The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_002678	Mesorhizobium japonicum MAFF 303099, complete genome	7036071	323684	332449	7036071	capsid	Sulfitobacter_phage(33.33%)	8	NA	NA
WP_010909385.1|323684_326231_-	hypothetical protein	NA	A0A2L0V0Z1	Agrobacterium_phage	35.4	5.4e-08
WP_044547584.1|326234_327248_-	hypothetical protein	NA	M4NM77	Sulfitobacter_phage	51.0	1.4e-76
WP_044547586.1|327234_327681_-	GNAT family N-acetyltransferase	NA	X2CY06	Brucella_phage	49.1	2.9e-26
WP_010909388.1|327677_329264_-	hypothetical protein	NA	A0A088F6U1	Sulfitobacter_phage	44.8	4.9e-116
WP_010909389.1|329260_329962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010909390.1|329968_330796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010909391.1|330877_331420_-	hypothetical protein	NA	Q94MS0	Myxococcus_phage	47.2	1.6e-18
WP_010909392.1|331432_332449_-|capsid	phage major capsid protein	capsid	A0A0H4IR21	Brucella_phage	37.4	5.2e-55
>prophage 2
NC_002678	Mesorhizobium japonicum MAFF 303099, complete genome	7036071	901410	909578	7036071	tRNA	uncultured_Mediterranean_phage(85.71%)	9	NA	NA
WP_010909886.1|901410_902958_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A2K9VGT1	Pontimonas_phage	37.4	1.6e-10
WP_010909887.1|903135_903789_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	39.5	9.5e-18
WP_010909888.1|903785_904544_-	5'/3'-nucleotidase SurE	NA	NA	NA	NA	NA
WP_010909889.1|904543_905848_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	56.6	1.4e-100
WP_010909890.1|905952_906828_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	46.3	6.7e-51
WP_044547812.1|906824_907580_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_010909892.1|907611_907833_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	65.9	5.1e-08
WP_010909893.1|908013_908778_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	46.2	9.4e-41
WP_044550554.1|908774_909578_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	33.1	8.4e-32
>prophage 3
NC_002678	Mesorhizobium japonicum MAFF 303099, complete genome	7036071	4753634	4907165	7036071	tRNA,transposase,integrase,holin	Paenibacillus_phage(10.53%)	101	4766923:4766939	4902433:4902449
WP_010913590.1|4753634_4754453_+|holin	phosphocholine cytidylyltransferase family protein	holin	NA	NA	NA	NA
WP_010913591.1|4754449_4755049_+|holin	phosphatidylcholine/phosphatidylserine synthase	holin	NA	NA	NA	NA
WP_010913592.1|4755079_4755994_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010913593.1|4756026_4757919_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A1V0SCP4	Indivirus	26.4	9.8e-23
WP_157866185.1|4757957_4759172_-	alkaline phosphatase family protein	NA	NA	NA	NA	NA
WP_044548997.1|4759431_4761138_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010913596.1|4761192_4761984_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	29.6	1.6e-22
WP_010913597.1|4762174_4763737_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010913598.1|4763742_4764774_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.6	4.9e-16
WP_010913599.1|4764770_4765730_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010913600.1|4765729_4766671_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010913601.1|4766667_4767528_+	ABC transporter permease	NA	NA	NA	NA	NA
4766923:4766939	attL	CGCACCAGCTTGCTGGT	NA	NA	NA	NA
WP_044549000.1|4767572_4767959_-	ATP-binding domain-containing protein	NA	NA	NA	NA	NA
4766923:4766939	attL	CGCACCAGCTTGCTGGT	NA	NA	NA	NA
WP_044551219.1|4769046_4769640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010913605.1|4770104_4770404_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010913606.1|4770400_4770790_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_193363996.1|4770791_4770935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010913608.1|4771736_4772630_+	nitrogenase iron protein	NA	NA	NA	NA	NA
WP_010913609.1|4772735_4774241_+	nitrogenase molybdenum-iron protein alpha chain	NA	NA	NA	NA	NA
WP_010913610.1|4774372_4775914_+	nitrogenase molybdenum-iron protein subunit beta	NA	NA	NA	NA	NA
WP_010913611.1|4775973_4777464_+	nitrogenase iron-molybdenum cofactor biosynthesis protein NifE	NA	NA	NA	NA	NA
WP_010913612.1|4777473_4778856_+	nitrogenase iron-molybdenum cofactor biosynthesis protein NifN	NA	NA	NA	NA	NA
WP_010913613.1|4778821_4779319_+	nitrogen fixation protein NifX	NA	NA	NA	NA	NA
WP_010913614.1|4779335_4779815_+	NifX-associated nitrogen fixation protein	NA	NA	NA	NA	NA
WP_027056524.1|4779839_4780625_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010913616.1|4780723_4781611_+	universal stress protein	NA	NA	NA	NA	NA
WP_010913618.1|4783452_4784049_-	orotate phosphoribosyltransferase	NA	E3SNS3	Prochlorococcus_phage	35.4	1.5e-17
WP_010913619.1|4785118_4785862_-	acetoacetate decarboxylase	NA	NA	NA	NA	NA
WP_157866186.1|4787320_4787914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044551223.1|4789386_4790691_+	lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein	NA	NA	NA	NA	NA
WP_010913624.1|4791456_4792236_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_044551225.1|4792556_4794557_+|tRNA	class I tRNA ligase family protein	tRNA	NA	NA	NA	NA
WP_010913626.1|4796118_4796322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010913627.1|4796318_4796636_+	ferredoxin III, nif-specific	NA	NA	NA	NA	NA
WP_044549016.1|4796673_4796994_+	exopolysaccharide production repressor protein	NA	NA	NA	NA	NA
WP_010913628.1|4798303_4799317_+	1-aminocyclopropane-1-carboxylate deaminase	NA	NA	NA	NA	NA
WP_157866060.1|4802511_4802967_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010913630.1|4803421_4804159_-	7-cyano-7-deazaguanine synthase QueC	NA	M1PKZ7	Cellulophaga_phage	42.7	8.8e-44
WP_010913631.1|4804163_4804517_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010913632.1|4804513_4805149_-	7-carboxy-7-deazaguanine synthase	NA	R4TAH8	Halovirus	32.4	2.4e-05
WP_010913633.1|4805385_4805847_-	iron-sulfur cluster assembly scaffold protein	NA	A0A218MKD1	uncultured_virus	43.6	5.2e-10
WP_010913634.1|4805873_4806194_-	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA	NA
WP_010913635.1|4807199_4808459_+	diaminobutyrate--2-oxoglutarate transaminase	NA	NA	NA	NA	NA
WP_044549029.1|4808448_4809291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044551228.1|4809406_4809910_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_157866062.1|4810683_4811450_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	48.6	2.5e-25
WP_044549035.1|4811512_4811803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010913644.1|4812606_4813353_-	LuxR family transcriptional regulator	NA	A0A1I9KF49	Aeromonas_phage	29.3	5.4e-17
WP_010913646.1|4814972_4815971_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D2W391	Mycobacterium_phage	27.3	3.3e-09
WP_010913647.1|4815967_4816906_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_010913648.1|4816902_4818126_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	27.1	3.5e-05
WP_010913650.1|4819666_4821232_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_010913652.1|4822310_4823537_-	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_010913653.1|4824281_4825448_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_044551230.1|4825767_4826808_+|transposase	IS110-like element ISMlo2 family transposase	transposase	A0A1S7J231	Thermus_phage	27.9	7.6e-09
WP_010913660.1|4829690_4830860_-	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_010913662.1|4832440_4833724_+	KamA family radical SAM protein	NA	NA	NA	NA	NA
4831344:4831360	attR	CGCACCAGCTTGCTGGT	NA	NA	NA	NA
WP_027052994.1|4834003_4834294_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
4831344:4831360	attR	CGCACCAGCTTGCTGGT	NA	NA	NA	NA
WP_157866188.1|4837700_4838873_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
WP_010913671.1|4839300_4840341_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_010913673.1|4840558_4841587_+|transposase	IS110-like element ISMlo3 family transposase	transposase	NA	NA	NA	NA
WP_157866064.1|4842269_4842791_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_157866066.1|4843095_4843281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010913677.1|4843916_4845293_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_044551235.1|4845315_4846806_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_048894799.1|4846823_4847711_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010913680.1|4847712_4849035_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	21.9	6.0e-11
WP_010913681.1|4849392_4849560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010913682.1|4849644_4849905_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_010913688.1|4851863_4852751_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010913692.1|4854823_4855459_-	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
WP_010913695.1|4857785_4858655_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_010913696.1|4859110_4861072_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_010913697.1|4861074_4862658_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	66.7	1.6e-18
WP_157866189.1|4862684_4863491_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010913699.1|4863472_4865161_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	36.0	2.0e-67
WP_010913700.1|4865425_4866886_-	dipeptidase	NA	NA	NA	NA	NA
WP_193363997.1|4866921_4867203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044549052.1|4867226_4867436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052292097.1|4868198_4869527_+	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010913706.1|4869541_4870672_+	phosphotransferase enzyme family protein	NA	NA	NA	NA	NA
WP_044549054.1|4870948_4872106_+	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_044549035.1|4872404_4872695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866068.1|4872757_4873553_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	48.6	2.6e-25
WP_010913709.1|4873598_4874606_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_010913710.1|4875015_4876230_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
WP_010913717.1|4880023_4880245_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_010913646.1|4880342_4881341_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D2W391	Mycobacterium_phage	27.3	3.3e-09
WP_010913647.1|4881337_4882276_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_010913648.1|4882272_4883496_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	27.1	3.5e-05
WP_080511929.1|4883606_4884428_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_048894801.1|4887105_4887393_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010913721.1|4887560_4888040_+	helix-turn-helix domain containing protein	NA	NA	NA	NA	NA
WP_010913722.1|4888298_4890377_+	recombinase family protein	NA	NA	NA	NA	NA
WP_044549064.1|4892813_4893518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_193364022.1|4894583_4894733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010913730.1|4898797_4899223_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_080511931.1|4899351_4899789_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010913734.1|4900275_4901505_-	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_044551230.1|4901951_4902992_+|transposase	IS110-like element ISMlo2 family transposase	transposase	A0A1S7J231	Thermus_phage	27.9	7.6e-09
WP_010913671.1|4906124_4907165_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NC_002678	Mesorhizobium japonicum MAFF 303099, complete genome	7036071	4975092	5049504	7036071	transposase,integrase	uncultured_Mediterranean_phage(33.33%)	51	5042126:5042140	5050823:5050837
WP_157866075.1|4975092_4976239_+|transposase	IS3-like element ISMlo4 family transposase	transposase	U5P429	Shigella_phage	47.9	2.2e-65
WP_010913814.1|4978427_4979390_+	ArdC family protein	NA	A0A1B1IRD0	uncultured_Mediterranean_phage	41.6	1.2e-48
WP_044551266.1|4979596_4980016_+	DUF2958 domain-containing protein	NA	NA	NA	NA	NA
WP_044549133.1|4980094_4981825_+	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	50.8	5.3e-07
WP_010913817.1|4982069_4983044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010913818.1|4983460_4984642_+	5-demethoxyubiquinol-8 5-hydroxylase UbiM	NA	NA	NA	NA	NA
WP_010913819.1|4985014_4985620_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_044549143.1|4986869_4987463_+	NodA family N-acyltransferase	NA	NA	NA	NA	NA
WP_010913821.1|4987590_4988865_+	chitooligosaccharide synthase NodC	NA	NA	NA	NA	NA
WP_010913822.1|4988914_4989937_+	nodulation factor ABC transporter ATP-binding protein NodI	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.4	1.1e-25
WP_010913823.1|4989940_4990729_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010913824.1|4991032_4993054_+	carbamoyltransferase	NA	A0A1B1IVF2	uncultured_Mediterranean_phage	31.0	1.2e-50
WP_010913825.1|4993171_4993282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010913827.1|4993980_4995450_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010913829.1|4995962_4996622_+	chitooligosaccharide deacetylase NodB	NA	NA	NA	NA	NA
WP_010913831.1|4997111_4997735_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010913832.1|4997762_4998413_+	LysE family translocator	NA	NA	NA	NA	NA
WP_162034361.1|4998676_4999489_+	TIM barrel protein	NA	NA	NA	NA	NA
WP_010913834.1|4999503_5000448_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010913835.1|5001164_5002286_+	acyltransferase family protein	NA	NA	NA	NA	NA
WP_096453860.1|5002321_5002609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010913836.1|5002520_5003426_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_044549158.1|5004174_5005401_-	MFS transporter	NA	NA	NA	NA	NA
WP_006328923.1|5007530_5007854_+	DUF736 domain-containing protein	NA	NA	NA	NA	NA
WP_006328932.1|5008016_5008286_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010913839.1|5008282_5008831_+	S26 family signal peptidase	NA	NA	NA	NA	NA
WP_010913840.1|5008818_5009502_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	37.9	6.9e-11
WP_044549164.1|5009684_5010773_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_010913842.1|5011307_5013278_+	relaxase/mobilization nuclease and DUF3363 domain-containing protein	NA	NA	NA	NA	NA
WP_010913843.1|5013327_5014887_-	E2 ligase fold family C protein	NA	NA	NA	NA	NA
WP_044549167.1|5014890_5015379_-	Mov34/MPN/PAD-1 family protein	NA	NA	NA	NA	NA
WP_010913845.1|5015375_5015993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044549170.1|5015985_5016270_-	DUF2604 domain-containing protein	NA	NA	NA	NA	NA
WP_010913847.1|5016993_5017953_+	DUF1403 family protein	NA	NA	NA	NA	NA
WP_010913848.1|5017955_5018678_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	29.3	6.2e-18
WP_010913849.1|5018755_5019340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044551271.1|5020121_5021447_+	DUF4365 domain-containing protein	NA	NA	NA	NA	NA
WP_044549173.1|5021443_5022898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866195.1|5025175_5026438_-	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_010913856.1|5027870_5028980_+	histidine decarboxylase	NA	M1HEU9	Acanthocystis_turfacea_Chlorella_virus	34.5	8.0e-49
WP_010913857.1|5029164_5030562_+	type III glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010913858.1|5030900_5032094_-	alanine racemase	NA	NA	NA	NA	NA
WP_157866076.1|5032954_5033227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010913862.1|5034194_5035535_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_157866196.1|5035636_5036770_+	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010913867.1|5038630_5040736_-	recombinase family protein	NA	NA	NA	NA	NA
WP_193363998.1|5041899_5043384_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
5042126:5042140	attL	CGGCAGGCCTGCCGC	NA	NA	NA	NA
WP_010913871.1|5044982_5045759_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010913873.1|5046732_5047761_-|integrase	site-specific integrase	integrase	A0A2D2W4Z2	Ralstonia_phage	23.9	9.8e-09
WP_010913874.1|5047757_5048735_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_157866197.1|5048727_5049504_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
5050823:5050837	attR	GCGGCAGGCCTGCCG	NA	NA	NA	NA
>prophage 5
NC_002678	Mesorhizobium japonicum MAFF 303099, complete genome	7036071	5088717	5186645	7036071	transposase,integrase	Streptococcus_phage(50.0%)	56	5088026:5088040	5102919:5102933
5088026:5088040	attL	ATCGATGCCGTCGCC	NA	NA	NA	NA
WP_010913914.1|5088717_5090325_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_010913915.1|5090331_5091210_+	TniB family NTP-binding protein	NA	NA	NA	NA	NA
WP_010913916.1|5091206_5092088_+	TniQ family protein	NA	NA	NA	NA	NA
WP_157866078.1|5093317_5094751_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_010913921.1|5094662_5095214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044551312.1|5096083_5098708_+	AMP-binding protein	NA	A0A2K9L3I8	Tupanvirus	23.9	1.8e-30
WP_010913924.1|5098761_5099604_+	L-proline cis-4-hydroxylase	NA	NA	NA	NA	NA
WP_010913925.1|5099682_5101329_-	MFS transporter	NA	NA	NA	NA	NA
WP_044549195.1|5101500_5102745_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010913927.1|5102882_5103899_+	membrane dipeptidase	NA	NA	NA	NA	NA
5102919:5102933	attR	ATCGATGCCGTCGCC	NA	NA	NA	NA
WP_010913928.1|5103952_5105803_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.5	2.4e-21
WP_010913929.1|5105840_5107436_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010913930.1|5107465_5108410_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010913931.1|5108421_5109264_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010913932.1|5109371_5110070_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010913933.1|5110243_5111152_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010913934.1|5111255_5112833_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010913935.1|5113563_5114787_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_010913936.1|5114951_5115806_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.3	2.5e-42
WP_010913937.1|5115991_5116666_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_044549200.1|5116737_5117439_+|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	43.1	3.5e-42
WP_010913939.1|5117464_5117647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010913940.1|5117970_5118849_-	DUF3800 domain-containing protein	NA	NA	NA	NA	NA
WP_010913943.1|5120456_5121077_+	poly-gamma-glutamate hydrolase family protein	NA	O64134	Bacillus_phage	38.7	3.1e-18
WP_044549202.1|5120983_5121889_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010913945.1|5121911_5122748_+	S1/P1 nuclease	NA	NA	NA	NA	NA
WP_010913946.1|5122820_5124650_+	nuclease	NA	NA	NA	NA	NA
WP_157866200.1|5125809_5131020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866080.1|5135469_5135856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010913956.1|5135925_5136405_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_157866201.1|5140042_5146678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010913962.1|5148328_5149000_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_044551336.1|5149044_5150487_+	type II and III secretion system protein family protein	NA	NA	NA	NA	NA
WP_010913964.1|5150495_5151056_+	CpaD family pilus assembly lipoprotein	NA	NA	NA	NA	NA
WP_010913965.1|5151846_5153751_-	nodulation protein NOLX	NA	NA	NA	NA	NA
WP_063825847.1|5153948_5154650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010913967.1|5154833_5155337_+	nodulation protein NolB	NA	NA	NA	NA	NA
WP_044549206.1|5155346_5156210_+	type III secretion inner membrane ring lipoprotein SctJ	NA	NA	NA	NA	NA
WP_010913969.1|5156211_5156850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010913970.1|5156846_5157470_+	type III secretion system stator protein SctL	NA	NA	NA	NA	NA
WP_010913971.1|5157466_5158825_+	type III secretion system ATPase SctN	NA	NA	NA	NA	NA
WP_010913972.1|5158800_5159334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010913973.1|5159361_5160426_+	type III secretion system cytoplasmic ring protein SctQ	NA	NA	NA	NA	NA
WP_010913974.1|5160418_5161084_+	type III secretion system export apparatus subunit SctR	NA	NA	NA	NA	NA
WP_044551339.1|5161086_5161362_+	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
WP_010913976.1|5161370_5162189_+	type III secretion system export apparatus subunit SctT	NA	NA	NA	NA	NA
WP_010913977.1|5162185_5163223_+	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_044551341.1|5164198_5164519_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010913978.1|5164911_5165802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010913979.1|5166040_5168086_+	type III secretion system export apparatus subunit SctV	NA	NA	NA	NA	NA
WP_010913980.1|5168146_5168644_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_157866082.1|5169377_5170094_-|transposase	IS6 family transposase	transposase	A0A1X9I6E7	Streptococcus_phage	34.1	7.0e-22
WP_044551343.1|5173227_5175279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866083.1|5175629_5176346_-|transposase	IS6 family transposase	transposase	A0A1X9I6E7	Streptococcus_phage	34.1	2.4e-22
WP_010913990.1|5176730_5185901_+	shikimate kinase	NA	NA	NA	NA	NA
WP_157866082.1|5185928_5186645_-|transposase	IS6 family transposase	transposase	A0A1X9I6E7	Streptococcus_phage	34.1	7.0e-22
>prophage 6
NC_002678	Mesorhizobium japonicum MAFF 303099, complete genome	7036071	6959544	7006652	7036071	terminase,protease,capsid,portal,integrase	Sinorhizobium_phage(29.63%)	56	6950819:6950834	6993727:6993742
6950819:6950834	attL	CATCACCTTCGCCGAG	NA	NA	NA	NA
WP_010915651.1|6959544_6960819_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.8	2.9e-135
WP_027046751.1|6961093_6963505_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	50.4	9.1e-207
WP_006201846.1|6963702_6963975_+	HU family DNA-binding protein	NA	A0A172Q061	Acinetobacter_phage	35.2	1.0e-05
WP_010915653.1|6964302_6964509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010915654.1|6964737_6965760_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010915655.1|6965925_6966492_+	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_010915656.1|6966495_6967239_+	creatininase family protein	NA	NA	NA	NA	NA
WP_010915657.1|6967523_6968441_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_032933358.1|6968452_6969574_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_032929955.1|6969672_6971340_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010915660.1|6971623_6972679_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G3M9Y6	Bacillus_virus	32.7	7.6e-25
WP_010915661.1|6972705_6973158_+	RbsD/FucU family protein	NA	NA	NA	NA	NA
WP_010915662.1|6973162_6974092_+	ribokinase	NA	NA	NA	NA	NA
WP_044550271.1|6974257_6974728_-	hypothetical protein	NA	A0A2K9L9B3	Tupanvirus	49.1	3.2e-07
WP_010915664.1|6974829_6975111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010915665.1|6975630_6976710_-|integrase	site-specific integrase	integrase	A0A240F4W2	Ochrobactrum_phage	37.7	1.7e-56
WP_010915666.1|6976903_6977128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010915667.1|6977124_6977367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157866132.1|6977372_6977603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157866133.1|6978085_6978790_-	helix-turn-helix domain-containing protein	NA	A0A141GF24	Brucella_phage	57.0	9.0e-14
WP_044550281.1|6978864_6979089_+	hypothetical protein	NA	A0A141GF25	Brucella_phage	52.7	1.1e-13
WP_044550284.1|6979085_6979586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044550287.1|6979711_6980197_+	hypothetical protein	NA	A0A291AUJ7	Sinorhizobium_phage	40.8	2.5e-23
WP_141700999.1|6980286_6980553_+	HNH endonuclease	NA	C4NTC3	Sulfitobacter_phage	74.3	6.2e-24
WP_010915672.1|6980549_6981731_+	hypothetical protein	NA	A0A068C9F4	Rhizobium_phage	59.2	8.9e-115
WP_157866135.1|6981733_6982417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044550295.1|6982467_6982740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010915675.1|6982732_6983029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010915676.1|6983025_6983316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010915677.1|6983312_6983612_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010915678.1|6983608_6984169_+	hypothetical protein	NA	A0A291AUJ2	Sinorhizobium_phage	39.5	2.9e-23
WP_044550298.1|6984165_6986121_+	DNA cytosine methyltransferase	NA	A0A223W0A9	Agrobacterium_phage	57.6	1.2e-185
WP_044551721.1|6986255_6987248_+	hypothetical protein	NA	A0A291AUK7	Sinorhizobium_phage	36.1	6.9e-36
WP_044551723.1|6987219_6987903_+	transcriptional antiterminator NusG	NA	NA	NA	NA	NA
WP_048894845.1|6988015_6988375_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_157866216.1|6988425_6988932_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010915684.1|6988936_6990733_+|terminase	terminase large subunit	terminase	Q3HQS7	Burkholderia_phage	52.6	9.2e-172
WP_157866217.1|6990735_6992040_+|portal	phage portal protein	portal	Q6JIM9	Burkholderia_virus	36.2	8.8e-55
WP_010915686.1|6992036_6992882_+|protease	Clp protease ClpP	protease	A0A141GEW1	Brucella_phage	48.1	2.5e-63
WP_044551730.1|6993028_6994300_+|capsid	phage major capsid protein	capsid	A0A2D1GNH4	Pseudomonas_phage	37.8	2.0e-72
6993727:6993742	attR	CATCACCTTCGCCGAG	NA	NA	NA	NA
WP_044550303.1|6994385_6994823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866136.1|6994885_6995170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010915690.1|6995181_6995835_+	hypothetical protein	NA	F8TVA2	EBPR_siphovirus	36.0	4.1e-29
WP_157866137.1|6995944_6996232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010915692.1|6996231_6996873_+	hypothetical protein	NA	F8TVA4	EBPR_siphovirus	32.7	5.3e-21
WP_010915693.1|6996872_6997313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010915694.1|6997357_6998299_+	hypothetical protein	NA	K4JUH2	Caulobacter_phage	26.0	1.2e-10
WP_010915695.1|6998298_6998523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010915696.1|6998605_6999040_+	hypothetical protein	NA	F8TVA8	EBPR_siphovirus	38.2	4.2e-22
WP_157866138.1|6999036_6999339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010915698.1|6999405_7002363_+	hypothetical protein	NA	A0A076G7H2	Sinorhizobium_phage	29.2	2.4e-60
WP_010915699.1|7002366_7003122_+	hypothetical protein	NA	A0A076GD29	Sinorhizobium_phage	53.4	1.2e-72
WP_193364020.1|7003158_7003758_+	hypothetical protein	NA	A0A076G707	Sinorhizobium_phage	61.3	1.9e-68
WP_157866139.1|7003751_7003943_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010915702.1|7003977_7004385_+	hypothetical protein	NA	A0A076G6J4	Sinorhizobium_phage	40.7	6.8e-22
WP_157866140.1|7004354_7006652_+	hypothetical protein	NA	A0A076G8H4	Sinorhizobium_phage	51.8	4.5e-195
>prophage 1
NC_002679	Mesorhizobium japonicum MAFF 303099 plasmid pMLa, complete sequence	351911	2137	64325	351911	transposase	Bacillus_phage(14.29%)	45	NA	NA
WP_010915919.1|2137_3256_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_010915779.1|3880_4138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010916048.1|4624_6148_-	GMC family oxidoreductase	NA	NA	NA	NA	NA
WP_080512153.1|6157_6532_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010915920.1|6533_6887_-	multidrug efflux SMR transporter	NA	NA	NA	NA	NA
WP_162034383.1|6883_7930_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A2C9DTC1	Eastern_grey_kangaroopox_virus	30.1	2.6e-09
WP_044552075.1|8744_9230_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157866219.1|9608_10412_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010916045.1|10504_11878_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010915918.1|12306_13443_+	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_010915917.1|13483_14587_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010915916.1|14668_15748_+	ABC transporter ATP-binding protein	NA	A0A285PWH2	Cedratvirus	30.8	8.7e-16
WP_010915915.1|15744_16638_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010915914.1|16634_17471_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010915913.1|17494_18895_+	amidase	NA	NA	NA	NA	NA
WP_010915912.1|19048_20047_+	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA	NA
WP_157866221.1|20046_20694_+	DAK2 domain-containing protein	NA	NA	NA	NA	NA
WP_010915911.1|20690_22040_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_044552083.1|22842_25752_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	24.5	5.1e-63
WP_010915909.1|25896_26766_+	recombinase family protein	NA	E5FFF9	Burkholderia_phage	40.9	2.0e-26
WP_010916042.1|28359_29049_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010915908.1|29216_31226_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010915907.1|31222_32980_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010915906.1|32976_33867_+	3-keto-5-aminohexanoate cleavage protein	NA	A0A1V0SL81	Klosneuvirus	28.1	1.2e-18
WP_010915905.1|33863_34640_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	40.2	1.1e-09
WP_010915904.1|34675_35938_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_048894848.1|36005_36869_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010915902.1|36865_37801_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010915901.1|37793_38552_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	22.7	6.7e-07
WP_010915900.1|38544_39249_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.9	7.9e-10
WP_157866222.1|39290_39755_+	thioesterase family protein	NA	NA	NA	NA	NA
WP_080512154.1|40568_41420_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_080512155.1|42721_43477_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA	NA
WP_010916041.1|43630_44833_-|transposase	IS110 family transposase	transposase	A0A1B1P7S0	Bacillus_phage	25.3	1.1e-08
WP_157866223.1|45237_45963_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_162034381.1|46565_48380_+	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	27.9	2.1e-46
WP_010915895.1|48468_53811_+	type I polyketide synthase	NA	D0R7J2	Paenibacillus_phage	37.5	5.7e-52
WP_044552088.1|55096_56821_-	restriction endonuclease	NA	A0A2L1IZ21	Streptomyces_phage	44.0	9.0e-124
WP_157866225.1|57013_57406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044549035.1|57450_57741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866062.1|57803_58569_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	48.6	2.5e-25
WP_010915757.1|58721_58916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010915894.1|58912_59260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044552315.1|61823_62387_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010916038.1|63623_64325_-|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	43.1	7.1e-43
>prophage 2
NC_002679	Mesorhizobium japonicum MAFF 303099 plasmid pMLa, complete sequence	351911	283343	290776	351911	transposase,integrase	uncultured_Mediterranean_phage(50.0%)	7	274148:274163	297558:297573
274148:274163	attL	CCGCCATGCGCAGCGC	NA	NA	NA	NA
WP_010915803.1|283343_284594_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	23.0	4.1e-09
WP_010915802.1|284593_285544_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_010915801.1|285533_286544_+|integrase	site-specific integrase	integrase	A0A0K2CP59	Brevibacillus_phage	26.8	5.1e-18
WP_010915951.1|287396_288581_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_044552253.1|288611_289493_-|integrase	site-specific integrase	integrase	W8EHC2	Mycobacterium_phage	29.9	2.1e-12
WP_162034380.1|289458_289713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010915949.1|289759_290776_-|integrase	site-specific integrase	integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	25.7	7.1e-12
297558:297573	attR	GCGCTGCGCATGGCGG	NA	NA	NA	NA
