assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000008785.1_ASM878v1	NC_000921	Helicobacter pylori J99, complete sequence	1	59871-59978	1	CRISPRCasFinder	no		cas3,cas14j,DEDDh	Orphan	AGAAAACCTAACTAAAGAAAAAAC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14j,DEDDh	NA|70aa|up_0|NC_000921.1_58797_59007_+,NA|190aa|down_1|NC_000921.1_63897_64467_+,NA|118aa|down_5|NC_000921.1_66646_67000_+	NA|333aa|up_9|NC_000921.1_45189_46188_-	TIGR02124, Hydrogenase_expression/formation_protein_HypE, hydrogenase expression/formation protein HypE	NA|751aa|up_8|NC_000921.1_46190_48443_-	TIGR00143, Carbamoyltransferase_HypF, [NiFe] hydrogenase maturation protein HypF	NA|331aa|up_7|NC_000921.1_48439_49432_-	COG2957, COG2957, Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism]	NA|231aa|up_6|NC_000921.1_49490_50183_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|186aa|up_5|NC_000921.1_50160_50718_-	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|344aa|up_4|NC_000921.1_51151_52183_-	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|261aa|up_3|NC_000921.1_52192_52975_-	pfam06300, Tsp45I, Tsp45I type II restriction enzyme	NA|497aa|up_2|NC_000921.1_53402_54893_-	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|1186aa|up_1|NC_000921.1_54919_58477_-	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA	NA|70aa|up_0|NC_000921.1_58797_59007_+	NA	NA|328aa|down_0|NC_000921.1_60489_61473_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|190aa|down_1|NC_000921.1_63897_64467_+	NA	NA|87aa|down_2|NC_000921.1_64482_64743_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|501aa|down_3|NC_000921.1_64753_66256_+	pfam14414, WHH, A nuclease of the HNH/ENDO VII superfamily with conserved WHH	NA|140aa|down_4|NC_000921.1_66225_66645_+	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1)	NA|118aa|down_5|NC_000921.1_66646_67000_+	NA	NA|815aa|down_6|NC_000921.1_66968_69413_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|266aa|down_7|NC_000921.1_69486_70284_-	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]	NA|200aa|down_8|NC_000921.1_70283_70883_-	TIGR00101, Urease_accessory_protein_UreG, urease accessory protein UreG	NA|257aa|down_9|NC_000921.1_70911_71682_-	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]
GCF_000008785.1_ASM878v1	NC_000921	Helicobacter pylori J99, complete sequence	2	82182-82288	2	CRISPRCasFinder	no		cas3,cas14j,DEDDh	Orphan	AACGACGACATGGGTAATAGCAACGA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14j,DEDDh	NA,NA	NA|257aa|up_9|NC_000921.1_70911_71682_-	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|171aa|up_8|NC_000921.1_71705_72218_-	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|196aa|up_7|NC_000921.1_72219_72807_-	cd13404, UreI_AmiS_like, UreI/AmiS family, proton-gated urea channel and putative amide transporters	NA|570aa|up_6|NC_000921.1_73030_74740_-	PRK13985, ureB, urease subunit alpha	NA|239aa|up_5|NC_000921.1_74743_75460_-	PRK13986, PRK13986, urease subunit beta	NA|164aa|up_4|NC_000921.1_75813_76305_-	PRK00376, lspA, lipoprotein signal peptidase	NA|446aa|up_3|NC_000921.1_76298_77636_-	PRK14324, glmM, phosphoglucosamine mutase; Provisional	NA|90aa|up_2|NC_000921.1_77725_77995_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|353aa|up_1|NC_000921.1_78113_79172_+	PRK00591, prfA, peptide chain release factor 1; Validated	NA|256aa|up_0|NC_000921.1_79585_80353_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|674aa|down_0|NC_000921.1_82799_84821_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|130aa|down_1|NC_000921.1_84970_85360_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|142aa|down_2|NC_000921.1_85356_85782_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|63aa|down_3|NC_000921.1_86133_86322_-	pfam17402, DUF5408, Family of unknown function (DUF5408)	NA|451aa|down_4|NC_000921.1_86328_87681_-	PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional	NA|458aa|down_5|NC_000921.1_87734_89108_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|691aa|down_6|NC_000921.1_89127_91200_-	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated	NA|232aa|down_7|NC_000921.1_91395_92091_-	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|310aa|down_8|NC_000921.1_92101_93031_-	TIGR00128, Malonyl_CoA-acyl_carrier_protein_transacylase, malonyl CoA-acyl carrier protein transacylase	NA|73aa|down_9|NC_000921.1_93457_93676_+	pfam04556, DpnII, DpnII restriction endonuclease
GCF_000008785.1_ASM878v1	NC_000921	Helicobacter pylori J99, complete sequence	3	946471-946672	1	PILER-CR	no		cas3,cas14j,DEDDh	Orphan	TTCAATCAAGGCACTTATAATTTTAATAACA	31	0	0	NA	NA	I-B	3	3	Orphan	cas3,cas14j,DEDDh	NA,NA|220aa|down_8|NC_000921.1_959863_960523_+	NA|382aa|up_9|NC_000921.1_927175_928321_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|677aa|up_8|NC_000921.1_928329_930360_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|521aa|up_7|NC_000921.1_931523_933086_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|528aa|up_6|NC_000921.1_933107_934691_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|up_5|NC_000921.1_935475_937020_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|816aa|up_4|NC_000921.1_937357_939805_-	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|144aa|up_3|NC_000921.1_939980_940412_-	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|1086aa|up_2|NC_000921.1_940416_943674_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|231aa|up_1|NC_000921.1_943773_944466_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|333aa|up_0|NC_000921.1_944611_945610_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|367aa|down_0|NC_000921.1_952942_954043_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|69aa|down_1|NC_000921.1_954112_954319_-	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|194aa|down_2|NC_000921.1_954487_955069_+	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|382aa|down_3|NC_000921.1_955065_956211_+	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|317aa|down_4|NC_000921.1_956179_957130_+	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|181aa|down_5|NC_000921.1_957597_958140_+	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|304aa|down_6|NC_000921.1_958155_959067_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|268aa|down_7|NC_000921.1_959063_959867_+	COG0496, SurE, Predicted acid phosphatase [General function prediction only]	NA|220aa|down_8|NC_000921.1_959863_960523_+	NA	NA|201aa|down_9|NC_000921.1_960524_961127_+	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
