The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_003098	Streptococcus pneumoniae R6, complete sequence	2038615	41901	53357	2038615		Cyanophage(33.33%)	7	NA	NA
WP_000668290.1|41901_44055_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.0	1.0e-44
WP_000801613.1|44067_45417_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_000043299.1|45586_46294_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D7SE76	Cyanophage	39.7	1.8e-41
WP_000361172.1|46495_50221_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.8	2.1e-37
WP_000220650.1|50313_51756_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.4	2.6e-55
WP_000182582.1|51792_52815_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	1.6e-64
WP_000717506.1|52811_53357_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	7.4e-24
>prophage 2
NC_003098	Streptococcus pneumoniae R6, complete sequence	2038615	105196	137520	2038615	bacteriocin,tRNA	Streptococcus_phage(40.0%)	29	NA	NA
WP_073077611.1|105196_105490_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000723959.1|105544_107653_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000571330.1|107649_108291_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	4.3e-23
WP_001038474.1|108496_109303_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001814401.1|109319_110516_+	argininosuccinate synthase	NA	NA	NA	NA	NA
WP_001107614.1|110544_111936_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_001268172.1|112224_113088_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000093185.1|113907_115773_+	peptidase domain-containing ABC transporter	NA	W8CYL7	Bacillus_phage	25.7	2.5e-39
WP_001096142.1|115765_116233_+	GyrI-like domain-containing protein	NA	NA	NA	NA	NA
WP_000781030.1|116229_117582_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000424424.1|117727_118108_+|bacteriocin	SP_0115 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_001811647.1|118610_118931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000424429.1|119687_120059_+|bacteriocin	SPH_0218 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000909533.1|120066_120279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001812342.1|121083_122142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000792249.1|122455_123433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424414.1|123809_124184_+|bacteriocin	SPH_0224 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000619760.1|124391_125294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424442.1|125349_125703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072891.1|125699_126428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000770317.1|127562_127802_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	51.4	1.8e-14
WP_001819759.1|127786_128065_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	50.5	2.5e-20
WP_001035315.1|128355_130215_+	pneumococcal surface protein A	NA	NA	NA	NA	NA
WP_001282986.1|130615_131737_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000193624.1|131877_132333_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000639151.1|132342_134256_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_000331983.1|134635_136315_-	ribonuclease J	NA	S0A5H7	Cellulophaga_phage	29.9	1.5e-06
WP_000639589.1|136316_136550_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_000977347.1|137367_137520_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibB	bacteriocin	NA	NA	NA	NA
>prophage 3
NC_003098	Streptococcus pneumoniae R6, complete sequence	2038615	306051	352277	2038615	protease,transposase,holin	Escherichia_phage(27.27%)	38	NA	NA
WP_001063452.1|306051_308157_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.7	3.4e-117
WP_000032550.1|308452_308935_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_000743599.1|309029_310514_-	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
WP_001156772.1|310666_312274_+	alpha-glucosidase	NA	NA	NA	NA	NA
WP_001022228.1|312432_312606_+	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
WP_001163596.1|314739_315585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000167408.1|315714_316872_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_000091276.1|316868_318278_+	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_000685095.1|318313_319552_+	nucleotide sugar dehydrogenase	NA	M1I6D5	Acanthocystis_turfacea_Chlorella_virus	49.9	3.3e-104
WP_001819836.1|319580_320186_+	UDP-galactopyranose mutase	NA	E4ZFQ1	Streptococcus_phage	62.6	1.7e-69
WP_000676152.1|320263_321133_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	64.6	2.2e-102
WP_000131446.1|321133_321727_+	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	NA	H9NC63	Sphingomonas_phage	33.1	3.9e-10
WP_000141499.1|321739_322789_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.5	1.8e-71
WP_000600899.1|322854_323706_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.4	1.5e-26
WP_000927992.1|323781_324228_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_000248706.1|324230_324680_+|transposase	transposase	transposase	S5VTD3	Leptospira_phage	29.7	1.5e-06
WP_001811052.1|324750_324909_+|transposase	transposase domain-containing protein	transposase	NA	NA	NA	NA
WP_000842604.1|325110_327093_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001032523.1|327392_332696_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_001039991.1|332862_335022_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_000248787.1|335018_335615_-	Holliday junction resolvase RecU	NA	R9TMF8	Paenibacillus_phage	37.2	7.4e-25
WP_000179549.1|335680_336208_+	DUF1273 domain-containing protein	NA	NA	NA	NA	NA
WP_000146522.1|336277_336607_+	cell division regulator GpsB	NA	NA	NA	NA	NA
WP_000711391.1|337092_338250_+	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_000039255.1|338262_339657_+	mid-cell-anchored protein MapZ	NA	NA	NA	NA	NA
WP_000158781.1|339732_341157_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	29.6	1.6e-41
WP_000518011.1|341168_341858_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	26.1	2.2e-12
WP_000771103.1|341955_342972_+|holin	choline-binding protein CbpC	holin	NA	NA	NA	NA
WP_000163321.1|343093_343972_+	mevalonate kinase	NA	NA	NA	NA	NA
WP_000373458.1|343953_344907_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
WP_000562411.1|344893_345901_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
WP_000210629.1|345884_346895_+	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
WP_001224634.1|346972_347671_+	cell wall-active antibiotics response protein	NA	NA	NA	NA	NA
WP_000743667.1|347667_348663_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000698434.1|348676_349309_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_075218746.1|349476_349788_+	DNA alkylation repair protein	NA	NA	NA	NA	NA
WP_001819829.1|350228_350423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771073.1|351392_352277_+|holin	choline-binding protein CbpF	holin	NA	NA	NA	NA
>prophage 4
NC_003098	Streptococcus pneumoniae R6, complete sequence	2038615	828734	840518	2038615	holin	Streptococcus_phage(72.73%)	13	NA	NA
WP_001025704.1|828734_829643_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	3.1e-06
WP_000745389.1|829639_830101_+	signal peptidase II	NA	NA	NA	NA	NA
WP_000403198.1|830090_830978_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	27.5	6.5e-09
WP_000728289.1|830980_832864_+|holin	phosphorylcholine esterase CbpE	holin	I2E8W4	Clostridium_phage	24.3	2.0e-12
WP_010976490.1|832943_834074_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	1.9e-114
WP_000254686.1|834083_835346_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	64.5	2.5e-139
WP_000689711.1|835349_836147_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.6	2.7e-59
WP_000033364.1|836262_836901_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	68.1	1.3e-75
WP_000806712.1|836897_837788_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.7	4.9e-73
WP_000358228.1|837827_838145_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
WP_001166880.1|838147_839017_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	76.1	2.7e-116
WP_001261452.1|839243_839762_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
WP_001819936.1|839870_840518_+	replication initiator protein A	NA	A0A2P0VK56	Streptococcus_phage	33.7	7.0e-13
>prophage 5
NC_003098	Streptococcus pneumoniae R6, complete sequence	2038615	1102915	1113019	2038615		Bacillus_phage(25.0%)	10	NA	NA
WP_000150986.1|1102915_1104787_-	Eco57I restriction-modification methylase domain-containing protein	NA	A0A1V0SF91	Hokovirus	25.1	9.7e-15
WP_001809704.1|1104861_1105116_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5S8E8	Streptococcus_phage	51.2	5.3e-17
WP_000208080.1|1105117_1105360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001289493.1|1105450_1106260_-	MBL fold metallo-hydrolase	NA	A0A0C5AFC1	Paenibacillus_phage	39.0	1.8e-34
WP_000886210.1|1106261_1107611_-	cell wall metabolism sensor histidine kinase VicK	NA	W8CYF6	Bacillus_phage	34.6	1.8e-34
WP_000722076.1|1107603_1108308_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.8	2.8e-39
WP_000886145.1|1108362_1109538_-	A/G-specific adenine glycosylase	NA	G3CB03	Aeropyrum_pernix_spindle-shaped_virus	29.8	8.8e-22
WP_000845292.1|1109866_1111537_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_000699498.1|1111766_1112456_+	phosphopantothenate--cysteine ligase	NA	Q9HH70	Methanothermobacter_phage	31.6	5.0e-17
WP_001284128.1|1112467_1113019_+	phosphopantothenoylcysteine decarboxylase	NA	A0A1V0S7W6	Shearwaterpox_virus	36.1	3.1e-25
>prophage 6
NC_003098	Streptococcus pneumoniae R6, complete sequence	2038615	1300762	1306540	2038615		Streptococcus_phage(50.0%)	9	NA	NA
WP_001272961.1|1300762_1301374_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
WP_000855753.1|1301418_1302147_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000272302.1|1302185_1303097_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.8	4.5e-90
WP_000926599.1|1303162_1303387_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_000590970.1|1303464_1304208_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.7e-29
WP_001103449.1|1304207_1305008_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000889093.1|1305165_1305522_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
WP_001170347.1|1305515_1306046_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	54.3	1.4e-46
WP_000405853.1|1306045_1306540_-	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	51.5	5.5e-42
>prophage 7
NC_003098	Streptococcus pneumoniae R6, complete sequence	2038615	2016272	2025026	2038615		Streptococcus_phage(33.33%)	9	NA	NA
WP_000510406.1|2016272_2017112_-	energy-coupling factor transporter ATPase	NA	A0A2K9L3Z8	Tupanvirus	29.8	1.0e-16
WP_000835715.1|2017096_2017924_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	32.9	2.8e-22
WP_000712132.1|2017920_2018466_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001227958.1|2018476_2019298_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000170194.1|2019339_2020623_-	insulinase family protein	NA	A0A167R9K4	Powai_lake_megavirus	23.6	7.1e-17
WP_000424263.1|2020619_2021870_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	42.3	3.5e-93
WP_000455903.1|2022028_2022397_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
WP_000266662.1|2022399_2023497_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_000073428.1|2023547_2025026_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
