The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_003028	Streptococcus pneumoniae TIGR4, complete sequence	2160842	40815	52453	2160842		Synechococcus_phage(33.33%)	8	NA	NA
WP_000668284.1|40815_42969_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.2	3.6e-45
WP_000801611.1|42981_44331_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_000043309.1|44500_45208_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.3e-41
WP_050167432.1|45209_45353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000361188.1|45409_49135_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.8	9.6e-38
WP_000220637.1|49227_50670_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.4	4.4e-55
WP_001284589.1|50888_51911_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	1.2e-64
WP_000717501.1|51907_52453_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	9.7e-24
>prophage 2
NC_003028	Streptococcus pneumoniae TIGR4, complete sequence	2160842	73760	128122	2160842	protease,tRNA,bacteriocin	Streptococcus_phi-m46.1-like_phage(16.67%)	52	NA	NA
WP_000088129.1|73760_79331_+|protease	zinc metalloprotease ZmpC	protease	NA	NA	NA	NA
WP_000220734.1|79686_80541_+	VOC family protein	NA	NA	NA	NA	NA
WP_000200247.1|80646_81204_+	sugar O-acetyltransferase	NA	NA	NA	NA	NA
WP_000615010.1|81420_82185_+	nucleoside phosphorylase	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	68.4	2.9e-58
WP_000897727.1|82797_84177_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_001283896.1|84190_84856_+	TrkA family potassium uptake protein	NA	NA	NA	NA	NA
WP_000771899.1|85165_85705_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000291598.1|85771_86182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000671384.1|86297_88871_+	YSIRK signal domain/LPXTG anchor domain surface protein	NA	NA	NA	NA	NA
WP_000520642.1|89037_89736_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.0	2.0e-37
WP_000769768.1|89732_90785_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_000092756.1|90979_91591_+	30S ribosomal protein S4	NA	NA	NA	NA	NA
WP_000148260.1|92244_92505_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001808767.1|92458_92680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000714582.1|92998_93928_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_001075101.1|93941_94865_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_153231967.1|94938_95079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000800407.1|95122_96598_+	DUF3502 domain-containing protein	NA	NA	NA	NA	NA
WP_001030031.1|96869_97856_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
WP_001140351.1|98130_98991_+	DUF4299 domain-containing protein	NA	NA	NA	NA	NA
WP_000808443.1|99168_100233_-	membrane protein	NA	NA	NA	NA	NA
WP_001233696.1|100295_101207_-	DUF4097 domain-containing protein	NA	NA	NA	NA	NA
WP_000198689.1|101199_101793_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000273863.1|101779_102106_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000744897.1|102244_103411_-	CynX/NimT family MFS transporter	NA	NA	NA	NA	NA
WP_000096186.1|103468_104626_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_001035700.1|104667_106518_+	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	30.5	7.6e-28
WP_001855645.1|106603_106906_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000200892.1|106955_107588_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_000500038.1|107609_108482_-	L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha	NA	NA	NA	NA	NA
WP_000838912.1|108490_109162_-	L-serine ammonia-lyase, iron-sulfur-dependent, subunit beta	NA	NA	NA	NA	NA
WP_000836442.1|109403_109991_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A288TY55	Enterococcus_phage	56.2	1.7e-26
WP_001189287.1|110042_110363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001230165.1|110793_111081_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000724262.1|111132_113241_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000571329.1|113237_113879_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.3	3.3e-23
WP_001038481.1|114085_114892_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_100214364.1|114857_115328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001189280.1|115514_115835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000424421.1|116592_116973_+|bacteriocin	SP_0115 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000770311.1|117630_117870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000058766.1|117888_118134_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	57.6	1.7e-15
WP_001035362.1|118422_120657_+	pneumococcal surface protein A	NA	NA	NA	NA	NA
WP_001282969.1|121057_122179_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000193635.1|122319_122775_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000220964.1|122784_124698_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_001809448.1|124829_124979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000331980.1|125050_126730_-	ribonuclease J	NA	NA	NA	NA	NA
WP_000639589.1|126731_126965_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_000282479.1|127244_127460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000974047.1|127782_127935_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibB	bacteriocin	NA	NA	NA	NA
WP_000180803.1|127936_128122_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibA	bacteriocin	NA	NA	NA	NA
>prophage 3
NC_003028	Streptococcus pneumoniae TIGR4, complete sequence	2160842	301055	357985	2160842	protease,holin,transposase	Streptococcus_phage(41.67%)	47	NA	NA
WP_001808790.1|301055_302402_+|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
WP_000412453.1|302968_303970_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_000838121.1|304079_304415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000711739.1|304425_304668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000712374.1|304678_305221_-	DUF3278 domain-containing protein	NA	NA	NA	NA	NA
WP_001082472.1|305236_305431_-	helix-turn-helix transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	42.6	9.4e-06
WP_000159382.1|305596_306547_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_000818547.1|306558_306876_+	cell division protein FtsL	NA	NA	NA	NA	NA
WP_000872275.1|306879_309132_+	PASTA domain-containing protein	NA	NA	NA	NA	NA
WP_000470785.1|309133_310114_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_061450990.1|310253_310442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001063405.1|310722_312828_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.7	5.8e-117
WP_000032550.1|313123_313606_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_000743611.1|313700_315185_-	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
WP_001156825.1|315337_316945_+	alpha-glucosidase	NA	NA	NA	NA	NA
WP_001808790.1|317354_318701_-|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
WP_078064057.1|318856_318985_+	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
WP_000091082.1|320076_321522_+	LCP family protein	NA	A0A1X9I5X1	Streptococcus_phage	58.6	1.1e-127
WP_000565352.1|321523_322255_+	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_000664160.1|322263_322956_+	capsular polysaccharide biosynthesis protein CpsC	NA	A0A1X9I5E1	Streptococcus_phage	59.0	1.1e-64
WP_001142502.1|322965_323649_+	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	60.0	1.5e-69
WP_000274239.1|324028_324625_+	sugar transferase	NA	NA	NA	NA	NA
WP_000697328.1|324633_325863_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_001264338.1|325867_326944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000598627.1|326936_328055_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_001193768.1|328055_329456_+	O-antigen polysaccharide polymerase Wzy	NA	NA	NA	NA	NA
WP_000902274.1|329470_330538_+	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA	NA
WP_000861791.1|330527_331769_+	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_000758382.1|331773_332871_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A2P1ELS7	Moumouvirus	30.4	7.9e-33
WP_000077424.1|332874_333930_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	33.6	6.9e-34
WP_000594468.1|334029_335259_+	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_000695335.1|335259_336444_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	51.6	7.1e-104
WP_102046170.1|337686_337914_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000152341.1|338404_338728_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_001136123.1|338708_338894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000842584.1|339098_341081_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001032461.1|341382_346686_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_001040013.1|346852_349012_-	penicillin-binding protein 1A	NA	NA	NA	NA	NA
WP_000248787.1|349008_349605_-	Holliday junction resolvase RecU	NA	A0A1L2JY30	Aeribacillus_phage	33.9	8.7e-18
WP_000179547.1|349670_350198_+	DUF1273 domain-containing protein	NA	NA	NA	NA	NA
WP_000146522.1|350267_350597_+	cell division regulator GpsB	NA	NA	NA	NA	NA
WP_000711388.1|351082_352240_+	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_000039291.1|352252_353647_+	mid-cell-anchored protein MapZ	NA	NA	NA	NA	NA
WP_000158781.1|353722_355147_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	29.6	1.6e-41
WP_000518018.1|355158_355848_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000771084.1|355946_356969_+|holin	choline-binding protein CbpC	holin	NA	NA	NA	NA
WP_000698047.1|356986_357985_+|holin	choline-binding protein CbpJ	holin	NA	NA	NA	NA
>prophage 4
NC_003028	Streptococcus pneumoniae TIGR4, complete sequence	2160842	466594	563130	2160842	protease,tRNA,transposase,bacteriocin	Klosneuvirus(11.76%)	90	NA	NA
WP_000181374.1|466594_467098_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_000185828.1|467550_468114_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001850342.1|468103_468754_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000867286.1|468781_469171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000418402.1|469753_470341_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_000105241.1|470730_472338_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	1.5e-141
WP_001808790.1|472993_474340_-|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
WP_000026645.1|474604_476236_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_000795171.1|476528_481508_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_001096747.1|481597_482794_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000119900.1|482929_483457_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000659547.1|483533_483890_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001122904.1|483926_485273_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_001808898.1|485368_485488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410533.1|485452_485602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001067591.1|485745_485883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001220759.1|486053_487334_+	restriction endonuclease subunit S	NA	A0A1V0SKS6	Klosneuvirus	29.2	6.9e-12
WP_000651177.1|487390_488188_+	tyrosine-type DNA invertase PsrA	NA	A0A0H4TI16	Erysipelothrix_phage	28.7	1.3e-21
WP_061365080.1|488198_488798_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000187251.1|488751_490320_-	restriction endonuclease subunit S	NA	A0A1V0SLK8	Klosneuvirus	25.2	8.5e-12
WP_000029045.1|490319_491783_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_000229104.1|491795_494129_-	DEAD/DEAH box helicase family protein	NA	A0A097BY72	Enterococcus_phage	28.6	1.4e-23
WP_000255768.1|495410_496445_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_000046044.1|496471_496996_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_000034665.1|497484_499308_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	1.3e-133
WP_001066295.1|500066_501203_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	31.3	2.4e-24
WP_000777760.1|501892_502180_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001278301.1|502189_502600_-	HIT family protein	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
WP_000889924.1|502667_503399_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	9.0e-25
WP_000653779.1|503395_504445_+	multidrug ABC transporter permease	NA	NA	NA	NA	NA
WP_000132572.1|504612_504942_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000876675.1|505217_505556_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001219120.1|505560_506298_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001017646.1|506311_507652_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000358815.1|507722_507851_-	quorum-sensing system pheromone BlpC	NA	NA	NA	NA	NA
WP_001069075.1|507907_509269_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_078064020.1|509279_509927_-	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	38.4	2.2e-22
WP_001820572.1|509942_510833_-|bacteriocin	bacteriocin ABC transporter	bacteriocin	NA	NA	NA	NA
WP_000205166.1|510849_511437_-	peptidase C39	NA	NA	NA	NA	NA
WP_001093259.1|511718_511916_+|bacteriocin	bacteriocin-like peptide BlpI	bacteriocin	NA	NA	NA	NA
WP_001093248.1|512382_512652_+|bacteriocin	bacteriocin-like peptide BlpJ	bacteriocin	NA	NA	NA	NA
WP_000379967.1|512720_512951_+|bacteriocin	bacteriocin-like peptide BlpU	bacteriocin	NA	NA	NA	NA
WP_000346296.1|512953_513073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000727118.1|513369_513534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000846943.1|513530_513935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_100214365.1|514137_514941_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_000379879.1|515091_515346_+|bacteriocin	two-peptide bacteriocin subunit BlpM	bacteriocin	NA	NA	NA	NA
WP_001099492.1|515361_515565_+|bacteriocin	two-peptide bacteriocin subunit BlpN	bacteriocin	NA	NA	NA	NA
WP_001818346.1|515808_515958_+|bacteriocin	bacteriocin-like peptide BlpO	bacteriocin	NA	NA	NA	NA
WP_000346296.1|516061_516181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000877381.1|516966_517350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000760538.1|517401_518091_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000276498.1|518132_518366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000394045.1|518516_519128_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000363002.1|519288_520083_+	phosphotransferase family protein	NA	NA	NA	NA	NA
WP_001266083.1|520079_520715_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001808691.1|520840_521320_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_000032273.1|521363_522500_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000857562.1|522521_522815_+	YlxR family protein	NA	NA	NA	NA	NA
WP_001041390.1|522807_523107_+	YlxQ-related RNA-binding protein	NA	NA	NA	NA	NA
WP_000039196.1|523123_526000_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	22.9	3.4e-19
WP_001273594.1|526250_526601_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000840385.1|526879_527659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001068159.1|527660_527843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000368737.1|528302_528536_+	DUF1858 domain-containing protein	NA	NA	NA	NA	NA
WP_000129090.1|528535_529870_+	DUF438 domain-containing protein	NA	NA	NA	NA	NA
WP_000119708.1|529879_530134_+	DUF1912 family protein	NA	NA	NA	NA	NA
WP_000038619.1|530229_530625_+	helicase	NA	NA	NA	NA	NA
WP_000580663.1|531037_531487_+	flavin reductase	NA	NA	NA	NA	NA
WP_000124563.1|531473_532034_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000550027.1|532033_532612_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_000032175.1|532604_535256_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	41.1	2.0e-151
WP_000516547.1|535336_535501_+	DNA cytosine methyltransferase	NA	NA	NA	NA	NA
WP_000006328.1|535551_537156_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_001183264.1|537535_538339_+	cell division protein Fic	NA	NA	NA	NA	NA
WP_078064021.1|541184_542864_+	DEAD/DEAH box helicase family protein	NA	I3UKD0	Ostreococcus_lucimarinus_virus	29.0	2.4e-28
WP_000584535.1|543163_544003_+	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_000120584.1|544020_545859_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_000151840.1|545871_547287_+	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	23.9	1.5e-23
WP_001818763.1|547768_548815_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	32.8	1.6e-27
WP_000619950.1|548814_549324_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000961511.1|549400_551806_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_000597970.1|551873_552875_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_001808618.1|553571_553838_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000108201.1|554098_556348_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA	NA
WP_000089968.1|556411_557278_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_001827240.1|557962_560176_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_000539991.1|560191_560809_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_000613661.1|560820_561705_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000591095.1|561786_563130_+|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	35.8	1.2e-46
>prophage 5
NC_003028	Streptococcus pneumoniae TIGR4, complete sequence	2160842	734232	797517	2160842	protease,tRNA,transposase	Bacillus_phage(15.0%)	59	NA	NA
WP_000686921.1|734232_734952_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_001196049.1|734963_735302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001216108.1|735332_735653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000807422.1|735750_735966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000709032.1|736171_736708_-	biotin transporter BioY	NA	NA	NA	NA	NA
WP_001209570.1|736904_738251_-	glutathione-disulfide reductase	NA	NA	NA	NA	NA
WP_000728641.1|738515_739715_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000811482.1|739698_740400_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	43.9	4.0e-38
WP_001180425.1|740401_741661_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_001291370.1|741784_743782_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	31.4	2.3e-83
WP_000665420.1|744247_744568_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000738406.1|744571_745387_+	membrane protein	NA	NA	NA	NA	NA
WP_001269469.1|745461_746388_+	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA	NA
WP_001808490.1|746453_746720_+	DUF2829 domain-containing protein	NA	NA	NA	NA	NA
WP_000167117.1|746712_747411_+	3-oxoacyl-ACP reductase	NA	A0A0K0KVL6	Prochlorococcus_phage	29.2	1.4e-06
WP_000403607.1|747421_747922_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_001245833.1|747899_748769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000612882.1|748743_749184_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_001149111.1|749306_751853_+	M1 family metallopeptidase	NA	A0A0P0IY26	Acinetobacter_phage	27.2	7.4e-74
WP_000590640.1|751961_752636_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.6	3.1e-27
WP_000491790.1|752625_753960_+	HAMP domain-containing histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	34.0	1.2e-06
WP_001145225.1|753993_754281_-	DUF3270 domain-containing protein	NA	NA	NA	NA	NA
WP_000411859.1|754420_755350_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_000848722.1|755549_758000_+	bifunctional DnaQ family exonuclease/ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	47.6	7.6e-201
WP_000830659.1|758036_759260_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_000241392.1|759270_759825_+	DJ-1/PfpI family protein	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	27.2	8.4e-07
WP_001809365.1|759909_760473_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_000134039.1|760487_762434_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	45.3	7.2e-146
WP_000064814.1|762515_764243_+	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
WP_000586646.1|766226_766514_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_162294819.1|767218_767542_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	50.6	7.0e-14
WP_001849728.1|767603_768092_+|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	51.6	3.3e-39
WP_000767193.1|768200_768500_-	DUF1827 family protein	NA	NA	NA	NA	NA
WP_000882523.1|770257_772516_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	40.4	6.0e-128
WP_000443573.1|772744_772975_-	YkuJ family protein	NA	NA	NA	NA	NA
WP_001011637.1|773164_773848_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000140951.1|773847_774582_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.2	6.7e-36
WP_000192090.1|774760_775618_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	41.5	1.8e-40
WP_000601058.1|775755_776577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000429305.1|777728_778412_+	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
WP_000033106.1|778425_779637_+	phosphopentomutase	NA	NA	NA	NA	NA
WP_001808587.1|779638_780181_+	DUF1697 domain-containing protein	NA	NA	NA	NA	NA
WP_000143443.1|780196_781006_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_001275909.1|782486_782999_+	hemolysin	NA	NA	NA	NA	NA
WP_000022084.1|783652_784363_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_000436195.1|784412_785669_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	98.8	4.9e-236
WP_000684223.1|785808_786333_-	DNA topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	40.6	1.2e-26
WP_001274002.1|786385_786622_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_000180487.1|786689_787610_-	type I pantothenate kinase	NA	NA	NA	NA	NA
WP_000289983.1|788418_789000_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001202943.1|788996_790274_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	52.0	6.3e-114
WP_000773677.1|790291_790954_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_000246086.1|790940_791330_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_001036132.1|791419_792472_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000929853.1|792615_794151_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.5	1.4e-19
WP_000038659.1|794143_795202_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000022879.1|795204_796161_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000134474.1|796683_797082_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	48.3	3.0e-22
WP_000892926.1|797175_797517_+|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	50.4	1.6e-24
>prophage 6
NC_003028	Streptococcus pneumoniae TIGR4, complete sequence	2160842	830454	892517	2160842	tRNA,transposase,integrase,bacteriocin,protease	Streptococcus_phage(44.44%)	54	837090:837149	839495:840037
WP_001200084.1|830454_831669_+|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
WP_001076704.1|831803_832628_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001108647.1|833401_834568_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_000627748.1|835074_836568_+	SAM-dependent DNA methyltransferase	NA	A0A2H4UVB0	Bodo_saltans_virus	31.8	3.0e-27
WP_000756158.1|836580_837702_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
837090:837149	attL	CAAATCCCGATTTAACGAGATGTTTGGGGAAAATAAAATATTTGAAAGCATTGATAACTT	NA	NA	NA	NA
WP_000260605.1|837761_837998_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_000158359.1|837994_838408_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_033604818.1|838522_839491_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	29.6	1.8e-33
WP_000466656.1|839513_840095_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
839495:840037	attR	CAAATCCCGATTTAACGAGATGTTTGGGGAAAATAAAATATTTGAAAGCATTGATAACTTATTTGATATTATAGATGGTGATAGGGGCAAAAATTATCCTAAATCAGATGAGTTGTTTAGTGAGGAGTACTGTTTATTTTTAAATACAAAGAATGTTACTAAAAACGGATTTTCATTCGATACAAAGCAATTTATCACTAAAACAAAGGATAAATTACTTCGAAAAGGCAAACTTGAGCGTTATGATATAGTCTTGACAACAAGAGGTACTGTTGGAAATGTAGCGTACTACGATGAATTAATAAAATATAAACATTTACGTATAAATTCAGGTATGGTAATATTACGTCCCAAGACACCAAATCTAAATCAGAAATTTATTATCCATGTTTTAAGGAATAATAATTATAGTCGAGTGATATCAGGAAGTGCTCAGCCTCAGTTACCAATTACAAAATTAAAAAAAATACTTCTCCCCCTCCCCCCACTAGCCCTCCAAAATGAGTTCGCAGACTTTGTAGTCCAGGTCGACAAATCACAATT	NA	NA	NA	NA
WP_000526315.1|840124_843475_+	DEAD/DEAH box helicase family protein	NA	A0A2H4P9W3	Gordonia_phage	24.8	1.4e-11
WP_001042995.1|843980_844451_-	arginine repressor	NA	NA	NA	NA	NA
WP_001212037.1|844467_846741_-	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA	NA
WP_000561538.1|847087_850189_+	DNA polymerase III subunit alpha	NA	A0A291AWR1	Streptomyces_phage	32.8	8.9e-114
WP_000820852.1|850270_851278_+	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_001042809.1|851336_852842_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_000536837.1|853955_854210_-	transcriptional regulator	NA	B3GVX0	Streptococcus_phage	61.2	3.3e-19
WP_000749601.1|854645_855518_+	DUF4300 family protein	NA	NA	NA	NA	NA
WP_000420569.1|856150_856462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000759777.1|856465_857182_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000617836.1|857310_858126_-	TIGR03943 family protein	NA	NA	NA	NA	NA
WP_000123613.1|858122_859028_-	permease	NA	NA	NA	NA	NA
WP_000442116.1|859417_860737_+	DUF1919 domain-containing protein	NA	NA	NA	NA	NA
WP_000359134.1|860838_862968_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_000778585.1|862954_863404_+	SprT family protein	NA	NA	NA	NA	NA
WP_001085044.1|863461_863734_+	PspC domain-containing protein	NA	NA	NA	NA	NA
WP_000680767.1|864087_864279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000173361.1|864706_865465_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.3	7.7e-27
WP_000489362.1|865466_867455_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_162828736.1|867496_868141_-	VIT family protein	NA	NA	NA	NA	NA
WP_001179432.1|868166_869162_-|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	35.7	5.3e-36
WP_000661000.1|869868_871344_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001837031.1|871309_872026_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_000366713.1|872281_873142_+	polyamine aminopropyltransferase	NA	NA	NA	NA	NA
WP_000088777.1|873138_874398_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_000764350.1|874397_875525_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_000969445.1|875521_876607_+	agmatine deiminase	NA	M1HES8	Acanthocystis_turfacea_Chlorella_virus	47.5	1.6e-89
WP_001246755.1|876616_877492_+	N-carbamoylputrescine amidase	NA	M1H5W0	Paramecium_bursaria_Chlorella_virus	50.0	1.1e-77
WP_000593569.1|877672_878482_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000602450.1|878753_878975_+|bacteriocin	SP_0924 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000745365.1|879028_879700_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001842783.1|879751_879949_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001025729.1|879941_880850_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	5.2e-06
WP_000745389.1|880846_881308_+	signal peptidase II	NA	NA	NA	NA	NA
WP_000403193.1|881297_882185_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000728269.1|882187_884071_+	MBL fold metallo-hydrolase	NA	Q332B9	Clostridium_botulinum_C_phage	22.9	1.2e-09
WP_001808492.1|884150_885281_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	1.9e-114
WP_000254682.1|885290_886553_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	65.0	1.3e-140
WP_000689710.1|886556_887354_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.9	1.2e-59
WP_000033362.1|887469_888108_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	68.1	9.8e-76
WP_000806705.1|888104_888995_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.7	4.9e-73
WP_000358228.1|889034_889352_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
WP_001166880.1|889354_890224_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	76.1	2.7e-116
WP_001261452.1|890450_890969_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
WP_100214368.1|891712_892517_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NC_003028	Streptococcus pneumoniae TIGR4, complete sequence	2160842	1206249	1261066	2160842	holin,protease,transposase	Indivirus(18.18%)	56	NA	NA
WP_000811992.1|1206249_1207053_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	27.1	5.3e-10
WP_001199652.1|1207054_1207864_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	30.3	9.1e-10
WP_001126406.1|1208138_1211315_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_000166701.1|1211627_1212707_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.9	6.3e-59
WP_001293838.1|1212756_1213680_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	31.7	5.1e-25
WP_000850024.1|1213698_1214220_-	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_000244451.1|1214430_1215060_-	endonuclease III	NA	NA	NA	NA	NA
WP_000773233.1|1215059_1215602_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000389604.1|1215771_1216089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000558901.1|1216327_1217887_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	27.0	2.1e-10
WP_000895734.1|1217930_1218830_-|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
WP_000219823.1|1218831_1219392_-	LemA family protein	NA	NA	NA	NA	NA
WP_000802934.1|1219485_1220199_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_001813450.1|1220501_1221785_+	uracil transporter	NA	Q9KX94	Enterobacteria_phage	35.3	3.1e-60
WP_000863628.1|1221979_1223551_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_000402066.1|1223562_1223895_-	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_001246404.1|1223985_1224351_-	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
WP_001003478.1|1224434_1225739_+	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	30.2	3.8e-26
WP_000023507.1|1225751_1226558_+	sugar-phosphatase	NA	NA	NA	NA	NA
WP_001009001.1|1226600_1227599_+	SAP domain-containing protein	NA	NA	NA	NA	NA
WP_001068669.1|1227879_1228227_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000237416.1|1228345_1228675_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	37.8	6.3e-10
WP_000712098.1|1228668_1229043_-	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_000362440.1|1229039_1229306_-	chorismate mutase	NA	NA	NA	NA	NA
WP_001162128.1|1229421_1229865_-	flavodoxin	NA	NA	NA	NA	NA
WP_000401779.1|1229968_1230904_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
WP_001808393.1|1230957_1231242_+	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_000028150.1|1231298_1231517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000199560.1|1232601_1233948_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_000711943.1|1234453_1234624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078791811.1|1234636_1235206_-	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	38.5	9.5e-14
WP_001811052.1|1236127_1236286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000841823.1|1236880_1237321_-|transposase	transposase	transposase	A0A218MNE7	uncultured_virus	24.6	1.9e-06
WP_000152337.1|1237774_1238098_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_001136124.1|1238078_1238264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000251935.1|1238536_1239148_-	V-type ATP synthase subunit D	NA	NA	NA	NA	NA
WP_000111248.1|1239170_1240556_-	V-type ATP synthase subunit B	NA	NA	NA	NA	NA
WP_000191781.1|1240556_1242332_-	V-type ATP synthase subunit A	NA	NA	NA	NA	NA
WP_000387941.1|1242394_1242715_-	V-type ATP synthase subunit F	NA	NA	NA	NA	NA
WP_000380544.1|1242704_1243712_-	V-type ATP synthase subunit C	NA	NA	NA	NA	NA
WP_000067168.1|1243776_1244358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000400484.1|1244391_1244868_-	V-type ATP synthase subunit K	NA	NA	NA	NA	NA
WP_001018345.1|1244883_1246875_-	V-type ATP synthase subunit I	NA	NA	NA	NA	NA
WP_000185366.1|1246864_1247188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000691261.1|1247212_1248103_-	ROK family protein	NA	NA	NA	NA	NA
WP_000248710.1|1248259_1249369_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_000739360.1|1249408_1251631_-	sialidase	NA	NA	NA	NA	NA
WP_000587136.1|1251632_1252091_-	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA	NA
WP_000537366.1|1252109_1253651_-	sodium:solute symporter	NA	NA	NA	NA	NA
WP_000654131.1|1253678_1254596_-	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
WP_000078475.1|1254620_1255322_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_000926537.1|1255326_1256136_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000821298.1|1256534_1257122_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000840775.1|1257124_1257358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000566548.1|1257370_1257751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001808790.1|1259719_1261066_-|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
>prophage 8
NC_003028	Streptococcus pneumoniae TIGR4, complete sequence	2160842	1306326	1364511	2160842	protease,tRNA,transposase	Streptococcus_phage(22.22%)	58	NA	NA
WP_000811773.1|1306326_1308945_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	33.8	3.7e-60
WP_000847054.1|1308966_1309452_-	UDP-N-acetylenolpyruvoylglucosamine reductase	NA	NA	NA	NA	NA
WP_000784180.1|1309726_1309966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000725682.1|1310218_1311289_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000712728.1|1311285_1312059_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000753792.1|1312055_1312862_-	ABC transporter permease	NA	Q6GZ02	Mycoplasma_phage	26.5	1.5e-12
WP_000742913.1|1312842_1314000_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	40.4	5.8e-34
WP_000116181.1|1314058_1315009_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_000152221.1|1315120_1315873_-|protease	YhfC family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000360305.1|1315882_1316614_-	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_000744836.1|1316755_1318027_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	47.7	4.5e-104
WP_000837349.1|1318046_1318862_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000946463.1|1319018_1319672_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000128639.1|1319683_1320442_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	6.7e-15
WP_000109217.1|1320454_1321258_-	phosphate ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.7	9.6e-12
WP_001201789.1|1321268_1322153_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_001070908.1|1322142_1323060_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_000746338.1|1323059_1323938_-	phosphate ABC transporter substrate-binding protein PstS	NA	NA	NA	NA	NA
WP_001160265.1|1324511_1325816_-	23S rRNA methyltransferase	NA	NA	NA	NA	NA
WP_000444041.1|1325816_1326590_-	inositol monophosphatase family protein	NA	NA	NA	NA	NA
WP_001041974.1|1326579_1326858_-	UPF0223 family protein	NA	NA	NA	NA	NA
WP_000631259.1|1326857_1327259_-	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA	NA
WP_000850481.1|1327468_1328086_-	TIGR01906 family membrane protein	NA	NA	NA	NA	NA
WP_000875454.1|1328075_1328849_-	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA	NA
WP_000524782.1|1328859_1329597_-	acyl-[acyl-carrier-protein] thioesterase	NA	NA	NA	NA	NA
WP_001170072.1|1329601_1330732_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
WP_000517378.1|1330815_1331205_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000895040.1|1331220_1331604_-	DUF948 domain-containing protein	NA	NA	NA	NA	NA
WP_000886660.1|1331604_1332393_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_000115143.1|1332385_1333321_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_000048055.1|1333450_1333627_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_000864616.1|1333772_1334474_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
WP_001090154.1|1334624_1335653_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_000240824.1|1336313_1336703_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	NA	NA	NA	NA
WP_074192761.1|1336756_1337449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001808790.1|1338002_1339349_+|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
WP_000835656.1|1339907_1340459_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000058033.1|1340808_1341633_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	57.5	1.8e-74
WP_000283118.1|1341629_1343090_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	43.3	1.1e-103
WP_000797175.1|1343205_1343694_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001107505.1|1343683_1343893_-	helix-turn-helix transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	49.1	4.1e-07
WP_001220485.1|1344917_1345652_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	36.7	1.4e-25
WP_001809911.1|1346960_1347272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000169112.1|1347286_1348573_-	U32 family peptidase	NA	Q6DW11	Phage_TP	31.3	2.7e-40
WP_001262530.1|1349196_1349379_+	ApaLI family restriction endonuclease	NA	NA	NA	NA	NA
WP_078064042.1|1349388_1349754_+	ApaLI family restriction endonuclease	NA	NA	NA	NA	NA
WP_000217315.1|1349750_1350941_+	site-specific DNA-methyltransferase	NA	A0A0H3UZ66	Geobacillus_virus	37.4	7.0e-43
WP_000122908.1|1351450_1352443_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000708370.1|1352602_1354357_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.8	2.4e-23
WP_000657820.1|1354340_1356062_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.1	4.9e-29
WP_000368972.1|1356072_1356702_+	MptD family putative ECF transporter S component	NA	NA	NA	NA	NA
WP_029645262.1|1356602_1357160_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_000229345.1|1357147_1358272_+	ABC transporter ATP-binding protein	NA	A0A2K9L407	Tupanvirus	25.0	1.1e-05
WP_001808790.1|1358412_1359759_+|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
WP_001855504.1|1361530_1362277_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000691855.1|1362230_1362425_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001136124.1|1362822_1363008_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000436399.1|1363254_1364511_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	93.3	6.0e-226
>prophage 9
NC_003028	Streptococcus pneumoniae TIGR4, complete sequence	2160842	1372897	1378675	2160842		Streptococcus_phage(50.0%)	9	NA	NA
WP_001272941.1|1372897_1373509_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
WP_000855736.1|1373553_1374282_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000272304.1|1374320_1375232_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.5	1.0e-89
WP_000926600.1|1375297_1375522_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_000590970.1|1375599_1376343_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.7e-29
WP_001103449.1|1376342_1377143_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000889093.1|1377300_1377657_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
WP_001170348.1|1377650_1378181_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	55.6	1.4e-46
WP_000405831.1|1378180_1378675_-	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	51.5	4.2e-42
>prophage 10
NC_003028	Streptococcus pneumoniae TIGR4, complete sequence	2160842	1471172	1477923	2160842	protease	Streptococcus_phage(50.0%)	8	NA	NA
WP_000081011.1|1471172_1472138_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	100.0	2.8e-66
WP_000011310.1|1472171_1473083_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	99.3	9.8e-154
WP_001231105.1|1473079_1474057_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	99.7	4.4e-184
WP_000163033.1|1474053_1474944_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	3.9e-06
WP_001140412.1|1474995_1475376_-	RidA family protein	NA	NA	NA	NA	NA
WP_000422599.1|1475386_1475974_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_000106346.1|1475982_1477215_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	4.2e-131
WP_000162484.1|1477416_1477923_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	42.5	6.7e-27
>prophage 11
NC_003028	Streptococcus pneumoniae TIGR4, complete sequence	2160842	1773387	1780719	2160842		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
WP_000167851.1|1773387_1774089_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	36.5	9.2e-35
WP_000777235.1|1774511_1775471_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	3.1e-57
WP_001193674.1|1775460_1776417_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_000764303.1|1776413_1777166_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	5.6e-14
WP_000858264.1|1777261_1778227_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000821641.1|1778451_1778694_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	1.7e-17
WP_001222228.1|1778693_1779416_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000105310.1|1779402_1779972_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
WP_000351912.1|1779990_1780719_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	6.9e-09
>prophage 12
NC_003028	Streptococcus pneumoniae TIGR4, complete sequence	2160842	2046655	2122806	2160842	holin,tRNA,protease,transposase	Klosneuvirus(12.5%)	60	NA	NA
WP_000753888.1|2046655_2048521_-|holin	choline-binding protein PcpA	holin	NA	NA	NA	NA
WP_001809622.1|2048855_2049038_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_100214372.1|2048982_2049795_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_075575688.1|2049847_2050210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001827508.1|2050210_2050420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000251374.1|2050571_2052452_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_000150718.1|2052445_2053315_-	ROK family protein	NA	NA	NA	NA	NA
WP_000432769.1|2053397_2056043_-	alpha-mannosidase	NA	NA	NA	NA	NA
WP_000263078.1|2056133_2057414_-	glycoside hydrolase family 125 protein	NA	NA	NA	NA	NA
WP_000803459.1|2057585_2059670_+	alpha-1,2-mannosidase	NA	NA	NA	NA	NA
WP_000721480.1|2059709_2061389_-	alpha-L-fucosidase	NA	NA	NA	NA	NA
WP_000094620.1|2062143_2063373_+	arginine deiminase	NA	NA	NA	NA	NA
WP_000185363.1|2063430_2064447_+	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_000013420.1|2064611_2065559_+	carbamate kinase	NA	NA	NA	NA	NA
WP_001290381.1|2065767_2067279_+	YfcC family protein	NA	NA	NA	NA	NA
WP_000686961.1|2067300_2068632_+	Sapep family Mn(2+)-dependent dipeptidase	NA	NA	NA	NA	NA
WP_000657773.1|2069315_2069567_-	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_001808444.1|2069965_2070850_-	SPFH domain-containing protein	NA	A0A1V0SL90	Klosneuvirus	32.5	6.8e-35
WP_000974212.1|2070994_2072146_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_000614266.1|2072291_2074058_-	L-fucose isomerase	NA	NA	NA	NA	NA
WP_001031120.1|2074140_2077257_-	fucolectin	NA	NA	NA	NA	NA
WP_000780618.1|2077266_2079561_-	glycoside hydrolase family 95 protein	NA	NA	NA	NA	NA
WP_000981721.1|2079619_2080420_-	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA	NA
WP_000899623.1|2080416_2081190_-	PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC	NA	NA	NA	NA	NA
WP_000020992.1|2081214_2081685_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_000483178.1|2081675_2082107_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_000912114.1|2082096_2082540_-	fucose isomerase	NA	NA	NA	NA	NA
WP_001286140.1|2082551_2083190_-	L-fuculose-phosphate aldolase	NA	NA	NA	NA	NA
WP_000388524.1|2083304_2084708_-	rhamnulokinase	NA	NA	NA	NA	NA
WP_000588550.1|2084883_2085657_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_000724057.1|2086816_2088322_-	zinc ABC transporter substrate-binding lipoprotein AdcA	NA	NA	NA	NA	NA
WP_000950018.1|2088331_2089138_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_001269474.1|2089130_2089835_-	metal ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.8	2.5e-08
WP_001249319.1|2089834_2090275_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000919868.1|2090429_2091698_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_000351967.1|2091690_2091930_-	D-alanine--poly(phosphoribitol) ligase subunit DltC	NA	NA	NA	NA	NA
WP_000969752.1|2091943_2093188_-	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA	A0A125RNP0	Pseudomonas_phage	28.7	3.2e-22
WP_000066732.1|2093184_2094735_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9KZV5	Tupanvirus	28.2	2.3e-38
WP_000813667.1|2094755_2094887_-	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
WP_001818057.1|2095200_2095473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001808790.1|2095738_2097085_-|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
WP_001808792.1|2100870_2101458_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001127306.1|2101544_2101748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000980835.1|2102044_2102749_-	aquaporin family protein	NA	M1HJ77	Paramecium_bursaria_Chlorella_virus	31.3	2.6e-21
WP_000395957.1|2102818_2104645_-	type 1 glycerol-3-phosphate oxidase	NA	NA	NA	NA	NA
WP_000076776.1|2104686_2106195_-	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_001808699.1|2106353_2107781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000357847.1|2107945_2108818_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_000183297.1|2108804_2109785_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_000458188.1|2110014_2112096_-|holin	pneumococcal surface protein PspC, choline-binding form	holin	NA	NA	NA	NA
WP_000241918.1|2112174_2112702_-	isoprenylcysteine carboxyl methyltransferase family protein	NA	NA	NA	NA	NA
WP_000594671.1|2112784_2114116_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_001024077.1|2114112_2114766_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001109712.1|2115407_2117840_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	40.6	5.0e-128
WP_001211273.1|2117841_2118300_-	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000136224.1|2118418_2119147_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.2	1.0e-28
WP_000754546.1|2119146_2120154_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001813866.1|2120192_2120951_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000647692.1|2120913_2121204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000698569.1|2121459_2122806_-|holin	choline binding-anchored murein hydrolase CbpD	holin	NA	NA	NA	NA
>prophage 13
NC_003028	Streptococcus pneumoniae TIGR4, complete sequence	2160842	2138696	2147450	2160842		Streptococcus_phage(33.33%)	9	NA	NA
WP_000510412.1|2138696_2139536_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	32.6	1.1e-15
WP_000835715.1|2139520_2140348_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	32.9	2.8e-22
WP_000712132.1|2140344_2140890_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001227958.1|2140900_2141722_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000170214.1|2141763_2143047_-	insulinase family protein	NA	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	30.0	8.4e-18
WP_000424267.1|2143043_2144294_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	42.3	4.6e-93
WP_000455867.1|2144452_2144821_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	56.0	2.0e-17
WP_000266660.1|2144823_2145921_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_000073428.1|2145971_2147450_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
