The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_004757	Nitrosomonas europaea ATCC 19718, complete genome	2812094	12863	21533	2812094		Acinetobacter_phage(50.0%)	8	NA	NA
WP_011110662.1|12863_14627_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.4	6.3e-64
WP_011110663.1|14770_15367_-	cytochrome P460 family protein	NA	NA	NA	NA	NA
WP_011110664.1|15450_16371_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	42.8	1.4e-51
WP_011110665.1|16372_17398_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	48.5	2.3e-82
WP_011110666.1|17394_17994_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	65.3	2.1e-72
WP_011110667.1|18114_19614_+	HAMP domain-containing histidine kinase	NA	Q6XLV6	Feldmannia_irregularis_virus	23.6	2.1e-07
WP_011110668.1|19610_20153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011110669.1|20165_21533_+	sigma 54-interacting transcriptional regulator	NA	W8CYM9	Bacillus_phage	36.2	1.1e-07
>prophage 2
NC_004757	Nitrosomonas europaea ATCC 19718, complete genome	2812094	268952	317307	2812094	tRNA,transposase,integrase	Mannheimia_phage(37.5%)	50	263069:263116	270332:270379
263069:263116	attL	GACTCATAATCCCTTGGTCGTAGGTTCAAGTCCTACCAGACCCACCAT	NA	NA	NA	NA
WP_011110880.1|268952_270203_-|integrase	integrase family protein	integrase	A0A221SAN4	Ralstonia_phage	24.2	1.4e-12
WP_011110881.1|270334_271894_-	recombinase family protein	NA	NA	NA	NA	NA
270332:270379	attR	GACTCATAATCCCTTGGTCGTAGGTTCAAGTCCTACCAGACCCACCAT	NA	NA	NA	NA
WP_143023732.1|271907_272165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011110883.1|272566_273130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011110833.1|273265_274309_+|transposase	IS481 family transposase	transposase	A0A0M3LS26	Mannheimia_phage	73.9	1.6e-147
WP_011110884.1|274351_277450_-	SEL1-like repeat protein	NA	NA	NA	NA	NA
WP_011110885.1|277611_277908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_143023789.1|278143_278509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143023791.1|278663_279698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011110889.1|281567_282023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143023788.1|282044_283664_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_050731223.1|283771_284104_+	LysE family transporter	NA	NA	NA	NA	NA
WP_050731225.1|285163_285427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011110891.1|285942_287463_+	Fic family protein	NA	NA	NA	NA	NA
WP_144039585.1|287756_288984_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	76.7	7.6e-117
WP_011110833.1|289299_290343_-|transposase	IS481 family transposase	transposase	A0A0M3LS26	Mannheimia_phage	73.9	1.6e-147
WP_011110894.1|290452_291271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011110895.1|291346_292789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041356354.1|292988_293177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041356959.1|293166_293775_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	47.5	7.2e-36
WP_011110897.1|294018_294411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011110898.1|294412_295210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_143023785.1|295202_295382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011110899.1|295736_296252_+	antirestriction protein ArdA	NA	G9FHQ1	Rhodococcus_virus	38.8	2.9e-17
WP_011110900.1|296384_296678_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_041356961.1|296678_296915_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_041356360.1|297258_297603_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011110903.1|297583_298096_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_011110904.1|298117_298369_+	YdeI/OmpD-associated family protein	NA	NA	NA	NA	NA
WP_011110905.1|298391_298871_+	VOC family protein	NA	NA	NA	NA	NA
WP_011110906.1|298949_299336_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_011110833.1|299642_300686_-|transposase	IS481 family transposase	transposase	A0A0M3LS26	Mannheimia_phage	73.9	1.6e-147
WP_041356365.1|300821_302126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011110907.1|302131_302503_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
WP_011110910.1|303852_304488_-	cytochrome c	NA	NA	NA	NA	NA
WP_011110911.1|304594_305197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011110912.1|305310_306129_+	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_011110913.1|306196_306922_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_041356963.1|306947_307571_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	A0A2H4UUV7	Bodo_saltans_virus	27.9	1.8e-05
WP_011110915.1|307607_308807_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_011110916.1|308978_310820_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_011110917.1|310816_311620_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_011110918.1|311655_312597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041356966.1|312609_313182_-	LemA family protein	NA	NA	NA	NA	NA
WP_011110920.1|313306_313981_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_011110921.1|314009_314816_-	thiazole synthase	NA	NA	NA	NA	NA
WP_011110922.1|314890_315091_-	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
WP_011110923.1|315292_315781_+	MEKHLA domain-containing protein	NA	NA	NA	NA	NA
WP_011110924.1|315849_316254_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_011110925.1|316356_317307_+|transposase	IS481-like element ISNe2 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NC_004757	Nitrosomonas europaea ATCC 19718, complete genome	2812094	1331998	1404753	2812094	transposase,protease	Burkholderia_virus(15.38%)	59	NA	NA
WP_173251297.1|1331998_1333018_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	S5VY82	Leptospira_phage	25.4	7.7e-06
WP_011111810.1|1333143_1333407_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011111811.1|1333387_1333861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158297463.1|1333948_1334695_-	DUF2807 domain-containing protein	NA	NA	NA	NA	NA
WP_011111813.1|1335221_1335800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011111814.1|1336036_1337293_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_143023722.1|1337348_1338453_-	peptide chain release factor 2	NA	G0YKC3	Acinetobacter_phage	46.4	1.9e-05
WP_041357152.1|1338492_1339620_-	DUF1207 domain-containing protein	NA	NA	NA	NA	NA
WP_011111817.1|1339777_1340584_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_041357153.1|1340848_1342057_-	catalase family protein	NA	NA	NA	NA	NA
WP_011111819.1|1342059_1343586_-	peroxidase	NA	NA	NA	NA	NA
WP_011111820.1|1343600_1344905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011111821.1|1344938_1345394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011111822.1|1345777_1348447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_173251266.1|1348549_1350496_+	GMC family oxidoreductase N-terminal domain-containing protein	NA	A0A2K9L353	Tupanvirus	27.7	2.0e-50
WP_011111824.1|1350583_1353445_-	oxygenase	NA	NA	NA	NA	NA
WP_143023721.1|1353500_1355168_-	lipoxygenase	NA	NA	NA	NA	NA
WP_011111826.1|1355233_1356835_-	cyclooxygenase	NA	G8XT72	Simian_cytomegalovirus	30.3	1.0e-57
WP_011111827.1|1357005_1358508_-	tyrosinase family protein	NA	NA	NA	NA	NA
WP_011111828.1|1358540_1358756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041356718.1|1358752_1359298_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041357155.1|1359353_1360112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011111831.1|1360293_1361001_-	Kazal domain-containing protein	NA	NA	NA	NA	NA
WP_011111833.1|1361519_1362878_-	lysine 2,3-aminomutase	NA	NA	NA	NA	NA
WP_078737663.1|1363772_1363928_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_011111835.1|1363929_1369071_-	Hpt domain-containing protein	NA	W8CYM9	Bacillus_phage	28.9	1.8e-10
WP_011111836.1|1369144_1371205_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.9	6.7e-17
WP_011111837.1|1371535_1372180_-	type II secretion system protein	NA	NA	NA	NA	NA
WP_011111838.1|1372182_1372563_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_041356725.1|1372567_1373011_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_143023724.1|1372970_1373336_-	type II secretion system major pseudopilin GspG	NA	NA	NA	NA	NA
WP_011111841.1|1373420_1374641_-	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_011111842.1|1374637_1376368_-	type II/IV secretion system protein	NA	NA	NA	NA	NA
WP_041356728.1|1376711_1376933_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_041356729.1|1377205_1377547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086935148.1|1377547_1378027_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_011111844.1|1378674_1379310_-	DUF416 family protein	NA	NA	NA	NA	NA
WP_144039590.1|1379497_1380725_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	76.7	9.9e-117
WP_011111846.1|1382229_1383717_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	39.8	6.4e-78
WP_011110809.1|1383967_1385011_-|transposase	IS481 family transposase	transposase	A0A0M3LS26	Mannheimia_phage	73.6	6.0e-147
WP_050731253.1|1385101_1385485_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_011111847.1|1385549_1386059_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011111848.1|1386111_1386501_-	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A1X9I6C0	Streptococcus_phage	35.2	2.0e-10
WP_041356731.1|1386497_1386725_-	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_011111849.1|1387551_1387758_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_050731254.1|1387892_1388564_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_144039590.1|1388562_1389790_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	76.7	9.9e-117
WP_143023676.1|1389808_1390222_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA	NA
WP_011111851.1|1390388_1391570_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011111852.1|1391627_1392515_+	cytochrome c	NA	NA	NA	NA	NA
WP_011111853.1|1392594_1393296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011111854.1|1393781_1394186_+	DoxX family protein	NA	NA	NA	NA	NA
WP_041357159.1|1397398_1399756_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	40.2	1.9e-148
WP_041357160.1|1399930_1400224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011111858.1|1400382_1400709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011111859.1|1400772_1402071_-	adenylosuccinate synthase	NA	A0A2R8FF47	Brazilian_cedratvirus	36.0	3.6e-69
WP_011111860.1|1402304_1403480_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_041357161.1|1403555_1403741_-	DUF2065 domain-containing protein	NA	NA	NA	NA	NA
WP_011111862.1|1403874_1404753_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 4
NC_004757	Nitrosomonas europaea ATCC 19718, complete genome	2812094	1653401	1715700	2812094	transposase	Paenibacillus_phage(37.5%)	60	NA	NA
WP_144039591.1|1653401_1654164_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	43.2	1.0e-23
WP_011110833.1|1654580_1655624_+|transposase	IS481 family transposase	transposase	A0A0M3LS26	Mannheimia_phage	73.9	1.6e-147
WP_041357187.1|1655891_1656143_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_011112092.1|1656578_1656917_+	MliC family protein	NA	NA	NA	NA	NA
WP_011112093.1|1656956_1658159_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_143023750.1|1658228_1660742_-	3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_143023751.1|1661066_1661561_-	redoxin domain-containing protein	NA	NA	NA	NA	NA
WP_011112096.1|1661560_1662799_-	exo-alpha-sialidase	NA	NA	NA	NA	NA
WP_011112097.1|1662876_1665003_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_011112098.1|1665233_1667357_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_011112099.1|1667658_1668963_-	M18 family aminopeptidase	NA	NA	NA	NA	NA
WP_041356778.1|1669481_1669760_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_011112102.1|1669972_1672525_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_011112103.1|1672633_1673875_-	exo-alpha-sialidase	NA	NA	NA	NA	NA
WP_011112104.1|1674095_1675415_+	DUF2325 domain-containing protein	NA	NA	NA	NA	NA
WP_011112105.1|1675494_1677216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011112106.1|1677348_1679442_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_011112107.1|1679561_1679759_+	hemin uptake protein HemP	NA	NA	NA	NA	NA
WP_011112108.1|1679911_1680655_+	DUF2325 domain-containing protein	NA	NA	NA	NA	NA
WP_011112109.1|1680756_1681752_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA	NA
WP_011112110.1|1681761_1682679_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011112111.1|1682809_1683676_+	pirin family protein	NA	NA	NA	NA	NA
WP_041356779.1|1683705_1684086_+	DoxX family protein	NA	NA	NA	NA	NA
WP_041356780.1|1684166_1684397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011112114.1|1684528_1686862_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_011112115.1|1686858_1688697_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	25.4	1.9e-42
WP_143023749.1|1688903_1689293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011112117.1|1689297_1689594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_144039592.1|1690372_1691136_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	44.1	9.4e-25
WP_143023767.1|1691221_1691524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143023768.1|1691602_1692085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011112120.1|1692107_1692632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011112121.1|1692645_1693005_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_074671328.1|1693039_1693480_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011112123.1|1693556_1693973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011112124.1|1694060_1694564_+	DNA-deoxyinosine glycosylase	NA	NA	NA	NA	NA
WP_011112125.1|1694662_1694980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011112126.1|1695136_1695388_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA	NA
WP_011112127.1|1695377_1695668_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	54.7	4.1e-21
WP_011112128.1|1695724_1696417_+	ATPase	NA	NA	NA	NA	NA
WP_011112129.1|1696711_1698025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143023771.1|1698143_1699199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011112131.1|1699291_1700128_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_041357193.1|1700124_1701111_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_011112133.1|1701122_1701839_-	acylneuraminate cytidylyltransferase family protein	NA	NA	NA	NA	NA
WP_011112134.1|1702242_1704492_+	N-acetylneuraminate synthase family protein	NA	NA	NA	NA	NA
WP_011112135.1|1704665_1706081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011112136.1|1706214_1706961_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_011112137.1|1706971_1707355_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_011112138.1|1707700_1709830_+	S8 family serine peptidase	NA	A0A1B0T6A2	Bacillus_phage	43.4	6.7e-44
WP_143023769.1|1709960_1710614_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA	NA
WP_011112141.1|1711066_1711363_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_041356785.1|1711359_1711629_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_011112143.1|1712012_1712351_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_011112144.1|1712335_1712578_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_011112145.1|1712784_1713213_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_011112146.1|1713209_1713464_-	plasmid stabilization protein	NA	NA	NA	NA	NA
WP_011112147.1|1714057_1714306_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_011112148.1|1714295_1714592_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	52.1	5.6e-18
WP_144039593.1|1714951_1715700_-|transposase	IS5-like element ISNeu3 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	42.6	9.3e-25
>prophage 5
NC_004757	Nitrosomonas europaea ATCC 19718, complete genome	2812094	1808308	1873609	2812094	tRNA,transposase,protease	Bacillus_virus(13.33%)	64	NA	NA
WP_011112230.1|1808308_1809121_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_011112231.1|1809122_1809521_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_011110833.1|1809712_1810756_+|transposase	IS481 family transposase	transposase	A0A0M3LS26	Mannheimia_phage	73.9	1.6e-147
WP_086935135.1|1810896_1811253_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_143023777.1|1811191_1811965_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_011112232.1|1811990_1812338_-	arsenate reductase family protein	NA	NA	NA	NA	NA
WP_011112233.1|1812347_1812866_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011112234.1|1812937_1813195_-	DUF2024 family protein	NA	NA	NA	NA	NA
WP_011112235.1|1813253_1813916_-	O-methyltransferase	NA	NA	NA	NA	NA
WP_050731308.1|1813946_1815125_-	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_041356799.1|1816097_1817393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011112240.1|1817577_1818336_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_011112241.1|1818355_1819117_+	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase	NA	NA	NA	NA	NA
WP_011112242.1|1819113_1820049_+	phosphoglycerate dehydrogenase	NA	A0A2R8FDS8	Brazilian_cedratvirus	34.5	1.0e-33
WP_011112243.1|1820041_1820986_+	NAD(P)-dependent oxidoreductase	NA	A0A1D8KNX5	Synechococcus_phage	25.4	3.8e-07
WP_011112244.1|1820982_1821639_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_011112245.1|1821620_1822307_+	6-phosphogluconolactonase	NA	NA	NA	NA	NA
WP_011112246.1|1822331_1822694_+	DMT family protein	NA	NA	NA	NA	NA
WP_011112247.1|1822741_1823395_-	DUF4126 domain-containing protein	NA	NA	NA	NA	NA
WP_011112248.1|1823455_1824463_-	glucokinase	NA	NA	NA	NA	NA
WP_011112249.1|1824727_1825654_+	serine acetyltransferase	NA	NA	NA	NA	NA
WP_143023778.1|1825746_1826922_+	NnrS family protein	NA	NA	NA	NA	NA
WP_011112251.1|1826918_1828187_-	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA	NA	NA	NA	NA
WP_011112252.1|1828412_1829384_-|transposase	IS1595-like element ISNe7 family transposase	transposase	NA	NA	NA	NA
WP_011112253.1|1829478_1830753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011112254.1|1830927_1834314_-	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	37.9	1.6e-23
WP_011112255.1|1834590_1835928_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_011112256.1|1836013_1837441_-	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA	NA
WP_011112257.1|1838131_1838443_-	DUF190 domain-containing protein	NA	A0A2H4J2R0	uncultured_Caudovirales_phage	49.0	2.1e-23
WP_011112258.1|1838453_1838837_-	fluoride efflux transporter CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	66.3	4.3e-34
WP_011112259.1|1839273_1841895_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	5.3e-27
WP_011112260.1|1841898_1842378_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_011112261.1|1842392_1843046_-	ribonuclease HII	NA	D2TEQ2	Emiliania_huxleyi_virus	41.4	1.5e-26
WP_011112262.1|1843067_1843529_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_011112263.1|1843545_1844109_-	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_011112264.1|1844135_1846412_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_011112265.1|1846414_1847782_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_011112266.1|1847808_1849050_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_011112267.1|1849046_1849874_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_011112268.1|1849912_1850704_-	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	34.8	2.3e-18
WP_011112269.1|1850707_1851265_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_011112270.1|1851370_1852084_-	UMP kinase	NA	NA	NA	NA	NA
WP_011112271.1|1852238_1853123_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_011112272.1|1853197_1853953_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_041357219.1|1854178_1854907_-	fumarate/nitrate reduction transcriptional regulator Fnr	NA	NA	NA	NA	NA
WP_041357220.1|1854989_1855304_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_143023730.1|1855499_1857620_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_011112276.1|1857894_1858320_-	transcriptional repressor	NA	NA	NA	NA	NA
WP_041356800.1|1858605_1858797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011112277.1|1858965_1860204_-	NnrS family protein	NA	NA	NA	NA	NA
WP_173251299.1|1860324_1861242_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_011112279.1|1861299_1861932_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_011112280.1|1861924_1862590_+|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_011112281.1|1862662_1863865_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_011112282.1|1863904_1864705_+	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_011112283.1|1864670_1865333_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	36.3	1.2e-23
WP_011112284.1|1865345_1866593_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	46.3	5.5e-06
WP_011112285.1|1866713_1866917_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	80.3	2.0e-22
WP_011112286.1|1867289_1867601_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	41.0	5.9e-10
WP_011112287.1|1867602_1869873_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	43.2	6.2e-173
WP_011112288.1|1869891_1870575_+	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_011112289.1|1870870_1871947_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011112290.1|1871951_1872788_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_041357224.1|1872793_1873609_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	1.8e-34
>prophage 6
NC_004757	Nitrosomonas europaea ATCC 19718, complete genome	2812094	2376657	2428041	2812094	tRNA,protease,transposase,integrase	Mannheimia_phage(14.29%)	50	2374916:2374931	2385702:2385717
2374916:2374931	attL	TGTCAGTTATGCGGAA	NA	NA	NA	NA
WP_011112687.1|2376657_2377629_-|integrase	integron integrase	integrase	A0A1P8DJJ6	Virus_Rctr41k	46.1	1.8e-68
WP_011112688.1|2377769_2378141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011112606.1|2378247_2379561_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.8	2.8e-32
WP_158297474.1|2379644_2379791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011112689.1|2380301_2381669_-	MFS transporter	NA	NA	NA	NA	NA
WP_011112690.1|2381665_2382439_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	28.2	2.8e-24
WP_143023783.1|2382450_2382843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011112692.1|2382989_2383526_-	DUF615 domain-containing protein	NA	NA	NA	NA	NA
WP_011112693.1|2383767_2385135_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_011112694.1|2385210_2386131_+	DMT family transporter	NA	NA	NA	NA	NA
2385702:2385717	attR	TGTCAGTTATGCGGAA	NA	NA	NA	NA
WP_011112695.1|2386219_2388625_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_011112696.1|2388971_2389286_-	multidrug efflux SMR transporter	NA	NA	NA	NA	NA
WP_011112697.1|2389371_2390649_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA	NA
WP_144039593.1|2390792_2391540_+|transposase	IS5-like element ISNeu3 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	42.6	9.3e-25
WP_158297477.1|2391709_2391871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078737683.1|2392162_2392825_+	carbon-nitrogen hydrolase family protein	NA	M1I0W4	Acanthocystis_turfacea_Chlorella_virus	25.9	4.8e-09
WP_011112698.1|2393812_2394607_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_011112699.1|2394657_2396550_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_011112700.1|2396894_2397167_-	HU family DNA-binding protein	NA	A4JWM7	Burkholderia_virus	64.0	1.7e-21
WP_011112701.1|2397379_2398369_-	NAD(P)-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_011112702.1|2398365_2398854_-	SH3 domain-containing protein	NA	NA	NA	NA	NA
WP_011112703.1|2398857_2399343_-	protein-export chaperone SecB	NA	NA	NA	NA	NA
WP_011112704.1|2399417_2399675_-	glutaredoxin 3	NA	V9QKN6	Rhizobium_phage	43.4	3.7e-10
WP_011112705.1|2399706_2400129_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_011112706.1|2400267_2401497_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_011112707.1|2401503_2402397_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_011112708.1|2402398_2403334_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	47.7	7.0e-06
WP_011112709.1|2403362_2404556_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011112710.1|2404724_2406089_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_050731317.1|2406314_2407130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011112712.1|2407543_2408254_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_041356853.1|2408256_2408967_+	arginyltransferase	NA	NA	NA	NA	NA
WP_011112714.1|2408969_2409998_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_011112715.1|2409987_2410644_+	RnfABCDGE type electron transport complex subunit B	NA	NA	NA	NA	NA
WP_011112716.1|2410644_2411316_+	endonuclease III	NA	G3CB03	Aeropyrum_pernix_spindle-shaped_virus	23.4	1.2e-12
WP_011112717.1|2411312_2411708_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_011112718.1|2411697_2412135_+	DUF86 domain-containing protein	NA	NA	NA	NA	NA
WP_011112719.1|2412160_2413066_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_011112720.1|2413307_2414870_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	43.5	2.0e-37
WP_011110833.1|2415224_2416268_-|transposase	IS481 family transposase	transposase	A0A0M3LS26	Mannheimia_phage	73.9	1.6e-147
WP_011112722.1|2417794_2418211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011112723.1|2418224_2418638_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_011110833.1|2418812_2419856_-|transposase	IS481 family transposase	transposase	A0A0M3LS26	Mannheimia_phage	73.9	1.6e-147
WP_078737670.1|2419920_2420262_+	DUF86 domain-containing protein	NA	NA	NA	NA	NA
WP_011112724.1|2420647_2421631_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_011112725.1|2421662_2422778_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_011112726.1|2422774_2424622_-	AMP-binding protein	NA	A0A1V0SBX8	Catovirus	21.8	1.3e-35
WP_011112727.1|2424691_2425762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011112728.1|2425794_2427483_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011112729.1|2427597_2428041_-|transposase	IS200/IS605 family transposase	transposase	A0A1L2BWN1	Bacteriophage	31.9	3.1e-12
>prophage 7
NC_004757	Nitrosomonas europaea ATCC 19718, complete genome	2812094	2624479	2672387	2812094	transposase	Mannheimia_phage(33.33%)	39	NA	NA
WP_011112884.1|2624479_2625472_+|transposase	IS481-like element ISNe2 family transposase	transposase	NA	NA	NA	NA
WP_144039597.1|2625691_2626400_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	42.6	6.7e-25
WP_011110809.1|2626457_2627501_-|transposase	IS481 family transposase	transposase	A0A0M3LS26	Mannheimia_phage	73.6	6.0e-147
WP_074671296.1|2627720_2628320_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_050731285.1|2628458_2630789_-	5-oxoprolinase/urea amidolyase family protein	NA	NA	NA	NA	NA
WP_011112887.1|2630852_2631512_-	urea carboxylase-associated family protein	NA	NA	NA	NA	NA
WP_011112888.1|2631508_2632237_-	urea carboxylase-associated family protein	NA	NA	NA	NA	NA
WP_011112889.1|2632314_2633832_-	amino acid permease	NA	NA	NA	NA	NA
WP_158297478.1|2633880_2634018_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011112890.1|2634782_2638418_+	urea carboxylase	NA	NA	NA	NA	NA
WP_011112891.1|2638405_2639791_-	transglycosylase SLT domain-containing protein	NA	A0A172JIA8	Bacillus_phage	28.8	1.2e-06
WP_011112892.1|2639940_2641089_-	ribonucleotide-diphosphate reductase subunit beta	NA	E5ER80	Bathycoccus_sp._RCC1105_virus	28.0	9.2e-32
WP_011112893.1|2641129_2643997_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	44.9	2.0e-176
WP_041356874.1|2648207_2648636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_143779498.1|2648681_2649338_-	class I SAM-dependent methyltransferase	NA	A0A219VHB4	Ochrobactrum_phage	54.3	7.0e-61
WP_041356875.1|2649444_2649816_-	DUF393 domain-containing protein	NA	NA	NA	NA	NA
WP_011112897.1|2649962_2650370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011112899.1|2651287_2651668_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_041356877.1|2651671_2651878_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_041356878.1|2652017_2652233_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_050731320.1|2652448_2652631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011112900.1|2652659_2653850_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_011112901.1|2653860_2656332_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_011112902.1|2656459_2657476_-	FecR family protein	NA	NA	NA	NA	NA
WP_011112903.1|2657489_2658047_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_011112904.1|2658577_2659252_-	EcsC family protein	NA	NA	NA	NA	NA
WP_086935153.1|2659661_2661200_+	glucans biosynthesis protein MdoG	NA	NA	NA	NA	NA
WP_011112906.1|2661192_2663796_+	glucans biosynthesis glucosyltransferase MdoH	NA	NA	NA	NA	NA
WP_078737675.1|2664549_2664831_+	CsbD family protein	NA	NA	NA	NA	NA
WP_011112908.1|2665306_2665621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011112909.1|2665657_2665999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011110833.1|2666242_2667286_-|transposase	IS481 family transposase	transposase	A0A0M3LS26	Mannheimia_phage	73.9	1.6e-147
WP_011112910.1|2667488_2667941_-	DUF3465 domain-containing protein	NA	NA	NA	NA	NA
WP_143023798.1|2668022_2668412_-	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_011110833.1|2669024_2670068_+|transposase	IS481 family transposase	transposase	A0A0M3LS26	Mannheimia_phage	73.9	1.6e-147
WP_158297479.1|2670124_2670277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041356882.1|2670347_2670797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041356883.1|2671288_2671576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144039593.1|2671638_2672387_-|transposase	IS5-like element ISNeu3 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	42.6	9.3e-25
