The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_007622	Staphylococcus aureus RF122, complete genome	2742531	251475	322255	2742531	holin,protease,plate,integrase	Staphylococcus_phage(30.77%)	58	248219:248237	329422:329440
248219:248237	attL	GAAGAATTTAAAAATTTAA	NA	NA	NA	NA
WP_001792906.1|251475_251919_+|holin	antiholin-like murein hydrolase modulator LrgA	holin	NA	NA	NA	NA
WP_000607067.1|251911_252613_+|holin	antiholin-like protein LrgB	holin	NA	NA	NA	NA
WP_000922329.1|252720_253425_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000066923.1|253573_254365_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_042852398.1|254380_255817_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.2	9.1e-29
WP_000031270.1|256335_257097_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_042852399.1|257115_257250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000182754.1|257346_258261_-	ribokinase	NA	NA	NA	NA	NA
WP_000747873.1|258288_258693_-	D-ribose pyranase	NA	NA	NA	NA	NA
WP_000029197.1|258707_259589_-	ribose transporter RbsU	NA	NA	NA	NA	NA
WP_000757873.1|259820_260819_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_001159769.1|261199_261589_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001044502.1|261717_263094_-	MFS transporter	NA	NA	NA	NA	NA
WP_000337384.1|263327_264320_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000736801.1|264639_265590_+	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.2e-16
WP_000570068.1|265641_266301_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	37.2	4.5e-23
WP_000806126.1|266314_267235_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000848766.1|267231_268398_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000038507.1|268465_269989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001240826.1|272816_273110_+	WXG100 family type VII secretion effector EsxA	NA	NA	NA	NA	NA
WP_000728969.1|273192_276222_+	type VII secretion protein EsaA	NA	NA	NA	NA	NA
WP_001071606.1|276650_276893_+	type VII secretion protein EsaB	NA	NA	NA	NA	NA
WP_000240338.1|276905_278240_+	type VII secretion protein EssB	NA	NA	NA	NA	NA
WP_000549269.1|278261_282701_+	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	24.3	1.4e-27
WP_001010292.1|282730_283123_+	type VII secretion substrate EsaC	NA	NA	NA	NA	NA
WP_000509673.1|283138_283453_+	WXG100 family type VII secretion effector EsxB	NA	NA	NA	NA	NA
WP_000655883.1|283452_284127_+	DUF5081 family protein	NA	NA	NA	NA	NA
WP_000175721.1|284126_284444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001008478.1|286308_286800_+	TIGR01741 family protein	NA	NA	NA	NA	NA
WP_000208411.1|287001_287685_+	DUF5079 family protein	NA	NA	NA	NA	NA
WP_000141999.1|288659_289160_+	TIGR01741 family protein	NA	NA	NA	NA	NA
WP_000142118.1|289170_289671_+	TIGR01741 family protein	NA	NA	NA	NA	NA
WP_000142083.1|289681_290170_+	TIGR01741 family protein	NA	NA	NA	NA	NA
WP_000822164.1|290775_291150_+	DUF4467 domain-containing protein	NA	NA	NA	NA	NA
WP_000659769.1|291948_292770_-	formate/nitrite transporter family protein	NA	NA	NA	NA	NA
WP_000745092.1|293008_294316_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_001033892.1|294898_295789_+	5'-nucleotidase, lipoprotein e(P4) family	NA	NA	NA	NA	NA
WP_000477935.1|296037_297087_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000911022.1|297099_297777_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	3.5e-31
WP_000364864.1|297984_299016_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_001283967.1|299358_300477_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000002078.1|300451_301375_+	pseudouridine-5'-phosphate glycosidase	NA	NA	NA	NA	NA
WP_001022976.1|301385_302606_+	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA	NA
WP_000665720.1|302710_304243_-	sodium:solute symporter	NA	NA	NA	NA	NA
WP_001030748.1|304282_305164_-	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
WP_000291433.1|305322_306183_+	ROK family protein	NA	NA	NA	NA	NA
WP_000667382.1|306459_307260_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000936728.1|307399_308068_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_001077701.1|308197_309511_-	YjiH family protein	NA	NA	NA	NA	NA
WP_000266855.1|311956_313162_-|integrase	site-specific integrase	integrase	A0A1X9H094	Staphylococcus_phage	97.8	1.7e-217
WP_000385073.1|313261_313915_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000067151.1|314610_316077_+|plate	BppU family phage baseplate upper protein	plate	A0A0K1LKC9	Staphylococcus_phage	99.4	2.2e-272
WP_001166605.1|316076_316466_+	DUF2977 domain-containing protein	NA	Q4ZCZ7	Staphylococcus_virus	94.6	7.1e-61
WP_000916016.1|316458_316623_+	XkdX family protein	NA	M9QX31	Staphylococcus_phage	94.4	2.1e-22
WP_000466772.1|316668_316968_+	DUF2951 family protein	NA	Q4ZCK3	Staphylococcus_virus	94.9	2.2e-30
WP_000072567.1|317561_318794_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	36.3	6.8e-49
WP_000448764.1|318845_319148_+|holin	phage holin	holin	B7T0L0	Staphylococcus_virus	94.0	3.8e-46
WP_000448196.1|321667_322255_+	hypothetical protein	NA	Q4ZBG7	Staphylococcus_virus	99.5	7.1e-97
329422:329440	attR	GAAGAATTTAAAAATTTAA	NA	NA	NA	NA
>prophage 2
NC_007622	Staphylococcus aureus RF122, complete genome	2742531	385713	404356	2742531	coat,terminase,integrase	Staphylococcus_phage(65.0%)	25	388732:388791	404622:404695
WP_000264071.1|385713_387180_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424972.1|387204_388746_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.6e-23
388732:388791	attL	ATTGAGTGGGAATAATTATATATAGCAAATGATAGGCTGGAGTTACCGTAATTACGCGGT	NA	NA	NA	NA
WP_000592971.1|388839_389976_-|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	42.5	1.0e-75
WP_000819104.1|390059_390845_-	helix-turn-helix transcriptional regulator	NA	A0A1S5S8T5	Streptococcus_phage	34.1	7.5e-09
WP_000494396.1|390961_391189_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000080597.1|391234_391495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000773831.1|391541_391697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|391681_391885_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403836.1|391886_392270_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	97.6	1.1e-63
WP_001103956.1|392270_392588_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	9.3e-19
WP_001002694.1|392651_393521_+	primase C-terminal domain-containing protein	NA	Q4ZE74	Staphylococcus_phage	94.5	4.2e-162
WP_000447453.1|393534_395244_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	96.1	0.0e+00
WP_000356932.1|395574_395955_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	98.4	1.2e-68
WP_001019774.1|395951_396593_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	95.3	5.9e-113
WP_000443639.1|396939_397281_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	6.4e-58
WP_000846288.1|397292_397871_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	37.4	2.2e-26
WP_000853272.1|397888_398107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771381.1|398157_398685_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.0	4.1e-88
WP_078062700.1|398816_399029_+	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	91.4	1.3e-29
WP_001293068.1|399025_399595_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.4	1.7e-100
WP_001035596.1|399749_400454_-	toxic shock syndrome toxin TSST-1	NA	NA	NA	NA	NA
WP_025175769.1|400863_401265_+	hypothetical protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	62.7	2.0e-26
WP_000813312.1|401382_401895_+	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	99.4	1.9e-69
WP_001043550.1|402666_403467_+	exotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	44.2	2.8e-51
WP_000746599.1|403633_404356_-	staphylococcal enterotoxin type L	NA	A0A1X9H080	Staphylococcus_phage	34.9	2.1e-26
404622:404695	attR	ATTGAGTGGGAATAATTATATATAGCAAATGATAGGCTGGAGTTACCGTAATTACGCGGTTTCCAGCCTTTTTT	NA	NA	NA	NA
>prophage 3
NC_007622	Staphylococcus aureus RF122, complete genome	2742531	720526	728346	2742531		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|720526_721582_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|721581_722268_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|722242_722716_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093557.1|723057_723498_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|723777_724362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062971.1|724460_725174_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941335.1|725177_725597_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	4.9e-07
WP_000446723.1|725598_726267_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604519.1|726617_727211_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	5.8e-38
WP_001217803.1|727194_728346_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.3	1.6e-23
>prophage 4
NC_007622	Staphylococcus aureus RF122, complete genome	2742531	740317	753074	2742531		uncultured_Caudovirales_phage(50.0%)	11	NA	NA
WP_000663036.1|740317_741376_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	2.3e-21
WP_000197266.1|741533_742076_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429019.1|742681_743599_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	6.2e-07
WP_000193751.1|743880_745386_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|745725_746226_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|746245_747112_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|747912_748311_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855507.1|748273_750379_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
WP_000562498.1|750496_751468_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_031901244.1|751908_752064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011382221.1|752102_753074_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.6	1.6e-138
>prophage 5
NC_007622	Staphylococcus aureus RF122, complete genome	2742531	922626	976100	2742531	holin,transposase,bacteriocin,protease,tRNA	Streptococcus_phage(37.5%)	47	NA	NA
WP_001066885.1|922626_923943_-|transposase	ISL3-like element ISSau8 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	32.3	7.8e-43
WP_000915160.1|924141_924513_-	DUF3899 domain-containing protein	NA	NA	NA	NA	NA
WP_000521530.1|924755_925682_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000829639.1|925681_926752_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000140050.1|926767_927850_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	8.4e-19
WP_000786751.1|927839_928781_+	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.4	3.5e-05
WP_000197093.1|928799_930455_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011382232.1|930623_931559_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000234062.1|931548_932568_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001064123.1|933653_934574_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	25.1	5.7e-08
WP_000448934.1|936343_937333_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|937627_938023_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217733.1|938393_939113_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959274.1|939232_940219_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082719.1|940266_942075_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	2.7e-46
WP_000896697.1|942534_943341_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214067.1|943363_943729_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224617.1|943832_944426_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242108.1|944611_944959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|944975_945611_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|945627_946437_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669927.1|946433_947288_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|947308_948694_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395144.1|948703_950548_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933193.1|950825_951596_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|951789_952875_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570696.1|953216_954785_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889173.1|954927_955686_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|955879_956389_+	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001154230.1|956501_957692_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258639.1|957669_958845_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340126.1|959277_960762_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001798480.1|960742_961003_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049957.1|961002_962565_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	2.2e-36
WP_000928413.1|962866_963670_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_078062650.1|963888_966213_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.1	3.1e-10
WP_000021871.1|966229_967588_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414188.1|967726_969238_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000283455.1|969736_970306_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|970515_970734_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|970814_971801_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|971999_972176_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|972190_972793_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_099119695.1|973093_973171_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_042852647.1|973709_973811_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078062708.1|973820_974093_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870792.1|974135_976100_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
>prophage 6
NC_007622	Staphylococcus aureus RF122, complete genome	2742531	1010924	1019397	2742531		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861570.1|1010924_1011407_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010402.1|1011393_1012518_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174056.1|1012521_1013226_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	40.8	1.5e-45
WP_000848350.1|1013225_1013489_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666795.1|1013490_1014162_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032743.1|1014154_1016344_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.5	3.0e-140
WP_000483725.1|1016322_1017807_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.3	7.9e-44
WP_000030809.1|1017799_1018828_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.0e-61
WP_000238676.1|1018830_1019397_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	1.4e-28
>prophage 7
NC_007622	Staphylococcus aureus RF122, complete genome	2742531	1545377	1553689	2742531	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213911.1|1545377_1546163_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1546288_1547179_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062167.1|1547188_1548535_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	4.1e-55
WP_000683918.1|1548648_1549749_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	8.0e-09
WP_000624573.1|1549751_1550429_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1550559_1551666_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217256.1|1551889_1553689_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 8
NC_007622	Staphylococcus aureus RF122, complete genome	2742531	1622790	1631833	2742531	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364543.1|1622790_1623309_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_000594979.1|1623330_1625604_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	4.7e-64
WP_000749788.1|1625806_1628086_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1628360_1628621_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112041.1|1628639_1629779_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	2.7e-84
WP_001019178.1|1629801_1630827_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005765.1|1630828_1631833_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 9
NC_007622	Staphylococcus aureus RF122, complete genome	2742531	1766980	1800863	2742531		Staphylococcus_phage(93.55%)	37	NA	NA
WP_000526539.1|1766980_1767934_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764416.1|1767930_1768494_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	98.9	5.4e-102
WP_000757543.1|1768613_1769015_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266087.1|1769586_1770414_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_078062663.1|1770416_1770536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196359.1|1770647_1771649_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	3.4e-184
WP_001008551.1|1771770_1772235_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159023.1|1772247_1773429_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	3.3e-226
WP_000493886.1|1773439_1774072_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
WP_000077339.1|1774078_1775122_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.3	5.0e-194
WP_001261663.1|1775602_1777105_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221190.1|1777626_1777941_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_000989109.1|1777940_1779233_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	97.7	3.7e-223
WP_000163238.1|1779250_1779646_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	97.7	2.6e-71
WP_001032833.1|1780046_1780901_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1781176_1781401_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671046.1|1781599_1782070_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	97.4	2.2e-80
WP_001153740.1|1782182_1782626_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1782612_1783056_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001096497.1|1784412_1785126_-	transaldolase	NA	M1PR54	Cyanophage	34.8	2.1e-18
WP_000091439.1|1785383_1785686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200547.1|1785941_1786307_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	97.5	8.1e-59
WP_000623471.1|1786303_1786657_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453318.1|1786905_1787739_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	1.7e-157
WP_000366162.1|1787949_1788858_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	1.3e-137
WP_000933822.1|1788982_1790176_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109916.1|1790546_1792139_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_078062717.1|1792435_1793182_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	2.3e-140
WP_000672005.1|1793186_1793660_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	97.5	4.0e-82
WP_000718107.1|1793725_1793983_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778533.1|1793979_1794981_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.4	2.2e-183
WP_000348355.1|1794985_1796464_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	1.8e-282
WP_078062664.1|1797379_1798030_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	64.8	1.0e-32
WP_000070639.1|1798110_1799106_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	95.6	1.5e-70
WP_000669047.1|1799181_1799808_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	91.8	3.1e-90
WP_000627544.1|1799848_1800190_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	2.3e-55
WP_000414217.1|1800290_1800863_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
>prophage 10
NC_007622	Staphylococcus aureus RF122, complete genome	2742531	1813002	1887176	2742531	tail,integrase,holin,head,portal,terminase,plate,protease,capsid	Staphylococcus_virus(51.76%)	89	1835456:1835473	1891582:1891599
WP_000028674.1|1813002_1814559_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.6	3.7e-286
WP_001038721.1|1814921_1815641_-|protease	serine protease	protease	A0A2H4PQP1	Staphylococcus_phage	94.1	9.9e-125
WP_001038768.1|1815809_1816526_-|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	60.5	2.5e-80
WP_001038860.1|1816650_1817370_-|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	91.6	5.1e-121
WP_001039452.1|1817427_1818150_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	95.4	1.4e-126
WP_001092760.1|1819933_1820512_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	59.6	1.2e-48
WP_000469595.1|1820985_1821204_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	81.9	1.4e-26
WP_158297484.1|1821238_1821388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000581547.1|1821680_1822442_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	95.7	2.5e-126
WP_001096794.1|1822438_1823131_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	97.0	5.4e-120
WP_000849075.1|1823153_1824527_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	94.3	2.8e-245
WP_000517786.1|1824536_1825055_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	97.7	1.9e-93
WP_000130813.1|1825070_1826315_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	87.2	9.5e-208
WP_001092603.1|1826307_1829301_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	92.2	0.0e+00
WP_000432510.1|1829365_1829509_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	100.0	3.8e-20
WP_000416758.1|1830242_1830386_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	78.7	2.0e-13
WP_000782469.1|1830625_1831609_-	leukocidin/hemolysin toxin family protein	NA	A0A2H4PQH7	Staphylococcus_phage	98.8	6.8e-185
WP_000473600.1|1831610_1832546_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	99.3	2.5e-173
WP_000595639.1|1834172_1834769_+	membrane protein	NA	NA	NA	NA	NA
WP_000711491.1|1834936_1836283_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	50.7	1.6e-64
1835456:1835473	attL	TTATTTAATGCTGAAACT	NA	NA	NA	NA
WP_000617702.1|1836868_1837105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000848319.1|1837125_1837902_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_001236366.1|1839537_1840293_-	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	40.6	1.6e-37
WP_000764692.1|1840331_1841117_-	staphylococcal enterotoxin type C1/U	NA	A0A097PAT7	Streptococcus_pyogenes_phage	42.7	2.9e-45
WP_000713850.1|1841270_1841999_-	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	39.2	5.1e-28
WP_148141455.1|1843036_1843819_-	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	38.6	7.9e-35
WP_001148141.1|1844929_1846375_-	SH3 domain-containing protein	NA	B8QIR1	Staphylococcus_phage	100.0	1.4e-295
WP_000354126.1|1846355_1846793_-|holin	phage holin	holin	B7T0F0	Staphylococcus_virus	100.0	3.1e-73
WP_000276793.1|1846843_1848856_-|plate	BppU family phage baseplate upper protein	plate	Q4ZA81	Staphylococcus_virus	95.8	0.0e+00
WP_000524059.1|1848868_1850773_-	glucosaminidase domain-containing protein	NA	B7T0E8	Staphylococcus_virus	99.2	0.0e+00
WP_000467322.1|1850909_1851215_-	DUF2951 family protein	NA	A0A059T679	Staphylococcus_phage	100.0	5.2e-43
WP_078062719.1|1851254_1851428_-	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	98.2	3.0e-27
WP_000705903.1|1851402_1851810_-	DUF2977 domain-containing protein	NA	Q4ZA86	Staphylococcus_virus	95.5	6.5e-41
WP_000259642.1|1851809_1853633_-|plate	phage baseplate upper protein	plate	B7T0E4	Staphylococcus_virus	99.5	0.0e+00
WP_000066421.1|1853632_1855543_-	hypothetical protein	NA	B7T0E3	Staphylococcus_virus	98.7	0.0e+00
WP_000152710.1|1855557_1857459_-|tail	phage tail protein	tail	B7T0E2	Staphylococcus_virus	99.8	0.0e+00
WP_000350680.1|1857467_1858415_-|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	100.0	2.1e-183
WP_000141459.1|1858427_1861892_-	hypothetical protein	NA	S4V989	Staphylococcus_phage	94.4	4.0e-232
WP_000105582.1|1861908_1862253_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	99.1	7.2e-57
WP_001100161.1|1862282_1862648_-	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_000002584.1|1862709_1863291_-|tail	phage major tail protein, TP901-1 family	tail	B7T0D7	Staphylococcus_virus	100.0	3.1e-105
WP_000188647.1|1863308_1863692_-	hypothetical protein	NA	B7T0D6	Staphylococcus_virus	100.0	3.5e-68
WP_001017820.1|1863703_1864051_-	HK97 gp10 family phage protein	NA	B7T0D5	Staphylococcus_virus	100.0	2.4e-60
WP_001268301.1|1864050_1864353_-	hypothetical protein	NA	A1KX32	Staphylococcus_virus	93.0	1.1e-48
WP_000209100.1|1864349_1864682_-|head,tail	phage head-tail connector protein	head,tail	B7T0D4	Staphylococcus_virus	100.0	5.5e-54
WP_001114084.1|1864690_1864978_-	hypothetical protein	NA	B7T0D3	Staphylococcus_virus	100.0	1.8e-45
WP_000438501.1|1864999_1865974_-|capsid	phage major capsid protein	capsid	B7T0D2	Staphylococcus_virus	100.0	2.8e-183
WP_000354302.1|1865987_1866602_-	DUF4355 domain-containing protein	NA	B7T0D1	Staphylococcus_virus	99.0	3.0e-37
WP_000072209.1|1866736_1866907_-	hypothetical protein	NA	B7T0D0	Staphylococcus_virus	100.0	1.1e-23
WP_001668346.1|1866979_1867975_-|capsid	minor capsid protein	capsid	E0Y3K7	Staphylococcus_virus	99.7	1.7e-183
WP_000921874.1|1867975_1869517_-|portal	phage portal protein	portal	B7T0C7	Staphylococcus_virus	100.0	2.9e-291
WP_000273013.1|1869527_1870817_-|terminase	PBSX family phage terminase large subunit	terminase	B7T0C6	Staphylococcus_virus	100.0	8.7e-257
WP_001038242.1|1870819_1871314_-|terminase	terminase small subunit	terminase	B7T0C5	Staphylococcus_virus	100.0	6.0e-89
WP_000058634.1|1871501_1871921_-	transcriptional regulator	NA	B7T0C4	Staphylococcus_virus	100.0	1.1e-70
WP_000989998.1|1871935_1872082_-	hypothetical protein	NA	A0A059T5A8	Staphylococcus_phage	100.0	2.2e-15
WP_000595248.1|1872082_1872256_-	transcriptional activator RinB	NA	B7T0C3	Staphylococcus_virus	100.0	1.3e-22
WP_000195774.1|1872252_1872459_-	DUF1381 domain-containing protein	NA	B7T0C2	Staphylococcus_virus	100.0	1.4e-20
WP_000120373.1|1872455_1872701_-	hypothetical protein	NA	B7T0C1	Staphylococcus_virus	100.0	5.3e-22
WP_000185630.1|1872737_1873274_-	dUTP diphosphatase	NA	B7T0C0	Staphylococcus_virus	100.0	1.6e-95
WP_000834722.1|1873273_1873435_-	hypothetical protein	NA	A0A0K1LKF5	Staphylococcus_phage	100.0	2.3e-21
WP_001064959.1|1873421_1873676_-	DUF1024 family protein	NA	B7T0B8	Staphylococcus_virus	100.0	1.7e-39
WP_000178876.1|1873980_1874229_-	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	100.0	2.7e-42
WP_000022724.1|1874228_1874483_-	DUF3310 domain-containing protein	NA	B7T0B5	Staphylococcus_virus	100.0	9.7e-43
WP_000536057.1|1874482_1874845_-	hypothetical protein	NA	B7T0B4	Staphylococcus_virus	100.0	1.2e-62
WP_001187262.1|1874845_1875031_-	DUF3113 family protein	NA	B7T0B3	Staphylococcus_virus	100.0	3.2e-27
WP_000049798.1|1875035_1875440_-	DUF1064 domain-containing protein	NA	G4KNP2	Staphylococcus_phage	100.0	1.6e-68
WP_001123678.1|1875450_1875672_-	DUF3269 family protein	NA	B7T0B1	Staphylococcus_virus	100.0	9.9e-36
WP_001024407.1|1875674_1875890_-	hypothetical protein	NA	B7T0B0	Staphylococcus_virus	100.0	4.8e-35
WP_001106162.1|1875886_1877128_-	AAA family ATPase	NA	B7T0A9	Staphylococcus_virus	100.0	2.0e-229
WP_001132245.1|1877124_1877481_-	hypothetical protein	NA	B7T0A8	Staphylococcus_virus	100.0	8.2e-64
WP_001037656.1|1877480_1878236_-	DnaD domain protein	NA	B7T0A7	Staphylococcus_virus	100.0	1.7e-143
WP_001121799.1|1878232_1878904_-	hypothetical protein	NA	B7T0A6	Staphylococcus_virus	100.0	6.2e-129
WP_000934649.1|1878917_1879343_-	single-stranded DNA-binding protein	NA	B7T0A5	Staphylococcus_virus	100.0	1.7e-68
WP_000139723.1|1879345_1879966_-	DUF1071 domain-containing protein	NA	B7T0A4	Staphylococcus_virus	100.0	3.0e-114
WP_000815401.1|1879958_1880180_-	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_000291085.1|1880189_1880450_-	DUF1108 family protein	NA	A9CR59	Staphylococcus_phage	100.0	1.2e-43
WP_000163429.1|1880454_1880757_-	DUF2482 family protein	NA	A0A0K1LKL3	Staphylococcus_phage	100.0	2.6e-47
WP_001280579.1|1880821_1881136_-	hypothetical protein	NA	B7T0A0	Staphylococcus_virus	100.0	1.7e-52
WP_000048120.1|1881140_1881311_-	DUF1270 domain-containing protein	NA	B7T099	Staphylococcus_virus	100.0	5.7e-23
WP_001093507.1|1881325_1881541_-	DUF771 domain-containing protein	NA	B7T098	Staphylococcus_virus	100.0	6.3e-35
WP_001148588.1|1881556_1882306_-	phage antirepressor KilAC domain-containing protein	NA	B7T097	Staphylococcus_virus	100.0	1.5e-136
WP_011382317.1|1882362_1882953_+	hypothetical protein	NA	B7T096	Staphylococcus_virus	100.0	5.4e-105
WP_000939498.1|1882974_1883118_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_001148568.1|1883133_1883922_-	phage antirepressor KilAC domain-containing protein	NA	R9QSV3	Staphylococcus_phage	99.6	3.6e-144
WP_000916583.1|1883937_1884153_-	hypothetical protein	NA	A0A2H4J3T8	uncultured_Caudovirales_phage	91.5	2.3e-29
WP_000159526.1|1884350_1884977_+	helix-turn-helix domain-containing protein	NA	A0A2H4J3T7	uncultured_Caudovirales_phage	87.5	1.1e-98
WP_000896616.1|1885033_1885534_+	hypothetical protein	NA	B7T094	Staphylococcus_virus	100.0	1.1e-71
WP_000826267.1|1885537_1886053_+	hypothetical protein	NA	I1W624	Staphylococcus_phage	98.8	3.6e-36
WP_000115735.1|1886111_1887176_+|integrase	tyrosine-type recombinase/integrase	integrase	B7T092	Staphylococcus_virus	99.4	3.5e-203
1891582:1891599	attR	TTATTTAATGCTGAAACT	NA	NA	NA	NA
>prophage 11
NC_007622	Staphylococcus aureus RF122, complete genome	2742531	2028145	2040397	2742531	coat,integrase	Staphylococcus_phage(81.25%)	19	2021992:2022011	2038419:2038438
2021992:2022011	attL	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_045181470.1|2028145_2028358_-	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	98.6	1.1e-31
WP_000771381.1|2028489_2029017_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.0	4.1e-88
WP_000853272.1|2029067_2029286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846287.1|2029303_2029882_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	37.9	1.0e-26
WP_001190614.1|2029893_2030235_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	100.0	2.9e-58
WP_001047699.1|2030751_2031393_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	93.0	2.1e-110
WP_000356942.1|2031389_2031770_-	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	96.8	1.7e-67
WP_000447477.1|2032078_2033788_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	92.4	5.9e-301
WP_001002697.1|2033801_2034671_-	primase C-terminal domain-containing protein	NA	Q4ZE74	Staphylococcus_phage	95.2	3.4e-164
WP_001103950.1|2034737_2035055_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	53.4	7.1e-19
WP_001038251.1|2035055_2035415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001058497.1|2035416_2035629_-	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	72.1	2.4e-18
WP_000708436.1|2035621_2035768_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000481970.1|2035764_2036082_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	96.2	1.7e-49
WP_000794657.1|2036085_2036292_-	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	71.6	6.4e-21
WP_000672427.1|2036443_2037166_+	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	38.2	3.3e-35
WP_000179355.1|2037179_2038352_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	96.2	1.7e-214
WP_000240641.1|2038420_2040037_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.5	1.3e-156
2038419:2038438	attR	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_000917289.1|2040112_2040397_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
