assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000009145.1_ASM914v1	NC_004757	Nitrosomonas europaea ATCC 19718, complete genome	1	139594-140263	1,1,1	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10	cas3,DEDDh,cas2,cas1,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csa3,DinG,RT,PD-DExK,WYL	Type III-D,Type III-C,Type III-B,Type III-A	GTCTCAATCCCTTTGAAATCAGGGCATCGGTGTTTC,GTCTCAATCCCTTTGAAATCAGGGCATCGGTGTTTC,GTCTCAATCCCTTTGAAATCAGGGCATCGGTGTTTC	36,36,36	0	0	NA	NA	NA:NA:NA	9,8,8	9	TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-A	cas3,DEDDh,cas2,cas1,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csa3,DinG,RT,PD-DExK,WYL	NA|148aa|up_0|NC_004757.1_138990_139434_-,NA|53aa|down_4|NC_004757.1_143420_143579_-	NA|425aa|up_9|NC_004757.1_128124_129399_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|323aa|up_8|NC_004757.1_129565_130534_-	PRK06487, PRK06487, 2-hydroxyacid dehydrogenase	NA|104aa|up_7|NC_004757.1_130749_131061_-	COG4654, COG4654, Cytochrome c551/c552 [Energy production and conversion]	NA|690aa|up_6|NC_004757.1_131084_133154_-	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|558aa|up_5|NC_004757.1_133175_134849_-	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|279aa|up_4|NC_004757.1_134975_135812_+	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed	NA|385aa|up_3|NC_004757.1_135837_136992_+	pfam02405, MlaE, Permease MlaE	NA|260aa|up_2|NC_004757.1_136991_137771_+	cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents	NA|377aa|up_1|NC_004757.1_137821_138952_+	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed	NA|148aa|up_0|NC_004757.1_138990_139434_-	NA	cas2|106aa|down_0|NC_004757.1_140381_140699_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas1|328aa|down_1|NC_004757.1_140732_141716_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|114aa|down_2|NC_004757.1_141737_142079_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	csx1|375aa|down_3|NC_004757.1_142113_143238_-	TIGR02584, hypothetical_protein_NE0113, CRISPR-associated protein, NE0113 family	NA|53aa|down_4|NC_004757.1_143420_143579_-	NA	csx1|389aa|down_5|NC_004757.1_143735_144902_-	TIGR02221, CRISPR-associated_protein_Csx1_2, CRISPR-associated protein, TM1812 family	csx16|99aa|down_6|NC_004757.1_144898_145195_-	TIGR02620, hypothetical_protein, putative CRISPR-associated protein, VVA1548 family	cas6|319aa|down_7|NC_004757.1_145191_146148_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	NA|88aa|down_8|NC_004757.1_146125_146389_-	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	csm5gr7|581aa|down_9|NC_004757.1_146416_148159_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5
GCF_000009145.1_ASM914v1	NC_004757	Nitrosomonas europaea ATCC 19718, complete genome	2	921023-921636	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas2	cas3,DEDDh,cas2,cas1,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csa3,DinG,RT,PD-DExK,WYL	Unclear	GTAGCGCCCGGTCACCAGACCGGGCGAGGATTGAAAC,GTAGCGCCCGGTCACCAGACCGGGCGAGGATTGAAAC,GTAGCGCCCGGTCACCAGACCGGGCGAGGATTGAAAC	37,37,37	0	0	NA	NA	I-C,III-B:I-C,III-B:I-C,III-B	8,8,8	8	Unclear	cas3,DEDDh,cas2,cas1,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csa3,DinG,RT,PD-DExK,WYL	NA,NA	NA|187aa|up_9|NC_004757.1_914347_914908_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|329aa|up_8|NC_004757.1_915037_916024_-	cd01948, EAL, EAL domain	NA|79aa|up_7|NC_004757.1_916020_916257_-	PRK13747, PRK13747, putative mercury resistance protein; Provisional	NA|122aa|up_6|NC_004757.1_916253_916619_-	PRK13749, PRK13749, HTH-type transcriptional regulator MerD	NA|562aa|up_5|NC_004757.1_916636_918322_-	PRK13748, PRK13748, putative mercuric reductase; Provisional	NA|141aa|up_4|NC_004757.1_918360_918783_-	PRK13755, PRK13755, organomercurial transporter MerC	NA|92aa|up_3|NC_004757.1_918811_919087_-	TIGR02052, periplasmic_mercuric_ion_binding_protein, mercuric transport protein periplasmic component	NA|117aa|up_2|NC_004757.1_919100_919451_-	PRK13751, PRK13751, putative mercuric transport protein; Provisional	NA|142aa|up_1|NC_004757.1_919522_919948_+	PRK13752, PRK13752, mercuric resistance operon transcriptional regulator MerR	cas2|97aa|up_0|NC_004757.1_920551_920842_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|195aa|down_0|NC_004757.1_921638_922223_-	pfam08378, NERD, Nuclease-related domain	NA|317aa|down_1|NC_004757.1_922350_923301_-	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands	NA|151aa|down_2|NC_004757.1_923420_923873_-	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]	NA|231aa|down_3|NC_004757.1_923928_924621_-	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family	NA|225aa|down_4|NC_004757.1_924636_925311_-	pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase	NA|371aa|down_5|NC_004757.1_925389_926502_+	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|574aa|down_6|NC_004757.1_926614_928336_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|611aa|down_7|NC_004757.1_928344_930177_-	TIGR01931, Sulfite_reductase_flavoprotein_alpha-component, sulfite reductase [NADPH] flavoprotein, alpha-component	NA|319aa|down_8|NC_004757.1_930707_931664_-	PRK12684, PRK12684, CysB family HTH-type transcriptional regulator	NA|233aa|down_9|NC_004757.1_931896_932595_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000009145.1_ASM914v1	NC_004757	Nitrosomonas europaea ATCC 19718, complete genome	3	1127490-1127597	3	CRISPRCasFinder	no		cas3,DEDDh,cas2,cas1,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csa3,DinG,RT,PD-DExK,WYL	Orphan	CATGAGACGATTCAGCTGCTTTGCCCTTGATTGCGAC	37	1	1	1127527-1127560	NC_004757.1_2243679-2243712	NA	1	1	Orphan	cas3,DEDDh,cas2,cas1,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csa3,DinG,RT,PD-DExK,WYL	NA,NA	NA|292aa|up_9|NC_004757.1_1114708_1115584_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|149aa|up_8|NC_004757.1_1115621_1116068_+	pfam00582, Usp, Universal stress protein family	NA|344aa|up_7|NC_004757.1_1116257_1117289_+	cd13542, PBP2_FutA1_ilke, Substrate binding domain of ferric iron-binding protein, a member of the type 2 periplasmic binding fold superfamily	NA|534aa|up_6|NC_004757.1_1117382_1118984_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_5|NC_004757.1_1118991_1120062_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|107aa|up_4|NC_004757.1_1120084_1120405_+	PRK02877, PRK02877, hypothetical protein; Provisional	NA|353aa|up_3|NC_004757.1_1120427_1121486_-	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B	NA|109aa|up_2|NC_004757.1_1122054_1122381_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|420aa|up_1|NC_004757.1_1122603_1123863_+	PRK09376, rho, transcription termination factor Rho; Provisional	NA|75aa|up_0|NC_004757.1_1124142_1124367_+	pfam01197, Ribosomal_L31, Ribosomal protein L31	NA|94aa|down_0|NC_004757.1_1129515_1129797_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|429aa|down_1|NC_004757.1_1129793_1131080_-	PRK00077, eno, enolase; Provisional	NA|565aa|down_2|NC_004757.1_1131520_1133215_-	PRK05380, pyrG, CTP synthetase; Validated	NA|131aa|down_3|NC_004757.1_1133398_1133791_+	TIGR02970, Succinate_dehydrogenase_cytochrome_b556_subunit, succinate dehydrogenase, cytochrome b556 subunit	NA|118aa|down_4|NC_004757.1_1133784_1134138_+	cd03494, SQR_TypeC_SdhD, Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol	NA|588aa|down_5|NC_004757.1_1134139_1135903_+	PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|325aa|down_6|NC_004757.1_1135984_1136959_+	sd00045, ANK, ankyrin repeats	NA|768aa|down_7|NC_004757.1_1137181_1139485_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|207aa|down_8|NC_004757.1_1139544_1140165_+	pfam03548, LolA, Outer membrane lipoprotein carrier protein LolA	NA|440aa|down_9|NC_004757.1_1140157_1141477_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed
