assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000009445.1_ASM944v1	NC_008769	Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2, complete genome	1	361675-362472	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|398aa|up_9|NC_008769.1_351368_352562_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NC_008769.1_352597_354280_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NC_008769.1_354296_356492_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NC_008769.1_356605_357739_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NC_008769.1_357735_358356_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NC_008769.1_358452_359034_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NC_008769.1_358963_359689_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NC_008769.1_359778_360699_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NC_008769.1_360738_361167_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|86aa|up_0|NC_008769.1_361190_361448_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|900aa|down_0|NC_008769.1_364546_367246_-	pfam00934, PE, PE family	NA|835aa|down_1|NC_008769.1_367495_370000_-	pfam00934, PE, PE family	NA|537aa|down_2|NC_008769.1_370290_371901_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_3|NC_008769.1_371924_372833_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_4|NC_008769.1_373057_374953_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_5|NC_008769.1_374949_376566_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_6|NC_008769.1_376562_380555_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_7|NC_008769.1_380551_380860_+	pfam00934, PE, PE family	NA|514aa|down_8|NC_008769.1_380862_382404_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_9|NC_008769.1_382452_382746_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_000009445.1_ASM944v1	NC_008769	Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2, complete genome	2	369031-369253	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|732aa|up_9|NC_008769.1_354296_356492_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_8|NC_008769.1_356605_357739_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_7|NC_008769.1_357735_358356_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_6|NC_008769.1_358452_359034_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_5|NC_008769.1_358963_359689_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_4|NC_008769.1_359778_360699_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_3|NC_008769.1_360738_361167_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|86aa|up_2|NC_008769.1_361190_361448_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|917aa|up_1|NC_008769.1_361532_364283_-	pfam00934, PE, PE family	NA|900aa|up_0|NC_008769.1_364546_367246_-	pfam00934, PE, PE family	NA|537aa|down_0|NC_008769.1_370290_371901_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NC_008769.1_371924_372833_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NC_008769.1_373057_374953_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NC_008769.1_374949_376566_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NC_008769.1_376562_380555_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NC_008769.1_380551_380860_+	pfam00934, PE, PE family	NA|514aa|down_6|NC_008769.1_380862_382404_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NC_008769.1_382452_382746_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NC_008769.1_382775_383066_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NC_008769.1_383076_383964_+	pfam14011, ESX-1_EspG, EspG family
GCF_000009445.1_ASM944v1	NC_008769	Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2, complete genome	3	722910-722986	1	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NC_008769.1_708803_709211_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NC_008769.1_709270_709957_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NC_008769.1_710110_712744_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NC_008769.1_712766_715154_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NC_008769.1_715291_716014_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NC_008769.1_716010_716808_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NC_008769.1_716809_717697_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NC_008769.1_717702_718917_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_1|NC_008769.1_718913_719945_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|up_0|NC_008769.1_719941_721387_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NC_008769.1_724121_725672_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NC_008769.1_725723_726116_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NC_008769.1_726112_726370_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NC_008769.1_726552_727788_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NC_008769.1_728038_728452_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NC_008769.1_728448_728685_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NC_008769.1_728788_729295_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NC_008769.1_729408_729879_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NC_008769.1_729922_730684_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NC_008769.1_730740_731052_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000009445.1_ASM944v1	NC_008769	Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2, complete genome	4	957042-957953	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGGGCCGGCGG	21	1	23	957909-957935|957909-957935|957909-957935|957909-957935|957909-957935|957909-957935|957909-957935|957909-957935|957909-957935|957909-957935|957909-957935|957909-957935|957909-957935|957909-957935|957909-957935|957909-957935|957909-957935|957909-957935|957909-957935|957909-957935|957909-957935|957909-957935|957909-957935	NC_008769.1_864969-864995|NC_008769.1_361647-361621|NC_008769.1_364661-364635|NC_008769.1_367607-367581|NC_008769.1_871220-871246|NC_008769.1_872498-872524|NC_008769.1_956775-956801|NC_008769.1_2403698-2403672|NC_008769.1_362883-362857|NC_008769.1_365612-365586|NC_008769.1_365951-365925|NC_008769.1_368726-368700|NC_008769.1_706010-705984|NC_008769.1_868341-868367|NC_008769.1_869439-869465|NC_008769.1_956676-956702|NC_008769.1_1245174-1245200|NC_008769.1_1680789-1680763|NC_008769.1_1869993-1869967|NC_008769.1_2062384-2062358|NC_008769.1_3789968-3789994|NC_008769.1_3920427-3920453|NC_008769.1_3920583-3920609	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NC_008769.1_962071_962623_-,NA|81aa|down_8|NC_008769.1_968098_968341_+	NA|685aa|up_9|NC_008769.1_944677_946732_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NC_008769.1_946897_948067_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NC_008769.1_948154_949171_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NC_008769.1_949332_949974_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NC_008769.1_950054_951110_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NC_008769.1_951161_951554_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NC_008769.1_951611_952034_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NC_008769.1_951995_952286_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NC_008769.1_952390_953296_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NC_008769.1_953314_954130_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NC_008769.1_958330_960979_-	pfam00934, PE, PE family	NA|215aa|down_1|NC_008769.1_961446_962091_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NC_008769.1_962071_962623_-	NA	NA|241aa|down_3|NC_008769.1_962703_963426_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NC_008769.1_963496_964525_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|261aa|down_5|NC_008769.1_965213_965996_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NC_008769.1_966082_966895_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NC_008769.1_966962_967823_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NC_008769.1_968098_968341_+	NA	NA|431aa|down_9|NC_008769.1_968617_969910_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_000009445.1_ASM944v1	NC_008769	Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2, complete genome	5	1243249-1244105	2	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	78	1243632-1243653|1243632-1243653|1243677-1243692|1243815-1243836|1243815-1243836|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950|1243932-1243950	NC_008769.1_2925002-2924981|NC_008769.1_2925068-2925047|NC_008769.1_2089574-2089559|NC_008769.1_868803-868824|NC_008769.1_1249069-1249090|NC_008769.1_365048-365030|NC_008769.1_705674-705656|NC_008769.1_871052-871070|NC_008769.1_1249042-1249060|NC_008769.1_1249114-1249132|NC_008769.1_1655510-1655492|NC_008769.1_1658336-1658318|NC_008769.1_1661194-1661176|NC_008769.1_1661956-1661938|NC_008769.1_2001300-2001282|NC_008769.1_2062558-2062540|NC_008769.1_2063104-2063086|NC_008769.1_2765913-2765895|NC_008769.1_2769430-2769412|NC_008769.1_3912556-3912574|NC_008769.1_179900-179918|NC_008769.1_363039-363021|NC_008769.1_366155-366137|NC_008769.1_366608-366590|NC_008769.1_366659-366641|NC_008769.1_366668-366650|NC_008769.1_368939-368921|NC_008769.1_369326-369308|NC_008769.1_369355-369373|NC_008769.1_369449-369431|NC_008769.1_394026-394008|NC_008769.1_474240-474222|NC_008769.1_577584-577566|NC_008769.1_654874-654892|NC_008769.1_655096-655114|NC_008769.1_704840-704822|NC_008769.1_872000-872018|NC_008769.1_1121458-1121476|NC_008769.1_1122106-1122124|NC_008769.1_1126176-1126158|NC_008769.1_1244304-1244322|NC_008769.1_1244811-1244829|NC_008769.1_1245063-1245081|NC_008769.1_1245081-1245099|NC_008769.1_1249462-1249480|NC_008769.1_1515724-1515706|NC_008769.1_1643470-1643452|NC_008769.1_1643923-1643905|NC_008769.1_1661059-1661041|NC_008769.1_1661068-1661050|NC_008769.1_1661281-1661263|NC_008769.1_1869570-1869552|NC_008769.1_1870098-1870080|NC_008769.1_2000574-2000556|NC_008769.1_2089772-2089754|NC_008769.1_2287163-2287145|NC_008769.1_2338418-2338400|NC_008769.1_2399628-2399646|NC_008769.1_2403611-2403593|NC_008769.1_2546294-2546276|NC_008769.1_2658571-2658589|NC_008769.1_2759229-2759211|NC_008769.1_2759811-2759793|NC_008769.1_3008278-3008296|NC_008769.1_3008377-3008395|NC_008769.1_3694085-3694103|NC_008769.1_3725220-3725202|NC_008769.1_3725844-3725826|NC_008769.1_3726087-3726069|NC_008769.1_3726219-3726201|NC_008769.1_3728124-3728106|NC_008769.1_3788549-3788567|NC_008769.1_3788732-3788750|NC_008769.1_3909989-3910007|NC_008769.1_3911728-3911746|NC_008769.1_3912382-3912400|NC_008769.1_3920805-3920823|NC_008769.1_4010622-4010604	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NC_008769.1_1238681_1238948_+,NA|61aa|down_3|NC_008769.1_1246649_1246832_+	NA|465aa|up_9|NC_008769.1_1233015_1234410_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NC_008769.1_1234611_1235334_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NC_008769.1_1235365_1236532_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NC_008769.1_1236602_1237097_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NC_008769.1_1237282_1237717_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NC_008769.1_1237818_1238685_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NC_008769.1_1238681_1238948_+	NA	NA|674aa|up_2|NC_008769.1_1238934_1240956_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NC_008769.1_1241054_1241783_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NC_008769.1_1241893_1242682_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NC_008769.1_1245464_1245785_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NC_008769.1_1245937_1246372_+	pfam00934, PE, PE family	NA|55aa|down_2|NC_008769.1_1246473_1246638_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NC_008769.1_1246649_1246832_+	NA	NA|152aa|down_4|NC_008769.1_1247023_1247479_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|851aa|down_5|NC_008769.1_1247893_1250446_+	pfam00934, PE, PE family	NA|313aa|down_6|NC_008769.1_1250663_1251602_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_7|NC_008769.1_1251989_1253270_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_8|NC_008769.1_1253374_1254202_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|434aa|down_9|NC_008769.1_1254412_1255714_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]
GCF_000009445.1_ASM944v1	NC_008769	Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2, complete genome	6	2089244-2089498	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2089325-2089342|2089325-2089342|2089415-2089432	NC_008769.1_432006-431989|NC_008769.1_638236-638219|NC_008769.1_3404701-3404684	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NC_008769.1_2088603_2088867_-,NA	NA|165aa|up_9|NC_008769.1_2074953_2075448_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NC_008769.1_2075795_2076473_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NC_008769.1_2076831_2079657_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NC_008769.1_2079883_2080744_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NC_008769.1_2080784_2081651_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NC_008769.1_2081655_2083542_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NC_008769.1_2083557_2085591_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NC_008769.1_2085710_2087936_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NC_008769.1_2088211_2088607_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NC_008769.1_2088603_2088867_-	NA	NA|350aa|down_0|NC_008769.1_2090634_2091684_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NC_008769.1_2091683_2093051_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|480aa|down_2|NC_008769.1_2093224_2094664_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|317aa|down_3|NC_008769.1_2096176_2097127_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_4|NC_008769.1_2097141_2097558_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_5|NC_008769.1_2097835_2098258_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_6|NC_008769.1_2098306_2098609_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_7|NC_008769.1_2098605_2098920_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_8|NC_008769.1_2098919_2100653_+	PRK13206, ureC, urease subunit alpha; Reviewed	NA|212aa|down_9|NC_008769.1_2100652_2101288_+	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]
GCF_000009445.1_ASM944v1	NC_008769	Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2, complete genome	7	2170975-2171100	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	48	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NC_008769.1_2160950_2161358_-,NA|127aa|down_5|NC_008769.1_2178709_2179090_-	NA|216aa|up_9|NC_008769.1_2154264_2154912_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NC_008769.1_2154918_2157141_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NC_008769.1_2157178_2157622_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NC_008769.1_2157735_2158329_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NC_008769.1_2158411_2159017_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NC_008769.1_2159116_2160121_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NC_008769.1_2160220_2160973_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NC_008769.1_2160950_2161358_-	NA	NA|767aa|up_1|NC_008769.1_2161492_2163793_+	PLN02892, PLN02892, isocitrate lyase	NA|1836aa|up_0|NC_008769.1_2163962_2169470_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NC_008769.1_2173220_2173685_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NC_008769.1_2173782_2174646_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NC_008769.1_2174683_2175955_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NC_008769.1_2176226_2177342_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NC_008769.1_2177332_2178673_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NC_008769.1_2178709_2179090_-	NA	NA|621aa|down_6|NC_008769.1_2179246_2181109_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NC_008769.1_2181116_2181596_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NC_008769.1_2181832_2182606_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NC_008769.1_2182609_2183377_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_000009445.1_ASM944v1	NC_008769	Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2, complete genome	8	3072633-3074060	2,4,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-A,Type III-B,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	18,18,19	19	TypeIII-C,TypeIII-A,TypeIII-B,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NC_008769.1_3065912_3066167_-,NA|135aa|up_7|NC_008769.1_3066314_3066719_+,NA|64aa|up_6|NC_008769.1_3066715_3066907_+,NA|86aa|up_4|NC_008769.1_3068493_3068751_+,NA|104aa|up_3|NC_008769.1_3068855_3069167_+,NA|203aa|up_2|NC_008769.1_3069586_3070195_+,NA	NA|92aa|up_9|NC_008769.1_3065461_3065737_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NC_008769.1_3065912_3066167_-	NA	NA|135aa|up_7|NC_008769.1_3066314_3066719_+	NA	NA|64aa|up_6|NC_008769.1_3066715_3066907_+	NA	NA|385aa|up_5|NC_008769.1_3067105_3068260_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NC_008769.1_3068493_3068751_+	NA	NA|104aa|up_3|NC_008769.1_3068855_3069167_+	NA	NA|203aa|up_2|NC_008769.1_3069586_3070195_+	NA	NA|470aa|up_1|NC_008769.1_3070265_3071675_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NC_008769.1_3071671_3072484_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NC_008769.1_3074086_3075348_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NC_008769.1_3077601_3077943_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NC_008769.1_3077943_3078960_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm5gr7|376aa|down_3|NC_008769.1_3080216_3081344_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NC_008769.1_3081340_3082249_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NC_008769.1_3082229_3082940_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NC_008769.1_3082949_3083324_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NC_008769.1_3083320_3085759_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NC_008769.1_3085755_3086478_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NC_008769.1_3086877_3087423_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000009445.1_ASM944v1	NC_008769	Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2, complete genome	9	3075383-3077553	5,5,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-A,Type III-B,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGA	36,36,35	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	29,29,28	29	TypeIII-C,TypeIII-A,TypeIII-B,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NC_008769.1_3065912_3066167_-,NA|135aa|up_8|NC_008769.1_3066314_3066719_+,NA|64aa|up_7|NC_008769.1_3066715_3066907_+,NA|86aa|up_5|NC_008769.1_3068493_3068751_+,NA|104aa|up_4|NC_008769.1_3068855_3069167_+,NA|203aa|up_3|NC_008769.1_3069586_3070195_+,NA	NA|85aa|up_9|NC_008769.1_3065912_3066167_-	NA	NA|135aa|up_8|NC_008769.1_3066314_3066719_+	NA	NA|64aa|up_7|NC_008769.1_3066715_3066907_+	NA	NA|385aa|up_6|NC_008769.1_3067105_3068260_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NC_008769.1_3068493_3068751_+	NA	NA|104aa|up_4|NC_008769.1_3068855_3069167_+	NA	NA|203aa|up_3|NC_008769.1_3069586_3070195_+	NA	NA|470aa|up_2|NC_008769.1_3070265_3071675_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NC_008769.1_3071671_3072484_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NC_008769.1_3074086_3075348_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NC_008769.1_3077601_3077943_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NC_008769.1_3077943_3078960_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm5gr7|376aa|down_2|NC_008769.1_3080216_3081344_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_3|NC_008769.1_3081340_3082249_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_4|NC_008769.1_3082229_3082940_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_5|NC_008769.1_3082949_3083324_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_6|NC_008769.1_3083320_3085759_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_7|NC_008769.1_3085755_3086478_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_8|NC_008769.1_3086877_3087423_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_9|NC_008769.1_3087694_3088579_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]
GCF_000009445.1_ASM944v1	NC_008769	Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2, complete genome	10	3928264-3929008	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCNNCGGCGGNNCCGGCGGNNNCGGCGG	28	3	11	3928292-3928353|3928292-3928353|3928292-3928353|3928382-3928428|3928382-3928428|3928382-3928428|3928457-3928482|3928457-3928482|3928457-3928482|3928457-3928482|3928457-3928482	NC_008769.1_3927296-3927357|NC_008769.1_3927647-3927708|NC_008769.1_3927932-3927993|NC_008769.1_3927035-3927081|NC_008769.1_3927386-3927432|NC_008769.1_3928022-3928068|NC_008769.1_3912484-3912509|NC_008769.1_3927110-3927135|NC_008769.1_3927461-3927486|NC_008769.1_3927746-3927771|NC_008769.1_3928106-3928131	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|1023aa|up_1|NC_008769.1_3922029_3925098_+,NA|280aa|down_2|NC_008769.1_3932323_3933163_+	NA|64aa|up_9|NC_008769.1_3901561_3901753_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_8|NC_008769.1_3901967_3903170_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_7|NC_008769.1_3903194_3904316_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_6|NC_008769.1_3904386_3905895_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1373aa|up_5|NC_008769.1_3906065_3910184_+	pfam00934, PE, PE family	NA|2095aa|up_4|NC_008769.1_3910474_3916759_+	pfam00934, PE, PE family	NA|516aa|up_3|NC_008769.1_3916925_3918473_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_2|NC_008769.1_3918469_3919306_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|1023aa|up_1|NC_008769.1_3922029_3925098_+	NA	NA|219aa|up_0|NC_008769.1_3925226_3925883_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NC_008769.1_3929716_3931363_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NC_008769.1_3931436_3932228_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NC_008769.1_3932323_3933163_+	NA	NA|237aa|down_3|NC_008769.1_3934441_3935152_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_4|NC_008769.1_3935216_3936260_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_5|NC_008769.1_3936412_3937324_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_6|NC_008769.1_3937339_3938404_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_7|NC_008769.1_3938420_3939605_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_8|NC_008769.1_3939646_3940678_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD	NA|175aa|down_9|NC_008769.1_3940691_3941216_-	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
GCF_000009445.1_ASM944v1	NC_008769	Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2, complete genome	11	4067128-4067453	6	CRISPRCasFinder	no	cas3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Unclear	CGCCGGGCTGTTCGGCGACGGCGGC	25	1	38	4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174|4067153-4067174	NC_008769.1_1000248-1000227|NC_008769.1_1869671-1869650|NC_008769.1_2404069-2404048|NC_008769.1_3725219-3725198|NC_008769.1_3926310-3926331|NC_008769.1_364861-364840|NC_008769.1_365047-365026|NC_008769.1_366154-366133|NC_008769.1_366658-366637|NC_008769.1_368752-368731|NC_008769.1_703399-703378|NC_008769.1_704839-704818|NC_008769.1_870900-870921|NC_008769.1_958828-958807|NC_008769.1_999768-999747|NC_008769.1_1121459-1121480|NC_008769.1_1220418-1220397|NC_008769.1_1222943-1222922|NC_008769.1_1515072-1515051|NC_008769.1_1515723-1515702|NC_008769.1_1661955-1661934|NC_008769.1_2000720-2000699|NC_008769.1_2001950-2001929|NC_008769.1_2062911-2062890|NC_008769.1_2768405-2768384|NC_008769.1_3116707-3116728|NC_008769.1_3728123-3728102|NC_008769.1_3766648-3766669|NC_008769.1_3908163-3908184|NC_008769.1_3913679-3913700|NC_008769.1_3914003-3914024|NC_008769.1_3914600-3914621|NC_008769.1_3915224-3915245|NC_008769.1_3915821-3915842|NC_008769.1_3920872-3920893|NC_008769.1_3923311-3923332|NC_008769.1_4010522-4010501|NC_008769.1_4010621-4010600	NA	5	5	Unclear	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|193aa|up_6|NC_008769.1_4060630_4061209_-,NA|52aa|up_1|NC_008769.1_4066041_4066197_-,NA|100aa|down_1|NC_008769.1_4068112_4068412_-,NA|257aa|down_8|NC_008769.1_4074377_4075148_-	NA|402aa|up_9|NC_008769.1_4054536_4055742_-	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|550aa|up_8|NC_008769.1_4055827_4057477_+	cd07302, CHD, cyclase homology domain	NA|935aa|up_7|NC_008769.1_4057473_4060278_-	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|193aa|up_6|NC_008769.1_4060630_4061209_-	NA	NA|68aa|up_5|NC_008769.1_4061348_4061552_-	COG1278, CspC, Cold shock proteins [Transcription]	cas3|772aa|up_4|NC_008769.1_4061801_4064117_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|95aa|up_3|NC_008769.1_4064253_4064538_+	pfam00934, PE, PE family	NA|346aa|up_2|NC_008769.1_4064861_4065899_+	pfam18621, DUF5628, Family of unknown function (DUF5628)	NA|52aa|up_1|NC_008769.1_4066041_4066197_-	NA	NA|105aa|up_0|NC_008769.1_4066652_4066967_+	pfam00934, PE, PE family	NA|126aa|down_0|NC_008769.1_4067772_4068150_-	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|100aa|down_1|NC_008769.1_4068112_4068412_-	NA	NA|69aa|down_2|NC_008769.1_4068435_4068642_-	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|192aa|down_3|NC_008769.1_4068651_4069227_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|267aa|down_4|NC_008769.1_4069250_4070051_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|388aa|down_5|NC_008769.1_4070047_4071211_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|down_6|NC_008769.1_4071207_4072260_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|down_7|NC_008769.1_4072759_4073623_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|down_8|NC_008769.1_4074377_4075148_-	NA	NA|549aa|down_9|NC_008769.1_4075144_4076791_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
GCF_000009445.1_ASM944v1	NC_008769	Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2, complete genome	12	4067530-4067608	7	CRISPRCasFinder	no	cas3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Unclear	CGCCGGGCTGTTCGGCGACGGCGGC	25	0	0	NA	NA	NA	1	1	Unclear	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|193aa|up_6|NC_008769.1_4060630_4061209_-,NA|52aa|up_1|NC_008769.1_4066041_4066197_-,NA|100aa|down_1|NC_008769.1_4068112_4068412_-,NA|257aa|down_8|NC_008769.1_4074377_4075148_-	NA|402aa|up_9|NC_008769.1_4054536_4055742_-	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|550aa|up_8|NC_008769.1_4055827_4057477_+	cd07302, CHD, cyclase homology domain	NA|935aa|up_7|NC_008769.1_4057473_4060278_-	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|193aa|up_6|NC_008769.1_4060630_4061209_-	NA	NA|68aa|up_5|NC_008769.1_4061348_4061552_-	COG1278, CspC, Cold shock proteins [Transcription]	cas3|772aa|up_4|NC_008769.1_4061801_4064117_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|95aa|up_3|NC_008769.1_4064253_4064538_+	pfam00934, PE, PE family	NA|346aa|up_2|NC_008769.1_4064861_4065899_+	pfam18621, DUF5628, Family of unknown function (DUF5628)	NA|52aa|up_1|NC_008769.1_4066041_4066197_-	NA	NA|105aa|up_0|NC_008769.1_4066652_4066967_+	pfam00934, PE, PE family	NA|126aa|down_0|NC_008769.1_4067772_4068150_-	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|100aa|down_1|NC_008769.1_4068112_4068412_-	NA	NA|69aa|down_2|NC_008769.1_4068435_4068642_-	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|192aa|down_3|NC_008769.1_4068651_4069227_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|267aa|down_4|NC_008769.1_4069250_4070051_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|388aa|down_5|NC_008769.1_4070047_4071211_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|down_6|NC_008769.1_4071207_4072260_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|down_7|NC_008769.1_4072759_4073623_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|down_8|NC_008769.1_4074377_4075148_-	NA	NA|549aa|down_9|NC_008769.1_4075144_4076791_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
GCF_000009445.1_ASM944v1	NC_008769	Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2, complete genome	13	4083791-4083879	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NC_008769.1_4074377_4075148_-,NA|233aa|up_0|NC_008769.1_4082895_4083594_-,NA|126aa|down_6|NC_008769.1_4089114_4089492_+	NA|388aa|up_9|NC_008769.1_4070047_4071211_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NC_008769.1_4071207_4072260_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NC_008769.1_4072759_4073623_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NC_008769.1_4074377_4075148_-	NA	NA|549aa|up_5|NC_008769.1_4075144_4076791_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NC_008769.1_4076787_4077651_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NC_008769.1_4077643_4078570_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NC_008769.1_4078571_4080197_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NC_008769.1_4080904_4082860_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NC_008769.1_4082895_4083594_-	NA	NA|173aa|down_0|NC_008769.1_4083939_4084458_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NC_008769.1_4084458_4085442_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NC_008769.1_4085434_4086628_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NC_008769.1_4086633_4087455_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NC_008769.1_4087586_4088270_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NC_008769.1_4088269_4089007_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NC_008769.1_4089114_4089492_+	NA	NA|225aa|down_7|NC_008769.1_4089590_4090265_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NC_008769.1_4090370_4091165_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NC_008769.1_4091171_4091627_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
