococcus_phage	100.0	2.1e-18
WP_010905363.1|459931_460114_+	DUF1660 domain-containing protein	NA	Q9AZN7	Lactococcus_phage	100.0	1.8e-30
WP_010905365.1|460295_460481_+	hypothetical protein	NA	Q9AZN6	Lactococcus_phage	100.0	1.6e-26
WP_010905366.1|460533_460743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010905367.1|460955_461249_+	DUF1359 domain-containing protein	NA	Q9AZN4	Lactococcus_phage	100.0	9.7e-47
WP_010905368.1|461359_461605_+	helix-turn-helix transcriptional regulator	NA	Q9AZN3	Lactococcus_phage	100.0	4.5e-37
WP_010905369.1|461649_462039_+	DUF1359 domain-containing protein	NA	Q9AZN2	Lactococcus_phage	100.0	5.8e-63
WP_010905370.1|462040_462439_+	hypothetical protein	NA	Q9AZN1	Lactococcus_phage	100.0	2.4e-64
WP_010905372.1|462764_463187_+	RinA family protein	NA	Q9AZM9	Lactococcus_phage	100.0	8.5e-52
WP_010905373.1|463424_463928_+	HNH endonuclease	NA	Q9AZM8	Lactococcus_phage	100.0	3.1e-93
WP_010905374.1|464044_464497_+|terminase	phage terminase small subunit P27 family	terminase	Q9AZM7	Lactococcus_phage	100.0	1.3e-82
WP_010905375.1|464496_466311_+|terminase	terminase large subunit	terminase	Q9AZM6	Lactococcus_phage	99.8	0.0e+00
WP_010905376.1|466319_466484_+	hypothetical protein	NA	Q9AZM5	Lactococcus_phage	100.0	1.9e-20
WP_010905377.1|466480_467560_+|portal	phage portal protein	portal	Q9AZM4	Lactococcus_phage	100.0	2.4e-199
WP_010905378.1|467559_468147_+|head,protease	HK97 family phage prohead protease	head,protease	Q9AZM3	Lactococcus_phage	100.0	4.4e-107
WP_010905379.1|468136_469450_+|capsid	phage major capsid protein	capsid	Q9AZM2	Lactococcus_phage	100.0	2.0e-200
WP_010905380.1|469460_469766_+	hypothetical protein	NA	Q9AZM1	Lactococcus_phage	100.0	4.4e-50
WP_010905381.1|469752_470088_+|head	phage head closure protein	head	Q9AZM0	Lactococcus_phage	100.0	5.9e-56
WP_010905382.1|470084_470570_+	HK97 gp10 family phage protein	NA	Q9AZL9	Lactococcus_phage	100.0	8.8e-85
WP_010905383.1|470566_470962_+	DUF806 family protein	NA	Q9AZL8	Lactococcus_phage	100.0	1.4e-67
WP_010905384.1|470963_471569_+|tail	phage tail protein	tail	Q9AZL7	Lactococcus_phage	100.0	4.9e-109
WP_010905385.1|471628_471973_+|tail	phage tail assembly chaperone	tail	Q9AZL6	Lactococcus_phage	100.0	1.2e-27
WP_014573136.1|472020_472161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021214765.1|472178_475982_+	tape measure protein	NA	Q9AZL5	Lactococcus_phage	100.0	0.0e+00
WP_010905387.1|475984_477520_+|tail	phage tail family protein	tail	Q9AZL3	Lactococcus_phage	100.0	4.8e-294
WP_010905388.1|477519_481845_+	hypothetical protein	NA	Q9AZL2	Lactococcus_phage	100.0	0.0e+00
WP_010905389.1|481864_482191_+	hypothetical protein	NA	Q9AZL1	Lactococcus_phage	100.0	3.9e-52
WP_010905390.1|482177_482465_+|holin	phage holin	holin	Q9AZL0	Lactococcus_phage	100.0	5.6e-47
WP_010905391.1|482464_483244_+	C40 family peptidase	NA	Q9AZK9	Lactococcus_phage	100.0	2.1e-128
WP_166409921.1|483521_483674_+|holin	bacteriophage holin	holin	A0A059NTA2	Lactococcus_phage	95.9	3.1e-20
WP_003131523.1|484225_484987_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010905393.1|485019_485808_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003131521.1|485847_486348_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_010905395.1|486328_486871_+	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_003131519.1|486871_488008_+	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_003131516.1|488242_489850_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	44.5	1.0e-129
WP_003131512.1|490933_491806_-	DUF1003 domain-containing protein	NA	NA	NA	NA	NA
WP_003131510.1|492153_492336_-	YjzD family protein	NA	NA	NA	NA	NA
WP_010905396.1|492451_492931_-	nucleoside 2-deoxyribosyltransferase	NA	A0A1D3SPR3	Enterococcus_phage	47.4	6.5e-32
WP_010905397.1|492914_493337_-	LOG family protein	NA	A0A1D3SNB7	Enterococcus_phage	41.4	2.2e-15
WP_010905398.1|493468_494122_-	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	45.9	6.6e-51
WP_003131504.1|494601_497784_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.2	1.1e-122
WP_003131502.1|497814_498468_-	hemolysin III family protein	NA	NA	NA	NA	NA
WP_014570388.1|498669_499506_+	DegV family protein	NA	NA	NA	NA	NA
WP_003131499.1|499498_500359_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_010905400.1|500355_501567_+	glycoside hydrolase family 3 protein	NA	NA	NA	NA	NA
WP_010905401.1|501576_502233_+	YpmS family protein	NA	NA	NA	NA	NA
WP_010905402.1|502337_502613_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	67.4	1.6e-22
502595:502623	attL	GAAAGACGCAGTTAAATAATTATAGCTAT	NA	NA	NA	NA
WP_010905403.1|502722_503871_-|integrase	site-specific integrase	integrase	Q9AZF9	Lactococcus_phage	100.0	1.4e-210
WP_010905404.1|503994_504486_-	hypothetical protein	NA	Q9AZF8	Lactococcus_phage	100.0	3.7e-83
WP_003131491.1|504539_504836_-	hypothetical protein	NA	Q9AZF7	Lactococcus_phage	100.0	3.3e-50
WP_003131490.1|504882_505470_-	hypothetical protein	NA	Q9AZF6	Lactococcus_phage	100.0	3.6e-109
WP_003131489.1|505481_505850_-	XRE family transcriptional regulator	NA	Q9AZF5	Lactococcus_phage	100.0	1.8e-66
WP_003131488.1|506143_506335_+	hypothetical protein	NA	Q9AZF4	Lactococcus_phage	100.0	8.6e-28
WP_010905405.1|506350_506611_+	excisionase	NA	Q9AZF3	Lactococcus_phage	100.0	8.6e-47
WP_010905406.1|506769_506964_+	DUF1655 domain-containing protein	NA	Q9AZF2	Lactococcus_phage	100.0	1.0e-28
WP_010905407.1|506968_507394_+	hypothetical protein	NA	Q9AZF1	Lactococcus_phage	100.0	2.6e-77
WP_010905408.1|507428_507668_+	hypothetical protein	NA	Q9AZF0	Lactococcus_phage	100.0	3.6e-39
WP_010905409.1|507664_507919_+	hypothetical protein	NA	Q9AZE9	Lactococcus_phage	100.0	3.7e-42
WP_003131482.1|507915_508110_+	hypothetical protein	NA	Q9AZE8	Lactococcus_phage	100.0	2.3e-28
WP_010905410.1|508096_508423_+	HTH domain-containing protein	NA	Q9AZE7	Lactococcus_phage	100.0	1.1e-54
WP_010905411.1|508430_509009_+	hypothetical protein	NA	Q9AZE6	Lactococcus_phage	100.0	1.2e-91
WP_010905412.1|509001_510444_+	hypothetical protein	NA	Q9AZE5	Lactococcus_phage	100.0	1.6e-278
WP_010905413.1|510595_511180_+	hypothetical protein	NA	Q9AZE4	Lactococcus_phage	100.0	2.9e-106
WP_010905414.1|511356_511542_+	hypothetical protein	NA	Q9AZE3	Lactococcus_phage	100.0	7.0e-27
WP_010905415.1|511568_512177_+	hypothetical protein	NA	Q9AZE2	Lactococcus_phage	100.0	1.2e-102
WP_010905416.1|512185_512776_+|head,protease	HK97 family phage prohead protease	head,protease	Q9AZE1	Lactococcus_phage	100.0	9.0e-108
WP_010905417.1|512991_513321_+	hypothetical protein	NA	Q9AZE0	Lactococcus_phage	100.0	9.3e-54
WP_010905418.1|513421_513742_+	sigma-70 family RNA polymerase sigma factor	NA	Q9AZD9	Lactococcus_phage	100.0	3.8e-52
WP_010905420.1|514454_514676_+	hypothetical protein	NA	Q9AZD7	Lactococcus_phage	100.0	3.0e-32
WP_010905421.1|514844_515333_+	DUF4065 domain-containing protein	NA	Q9AZD6	Lactococcus_phage	100.0	5.0e-88
WP_010905422.1|515298_515865_+	hypothetical protein	NA	Q9AZD5	Lactococcus_phage	100.0	4.6e-101
WP_010905424.1|517113_517314_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	100.0	6.7e-31
WP_003131761.1|517854_518352_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
517745:517773	attR	GAAAGACGCAGTTAAATAATTATAGCTAT	NA	NA	NA	NA
WP_010905425.1|518498_519008_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.1	4.3e-26
WP_003131759.1|519021_519582_+	methylphosphotriester-DNA--protein-cysteine methyltransferase family protein	NA	NA	NA	NA	NA
WP_010905426.1|519675_520485_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	36.7	2.2e-19
>prophage 6
NC_002662	Lactococcus lactis subsp. lactis Il1403, complete sequence	2365589	614998	672973	2365589	tRNA,integrase,protease,transposase	Bacillus_phage(25.0%)	45	634322:634381	651790:651901
WP_003129541.1|614998_615883_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003129542.1|615965_616634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003129543.1|616804_617701_+	SPFH domain-containing protein	NA	A0A1V0SL90	Klosneuvirus	34.8	1.8e-35
WP_003129544.1|618075_618336_+	membrane protein	NA	NA	NA	NA	NA
WP_003129545.1|618693_619617_+	ribonuclease Z	NA	NA	NA	NA	NA
WP_010905467.1|619609_620311_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010905468.1|620477_622706_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.4	1.3e-79
WP_012897343.1|622828_623341_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.0	9.1e-32
WP_003129551.1|623556_624120_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_010905469.1|624256_625909_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_025016857.1|625968_626442_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_101928132.1|626560_627708_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
WP_120784970.1|627781_629154_-|transposase	IS3-like element ISLla3 family transposase	transposase	A0A1B1P773	Bacillus_phage	43.1	3.0e-53
WP_010905471.1|629353_629809_+	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010905472.1|629798_632249_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	34.0	5.7e-124
WP_003129564.1|632383_632941_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010905473.1|633125_634427_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	87.6	4.0e-217
634322:634381	attL	TACAGACCGTATGGCTAAATACAACCAATTGCTTCGTATCGAAGACCAATTGGCTGAAGT	NA	NA	NA	NA
WP_031297127.1|634514_635450_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A142F1N9	Bacillus_phage	27.5	4.0e-25
WP_010905475.1|635722_636490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905476.1|637077_637218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905477.1|637533_637716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905478.1|637737_638907_+	hypothetical protein	NA	V9VGE4	Lactococcus_phage	40.4	1.1e-37
WP_010905479.1|640779_643767_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	26.4	5.5e-20
WP_010905480.1|643806_645354_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	39.1	1.4e-99
WP_010905481.1|645350_646574_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	30.7	1.6e-34
WP_161940567.1|646778_647777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905484.1|647938_648208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021211383.1|648509_648710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905486.1|648975_649746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123174237.1|650156_651268_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.1	4.2e-50
WP_010905491.1|652009_652681_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.0	1.6e-28
651790:651901	attR	TACAGACCGTATGGCTAAATACAACCAATTGCTTCGTATCGAAGACCAATTGGCTGAAGTGGCTCAATACAAAGGTCTTAAAGCATTCTACAACCTTAAAAAATAAGGTTTA	NA	NA	NA	NA
WP_003129569.1|652683_653757_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010905492.1|653768_654338_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010905493.1|654525_656049_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010905494.1|656293_657157_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_003129579.1|657417_659781_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	32.0	9.5e-108
WP_010905495.1|659912_660572_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010905496.1|660574_661792_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_003129585.1|661788_661935_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010905497.1|662275_663538_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_010905498.1|663643_667057_+	pyruvate carboxylase	NA	NA	NA	NA	NA
WP_123174238.1|667180_668506_+	citrate/2-methylcitrate synthase	NA	NA	NA	NA	NA
WP_010905500.1|668502_671049_+	aconitate hydratase AcnA	NA	NA	NA	NA	NA
WP_010905501.1|671069_672308_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003129593.1|672373_672973_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	52.0	2.1e-51
>prophage 7
NC_002662	Lactococcus lactis subsp. lactis Il1403, complete sequence	2365589	999585	1013369	2365589		Enterococcus_phage(25.0%)	11	NA	NA
WP_003130964.1|999585_1000278_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	34.4	2.7e-31
WP_010905664.1|1000270_1001206_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003130966.1|1001307_1002285_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	66.2	2.4e-118
WP_003130967.1|1002634_1004803_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	61.1	3.0e-257
WP_003130968.1|1004938_1005361_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	37.3	2.3e-12
WP_012897612.1|1005362_1005581_-	redoxin NrdH	NA	C3U2K9	Lactococcus_phage	47.6	7.6e-12
WP_010905665.1|1005754_1006396_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010905666.1|1006670_1008605_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	43.2	1.6e-124
WP_003130976.1|1009340_1010174_+	3'-5' exonuclease	NA	A0A0K2SUJ2	Clostridium_phage	39.4	3.1e-21
WP_003130977.1|1010170_1010620_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003130980.1|1010894_1013369_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	32.2	4.2e-98
>prophage 8
NC_002662	Lactococcus lactis subsp. lactis Il1403, complete sequence	2365589	1022027	1075411	2365589	holin,head,tail,terminase,integrase,portal,capsid,protease	Lactococcus_phage(85.07%)	75	1027637:1027653	1072824:1072840
WP_010905672.1|1022027_1023116_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	38.8	8.4e-51
WP_003130990.1|1023115_1023766_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	43.6	1.2e-41
WP_010905673.1|1023774_1024971_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	51.0	1.3e-110
WP_010905674.1|1024998_1025463_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	53.0	5.3e-39
WP_003130994.1|1025565_1026018_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_003130995.1|1026078_1026984_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.2	5.4e-11
WP_003130996.1|1027130_1027574_+	divergent PAP2 family protein	NA	NA	NA	NA	NA
1027637:1027653	attL	GTAAAAAATGAGAAATT	NA	NA	NA	NA
WP_010905675.1|1027713_1029315_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_010905676.1|1029338_1030295_+	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	37.5	3.1e-49
WP_003131888.1|1030420_1031107_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.6	5.5e-32
WP_003131889.1|1031126_1031642_+	DUF2127 domain-containing protein	NA	NA	NA	NA	NA
WP_003131891.1|1031645_1032971_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	27.5	3.4e-22
WP_010905677.1|1032977_1033634_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_010905678.1|1033814_1035632_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1HVL7	Paramecium_bursaria_Chlorella_virus	37.0	3.5e-94
WP_003131898.1|1035762_1036443_+	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_010905679.1|1036641_1037766_-|integrase	site-specific integrase	integrase	Q9B016	Lactococcus_phage	100.0	1.0e-213
WP_010905680.1|1037888_1038434_-	PH domain-containing protein	NA	Q9B015	Lactococcus_phage	100.0	8.9e-94
WP_010905681.1|1038490_1038928_-	ImmA/IrrE family metallo-endopeptidase	NA	Q9B014	Lactococcus_phage	100.0	1.1e-81
WP_010905682.1|1038924_1039467_-	helix-turn-helix domain-containing protein	NA	Q9B013	Lactococcus_phage	100.0	3.1e-91
WP_010905683.1|1039634_1039853_+	DUF739 family protein	NA	O48504	Lactococcus_phage	100.0	2.9e-35
WP_010905684.1|1039889_1040633_+	ORF6C domain-containing protein	NA	Q9B012	Lactococcus_phage	100.0	2.1e-138
WP_003131910.1|1040645_1040981_+	DUF771 domain-containing protein	NA	Q38331	Lactococcus_phage	100.0	1.3e-58
WP_010905685.1|1041118_1041313_+	hypothetical protein	NA	Q77JL6	Lactococcus_phage	100.0	3.0e-28
WP_010905686.1|1041309_1041585_-	hypothetical protein	NA	Q9AYU7	Lactococcus_phage	100.0	1.6e-46
WP_010905687.1|1041687_1041903_+	DUF1408 domain-containing protein	NA	Q38272	Lactococcus_phage	100.0	2.4e-34
WP_010905688.1|1042018_1042537_+	host-nuclease inhibitor Gam family protein	NA	Q9XJE3	Lactococcus_phage	100.0	6.3e-89
WP_010905689.1|1042545_1043169_+	DUF1071 domain-containing protein	NA	Q9B009	Lactococcus_phage	100.0	1.9e-116
WP_010905690.1|1043168_1043621_+	single-stranded DNA-binding protein	NA	Q9B008	Lactococcus_phage	100.0	4.6e-80
WP_015966758.1|1043745_1044528_+	phage replisome organiser protein	NA	A5GYR3	Lactococcus_phage	100.0	3.7e-125
WP_010905692.1|1044527_1045253_+	hypothetical protein	NA	Q9XJE7	Lactococcus_phage	99.6	5.3e-134
WP_002819817.1|1045249_1045639_+	RusA family crossover junction endodeoxyribonuclease	NA	R9QLL1	Lactococcus_phage	100.0	3.2e-69
WP_010905693.1|1045641_1045836_+	hypothetical protein	NA	Q9B005	Lactococcus_phage	100.0	6.7e-28
WP_031297271.1|1045828_1046068_+	DUF1031 family protein	NA	Q9B004	Lactococcus_phage	98.7	1.1e-37
WP_010905695.1|1046179_1046446_+	hypothetical protein	NA	Q9B003	Lactococcus_phage	100.0	6.3e-45
WP_010905696.1|1046467_1046647_+	DUF1497 domain-containing protein	NA	Q9AYU3	Lactococcus_phage	100.0	9.2e-24
WP_010905697.1|1046636_1047206_+	DUF658 family protein	NA	Q9B002	Lactococcus_phage	100.0	2.8e-90
WP_153916742.1|1047212_1047356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010905356.1|1047399_1047606_+	DUF1125 domain-containing protein	NA	Q9MC26	Lactococcus_phage	100.0	2.6e-30
WP_010905357.1|1047598_1047871_+	hypothetical protein	NA	Q9AYV0	Lactococcus_phage	100.0	5.3e-47
WP_010905358.1|1047867_1048422_+	DUF1642 domain-containing protein	NA	Q9AYU5	Lactococcus_phage	100.0	1.6e-103
WP_010905698.1|1048418_1048838_+	dUTP diphosphatase	NA	Q9B001	Lactococcus_phage	100.0	5.1e-73
WP_010905699.1|1048840_1049338_+	hypothetical protein	NA	Q9B000	Lactococcus_phage	100.0	2.2e-91
WP_010905700.1|1049327_1049675_+	hypothetical protein	NA	Q9AZZ9	Lactococcus_phage	100.0	4.5e-59
WP_010905701.1|1049696_1049861_+	hypothetical protein	NA	Q9AZZ8	Lactococcus_phage	100.0	4.9e-24
WP_010905702.1|1049907_1050093_+	hypothetical protein	NA	Q9AZZ7	Lactococcus_phage	100.0	2.4e-27
WP_010905703.1|1050134_1050308_+	DUF1660 domain-containing protein	NA	Q9AZZ6	Lactococcus_phage	100.0	1.9e-29
WP_010905704.1|1050308_1050608_+	hypothetical protein	NA	Q9AZZ5	Lactococcus_phage	100.0	4.8e-49
WP_010905705.1|1050604_1050787_+	hypothetical protein	NA	Q9AZZ4	Lactococcus_phage	100.0	4.3e-29
WP_010905707.1|1051150_1051444_+	DUF1359 domain-containing protein	NA	Q9AZZ2	Lactococcus_phage	100.0	4.4e-47
WP_010905708.1|1051521_1051923_+	RinA family protein	NA	Q9AZZ1	Lactococcus_phage	100.0	5.6e-69
WP_010905709.1|1052033_1052486_+	HNH endonuclease	NA	Q9AZZ0	Lactococcus_phage	100.0	2.7e-88
WP_010905710.1|1052577_1052946_+|terminase	P27 family phage terminase small subunit	terminase	Q9AZY9	Lactococcus_phage	100.0	1.8e-61
WP_010905711.1|1052929_1054708_+|terminase	terminase large subunit	terminase	Q9AZY8	Lactococcus_phage	100.0	0.0e+00
WP_161908439.1|1054802_1055927_+|portal	phage portal protein	portal	Q9AZY7	Lactococcus_phage	100.0	8.8e-213
WP_010905713.1|1055941_1056538_+|head,protease	HK97 family phage prohead protease	head,protease	Q9AZY6	Lactococcus_phage	100.0	5.5e-105
WP_010905714.1|1056509_1057703_+|capsid	phage major capsid protein	capsid	Q9AZY5	Lactococcus_phage	100.0	3.6e-172
WP_010905715.1|1057757_1058615_+	hypothetical protein	NA	Q9AZY4	Lactococcus_phage	100.0	1.1e-167
WP_010905716.1|1058607_1058889_+	hypothetical protein	NA	Q9AZY3	Lactococcus_phage	100.0	6.7e-45
WP_010905717.1|1058875_1059193_+|head	phage head closure protein	head	Q9AZY2	Lactococcus_phage	99.0	4.6e-50
WP_010905718.1|1059182_1059554_+	hypothetical protein	NA	Q9AZY1	Lactococcus_phage	100.0	2.5e-63
WP_010905719.1|1059550_1059868_+	hypothetical protein	NA	Q9AZY0	Lactococcus_phage	100.0	7.5e-53
WP_010905720.1|1059885_1060494_+|tail	phage tail protein	tail	Q9AZX9	Lactococcus_phage	100.0	3.3e-105
WP_010905721.1|1060503_1060863_+	hypothetical protein	NA	Q9AZX8	Lactococcus_phage	100.0	2.7e-62
WP_010905723.1|1061079_1063341_+|tail	phage tail tape measure protein	tail	Q9AZX7	Lactococcus_phage	100.0	0.0e+00
WP_010905724.1|1063341_1064091_+	hypothetical protein	NA	Q9AZX6	Lactococcus_phage	99.6	1.5e-144
WP_010905725.1|1064087_1066772_+	peptidoglycan DD-metalloendopeptidase family protein	NA	Q9AZX5	Lactococcus_phage	100.0	0.0e+00
WP_010905726.1|1066784_1068386_+	DUF2479 domain-containing protein	NA	Q9AZX4	Lactococcus_phage	100.0	0.0e+00
WP_010905727.1|1068378_1069209_+	hypothetical protein	NA	Q9AZX3	Lactococcus_phage	100.0	3.1e-154
WP_010905729.1|1069661_1070000_+	hypothetical protein	NA	Q9AZX1	Lactococcus_phage	100.0	1.3e-55
WP_010905730.1|1070001_1070229_+	hypothetical protein	NA	Q9AZX0	Lactococcus_phage	100.0	1.6e-33
WP_010905731.1|1070254_1070479_+	hemolysin XhlA family protein	NA	Q9AZW9	Lactococcus_phage	100.0	1.0e-32
WP_010905732.1|1070491_1070779_+|holin	phage holin	holin	Q9AZW8	Lactococcus_phage	100.0	9.5e-47
WP_010905733.1|1070778_1071558_+	C40 family peptidase	NA	Q9AZW7	Lactococcus_phage	100.0	5.5e-129
WP_003132739.1|1072933_1073326_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
1072824:1072840	attR	GTAAAAAATGAGAAATT	NA	NA	NA	NA
WP_010905735.1|1073503_1075411_+	ABC-F type ribosomal protection protein	NA	A0A2K9L3Z8	Tupanvirus	28.9	1.6e-49
>prophage 9
NC_002662	Lactococcus lactis subsp. lactis Il1403, complete sequence	2365589	1375966	1460426	2365589	plate,holin,head,tail,lysis,terminase,capsid,portal,integrase,transposase,protease	Lactococcus_phage(89.06%)	94	1415289:1415348	1457044:1457116
WP_010905895.1|1375966_1376593_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	lysis	NA	NA	NA	NA
WP_003131086.1|1376784_1377810_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010905896.1|1377853_1378795_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	51.9	4.8e-79
WP_003131088.1|1378865_1379273_+	NusG domain II-containing protein	NA	NA	NA	NA	NA
WP_003131089.1|1379269_1379800_+	Gx transporter family protein	NA	NA	NA	NA	NA
WP_003131090.1|1379790_1380750_+	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003131091.1|1380746_1381463_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003131093.1|1381945_1382659_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA	NA
WP_010905897.1|1382808_1383744_-	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003131096.1|1383816_1384605_-	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA	NA
WP_010905898.1|1385071_1386436_-	MFS transporter	NA	NA	NA	NA	NA
WP_003132414.1|1386812_1388024_+	SPFH domain-containing protein	NA	NA	NA	NA	NA
WP_003132415.1|1388183_1389323_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003132416.1|1389319_1390105_+	YgcG family protein	NA	NA	NA	NA	NA
WP_031296465.1|1390134_1390671_-	rRNA large subunit pseudouridine synthase E	NA	NA	NA	NA	NA
WP_010905901.1|1392251_1393064_-	WxL domain-containing protein	NA	NA	NA	NA	NA
WP_003132422.1|1393038_1393383_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003132423.1|1393429_1394434_-	DUF916 domain-containing protein	NA	NA	NA	NA	NA
WP_003130410.1|1395696_1396644_+|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	3.4e-32
WP_010905904.1|1397061_1397496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010905905.1|1397508_1398090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010905906.1|1398286_1401481_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_010905907.1|1401792_1402266_-	glutathione peroxidase	NA	NA	NA	NA	NA
WP_010905908.1|1402448_1403078_+	glycoside hydrolase family 73 protein	NA	A0A0K2CP65	Brevibacillus_phage	46.3	1.5e-28
WP_010905909.1|1403119_1405756_-	cation-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	30.8	4.5e-90
WP_023189145.1|1406013_1406736_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA	NA
WP_010905910.1|1406956_1407526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003132438.1|1407666_1408482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003130487.1|1409730_1410489_+	pilus protein	NA	NA	NA	NA	NA
WP_003130485.1|1410554_1410908_-	DUF1304 domain-containing protein	NA	NA	NA	NA	NA
WP_003130484.1|1411004_1411433_-	universal stress protein	NA	NA	NA	NA	NA
WP_003130483.1|1411552_1411714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003130481.1|1411743_1412145_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	48.8	2.4e-27
WP_010905913.1|1414111_1414642_-	hypothetical protein	NA	NA	NA	NA	NA
1415289:1415348	attL	AAAAACCGCTCTATTGAGCGATTTCTAATACTATTGGATTCTATAAAATCCATTCAATGG	NA	NA	NA	NA
WP_010905917.1|1416047_1416827_-	C40 family peptidase	NA	Q9AZR1	Lactococcus_phage	100.0	6.1e-128
WP_010905918.1|1416826_1417126_-|holin	phage holin	holin	Q9AZR2	Lactococcus_phage	100.0	1.3e-46
WP_010905919.1|1417151_1418714_-|plate	BppU family phage baseplate upper protein	plate	Q9AZR3	Lactococcus_phage	100.0	4.0e-256
WP_010905920.1|1418725_1418950_-	hemolysin XhlA family protein	NA	Q9AZR4	Lactococcus_phage	100.0	6.1e-33
WP_010905921.1|1418969_1421402_-	hypothetical protein	NA	Q9AZR5	Lactococcus_phage	100.0	0.0e+00
WP_010905922.1|1421379_1421553_-	hypothetical protein	NA	Q9AZR6	Lactococcus_phage	100.0	8.0e-25
WP_010905923.1|1421552_1422674_-	hypothetical protein	NA	Q9AZR7	Lactococcus_phage	100.0	4.8e-195
WP_010905924.1|1422689_1424477_-|tail	phage tail protein	tail	Q9AZR8	Lactococcus_phage	100.0	0.0e+00
WP_010905925.1|1424476_1426012_-|tail	phage tail family protein	tail	Q9AZR9	Lactococcus_phage	100.0	2.1e-294
WP_010905926.1|1426014_1430937_-|tail	phage tail tape measure protein	tail	Q9AZS0	Lactococcus_phage	100.0	0.0e+00
WP_010905927.1|1431161_1431581_-|tail	phage tail assembly chaperone	tail	Q9AZS1	Lactococcus_phage	100.0	1.9e-67
WP_010905928.1|1431725_1432319_-|tail	phage tail protein	tail	Q9AZS2	Lactococcus_phage	100.0	3.8e-106
WP_010905929.1|1432349_1432745_-	DUF806 family protein	NA	Q9AZS3	Lactococcus_phage	100.0	3.9e-67
WP_010905930.1|1432741_1433248_-	HK97 gp10 family phage protein	NA	Q9AZS4	Lactococcus_phage	100.0	3.6e-89
WP_010905931.1|1433249_1433600_-|head	phage head closure protein	head	Q9AZS5	Lactococcus_phage	100.0	2.5e-57
WP_010905932.1|1433574_1433898_-|head,tail	phage gp6-like head-tail connector protein	head,tail	Q9AZS6	Lactococcus_phage	100.0	6.3e-55
WP_010905933.1|1433913_1435140_-|capsid	phage major capsid protein	capsid	Q9AZS7	Lactococcus_phage	99.8	4.6e-223
WP_010905934.1|1435151_1435859_-|protease	Clp protease ClpP	protease	Q9AZS8	Lactococcus_phage	100.0	1.4e-120
WP_010905935.1|1435901_1437080_-|portal	phage portal protein	portal	Q77P35	Lactococcus_phage	100.0	3.1e-224
WP_010905936.1|1437076_1437286_-	DUF1056 family protein	NA	Q9AZT0	Lactococcus_phage	100.0	3.8e-29
WP_164752717.1|1437254_1439225_-|terminase	terminase large subunit	terminase	Q9AZT1	Lactococcus_phage	100.0	0.0e+00
WP_010905938.1|1439214_1439688_-|terminase	phage terminase small subunit P27 family	terminase	Q9AZT2	Lactococcus_phage	100.0	5.9e-86
WP_010905939.1|1439816_1440332_-	HNH endonuclease	NA	Q9AZT3	Lactococcus_phage	100.0	2.3e-99
WP_015966776.1|1440333_1440555_-	hypothetical protein	NA	Q9AZT4	Lactococcus_phage	100.0	9.9e-36
WP_010905941.1|1440786_1441209_-	RinA family protein	NA	Q9AZT6	Lactococcus_phage	100.0	1.5e-51
WP_010905942.1|1441286_1441646_-	hypothetical protein	NA	Q9AZT7	Lactococcus_phage	100.0	1.3e-56
WP_010905945.1|1442106_1442301_-	DUF1660 domain-containing protein	NA	Q9AZT9	Lactococcus_phage	100.0	5.6e-35
WP_010905946.1|1442297_1442441_-	hypothetical protein	NA	A0A1P8BMD9	Lactococcus_phage	100.0	2.1e-18
WP_010905947.1|1442459_1442795_-	DUF1140 family protein	NA	Q9AZU1	Lactococcus_phage	99.1	5.9e-56
WP_010905948.1|1442816_1443161_-	hypothetical protein	NA	Q9AZU2	Lactococcus_phage	99.1	1.4e-60
WP_010905949.1|1443164_1443584_-	dUTP diphosphatase	NA	Q9AZU3	Lactococcus_phage	100.0	2.3e-73
WP_010905950.1|1443580_1443868_-	hypothetical protein	NA	Q9AZU4	Lactococcus_phage	100.0	2.9e-51
WP_015966771.1|1443864_1444500_-	DUF1642 domain-containing protein	NA	Q9AZU5	Lactococcus_phage	100.0	3.8e-120
WP_010905952.1|1444492_1444852_-	hypothetical protein	NA	Q9AZU6	Lactococcus_phage	100.0	8.2e-64
WP_010905953.1|1444860_1445370_-	hypothetical protein	NA	Q9AZU7	Lactococcus_phage	100.0	1.1e-26
WP_010905954.1|1445384_1445957_-	DUF658 family protein	NA	Q9AZU8	Lactococcus_phage	100.0	8.7e-92
WP_010905696.1|1445946_1446126_-	DUF1497 domain-containing protein	NA	Q9AYU3	Lactococcus_phage	100.0	9.2e-24
WP_010905955.1|1446147_1446438_-	hypothetical protein	NA	Q9AZU9	Lactococcus_phage	100.0	1.2e-49
WP_010905956.1|1446549_1446789_-	DUF1031 family protein	NA	Q9AZV0	Lactococcus_phage	100.0	2.3e-38
WP_010905957.1|1446781_1447276_-	hypothetical protein	NA	Q9AZV1	Lactococcus_phage	100.0	5.2e-93
WP_010905958.1|1447272_1447647_-	DUF1064 domain-containing protein	NA	Q9AZV2	Lactococcus_phage	100.0	9.5e-63
WP_010905959.1|1447627_1447801_-	hypothetical protein	NA	Q9AZV3	Lactococcus_phage	100.0	4.7e-25
WP_010905960.1|1447797_1448682_-	ATP-binding protein	NA	A0A059NT94	Lactococcus_phage	99.3	3.9e-163
WP_010905961.1|1448691_1449531_-	phage replisome organiser protein	NA	Q9AZV5	Lactococcus_phage	100.0	5.7e-132
WP_010905962.1|1449658_1450084_-	single-stranded DNA-binding protein	NA	Q9AZV6	Lactococcus_phage	100.0	7.2e-75
WP_010905963.1|1450076_1450835_-	hypothetical protein	NA	Q9AZV7	Lactococcus_phage	100.0	2.5e-147
WP_010905964.1|1450843_1451239_-	hypothetical protein	NA	Q9AZV8	Lactococcus_phage	100.0	8.5e-70
WP_010905687.1|1451353_1451569_-	DUF1408 domain-containing protein	NA	Q38272	Lactococcus_phage	100.0	2.4e-34
WP_010905686.1|1451671_1451947_+	hypothetical protein	NA	Q9AYU7	Lactococcus_phage	100.0	1.6e-46
WP_010905685.1|1451943_1452138_-	hypothetical protein	NA	Q77JL6	Lactococcus_phage	100.0	3.0e-28
WP_010905965.1|1452280_1452571_-	hypothetical protein	NA	Q9AZW0	Lactococcus_phage	100.0	9.3e-50
WP_010905966.1|1452583_1453294_-	phage antirepressor Ant	NA	Q9AZW1	Lactococcus_phage	99.6	3.8e-129
WP_003131906.1|1453307_1453541_-	helix-turn-helix transcriptional regulator	NA	Q9AZW2	Lactococcus_phage	100.0	2.1e-36
WP_010905968.1|1453712_1454234_+	helix-turn-helix domain-containing protein	NA	Q9AZW3	Lactococcus_phage	99.4	1.3e-86
WP_010905969.1|1454243_1454831_+	hypothetical protein	NA	Q9AZW4	Lactococcus_phage	100.0	6.8e-108
WP_010905970.1|1454895_1455747_+	hypothetical protein	NA	Q9AZW5	Lactococcus_phage	100.0	1.2e-89
WP_010905971.1|1455869_1456949_+|integrase	site-specific integrase	integrase	Q9AZW6	Lactococcus_phage	100.0	2.5e-204
WP_003130477.1|1457653_1457989_-	putative DNA-binding protein	NA	NA	NA	NA	NA
1457044:1457116	attR	AAAAACCGCTCTATTGAGCGATTTCTAATACTATTGGATTCTATAAAATCCATTCAATGGAGGCGAGGGGAGT	NA	NA	NA	NA
WP_003130475.1|1458172_1458883_+	response regulator transcription factor	NA	A0A1V0SGR9	Hokovirus	29.1	3.5e-05
WP_010905972.1|1458872_1460426_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	38.6	2.5e-32
>prophage 10
NC_002662	Lactococcus lactis subsp. lactis Il1403, complete sequence	2365589	1558960	1569261	2365589		Synechococcus_phage(33.33%)	8	NA	NA
WP_003130058.1|1558960_1560517_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	45.6	2.3e-70
WP_003130055.1|1560692_1561235_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.9	1.8e-09
WP_010906016.1|1561371_1562409_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_003130052.1|1562539_1563070_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010906017.1|1563120_1564710_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	22.2	3.0e-09
WP_003130044.1|1564876_1565425_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	31.1	2.8e-18
WP_003130042.1|1565452_1566475_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3FGG1	Synechococcus_phage	40.4	6.4e-61
WP_003130040.1|1566657_1569261_-	ATP-dependent chaperone ClpB	NA	K4FB40	Cronobacter_phage	32.8	9.4e-125
>prophage 11
NC_002662	Lactococcus lactis subsp. lactis Il1403, complete sequence	2365589	1771128	1780987	2365589	tRNA	Prochlorococcus_phage(33.33%)	9	NA	NA
WP_010906105.1|1771128_1771890_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.5	1.1e-17
WP_003130885.1|1772055_1772865_-	phosphate ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.5	7.0e-10
WP_003130884.1|1772898_1773792_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_003130883.1|1773791_1774715_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003130881.1|1774835_1775687_-	phosphate ABC transporter substrate-binding protein PstS family protein	NA	E3SNT9	Prochlorococcus_phage	27.3	4.2e-05
WP_003130880.1|1776033_1776930_-	phosphate ABC transporter substrate-binding protein	NA	E3SM63	Prochlorococcus_phage	32.4	7.2e-08
WP_003130878.1|1777207_1777675_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	56.6	2.7e-43
WP_031296345.1|1777706_1778264_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_003130876.1|1778368_1780987_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	33.7	7.1e-64
>prophage 12
NC_002662	Lactococcus lactis subsp. lactis Il1403, complete sequence	2365589	2011425	2028705	2365589	integrase,transposase	Lactococcus_phage(85.71%)	24	2011247:2011267	2025736:2025756
2011247:2011267	attL	ATATAATAGAATAGACAGTTT	NA	NA	NA	NA
WP_003130410.1|2011425_2012373_+|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	3.4e-32
WP_010906204.1|2013684_2014605_-	DUF4065 domain-containing protein	NA	Q9AZG0	Lactococcus_phage	99.7	1.6e-172
WP_010906205.1|2014616_2014913_-	hypothetical protein	NA	Q9AZG1	Lactococcus_phage	100.0	1.6e-49
WP_023349381.1|2015101_2015323_-	hypothetical protein	NA	Q9AZD7	Lactococcus_phage	97.3	2.5e-31
WP_010906207.1|2015472_2015703_-	hypothetical protein	NA	Q9AZG3	Lactococcus_phage	100.0	1.5e-39
WP_010906208.1|2015845_2016352_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	100.0	4.2e-90
WP_015966752.1|2016510_2016681_-	hypothetical protein	NA	Q9AZG5	Lactococcus_phage	100.0	8.2e-06
WP_003130410.1|2016950_2017898_+|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	3.4e-32
WP_010906210.1|2017985_2018348_-	hypothetical protein	NA	Q9AZG6	Lactococcus_phage	100.0	3.4e-57
WP_010906211.1|2018364_2018937_-	hypothetical protein	NA	Q9AZG7	Lactococcus_phage	100.0	2.1e-98
WP_010906212.1|2019098_2019305_-	hypothetical protein	NA	Q9AZG9	Lactococcus_phage	100.0	1.6e-32
WP_010906213.1|2019323_2019506_-	hypothetical protein	NA	Q9AZH0	Lactococcus_phage	100.0	1.4e-27
WP_010906214.1|2019874_2020189_-	hypothetical protein	NA	Q9AZH1	Lactococcus_phage	100.0	3.4e-53
WP_010906215.1|2020101_2021571_-	hypothetical protein	NA	Q9AZH2	Lactococcus_phage	100.0	3.2e-279
WP_010906216.1|2021581_2021851_-	hypothetical protein	NA	Q9AZH3	Lactococcus_phage	100.0	1.3e-40
WP_010906217.1|2021847_2022000_-	hypothetical protein	NA	Q9AZH4	Lactococcus_phage	100.0	1.4e-20
WP_010906219.1|2022253_2022424_-	DUF1655 domain-containing protein	NA	Q9AZH6	Lactococcus_phage	100.0	4.6e-25
WP_010906221.1|2022662_2023178_-	Rha family transcriptional regulator	NA	Q9AZH8	Lactococcus_phage	100.0	4.2e-93
WP_010906222.1|2023292_2023499_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010906223.1|2023647_2024355_+	helix-turn-helix transcriptional regulator	NA	Q9AZH9	Lactococcus_phage	100.0	1.8e-123
WP_010906224.1|2024435_2025635_+|integrase	site-specific integrase	integrase	Q9AZI0	Lactococcus_phage	100.0	1.4e-224
WP_004254847.1|2025838_2026378_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
2025736:2025756	attR	ATATAATAGAATAGACAGTTT	NA	NA	NA	NA
WP_010906225.1|2026544_2028023_+	chitinase	NA	NA	NA	NA	NA
WP_010906226.1|2028042_2028705_+	lytic polysaccharide monooxygenase	NA	A0A0K1Y848	Apis_mellifera_filamentous_virus	31.2	1.2e-15
>prophage 13
NC_002662	Lactococcus lactis subsp. lactis Il1403, complete sequence	2365589	2083062	2148220	2365589	tRNA,bacteriocin,protease,transposase	unidentified_phage(20.0%)	59	NA	NA
WP_010906258.1|2083062_2084010_+|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	8.9e-33
WP_010906259.1|2084030_2084240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010906260.1|2084275_2084794_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_010906261.1|2084968_2085826_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010906262.1|2085871_2086330_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_004254618.1|2086422_2086980_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_004254608.1|2087191_2087908_-	UMP kinase	NA	NA	NA	NA	NA
WP_010906263.1|2087992_2088445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010906264.1|2088578_2089766_-	acetate kinase	NA	NA	NA	NA	NA
WP_004254593.1|2089922_2091110_-	acetate kinase	NA	NA	NA	NA	NA
WP_004254589.1|2091304_2092243_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_004254583.1|2092330_2092582_-	DUF3165 family protein	NA	NA	NA	NA	NA
WP_165842632.1|2092678_2094511_-	translational GTPase TypA	NA	A0A1S5SF82	Streptococcus_phage	36.1	9.2e-18
WP_010906266.1|2094698_2095157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004254570.1|2095172_2095946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010906267.1|2096282_2096909_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	3.7e-19
WP_010906268.1|2096909_2098892_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_010906269.1|2098895_2099222_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_004254546.1|2099521_2100250_-	LytTR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010906270.1|2100442_2100664_+	YqgQ family protein	NA	NA	NA	NA	NA
WP_004254542.1|2100697_2101669_+	ROK family glucokinase	NA	NA	NA	NA	NA
WP_010906271.1|2101671_2102058_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_004254538.1|2102140_2102587_-	DNA starvation/stationary phase protection protein	NA	A0A2K9VCK5	Lactobacillus_phage	34.2	6.5e-18
WP_088792927.1|2102724_2103836_-|transposase	IS3-like element IS981 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	1.2e-49
WP_004254535.1|2103980_2104646_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_010906272.1|2104596_2105688_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010906273.1|2105766_2106258_-|tRNA	prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
WP_010906274.1|2106336_2107830_-	amino acid permease	NA	NA	NA	NA	NA
WP_010906275.1|2108021_2109152_-	aminotransferase	NA	NA	NA	NA	NA
WP_010906276.1|2109415_2110360_-	carbamate kinase	NA	NA	NA	NA	NA
WP_010906277.1|2110391_2111336_-	carbamate kinase	NA	NA	NA	NA	NA
WP_153936531.1|2111352_2111490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010906278.1|2111455_2112928_-	amino acid permease	NA	NA	NA	NA	NA
WP_004254507.1|2113058_2114123_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_004254504.1|2114306_2115539_-	arginine deiminase	NA	NA	NA	NA	NA
WP_010906279.1|2115840_2117535_-|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	34.8	2.1e-80
WP_004254487.1|2117602_2118061_+	arginine repressor	NA	NA	NA	NA	NA
WP_010906280.1|2118243_2119575_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_010906281.1|2119777_2120371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010906282.1|2120586_2123691_-	SNF2 helicase associated domain-containing protein	NA	A0A2L1IWL4	Gordonia_phage	30.1	5.3e-42
WP_010906283.1|2123944_2128297_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010906284.1|2128719_2130423_-	pyruvate oxidase	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	27.2	1.9e-33
WP_004254459.1|2130619_2131606_-	serine hydrolase	NA	NA	NA	NA	NA
WP_010906285.1|2131678_2132458_-	VOC family protein	NA	NA	NA	NA	NA
WP_004254455.1|2132811_2133597_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010906286.1|2133639_2134509_-	aquaporin family protein	NA	NA	NA	NA	NA
WP_004254450.1|2134680_2136972_+	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA	NA
WP_004254447.1|2136973_2137684_+	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	H9D1C6	Salinivibrio_phage	31.8	5.2e-09
WP_010906287.1|2137833_2138676_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010906290.1|2140194_2141646_-|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_031296836.1|2141809_2142304_-	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003129898.1|2142438_2143362_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003129897.1|2143590_2144085_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010906291.1|2144176_2144500_-	DUF1048 domain-containing protein	NA	NA	NA	NA	NA
WP_010906292.1|2144486_2144834_-	DUF1048 domain-containing protein	NA	NA	NA	NA	NA
WP_003129889.1|2144820_2145183_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003129888.1|2145302_2145932_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010906293.1|2145996_2147082_-	PIN/TRAM domain-containing protein	NA	NA	NA	NA	NA
WP_010906258.1|2147272_2148220_-|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	8.9e-33
>prophage 14
NC_002662	Lactococcus lactis subsp. lactis Il1403, complete sequence	2365589	2196128	2268523	2365589	transposase,tRNA,protease	unidentified_phage(18.18%)	50	NA	NA
WP_010906324.1|2196128_2197979_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010906325.1|2198048_2199335_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_003130590.1|2199353_2200157_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010906326.1|2200156_2200891_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	37.0	5.9e-16
WP_003130588.1|2201262_2201595_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_003130585.1|2202405_2202885_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_003130410.1|2202923_2203871_-|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	33.0	3.4e-32
WP_010906329.1|2204340_2205567_+|protease	serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	26.3	4.9e-07
WP_010906330.1|2205692_2206691_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010906331.1|2206816_2208157_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003130579.1|2208264_2208489_+	YkuJ family protein	NA	NA	NA	NA	NA
WP_010906332.1|2208630_2209635_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010906333.1|2209675_2210428_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010906334.1|2210774_2213408_-	DNA polymerase I	NA	A0A068EMS7	Bacillus_phage	31.4	7.7e-50
WP_010906335.1|2213645_2214455_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_095586744.1|2214944_2216092_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
WP_101928107.1|2216164_2217537_-|transposase	IS3-like element ISLla3 family transposase	transposase	A0A1B1P773	Bacillus_phage	43.8	2.4e-55
WP_021214976.1|2223527_2224019_-	protein ComX	NA	NA	NA	NA	NA
WP_003132670.1|2224276_2226007_-	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
WP_010906339.1|2226192_2227221_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_010906340.1|2227342_2228110_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010906341.1|2228468_2229494_+	lactonase family protein	NA	NA	NA	NA	NA
WP_010906342.1|2229726_2232438_+	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010906343.1|2232775_2233273_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003132661.1|2233259_2233469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010906344.1|2233465_2234293_-	radical SAM protein	NA	NA	NA	NA	NA
WP_010906345.1|2234285_2236409_-	radical SAM protein	NA	NA	NA	NA	NA
WP_010906346.1|2236511_2237369_-	transcriptional regulator	NA	A0A1X9I6E0	Streptococcus_phage	28.7	2.3e-11
WP_010906347.1|2237489_2238518_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
WP_010906348.1|2238504_2239002_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	31.4	8.9e-16
WP_015427191.1|2239049_2239589_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003132654.1|2239759_2240980_-	MFS transporter	NA	NA	NA	NA	NA
WP_010906350.1|2241063_2242290_-	multidrug efflux MFS transporter LmrP	NA	NA	NA	NA	NA
WP_010906351.1|2242477_2242972_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_010906352.1|2242995_2244102_+	anti sigma factor C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010906353.1|2244197_2245544_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010906354.1|2245887_2246394_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_010906355.1|2246427_2247273_-	NmrA family NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010906356.1|2247499_2247778_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010906357.1|2247890_2248223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010906358.1|2248266_2250909_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	41.2	2.0e-151
WP_010906359.1|2251164_2251821_-	elongation factor G-binding protein	NA	NA	NA	NA	NA
WP_003132639.1|2252097_2252346_-	DUF1912 family protein	NA	NA	NA	NA	NA
WP_010906360.1|2252384_2252729_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
WP_010906361.1|2252729_2253239_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010906362.1|2253393_2254101_-	B3/4 domain-containing protein	NA	NA	NA	NA	NA
WP_010906363.1|2254432_2255974_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	E4ZFI6	Streptococcus_phage	32.7	1.2e-71
WP_164752716.1|2256202_2256487_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_010906366.1|2259810_2260623_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_010906367.1|2267575_2268523_-|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	32.7	1.7e-31
