assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000009625.1_ASM962v1	NC_002678	Mesorhizobium japonicum MAFF 303099, complete genome	1	1462824-1463044	1	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh	Orphan	GCGCTGGCGCTGTTGGAGCCGCCGACATTGGCACCGGCCCCGGCGTTGCTGCC	53	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh	NA|86aa|up_3|NC_002678.2_1459745_1460003_+,NA|96aa|up_2|NC_002678.2_1460138_1460426_+,NA|55aa|up_0|NC_002678.2_1462089_1462254_-,NA|260aa|down_1|NC_002678.2_1464775_1465555_+,NA|236aa|down_8|NC_002678.2_1471680_1472388_+	NA|263aa|up_9|NC_002678.2_1454043_1454832_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|290aa|up_8|NC_002678.2_1454831_1455701_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|354aa|up_7|NC_002678.2_1455768_1456830_-	cd13588, PBP2_polyamine_1, The periplasmic-binding component of an uncharacterized ABC transporter involved in uptake of polyamines; contains the type 2 periplasmic binding fold	NA|326aa|up_6|NC_002678.2_1456869_1457847_-	cd01944, YegV_kinase_like, YegV-like sugar kinase	NA|345aa|up_5|NC_002678.2_1457843_1458878_-	COG1397, DraG, ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones]	NA|242aa|up_4|NC_002678.2_1458881_1459607_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|86aa|up_3|NC_002678.2_1459745_1460003_+	NA	NA|96aa|up_2|NC_002678.2_1460138_1460426_+	NA	NA|357aa|up_1|NC_002678.2_1460610_1461681_+	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|55aa|up_0|NC_002678.2_1462089_1462254_-	NA	NA|232aa|down_0|NC_002678.2_1463721_1464417_-	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|260aa|down_1|NC_002678.2_1464775_1465555_+	NA	NA|339aa|down_2|NC_002678.2_1465687_1466704_-	pfam09084, NMT1, NMT1/THI5 like	NA|256aa|down_3|NC_002678.2_1466696_1467464_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NC_002678.2_1467460_1468282_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|203aa|down_5|NC_002678.2_1468317_1468926_-	pfam07615, Ykof, YKOF-related Family	NA|173aa|down_6|NC_002678.2_1469241_1469760_-	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase	NA|529aa|down_7|NC_002678.2_1469935_1471522_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|236aa|down_8|NC_002678.2_1471680_1472388_+	NA	NA|157aa|down_9|NC_002678.2_1472479_1472950_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family
GCF_000009625.1_ASM962v1	NC_002678	Mesorhizobium japonicum MAFF 303099, complete genome	2	2393114-2393201	2	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh	Orphan	CAAAACCGCCGCGCACTTTTGGGTGACACGC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh	NA|142aa|up_6|NC_002678.2_2386929_2387355_+,NA|179aa|up_5|NC_002678.2_2387485_2388022_+,NA|71aa|down_3|NC_002678.2_2396185_2396398_-,NA|60aa|down_9|NC_002678.2_2400762_2400942_-	NA|185aa|up_9|NC_002678.2_2384415_2384970_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|347aa|up_8|NC_002678.2_2384988_2386029_-	COG4324, COG4324, Predicted aminopeptidase [General function prediction only]	NA|210aa|up_7|NC_002678.2_2386286_2386916_+	pfam10135, Rod-binding, Rod binding protein	NA|142aa|up_6|NC_002678.2_2386929_2387355_+	NA	NA|179aa|up_5|NC_002678.2_2387485_2388022_+	NA	NA|95aa|up_4|NC_002678.2_2388203_2388488_+	COG3255, COG3255, Putative sterol carrier protein [Lipid metabolism]	NA|190aa|up_3|NC_002678.2_2388578_2389148_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|378aa|up_2|NC_002678.2_2389300_2390434_-	cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase	NA|399aa|up_1|NC_002678.2_2390976_2392173_+	PRK08310, PRK08310, amidase; Provisional	NA|300aa|up_0|NC_002678.2_2392176_2393076_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|223aa|down_0|NC_002678.2_2393276_2393945_+	COG3683, COG3683, ABC-type uncharacterized transport system, periplasmic component [General function prediction only]	NA|404aa|down_1|NC_002678.2_2393941_2395153_+	COG2215, COG2215, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|326aa|down_2|NC_002678.2_2395195_2396173_-	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs	NA|71aa|down_3|NC_002678.2_2396185_2396398_-	NA	NA|328aa|down_4|NC_002678.2_2396480_2397464_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|229aa|down_5|NC_002678.2_2397496_2398183_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|395aa|down_6|NC_002678.2_2398266_2399451_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|125aa|down_7|NC_002678.2_2399602_2399977_+	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown]	NA|252aa|down_8|NC_002678.2_2400010_2400766_-	cd05233, SDR_c, classical (c) SDRs	NA|60aa|down_9|NC_002678.2_2400762_2400942_-	NA
GCF_000009625.1_ASM962v1	NC_002678	Mesorhizobium japonicum MAFF 303099, complete genome	3	3630121-3630402	1	CRT	no		csa3,cas3,WYL,DEDDh	Orphan	GGCAACGGCGGCGGCAAN	18	3	9	3630139-3630156|3630139-3630156|3630139-3630156|3630175-3630192|3630175-3630192|3630175-3630192|3630211-3630228|3630211-3630228|3630211-3630228	NC_002678.2_767818-767801|NC_002678.2_770374-770357|NC_002678.2_3616740-3616723|NC_002678.2_767818-767801|NC_002678.2_770374-770357|NC_002678.2_3616740-3616723|NC_002678.2_767818-767801|NC_002678.2_770374-770357|NC_002678.2_3616740-3616723	NA	6	6	Orphan	csa3,cas3,WYL,DEDDh	NA|59aa|up_8|NC_002678.2_3620283_3620460_+,NA|75aa|up_1|NC_002678.2_3627342_3627567_-,NA|113aa|down_2|NC_002678.2_3632984_3633323_+	NA|123aa|up_9|NC_002678.2_3619605_3619974_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|59aa|up_8|NC_002678.2_3620283_3620460_+	NA	NA|266aa|up_7|NC_002678.2_3620661_3621459_-	PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional	NA|259aa|up_6|NC_002678.2_3621466_3622243_-	PRK11365, ssuC, aliphatic sulfonate ABC transporter permease SsuC	NA|386aa|up_5|NC_002678.2_3622239_3623397_-	TIGR03565, alk_sulf_monoox, alkanesulfonate monooxygenase, FMNH(2)-dependent	NA|318aa|up_4|NC_002678.2_3623487_3624441_-	cd13557, PBP2_SsuA, Substrate binding domain of sulfonate binding protein, a member of the type 2 periplasmic binding fold superfamily	NA|346aa|up_3|NC_002678.2_3624680_3625718_-	COG2898, COG2898, Uncharacterized conserved protein [Function unknown]	NA|390aa|up_2|NC_002678.2_3626160_3627330_+	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|75aa|up_1|NC_002678.2_3627342_3627567_-	NA	NA|668aa|up_0|NC_002678.2_3627700_3629704_-	COG3211, PhoX, Predicted phosphatase [General function prediction only]	NA|221aa|down_0|NC_002678.2_3630762_3631425_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|464aa|down_1|NC_002678.2_3631421_3632813_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|113aa|down_2|NC_002678.2_3632984_3633323_+	NA	NA|237aa|down_3|NC_002678.2_3633351_3634062_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|93aa|down_4|NC_002678.2_3634357_3634636_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|583aa|down_5|NC_002678.2_3634702_3636451_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|241aa|down_6|NC_002678.2_3636523_3637246_-	TIGR01428, Haloacetate_dehalogenase, 2-haloalkanoic acid dehalogenase, type II	NA|309aa|down_7|NC_002678.2_3637329_3638256_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|297aa|down_8|NC_002678.2_3638461_3639352_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|209aa|down_9|NC_002678.2_3639383_3640010_-	pfam02245, Pur_DNA_glyco, Methylpurine-DNA glycosylase (MPG)
GCF_000009625.1_ASM962v1	NC_002678	Mesorhizobium japonicum MAFF 303099, complete genome	4	6963994-6964083	3	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh	Orphan	GACCAGAAAAGCCGGGCTTGCCCGGCTTTTCA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh	NA|197aa|up_4|NC_002678.2_6957702_6958293_-,NA|69aa|down_0|NC_002678.2_6964302_6964509_+	NA|427aa|up_9|NC_002678.2_6952516_6953797_+	PRK05994, PRK05994, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|115aa|up_8|NC_002678.2_6953803_6954148_+	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only]	NA|320aa|up_7|NC_002678.2_6954148_6955108_-	pfam09338, Gly_reductase, Glycine/sarcosine/betaine reductase component B subunits	NA|417aa|up_6|NC_002678.2_6955247_6956498_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|368aa|up_5|NC_002678.2_6956602_6957706_+	PRK11259, solA, N-methyl-L-tryptophan oxidase	NA|197aa|up_4|NC_002678.2_6957702_6958293_-	NA	NA|210aa|up_3|NC_002678.2_6958619_6959249_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|425aa|up_2|NC_002678.2_6959544_6960819_+	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|804aa|up_1|NC_002678.2_6961093_6963505_+	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|91aa|up_0|NC_002678.2_6963702_6963975_+	COG0776, HimA, Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]	NA|69aa|down_0|NC_002678.2_6964302_6964509_+	NA	NA|341aa|down_1|NC_002678.2_6964737_6965760_-	cd19161, AKR_AKR15A1, Microbacterium luteolum pyridoxal 4-dehydrogenase (PLD) and similar proteins	NA|189aa|down_2|NC_002678.2_6965925_6966492_+	cd05005, SIS_PHI, Hexulose-6-phosphate isomerase (PHI)	NA|248aa|down_3|NC_002678.2_6966495_6967239_+	COG1402, COG1402, Uncharacterized protein, putative amidase [General function prediction only]	NA|306aa|down_4|NC_002678.2_6967523_6968441_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|374aa|down_5|NC_002678.2_6968452_6969574_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|556aa|down_6|NC_002678.2_6969672_6971340_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|352aa|down_7|NC_002678.2_6971623_6972679_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|151aa|down_8|NC_002678.2_6972705_6973158_+	COG4154, FucU, Fucose dissimilation pathway protein FucU [Carbohydrate transport and metabolism]	NA|310aa|down_9|NC_002678.2_6973162_6974092_+	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP
