assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000008625.1_ASM862v1	NC_000918	Aquifex aeolicus VF5, complete sequence	1	156460-156768	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD	Orphan	GTTCCTAATGTACCGT-GTGGAGTTGAAACC,GTTCCTAATGTACCGTGTGGAGTTGAAACCT,GTTCCTAATGTACCGTGTGGANNTNAAANCT	31,31,31	0	0	NA	NA	NA:NA:NA	3,4,4	4	Orphan	cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD,Cas14b_CAS-V-F	NA|496aa|up_1|NC_000918.1_153579_155067_-,NA|140aa|down_5|NC_000918.1_161324_161744_-,NA|162aa|down_8|NC_000918.1_163192_163678_+,NA|143aa|down_9|NC_000918.1_163681_164110_+	NA|437aa|up_9|NC_000918.1_144274_145585_+	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|239aa|up_8|NC_000918.1_145594_146311_+	cd03475, Rieske_SoxF_SoxL, SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer	NA|418aa|up_7|NC_000918.1_146291_147545_+	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|511aa|up_6|NC_000918.1_147545_149078_-	PRK00074, guaA, GMP synthase; Reviewed	NA|172aa|up_5|NC_000918.1_149123_149639_+	COG2032, SodC, Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]	NA|185aa|up_4|NC_000918.1_149719_150274_+	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|301aa|up_3|NC_000918.1_150270_151173_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|796aa|up_2|NC_000918.1_151205_153593_+	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|496aa|up_1|NC_000918.1_153579_155067_-	NA	NA|365aa|up_0|NC_000918.1_155053_156148_-	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional	NA|366aa|down_0|NC_000918.1_156793_157891_+	TIGR01161, N5-carboxyaminoimidazole_ribonucleotide_synthase, phosphoribosylaminoimidazole carboxylase, PurK protein	NA|280aa|down_1|NC_000918.1_157856_158696_-	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein	NA|479aa|down_2|NC_000918.1_158695_160132_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|146aa|down_3|NC_000918.1_160144_160582_-	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms]	NA|227aa|down_4|NC_000918.1_160628_161309_-	COG1059, COG1059, Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|140aa|down_5|NC_000918.1_161324_161744_-	NA	NA|162aa|down_6|NC_000918.1_161731_162217_-	COG0669, CoaD, Phosphopantetheine adenylyltransferase [Coenzyme metabolism]	NA|136aa|down_7|NC_000918.1_162751_163159_+	PRK01236, PRK01236, S-adenosylmethionine decarboxylase proenzyme; Provisional	NA|162aa|down_8|NC_000918.1_163192_163678_+	NA	NA|143aa|down_9|NC_000918.1_163681_164110_+	NA
GCF_000008625.1_ASM862v1	NC_000918	Aquifex aeolicus VF5, complete sequence	2	244561-244791	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cas6,cmr5gr11,cmr3gr5,cas10	cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD	Type III-D,Type III-B,Type III-C,Type III-A	GTTCCTAATGTACCGT-GTGGAGTTGAAAC,GTTTCAACTCCACACGGTACATTAGGAAC,GTTTCAACTCCACACGGTACATTAGGAAC	30,29,29	0	0	NA	NA	NA:NA:NA	3,3,3	3	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD,Cas14b_CAS-V-F	NA,NA|314aa|down_7|NC_000918.1_252308_253250_-	NA|89aa|up_9|NC_000918.1_234259_234526_+	COG2747, FlgM, Negative regulator of flagellin synthesis (anti-sigma28 factor) [Transcription / Cell motility and secretion / Intracellular trafficking and secretion]	DinG|643aa|up_8|NC_000918.1_234589_236518_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|357aa|up_7|NC_000918.1_236529_237600_+	pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family	NA|248aa|up_6|NC_000918.1_237558_238302_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|105aa|up_5|NC_000918.1_238346_238661_+	pfam08734, GYD, GYD domain	NA|266aa|up_4|NC_000918.1_238637_239435_-	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins	NA|143aa|up_3|NC_000918.1_239434_239863_-	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism]	NA|126aa|up_2|NC_000918.1_239862_240240_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|571aa|up_1|NC_000918.1_240236_241949_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|778aa|up_0|NC_000918.1_242212_244546_+	TIGR00254, Hypothetical_protein_yaiC	cas2|94aa|down_0|NC_000918.1_245059_245341_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|317aa|down_1|NC_000918.1_245337_246288_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|176aa|down_2|NC_000918.1_246280_246808_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|726aa|down_3|NC_000918.1_246791_248969_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8b2|532aa|down_4|NC_000918.1_248931_250527_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas5|220aa|down_5|NC_000918.1_250517_251177_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas7|358aa|down_6|NC_000918.1_251157_252231_-	COG1857, COG1857, CRISPR system related protein [Defense mechanisms]	NA|314aa|down_7|NC_000918.1_252308_253250_-	NA	csx3|112aa|down_8|NC_000918.1_253251_253587_-	cd09681, Csx3_III-U, CRISPR/Cas system-associated protein Csx3	csm6|454aa|down_9|NC_000918.1_253591_254953_-	TIGR01897, hypothetical_protein, CRISPR-associated protein, MJ1666 family
GCF_000008625.1_ASM862v1	NC_000918	Aquifex aeolicus VF5, complete sequence	3	263132-263291	3	CRISPRCasFinder	no	cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cas6,cmr5gr11,cmr3gr5,cas10	cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD	Type III-D,Type III-B,Type III-C,Type III-A	GTTTCAACTCCACACGGTACATTAGGAAC	29	0	0	NA	NA	NA	2	2	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD,Cas14b_CAS-V-F	NA|67aa|up_4|NC_000918.1_258633_258834_-,NA|302aa|down_0|NC_000918.1_263584_264490_+	csm6|454aa|up_9|NC_000918.1_253591_254953_-	TIGR01897, hypothetical_protein, CRISPR-associated protein, MJ1666 family	cmr6gr7|374aa|up_8|NC_000918.1_254949_256071_-	COG1604, COG1604, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cmr4gr7|300aa|up_7|NC_000918.1_256086_256986_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr1gr7|296aa|up_6|NC_000918.1_257018_257906_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cas6|248aa|up_5|NC_000918.1_257871_258615_-	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|67aa|up_4|NC_000918.1_258633_258834_-	NA	cmr5gr11|134aa|up_3|NC_000918.1_258856_259258_-	COG3337, COG3337, CRISPR system related protein [Defense mechanisms]	cmr4gr7|296aa|up_2|NC_000918.1_259247_260135_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|326aa|up_1|NC_000918.1_260131_261109_-	COG1769, COG1769, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|622aa|up_0|NC_000918.1_261089_262955_-	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	NA|302aa|down_0|NC_000918.1_263584_264490_+	NA	NA|88aa|down_1|NC_000918.1_264486_264750_+	pfam01312, Bac_export_2, FlhB HrpN YscU SpaS Family	NA|80aa|down_2|NC_000918.1_264846_265086_+	cd00291, SirA_YedF_YeeD, SirA, YedF, and YeeD	NA|183aa|down_3|NC_000918.1_265098_265647_+	pfam13686, DrsE_2, DsrE/DsrF/DrsH-like family	NA|142aa|down_4|NC_000918.1_265666_266092_+	COG2044, COG2044, Predicted peroxiredoxins [General function prediction only]	NA|251aa|down_5|NC_000918.1_266218_266971_+	COG1150, HdrC, Heterodisulfide reductase, subunit C [Energy production and conversion]	NA|353aa|down_6|NC_000918.1_268430_269489_+	COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]	NA|273aa|down_7|NC_000918.1_269485_270304_+	COG1110, COG1110, Reverse gyrase [DNA replication, recombination, and repair]	NA|254aa|down_8|NC_000918.1_270318_271080_+	COG1150, HdrC, Heterodisulfide reductase, subunit C [Energy production and conversion]	NA|321aa|down_9|NC_000918.1_271125_272088_+	COG2048, HdrB, Heterodisulfide reductase, subunit B [Energy production and conversion]
GCF_000008625.1_ASM862v1	NC_000918	Aquifex aeolicus VF5, complete sequence	4	279264-279555	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cmr3gr5,cas10	cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD	Type III-D,Type III-A,Type III-C,Type III-B	GTTTCTAATGTACCGT-GTGGAGTTAAAAC,GTTTTAACTCCACACGGTACATTAGAAAC,GTTTTAACTCCACACGGTACATTAGAAAC	30,29,29	0	0	NA	NA	NA:NA:NA	4,4,4	4	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD,Cas14b_CAS-V-F	NA,NA|116aa|down_9|NC_000918.1_288188_288536_-	NA|321aa|up_9|NC_000918.1_271125_272088_+	COG2048, HdrB, Heterodisulfide reductase, subunit B [Energy production and conversion]	NA|136aa|up_8|NC_000918.1_272162_272570_+	COG2044, COG2044, Predicted peroxiredoxins [General function prediction only]	NA|149aa|up_7|NC_000918.1_272597_273044_+	PRK13380, PRK13380, glycine cleavage system protein H; Provisional	NA|342aa|up_6|NC_000918.1_273086_274112_+	COG1856, COG1856, Uncharacterized homolog of biotin synthetase [Function unknown]	NA|381aa|up_5|NC_000918.1_274128_275271_+	COG0743, Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]	NA|288aa|up_4|NC_000918.1_275230_276094_-	COG0392, COG0392, Predicted integral membrane protein [Function unknown]	NA|204aa|up_3|NC_000918.1_276096_276708_-	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|175aa|up_2|NC_000918.1_276723_277248_-	pfam14385, DUF4416, Domain of unknown function (DUF4416)	NA|292aa|up_1|NC_000918.1_277238_278114_-	COG0540, PyrB, Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]	NA|372aa|up_0|NC_000918.1_278110_279226_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|825aa|down_0|NC_000918.1_279845_282320_+	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]	NA|239aa|down_1|NC_000918.1_282322_283039_+	COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]	NA|440aa|down_2|NC_000918.1_283035_284355_+	COG3400, COG3400, Uncharacterized protein conserved in bacteria [Function unknown]	NA|382aa|down_3|NC_000918.1_284344_285490_+	TIGR00932, Na+/H+_antiporter, transporter, monovalent cation:proton antiporter-2 (CPA2) family	NA|350aa|down_4|NC_000918.1_285503_286553_+	PRK14467, PRK14467, 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA|220aa|down_5|NC_000918.1_286549_287209_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|88aa|down_6|NC_000918.1_287195_287459_-	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|134aa|down_7|NC_000918.1_287455_287857_-	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|111aa|down_8|NC_000918.1_287856_288189_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|116aa|down_9|NC_000918.1_288188_288536_-	NA
GCF_000008625.1_ASM862v1	NC_000918	Aquifex aeolicus VF5, complete sequence	5	692063-692224	5	CRISPRCasFinder	no		cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD	Orphan	GTCGCAATCCCTCACTATTAGGGCGTAACC	30	0	0	NA	NA	NA	2	2	Orphan	cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD,Cas14b_CAS-V-F	NA,NA|147aa|down_7|NC_000918.1_702202_702643_+	NA|404aa|up_9|NC_000918.1_681086_682298_-	COG2067, FadL, Long-chain fatty acid transport protein [Lipid metabolism]	NA|168aa|up_8|NC_000918.1_682301_682805_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|166aa|up_7|NC_000918.1_682777_683275_-	PRK00431, PRK00431, ADP-ribose-binding protein	NA|196aa|up_6|NC_000918.1_683287_683875_-	COG1999, COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]	NA|252aa|up_5|NC_000918.1_683880_684636_-	COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion]	NA|396aa|up_4|NC_000918.1_684684_685872_+	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|344aa|up_3|NC_000918.1_685871_686903_+	smart00481, POLIIIAc, DNA polymerase alpha chain like domain	NA|199aa|up_2|NC_000918.1_686940_687537_+	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase)	NA|633aa|up_1|NC_000918.1_687605_689504_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|824aa|up_0|NC_000918.1_689520_691992_-	cd05914, LC_FACL_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	NA|225aa|down_0|NC_000918.1_692495_693170_-	COG1360, MotB, Flagellar motor protein [Cell motility and secretion]	NA|236aa|down_1|NC_000918.1_693180_693888_-	COG1360, MotB, Flagellar motor protein [Cell motility and secretion]	NA|255aa|down_2|NC_000918.1_693891_694656_-	COG1291, MotA, Flagellar motor component [Cell motility and secretion]	NA|105aa|down_3|NC_000918.1_694698_695013_+	COG1324, CutA, Uncharacterized protein involved in tolerance to divalent cations [Inorganic ion transport and metabolism]	NA|979aa|down_4|NC_000918.1_695009_697946_+	TIGR00618, Nuclease_SbcCD_subunit_C, exonuclease SbcC	NA|1162aa|down_5|NC_000918.1_697942_701428_-	TIGR00594, DNA_polymerase_III_subunit_alpha, DNA-directed DNA polymerase III (polc)	NA|247aa|down_6|NC_000918.1_701439_702180_-	cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs	NA|147aa|down_7|NC_000918.1_702202_702643_+	NA	NA|437aa|down_8|NC_000918.1_702654_703965_+	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|410aa|down_9|NC_000918.1_703948_705178_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
GCF_000008625.1_ASM862v1	NC_000918	Aquifex aeolicus VF5, complete sequence	6	988518-988611	6	CRISPRCasFinder	no	csa3	cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD	Type I-A	GTTCCTAATGTACCGTGTGGAGTTGAAAC	29	0	0	NA	NA	NA	1	1	Orphan	cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD,Cas14b_CAS-V-F	NA,NA	NA|103aa|up_9|NC_000918.1_979398_979707_+	COG0713, NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]	NA|645aa|up_8|NC_000918.1_979709_981644_+	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed	NA|502aa|up_7|NC_000918.1_981655_983161_+	COG1008, NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]	NA|489aa|up_6|NC_000918.1_983174_984641_+	TIGR01770, NADH-quinone_oxidoreductase_subunit_N, proton-translocating NADH-quinone oxidoreductase, chain N	NA|124aa|up_5|NC_000918.1_984646_985018_+	COG0838, NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]	NA|254aa|up_4|NC_000918.1_985004_985766_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	csa3|103aa|up_3|NC_000918.1_985791_986100_+	PRK10141, PRK10141, DNA-binding transcriptional repressor ArsR; Provisional	NA|81aa|up_2|NC_000918.1_986096_986339_+	pfam13192, Thioredoxin_3, Thioredoxin domain	NA|320aa|up_1|NC_000918.1_986342_987302_+	pfam03773, ArsP_1, Predicted permease	NA|311aa|up_0|NC_000918.1_987291_988224_-	cd00947, TBP_aldolase_IIB, Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases	NA|322aa|down_0|NC_000918.1_988668_989634_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|291aa|down_1|NC_000918.1_989844_990717_+	TIGR00946, Uncharacterized_transporter_MTH_1382, he Auxin Efflux Carrier (AEC) Family	NA|585aa|down_2|NC_000918.1_990700_992455_-	PRK01109, PRK01109, ATP-dependent DNA ligase; Provisional	NA|167aa|down_3|NC_000918.1_992454_992955_-	PRK00439, leuD, 3-isopropylmalate dehydratase small subunit; Reviewed	NA|173aa|down_4|NC_000918.1_993019_993538_+	pfam02830, V4R, V4R domain	NA|698aa|down_5|NC_000918.1_993506_995600_+	PRK11114, PRK11114, cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB	NA|326aa|down_6|NC_000918.1_995596_996574_+	COG3405, CelA, Endoglucanase Y [Carbohydrate transport and metabolism]	NA|671aa|down_7|NC_000918.1_996503_998516_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|331aa|down_8|NC_000918.1_998503_999496_+	pfam05420, BCSC_C, Cellulose synthase operon protein C C-terminus (BCSC_C)	NA|245aa|down_9|NC_000918.1_999492_1000227_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
GCF_000008625.1_ASM862v1	NC_000918	Aquifex aeolicus VF5, complete sequence	7	1226626-1226861	4,4,7	CRT,PILER-CR,CRISPRCasFinder	no		cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD	Orphan	CGTTTCTAATGTACCGTAGAGGAGTTGAAAC,GTTTCTAATGTACCGTAGAGGAGTTGAAACC,GTTTCTAATGTACCGTAGAGGAGTTGAAAC	31,31,30	0	0	NA	NA	NA:NA:NA	3,2,2	3	Orphan	cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD,Cas14b_CAS-V-F	NA,NA|98aa|down_3|NC_000918.1_1229523_1229817_-,NA|103aa|down_5|NC_000918.1_1231322_1231631_-,NA|78aa|down_6|NC_000918.1_1231708_1231942_-,NA|78aa|down_7|NC_000918.1_1232065_1232299_+,NA|52aa|down_8|NC_000918.1_1232304_1232460_-	NA|102aa|up_9|NC_000918.1_1216817_1217123_-	pfam02635, DrsE, DsrE/DsrF-like family	NA|78aa|up_8|NC_000918.1_1217119_1217353_-	cd00291, SirA_YedF_YeeD, SirA, YedF, and YeeD	NA|776aa|up_7|NC_000918.1_1217399_1219727_+	TIGR00472, Phenylalanine--tRNA_ligase_beta_subunit, phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial	NA|187aa|up_6|NC_000918.1_1219922_1220483_+	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase	NA|559aa|up_5|NC_000918.1_1220469_1222146_+	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|365aa|up_4|NC_000918.1_1222226_1223321_+	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]	NA|401aa|up_3|NC_000918.1_1223291_1224494_-	pfam02353, CMAS, Mycolic acid cyclopropane synthetase	NA|290aa|up_2|NC_000918.1_1224573_1225443_+	cd13944, lytB_ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA|173aa|up_1|NC_000918.1_1225415_1225934_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|144aa|up_0|NC_000918.1_1225913_1226345_-	COG2510, COG2510, Predicted membrane protein [Function unknown]	NA|252aa|down_0|NC_000918.1_1226886_1227642_-	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|426aa|down_1|NC_000918.1_1227659_1228937_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|204aa|down_2|NC_000918.1_1228915_1229527_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|98aa|down_3|NC_000918.1_1229523_1229817_-	NA	NA|470aa|down_4|NC_000918.1_1229798_1231208_-	TIGR01085, UDP-N-acetylmuramyl-tripeptide_synthetase, UDP-N-acetylmuramyl-tripeptide synthetase	NA|103aa|down_5|NC_000918.1_1231322_1231631_-	NA	NA|78aa|down_6|NC_000918.1_1231708_1231942_-	NA	NA|78aa|down_7|NC_000918.1_1232065_1232299_+	NA	NA|52aa|down_8|NC_000918.1_1232304_1232460_-	NA	NA|393aa|down_9|NC_000918.1_1232470_1233649_-	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated
GCF_000008625.1_ASM862v1	NC_000918	Aquifex aeolicus VF5, complete sequence	8	1249189-1249354	8	CRISPRCasFinder	no		cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD	Orphan	GTTTCTAATGTACCGTGTGGAGTTGAAAGTTGAAA	35	0	0	NA	NA	NA	2	2	Orphan	cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD,Cas14b_CAS-V-F	NA|56aa|up_2|NC_000918.1_1246283_1246451_-,NA|237aa|down_6|NC_000918.1_1254810_1255521_-,NA|132aa|down_8|NC_000918.1_1256068_1256464_-	NA|282aa|up_9|NC_000918.1_1238128_1238974_-	COG1659, COG1659, Uncharacterized protein, linocin/CFP29 homolog [Function unknown]	NA|679aa|up_8|NC_000918.1_1239006_1241043_-	COG1198, PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	NA|145aa|up_7|NC_000918.1_1241053_1241488_-	PRK06733, PRK06733, hypothetical protein; Provisional	NA|380aa|up_6|NC_000918.1_1241605_1242745_+	COG1260, INO1, Myo-inositol-1-phosphate synthase [Lipid metabolism]	NA|668aa|up_5|NC_000918.1_1243107_1245111_+	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|95aa|up_4|NC_000918.1_1245233_1245518_+	pfam01649, Ribosomal_S20p, Ribosomal protein S20	NA|258aa|up_3|NC_000918.1_1245527_1246301_+	TIGR00716, Ribonuclease_HIII, ribonuclease HIII	NA|56aa|up_2|NC_000918.1_1246283_1246451_-	NA	NA|464aa|up_1|NC_000918.1_1246567_1247959_-	TIGR00387, Glycolate_oxidase_subunit_glcD	NA|290aa|up_0|NC_000918.1_1248005_1248875_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|243aa|down_0|NC_000918.1_1249357_1250086_+	PRK05928, hemD, uroporphyrinogen-III synthase; Reviewed	NA|283aa|down_1|NC_000918.1_1250093_1250942_+	COG0774, LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane]	NA|247aa|down_2|NC_000918.1_1250898_1251639_-	COG1066, Sms, Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]	NA|99aa|down_3|NC_000918.1_1251716_1252013_+	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|777aa|down_4|NC_000918.1_1252006_1254337_-	COG1391, GlnE, Glutamine synthetase adenylyltransferase [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms]	NA|155aa|down_5|NC_000918.1_1254344_1254809_-	COG1391, GlnE, Glutamine synthetase adenylyltransferase [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms]	NA|237aa|down_6|NC_000918.1_1254810_1255521_-	NA	NA|173aa|down_7|NC_000918.1_1255531_1256050_-	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|132aa|down_8|NC_000918.1_1256068_1256464_-	NA	NA|282aa|down_9|NC_000918.1_1256564_1257410_-	PRK06246, PRK06246, fumarate hydratase; Provisional
GCF_000008625.1_ASM862v1	NC_000918	Aquifex aeolicus VF5, complete sequence	9	1379598-1379894	9,5,5	CRISPRCasFinder,CRT,PILER-CR	no		cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD	Orphan	GTTTCAACTCCACTACGGTACATTAGGAAC,GTTTCAACTCCACTACGGTACATTAGGAAC,GTTCCTAATGTACCGTAGTGGAGTTGAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	4,4,3	4	Orphan	cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD,Cas14b_CAS-V-F	NA|148aa|up_3|NC_000918.1_1377354_1377798_+,NA	NA|346aa|up_9|NC_000918.1_1372612_1373650_+	cd16443, LplA, lipoate-protein ligase	NA|123aa|up_8|NC_000918.1_1373637_1374006_-	COG4570, Rus, Holliday junction resolvase [DNA replication, recombination, and repair]	NA|155aa|up_7|NC_000918.1_1374063_1374528_+	pfam01245, Ribosomal_L19, Ribosomal protein L19	NA|197aa|up_6|NC_000918.1_1374520_1375111_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|258aa|up_5|NC_000918.1_1375107_1375881_-	pfam14582, Metallophos_3, Metallophosphoesterase, calcineurin superfamily	NA|373aa|up_4|NC_000918.1_1376131_1377250_-	COG2516, COG2516, Biotin synthase-related enzyme [General function prediction only]	NA|148aa|up_3|NC_000918.1_1377354_1377798_+	NA	NA|256aa|up_2|NC_000918.1_1377794_1378562_+	COG0351, ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]	NA|259aa|up_1|NC_000918.1_1378548_1379325_-	TIGR01400, Flagellar_biosynthetic_protein_FliR, flagellar biosynthetic protein FliR	NA|90aa|up_0|NC_000918.1_1379312_1379582_-	TIGR01402, Flagellar_biosynthetic_protein_FliQ, flagellar biosynthetic protein FliQ	NA|507aa|down_0|NC_000918.1_1380177_1381698_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|430aa|down_1|NC_000918.1_1381710_1383000_-	TIGR00054, Putative_zinc_metalloprotease_slr1821, RIP metalloprotease RseP	NA|135aa|down_2|NC_000918.1_1382999_1383404_-	pfam01894, UPF0047, Uncharacterized protein family UPF0047	NA|202aa|down_3|NC_000918.1_1383387_1383993_-	COG4353, COG4353, Uncharacterized conserved protein [Function unknown]	NA|575aa|down_4|NC_000918.1_1384010_1385735_+	PRK14975, PRK14975, bifunctional 3'-5' exonuclease/DNA polymerase; Provisional	NA|211aa|down_5|NC_000918.1_1385730_1386363_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|76aa|down_6|NC_000918.1_1386355_1386583_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|395aa|down_7|NC_000918.1_1386623_1387808_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|567aa|down_8|NC_000918.1_1387804_1389505_-	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	NA|266aa|down_9|NC_000918.1_1389497_1390295_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
GCF_000008625.1_ASM862v1	NC_000918	Aquifex aeolicus VF5, complete sequence	10	1418894-1419060	6,10	PILER-CR,CRISPRCasFinder	no		cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD	Orphan	TGCAAGGTTCCTAATGTACCGT-GTGGAGTTGAAAC,GTTCCTAATGTACCGTGTGGAGTTGAAAC	36,29	0	0	NA	NA	NA:NA	2,2	2	Orphan	cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD,Cas14b_CAS-V-F	NA|105aa|up_7|NC_000918.1_1409140_1409455_-,NA	NA|442aa|up_9|NC_000918.1_1407447_1408773_+	COG1345, FliD, Flagellar capping protein [Cell motility and secretion]	NA|125aa|up_8|NC_000918.1_1408769_1409144_+	COG1516, FliS, Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]	NA|105aa|up_7|NC_000918.1_1409140_1409455_-	NA	NA|170aa|up_6|NC_000918.1_1410475_1410985_+	COG1416, COG1416, Uncharacterized conserved protein [Function unknown]	NA|275aa|up_5|NC_000918.1_1410985_1411810_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|326aa|up_4|NC_000918.1_1411901_1412879_-	cd00498, Hsp33, Heat shock protein 33 (Hsp33):  Cytosolic protein that acts as a molecular chaperone under oxidative conditions	NA|939aa|up_3|NC_000918.1_1412895_1415712_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|138aa|up_2|NC_000918.1_1415786_1416200_+	COG0432, COG0432, Uncharacterized conserved protein [Function unknown]	NA|351aa|up_1|NC_000918.1_1416210_1417263_+	TIGR00328, Flagellar_biosynthetic_protein_FlhB, flagellar biosynthetic protein FlhB	NA|435aa|up_0|NC_000918.1_1417253_1418558_-	TIGR00562, Protoporphyrinogen_oxidase, protoporphyrinogen oxidase	NA|338aa|down_0|NC_000918.1_1419126_1420140_+	TIGR00975, precursor_PBP-3_PstS-3_Antigen_Ag88	NA|321aa|down_1|NC_000918.1_1420126_1421089_+	TIGR02138, phosphate_transport_system_permease_protein_PstC, phosphate ABC transporter, permease protein PstC	NA|286aa|down_2|NC_000918.1_1421067_1421925_+	TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA	NA|144aa|down_3|NC_000918.1_1421932_1422364_+	COG1416, COG1416, Uncharacterized conserved protein [Function unknown]	NA|99aa|down_4|NC_000918.1_1423817_1424114_+	pfam08734, GYD, GYD domain	NA|491aa|down_5|NC_000918.1_1424164_1425637_+	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain	NA|365aa|down_6|NC_000918.1_1425633_1426728_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|164aa|down_7|NC_000918.1_1426766_1427258_+	COG0490, COG0490, Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]	NA|423aa|down_8|NC_000918.1_1427259_1428528_+	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|804aa|down_9|NC_000918.1_1429089_1431501_+	PRK05306, infB, translation initiation factor IF-2; Validated
GCF_000008625.1_ASM862v1	NC_001880	Aquifex aeolicus VF5 plasmid ece1, complete sequence	1	437-664	1,1	PILER-CR,CRT	no	Cas14b_CAS-V-F	Cas14b_CAS-V-F	Unclear	CTTTCTATCCCATATATGGGAACTAAAAC,CTTTCTATCCCATATATGGGAACTAAAACC	29,30	0	0	NA	NA	NA:NA	3,3	3	Unclear	cas6,DinG,cas2,cas1,cas4,cas3,cas8b2,cas5,cas7,csx3,csm6,cmr6gr7,cmr4gr7,cmr1gr7,cmr5gr11,cmr3gr5,cas10,cas14k,DEDDh,csa3,cas3HD,Cas14b_CAS-V-F	NA|114aa|up_0|NC_001880.1_90_432_-,NA|83aa|down_0|NC_001880.1_901_1150_+,NA|175aa|down_2|NC_001880.1_1710_2235_+,NA|318aa|down_5|NC_001880.1_4110_5064_+,NA|91aa|down_6|NC_001880.1_5114_5387_+,NA|81aa|down_7|NC_001880.1_5459_5702_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|114aa|up_0|NC_001880.1_90_432_-	NA	NA|83aa|down_0|NC_001880.1_901_1150_+	NA	NA|145aa|down_1|NC_001880.1_1139_1574_+	COG2402, COG2402, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|175aa|down_2|NC_001880.1_1710_2235_+	NA	Cas14b_CAS-V-F|307aa|down_3|NC_001880.1_2253_3174_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|74aa|down_4|NC_001880.1_3447_3669_+	pfam02547, Queuosine_synth, Queuosine biosynthesis protein	NA|318aa|down_5|NC_001880.1_4110_5064_+	NA	NA|91aa|down_6|NC_001880.1_5114_5387_+	NA	NA|81aa|down_7|NC_001880.1_5459_5702_+	NA	NA|316aa|down_8|NC_001880.1_5876_6824_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|90aa|down_9|NC_001880.1_6831_7101_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]
