bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	263500	263460	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	263460-263500	CCATCTGATGATATTTTTCCCTGAAGGCTGCCGGGGAGATA	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	311830	311790	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	311790-311830	CCATCTGATGATATTTTTCCCTGAAGGCTGCCGGGGAGATA	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	317155	317195	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	317155-317195	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	325622	325582	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	325582-325622	CCATCTGATGATATTTTTCCCTGAAGGCTGCCGGGGAGATA	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	330452	330412	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	330412-330452	CCATCTGATGATATTTTTCCCTGAAGGCTGCCGGGGAGATA	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	700355	700395	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	700355-700395	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	712998	712958	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	712958-712998	CCATCTGATGATATTTTTCCCTGAAGGCTGCCGGGGAGATA	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	725781	725821	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	725781-725821	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	827014	827054	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	827014-827054	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	1081767	1081807	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	1081767-1081807	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	1390393	1390353	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	1390353-1390393	CCATCTGATGATATTTTTCCCTGAAGGCTGCCGGGGAGATA	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	1402281	1402321	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	1402281-1402321	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	1414941	1414981	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	1414941-1414981	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	1426917	1426957	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	1426917-1426957	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	1467499	1467539	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	1467499-1467539	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	1475913	1475953	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	1475913-1475953	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	1575749	1575789	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	1575749-1575789	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	1592695	1592735	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	1592695-1592735	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	1828378	1828338	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	1828338-1828378	CCATCTGATGATATTTTTCCCTGAAGGCTGCCGGGGAGATA	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	1843681	1843721	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	1843681-1843721	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	1939732	1939772	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	1939732-1939772	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	1964469	1964509	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	1964469-1964509	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	2050261	2050221	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	2050221-2050261	CCATCTGATGATATTTTTCCCTGAAGGCTGCCGGGGAGATA	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	2057289	2057249	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	2057249-2057289	CCATCTGATGATATTTTTCCCTGAAGGCTGCCGGGGAGATA	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	2072012	2072052	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	2072012-2072052	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	2083128	2083088	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	2083088-2083128	CCATCTGATGATATTTTTCCCTGAAGGCTGCCGGGGAGATA	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	2204900	2204940	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	2204900-2204940	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	3058230	3058270	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	3058230-3058270	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	3354627	3354667	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	3354627-3354667	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	3912577	3912617	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	3912577-3912617	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	4463794	4463834	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	4463794-4463834	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	100.00	41	0	0	1	41	4532537	4532497	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-13	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	4532497-4532537	CCATCTGATGATATTTTTCCCTGAAGGCTGCCGGGGAGATA	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	97.56	41	1	0	1	41	1306795	1306835	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-12	63.4	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	1306795-1306835	TATCTCCCCGGCAACCTTCAGGGAAAAATATCATCAGATGG	1
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	97.56	41	1	0	1	41	1582600	1582560	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-12	63.4	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	1582560-1582600	CCATCTGATGATATTTTTCCCTGAAGGTTGCCGGGGAGATA	1
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004337.2	Shigella flexneri 2a str. 301 chromosome, complete genome	97.56	41	1	0	1	41	2695475	2695515	64543-64658|877065-877213|2363954-2364080|2832890-2833036|3246675-3246776	5e-12	63.4	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	2695475-2695515	TATCTCCCCGGCAGCCTTCAGGGAAAAACATCATCAGATGG	1
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004851.1	Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence	100.00	41	0	0	1	41	6155	6115	no crispr array in hit genome!	4e-14	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	6115-6155	CCATCTGATGATATTTTTCCCTGAAGGCTGCCGGGGAGATA	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004851.1	Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence	100.00	41	0	0	1	41	88401	88361	no crispr array in hit genome!	4e-14	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	88361-88401	CCATCTGATGATATTTTTCCCTGAAGGCTGCCGGGGAGATA	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004851.1	Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence	100.00	41	0	0	1	41	98103	98143	no crispr array in hit genome!	4e-14	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	98103-98143	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004851.1	Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence	100.00	41	0	0	1	41	196776	196736	no crispr array in hit genome!	4e-14	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	196736-196776	CCATCTGATGATATTTTTCCCTGAAGGCTGCCGGGGAGATA	0
NC_004337	Shigella flexneri 2a str. 301 chromosome, complete genome	4.1|2832943|41|NC_004337|CRISPRCasFinder	NC_004851.1	Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence	100.00	41	0	0	1	41	206376	206336	no crispr array in hit genome!	4e-14	66.6	1.0	TATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGG	206336-206376	CCATCTGATGATATTTTTCCCTGAAGGCTGCCGGGGAGATA	0
