assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000009065.1_ASM906v1	NC_003143	Yersinia pestis CO92, complete genome	1	1646638-1646759	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Orphan	CTTAATGCCAATATTAATCGACATAATCAATTG	33	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA,NA|73aa|down_0|NC_003143.1_1647115_1647334_+	NA|662aa|up_9|NC_003143.1_1632890_1634876_+	PRK11054, helD, DNA helicase IV; Provisional	NA|155aa|up_8|NC_003143.1_1634936_1635401_-	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|227aa|up_7|NC_003143.1_1635579_1636260_-	PRK03641, PRK03641, DUF2057 family protein	NA|139aa|up_6|NC_003143.1_1636575_1636992_+	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only]	NA|106aa|up_5|NC_003143.1_1637100_1637418_-	PRK14129, PRK14129, heat shock protein HspQ; Provisional	NA|397aa|up_4|NC_003143.1_1637478_1638669_-	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA|93aa|up_3|NC_003143.1_1638762_1639041_+	PRK14426, PRK14426, acylphosphatase; Provisional	NA|110aa|up_2|NC_003143.1_1639092_1639422_-	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]	NA|806aa|up_1|NC_003143.1_1643067_1645485_-	pfam01565, FAD_binding_4, FAD binding domain	NA|249aa|up_0|NC_003143.1_1645638_1646385_-	PRK06172, PRK06172, SDR family oxidoreductase	NA|73aa|down_0|NC_003143.1_1647115_1647334_+	NA	NA|175aa|down_1|NC_003143.1_1647597_1648122_+	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]	NA|428aa|down_2|NC_003143.1_1648111_1649395_+	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II	NA|246aa|down_3|NC_003143.1_1649396_1650134_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|413aa|down_4|NC_003143.1_1650149_1651388_+	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]	NA|240aa|down_5|NC_003143.1_1651380_1652100_+	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|251aa|down_6|NC_003143.1_1652101_1652854_+	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated	NA|263aa|down_7|NC_003143.1_1652856_1653645_+	cd05233, SDR_c, classical (c) SDRs	NA|147aa|down_8|NC_003143.1_1653731_1654172_+	pfam13924, Lipocalin_5, Lipocalin-like domain	NA|83aa|down_9|NC_003143.1_1654209_1654458_+	PRK07117, PRK07117, acyl carrier protein; Validated
GCF_000009065.1_ASM906v1	NC_003143	Yersinia pestis CO92, complete genome	2	1773655-1773862	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	DEDDh	cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Unclear	GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	2,3,3	3	Orphan	cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA|16aa|up_8|NC_003143.1_1765315_1765363_-,NA|38aa|up_5|NC_003143.1_1767021_1767135_-,NA	NA|300aa|up_9|NC_003143.1_1764133_1765033_-	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed	NA|16aa|up_8|NC_003143.1_1765315_1765363_-	NA	NA|276aa|up_7|NC_003143.1_1765738_1766566_+	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|97aa|up_6|NC_003143.1_1766720_1767011_-	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein	NA|38aa|up_5|NC_003143.1_1767021_1767135_-	NA	NA|332aa|up_4|NC_003143.1_1767399_1768395_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|230aa|up_3|NC_003143.1_1768391_1769081_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|298aa|up_2|NC_003143.1_1769038_1769932_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|364aa|up_1|NC_003143.1_1770217_1771309_+	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|464aa|up_0|NC_003143.1_1771768_1773160_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	DEDDh|477aa|down_0|NC_003143.1_1773896_1775327_-	PRK11779, sbcB, exonuclease I; Provisional	NA|370aa|down_1|NC_003143.1_1775619_1776729_+	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs	NA|106aa|down_2|NC_003143.1_1777162_1777480_+	PRK05423, PRK05423, DUF496 family protein	NA|403aa|down_3|NC_003143.1_1777850_1779059_+	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1051aa|down_4|NC_003143.1_1779021_1782174_-	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|435aa|down_5|NC_003143.1_1783198_1784503_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|141aa|down_6|NC_003143.1_1784511_1784934_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|247aa|down_7|NC_003143.1_1785361_1786102_+	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|281aa|down_8|NC_003143.1_1786149_1786992_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|426aa|down_9|NC_003143.1_1787023_1788301_+	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA
GCF_000009065.1_ASM906v1	NC_003143	Yersinia pestis CO92, complete genome	3	2769294-2769802	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Type I-F	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	2	2	2769682-2769713|2769742-2769774	NC_003143.1_2374731-2374762|NC_003143.1_2380643-2380611	I-F:I-F:I-F	8,8,7	8	TypeI-F	cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA|70aa|up_9|NC_003143.1_2757032_2757242_-,NA|425aa|down_1|NC_003143.1_2771966_2773241_-,NA|372aa|down_2|NC_003143.1_2773279_2774395_-	NA|70aa|up_9|NC_003143.1_2757032_2757242_-	NA	NA|453aa|up_8|NC_003143.1_2757365_2758724_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|168aa|up_7|NC_003143.1_2758770_2759274_+	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy    production and conversion]	NA|340aa|up_6|NC_003143.1_2759284_2760304_+	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	cas6f|185aa|up_5|NC_003143.1_2760381_2760936_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|335aa|up_4|NC_003143.1_2760946_2761951_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|317aa|up_3|NC_003143.1_2761968_2762919_-	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas8f|449aa|up_2|NC_003143.1_2762915_2764262_-	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1	cas3f|1096aa|up_1|NC_003143.1_2764669_2767957_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas1|327aa|up_0|NC_003143.1_2767953_2768934_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|415aa|down_0|NC_003143.1_2770139_2771384_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|425aa|down_1|NC_003143.1_2771966_2773241_-	NA	NA|372aa|down_2|NC_003143.1_2773279_2774395_-	NA	NA|313aa|down_3|NC_003143.1_2774517_2775456_-	pfam08950, DUF1861, Protein of unknown function (DUF1861)	NA|352aa|down_4|NC_003143.1_2775482_2776538_-	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase	NA|275aa|down_5|NC_003143.1_2776684_2777509_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|292aa|down_6|NC_003143.1_2777509_2778385_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|429aa|down_7|NC_003143.1_2778493_2779780_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|347aa|down_8|NC_003143.1_2780051_2781092_+	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria	NA|463aa|down_9|NC_003143.1_2781108_2782497_+	PRK15414, PRK15414, phosphomannomutase
GCF_000009065.1_ASM906v1	NC_003143	Yersinia pestis CO92, complete genome	4	2895283-2895613	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no		cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Orphan	GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	2	2	2895311-2895343|2895554-2895585	NC_003143.1_2382983-2383015|NC_003143.1_2380297-2380328	I-F:I-F:I-F	4,5,5	5	Orphan	cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA,NA	NA|152aa|up_9|NC_003143.1_2878856_2879312_-	PRK01816, PRK01816, hypothetical protein; Provisional	NA|401aa|up_8|NC_003143.1_2879733_2880936_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|713aa|up_7|NC_003143.1_2881118_2883257_+	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|345aa|up_6|NC_003143.1_2883522_2884557_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|148aa|up_5|NC_003143.1_2884923_2885367_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|85aa|up_4|NC_003143.1_2885535_2885790_+	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|403aa|up_3|NC_003143.1_2885811_2887020_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|293aa|up_2|NC_003143.1_2887053_2887932_-	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|1993aa|up_1|NC_003143.1_2887988_2893967_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|183aa|up_0|NC_003143.1_2894373_2894922_-	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown]	NA|285aa|down_0|NC_003143.1_2895616_2896471_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|509aa|down_1|NC_003143.1_2896776_2898303_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|642aa|down_2|NC_003143.1_2898337_2900263_+	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism]	NA|310aa|down_3|NC_003143.1_2901667_2902597_+	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins	NA|516aa|down_4|NC_003143.1_2902645_2904193_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|343aa|down_5|NC_003143.1_2904204_2905233_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|378aa|down_6|NC_003143.1_2905256_2906390_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|657aa|down_7|NC_003143.1_2906421_2908392_+	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|353aa|down_8|NC_003143.1_2908406_2909465_+	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|272aa|down_9|NC_003143.1_2909474_2910290_+	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
GCF_000009065.1_ASM906v1	NC_003143	Yersinia pestis CO92, complete genome	5	4417249-4417360	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Orphan	AAAGCACATTTGAGCAGCGAGTGAAG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA,NA|90aa|down_1|NC_003143.1_4419279_4419549_-	NA|268aa|up_9|NC_003143.1_4400742_4401546_-	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|443aa|up_8|NC_003143.1_4401610_4402939_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|603aa|up_7|NC_003143.1_4403014_4404823_-	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|206aa|up_6|NC_003143.1_4404988_4405606_-	pfam06438, HasA, Heme-binding protein A (HasA)	NA|831aa|up_5|NC_003143.1_4405827_4408320_-	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|458aa|up_4|NC_003143.1_4408918_4410292_-	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|259aa|up_3|NC_003143.1_4410458_4411235_-	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis	NA|335aa|up_2|NC_003143.1_4411400_4412405_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|388aa|up_1|NC_003143.1_4412655_4413819_+	PRK05111, PRK05111, acetylornithine deacetylase; Provisional	NA|879aa|up_0|NC_003143.1_4414192_4416829_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|452aa|down_0|NC_003143.1_4417570_4418925_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|90aa|down_1|NC_003143.1_4419279_4419549_-	NA	NA|155aa|down_2|NC_003143.1_4419713_4420178_-	pfam06092, DUF943, Enterobacterial putative membrane protein (DUF943)	NA|59aa|down_3|NC_003143.1_4420161_4420338_-	TIGR03034, TIGR03034, conserved hypothetical protein	NA|474aa|down_4|NC_003143.1_4421259_4422681_+	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed	NA|816aa|down_5|NC_003143.1_4422843_4425291_-	PRK14986, PRK14986, glycogen phosphorylase; Provisional	NA|477aa|down_6|NC_003143.1_4425459_4426890_-	PRK00654, glgA, glycogen synthase GlgA	NA|663aa|down_7|NC_003143.1_4428397_4430386_-	PRK03705, PRK03705, glycogen debranching protein GlgX	NA|728aa|down_8|NC_003143.1_4430387_4432571_-	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|566aa|down_9|NC_003143.1_4433076_4434774_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]
