assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000009825.1_ASM982v1	NC_006582	Bacillus clausii KSM-K16, complete genome	1	1676244-1676326	1	CRISPRCasFinder	no		cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	Orphan	AAAACCCCCCAGTAATGGGGAGC	23	1	2	1676267-1676303|1676267-1676303	NC_006582.1_3974902-3974866|NC_006582.1_1728774-1728810	NA	1	1	Orphan	cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	NA,NA	NA|429aa|up_9|NC_006582.1_1665467_1666754_+	PRK12297, obgE, GTPase CgtA; Reviewed	NA|148aa|up_8|NC_006582.1_1666939_1667383_+	PRK04435, PRK04435, ACT domain-containing protein	NA|292aa|up_7|NC_006582.1_1667398_1668274_+	PRK11898, PRK11898, prephenate dehydratase; Provisional	NA|179aa|up_6|NC_006582.1_1668290_1668827_-	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only]	NA|372aa|up_5|NC_006582.1_1668834_1669950_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|511aa|up_4|NC_006582.1_1670037_1671570_+	PRK08071, PRK08071, L-aspartate oxidase; Provisional	NA|283aa|up_3|NC_006582.1_1671550_1672399_+	PRK08072, PRK08072, carboxylating nicotinate-nucleotide diphosphorylase	NA|365aa|up_2|NC_006582.1_1672389_1673484_+	PRK09375, PRK09375, quinolinate synthase NadA	NA|510aa|up_1|NC_006582.1_1673797_1675327_+	TIGR02899, hypothetical_conserved_protein, spore coat assembly protein SafA	NA|279aa|up_0|NC_006582.1_1675405_1676242_+	pfam09580, Spore_YhcN_YlaJ, Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ)	NA|125aa|down_0|NC_006582.1_1676336_1676711_-	cd13913, ba3_CcO_II_C, C-terminal cupredoxin domain of Ba3-like heme-copper oxidase subunit II	NA|173aa|down_1|NC_006582.1_1676864_1677383_+	pfam08955, BofC_C, BofC C-terminal domain	NA|200aa|down_2|NC_006582.1_1677513_1678113_+	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|334aa|down_3|NC_006582.1_1678128_1679130_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|68aa|down_4|NC_006582.1_1679122_1679326_+	pfam11146, DUF2905, Protein of unknown function (DUF2905)	NA|343aa|down_5|NC_006582.1_1679404_1680433_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|384aa|down_6|NC_006582.1_1680446_1681598_+	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|88aa|down_7|NC_006582.1_1681643_1681907_+	pfam02699, YajC, Preprotein translocase subunit	NA|127aa|down_8|NC_006582.1_1682014_1682395_-	TIGR04086, hypothetical_protein, putative membrane protein, TIGR04086 family	NA|155aa|down_9|NC_006582.1_1682529_1682994_+	COG2323, COG2323, Predicted membrane protein [Function unknown]
GCF_000009825.1_ASM982v1	NC_006582	Bacillus clausii KSM-K16, complete genome	2	3668449-3669271	1,2,1	CRT,CRISPRCasFinder,PILER-CR	no		cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	Orphan	ATTTCAATCCACGCACTCACAAAGAGTGCGAC,ATTTCAATCCACGCACTCACAAAGAGTGCGAC,ATTTCAATCCACGCACTCACAAAGAGTGCGAC	32,32,32	1	1	3669206-3669239	NC_006582.1_2970413-2970380	I-C:I-C:I-C	12,11,10	12	Orphan	cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	NA|482aa|up_4|NC_006582.1_3660491_3661937_+,NA|1160aa|up_3|NC_006582.1_3661960_3665440_+,NA|185aa|up_2|NC_006582.1_3665756_3666311_+,NA	NA|354aa|up_9|NC_006582.1_3654325_3655387_-	COG3867, COG3867, Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]	NA|281aa|up_8|NC_006582.1_3655548_3656391_-	COG3833, MalG, ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]	NA|413aa|up_7|NC_006582.1_3656390_3657629_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|420aa|up_6|NC_006582.1_3657725_3658985_-	cd13658, PBP2_CMBP, The periplasmic binding component of ABC transport systems specific for cyclo/maltodextrin; possess the type 2 periplasmic binding fold	NA|331aa|up_5|NC_006582.1_3659173_3660166_-	cd01544, PBP1_GalR, ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism	NA|482aa|up_4|NC_006582.1_3660491_3661937_+	NA	NA|1160aa|up_3|NC_006582.1_3661960_3665440_+	NA	NA|185aa|up_2|NC_006582.1_3665756_3666311_+	NA	NA|289aa|up_1|NC_006582.1_3666530_3667397_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|270aa|up_0|NC_006582.1_3667476_3668286_-	COG1378, COG1378, Predicted transcriptional regulators [Transcription]	NA|220aa|down_0|NC_006582.1_3669458_3670118_-	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|286aa|down_1|NC_006582.1_3670114_3670972_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|297aa|down_2|NC_006582.1_3671241_3672132_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|330aa|down_3|NC_006582.1_3672297_3673287_+	COG1834, COG1834, N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]	NA|487aa|down_4|NC_006582.1_3673383_3674844_-	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain	NA|249aa|down_5|NC_006582.1_3674860_3675607_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|585aa|down_6|NC_006582.1_3675603_3677358_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|399aa|down_7|NC_006582.1_3677623_3678820_-	cd14728, Ere-like, Erythromycin esterase and succinoglycan biosynthesis related proteins	NA|166aa|down_8|NC_006582.1_3678983_3679481_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|319aa|down_9|NC_006582.1_3679566_3680523_+	pfam01636, APH, Phosphotransferase enzyme family
GCF_000009825.1_ASM982v1	NC_006582	Bacillus clausii KSM-K16, complete genome	3	3720845-3721873	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	Orphan	ATTTCAATCCACGCACTCACAAAGAGTGCGAC,ATTTCAATCCACGCACTCACAAAGAGTGCGAC,ATTTCAATCCACGCACTCACAAAGAGTGCGAC	32,32,32	2	2	3721347-3721381|3721340-3721374	NC_006582.1_2960494-2960460|NC_006582.1_2960494-2960460	I-C:I-C:I-C	15,15,15	15	Orphan	cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	NA,NA	NA|113aa|up_9|NC_006582.1_3711125_3711464_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|197aa|up_8|NC_006582.1_3711771_3712362_-	cd06166, Sortase_D_2, Sortase domain found in subfamily 2 of the class D family of sortases	NA|476aa|up_7|NC_006582.1_3712378_3713806_-	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|290aa|up_6|NC_006582.1_3714646_3715516_-	pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II	NA|353aa|up_5|NC_006582.1_3715516_3716575_-	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|449aa|up_4|NC_006582.1_3716595_3717942_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|92aa|up_3|NC_006582.1_3717967_3718243_-	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|160aa|up_2|NC_006582.1_3718245_3718725_-	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|263aa|up_1|NC_006582.1_3718717_3719506_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|315aa|up_0|NC_006582.1_3719688_3720633_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|156aa|down_0|NC_006582.1_3722154_3722622_-	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|245aa|down_1|NC_006582.1_3722718_3723453_-	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1)	NA|158aa|down_2|NC_006582.1_3723521_3723995_-	pfam17353, DUF5381, Family of unknown function (DUF5381)	NA|162aa|down_3|NC_006582.1_3724190_3724676_-	pfam07853, DUF1648, Protein of unknown function (DUF1648)	NA|253aa|down_4|NC_006582.1_3724804_3725563_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|528aa|down_5|NC_006582.1_3725707_3727291_+	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|442aa|down_6|NC_006582.1_3727317_3728643_+	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|455aa|down_7|NC_006582.1_3729930_3731295_-	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|278aa|down_8|NC_006582.1_3731321_3732155_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|291aa|down_9|NC_006582.1_3732144_3733017_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]
GCF_000009825.1_ASM982v1	NC_006582	Bacillus clausii KSM-K16, complete genome	4	3728825-3729521	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5	cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	 Type I-U?,Type I-C,Type I-U	ATTTCAATCCACGCACTCAC,ATTTCAATCCACGCACTCACATAGAGTGCGAC,ATTTCAATCCACGCACTCAC	20,32,20	2	2	3729057-3729091|3729457-3729489	NC_006582.1_2981070-2981036|NC_006582.1_2961954-2961922	NA:I-C:NA	10,10,10	10	TypeI-U?,TypeI-C,TypeI-U	cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	NA,NA|138aa|down_8|NC_006582.1_3740577_3740991_-	NA|160aa|up_9|NC_006582.1_3718245_3718725_-	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|263aa|up_8|NC_006582.1_3718717_3719506_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|315aa|up_7|NC_006582.1_3719688_3720633_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|156aa|up_6|NC_006582.1_3722154_3722622_-	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|245aa|up_5|NC_006582.1_3722718_3723453_-	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1)	NA|158aa|up_4|NC_006582.1_3723521_3723995_-	pfam17353, DUF5381, Family of unknown function (DUF5381)	NA|162aa|up_3|NC_006582.1_3724190_3724676_-	pfam07853, DUF1648, Protein of unknown function (DUF1648)	NA|253aa|up_2|NC_006582.1_3724804_3725563_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|528aa|up_1|NC_006582.1_3725707_3727291_+	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|442aa|up_0|NC_006582.1_3727317_3728643_+	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|455aa|down_0|NC_006582.1_3729930_3731295_-	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|278aa|down_1|NC_006582.1_3731321_3732155_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|291aa|down_2|NC_006582.1_3732144_3733017_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|422aa|down_3|NC_006582.1_3733093_3734359_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|578aa|down_4|NC_006582.1_3734449_3736183_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|239aa|down_5|NC_006582.1_3736203_3736920_-	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|433aa|down_6|NC_006582.1_3736976_3738275_-	cd08993, GH130, Glycosyl hydrolase family 130	NA|168aa|down_7|NC_006582.1_3738258_3738762_-	cd08991, GH43_HoAraf43-like, Glycosyl hydrolase family 43 protein such as Halothermothrix orenii H 168  alpha-L-arabinofuranosidase (HoAraf43;Hore_20580)	NA|138aa|down_8|NC_006582.1_3740577_3740991_-	NA	cas2|97aa|down_9|NC_006582.1_3741785_3742076_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2
GCF_000009825.1_ASM982v1	NC_006582	Bacillus clausii KSM-K16, complete genome	5	3739183-3740347	5,4,4,5	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	 Type I-U?,Type I-C,Type I-U	ATTTCAATCCACGCACTCATATAGAGTGCGAC,ATTTCAATCCACGCACTCATATAGAGTGCGAC,CCGGAATTTCAATCCACGCACTCATATAGAGTGCGACT,ATTTCAATCCACGCACTCATATAGAGTGCGAC	32,32,38,32	3	3	3740015-3740047|3740080-3740115|3740281-3740314	NC_006582.1_2989996-2989964|NC_006582.1_2949537-2949502|NC_006582.1_2977394-2977361	I-C:I-C:I-C:I-C	17,17,15,15	17	TypeI-U?,TypeI-C,TypeI-U	cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	NA,NA|138aa|down_0|NC_006582.1_3740577_3740991_-	NA|528aa|up_9|NC_006582.1_3725707_3727291_+	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|442aa|up_8|NC_006582.1_3727317_3728643_+	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|455aa|up_7|NC_006582.1_3729930_3731295_-	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|278aa|up_6|NC_006582.1_3731321_3732155_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|291aa|up_5|NC_006582.1_3732144_3733017_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|422aa|up_4|NC_006582.1_3733093_3734359_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|578aa|up_3|NC_006582.1_3734449_3736183_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|239aa|up_2|NC_006582.1_3736203_3736920_-	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|433aa|up_1|NC_006582.1_3736976_3738275_-	cd08993, GH130, Glycosyl hydrolase family 130	NA|168aa|up_0|NC_006582.1_3738258_3738762_-	cd08991, GH43_HoAraf43-like, Glycosyl hydrolase family 43 protein such as Halothermothrix orenii H 168  alpha-L-arabinofuranosidase (HoAraf43;Hore_20580)	NA|138aa|down_0|NC_006582.1_3740577_3740991_-	NA	cas2|97aa|down_1|NC_006582.1_3741785_3742076_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_2|NC_006582.1_3742084_3743116_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|220aa|down_3|NC_006582.1_3743112_3743772_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|286aa|down_4|NC_006582.1_3743761_3744619_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|628aa|down_5|NC_006582.1_3744615_3746499_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|237aa|down_6|NC_006582.1_3746500_3747211_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|805aa|down_7|NC_006582.1_3747647_3750062_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|227aa|down_8|NC_006582.1_3750381_3751062_-	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane]	NA|520aa|down_9|NC_006582.1_3752518_3754078_-	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter
GCF_000009825.1_ASM982v1	NC_006582	Bacillus clausii KSM-K16, complete genome	6	3741040-3741603	6,5,6	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	 Type I-U?,Type I-C,Type I-U	ATTTCAATCCACGCACTCATATAGAGTGCGAC,CCACGCACTCACGAAGAGTGCGAC,ATTTCAACCCACGCACTCACGAAGAGTGCGAC	32,24,32	0	0	NA	NA	I-C:NA:I-C	8,8,7	8	TypeI-U?,TypeI-C,TypeI-U	cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	NA|138aa|up_0|NC_006582.1_3740577_3740991_-,NA|107aa|down_9|NC_006582.1_3754481_3754802_-	NA|442aa|up_9|NC_006582.1_3727317_3728643_+	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|455aa|up_8|NC_006582.1_3729930_3731295_-	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|278aa|up_7|NC_006582.1_3731321_3732155_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|291aa|up_6|NC_006582.1_3732144_3733017_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|422aa|up_5|NC_006582.1_3733093_3734359_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|578aa|up_4|NC_006582.1_3734449_3736183_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|239aa|up_3|NC_006582.1_3736203_3736920_-	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|433aa|up_2|NC_006582.1_3736976_3738275_-	cd08993, GH130, Glycosyl hydrolase family 130	NA|168aa|up_1|NC_006582.1_3738258_3738762_-	cd08991, GH43_HoAraf43-like, Glycosyl hydrolase family 43 protein such as Halothermothrix orenii H 168  alpha-L-arabinofuranosidase (HoAraf43;Hore_20580)	NA|138aa|up_0|NC_006582.1_3740577_3740991_-	NA	cas2|97aa|down_0|NC_006582.1_3741785_3742076_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|NC_006582.1_3742084_3743116_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|220aa|down_2|NC_006582.1_3743112_3743772_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|286aa|down_3|NC_006582.1_3743761_3744619_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|628aa|down_4|NC_006582.1_3744615_3746499_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|237aa|down_5|NC_006582.1_3746500_3747211_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|805aa|down_6|NC_006582.1_3747647_3750062_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|227aa|down_7|NC_006582.1_3750381_3751062_-	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane]	NA|520aa|down_8|NC_006582.1_3752518_3754078_-	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	NA|107aa|down_9|NC_006582.1_3754481_3754802_-	NA
GCF_000009825.1_ASM982v1	NC_006582	Bacillus clausii KSM-K16, complete genome	7	3751899-3752130	7,7,6	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	 Type I-U?,Type I-C,Type I-U	ATTTCAATCCACGCACTCACAAAGAGTGCGAT,ATTTCAATCCACGCACTCACAAAGAGTGCGAT,ATTTCAATCCACGCACTCACAAAGAGTGCGAT	32,32,32	1	1	3751997-3752031	NC_006582.1_2562988-2563022	I-C:I-C:I-C	3,3,3	3	TypeI-U?,TypeI-C,TypeI-U	cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	NA|138aa|up_8|NC_006582.1_3740577_3740991_-,NA|107aa|down_1|NC_006582.1_3754481_3754802_-	NA|168aa|up_9|NC_006582.1_3738258_3738762_-	cd08991, GH43_HoAraf43-like, Glycosyl hydrolase family 43 protein such as Halothermothrix orenii H 168  alpha-L-arabinofuranosidase (HoAraf43;Hore_20580)	NA|138aa|up_8|NC_006582.1_3740577_3740991_-	NA	cas2|97aa|up_7|NC_006582.1_3741785_3742076_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|up_6|NC_006582.1_3742084_3743116_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|220aa|up_5|NC_006582.1_3743112_3743772_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|286aa|up_4|NC_006582.1_3743761_3744619_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|628aa|up_3|NC_006582.1_3744615_3746499_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|237aa|up_2|NC_006582.1_3746500_3747211_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|805aa|up_1|NC_006582.1_3747647_3750062_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|227aa|up_0|NC_006582.1_3750381_3751062_-	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane]	NA|520aa|down_0|NC_006582.1_3752518_3754078_-	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	NA|107aa|down_1|NC_006582.1_3754481_3754802_-	NA	NA|157aa|down_2|NC_006582.1_3755328_3755799_+	COG4682, COG4682, Predicted membrane protein [Function unknown]	NA|337aa|down_3|NC_006582.1_3756328_3757339_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|292aa|down_4|NC_006582.1_3757536_3758412_+	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|494aa|down_5|NC_006582.1_3758431_3759913_-	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|145aa|down_6|NC_006582.1_3759926_3760361_-	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family	NA|324aa|down_7|NC_006582.1_3760372_3761344_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|302aa|down_8|NC_006582.1_3761410_3762316_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|319aa|down_9|NC_006582.1_3762929_3763886_-	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed
GCF_000009825.1_ASM982v1	NC_006582	Bacillus clausii KSM-K16, complete genome	8	3756033-3756121	8	CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	 Type I-U?,Type I-C,Type I-U	ATAACCCAATAAGTTCATATAAAAC	25	0	0	NA	NA	NA	1	1	TypeI-U?,TypeI-C,TypeI-U	cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	NA|107aa|up_1|NC_006582.1_3754481_3754802_-,NA	cas1|344aa|up_9|NC_006582.1_3742084_3743116_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|220aa|up_8|NC_006582.1_3743112_3743772_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|286aa|up_7|NC_006582.1_3743761_3744619_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|628aa|up_6|NC_006582.1_3744615_3746499_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|237aa|up_5|NC_006582.1_3746500_3747211_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|805aa|up_4|NC_006582.1_3747647_3750062_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|227aa|up_3|NC_006582.1_3750381_3751062_-	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane]	NA|520aa|up_2|NC_006582.1_3752518_3754078_-	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	NA|107aa|up_1|NC_006582.1_3754481_3754802_-	NA	NA|157aa|up_0|NC_006582.1_3755328_3755799_+	COG4682, COG4682, Predicted membrane protein [Function unknown]	NA|337aa|down_0|NC_006582.1_3756328_3757339_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|292aa|down_1|NC_006582.1_3757536_3758412_+	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|494aa|down_2|NC_006582.1_3758431_3759913_-	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|145aa|down_3|NC_006582.1_3759926_3760361_-	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family	NA|324aa|down_4|NC_006582.1_3760372_3761344_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|302aa|down_5|NC_006582.1_3761410_3762316_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|319aa|down_6|NC_006582.1_3762929_3763886_-	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed	NA|210aa|down_7|NC_006582.1_3763896_3764526_-	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|337aa|down_8|NC_006582.1_3764539_3765550_-	pfam02733, Dak1, Dak1 domain	NA|154aa|down_9|NC_006582.1_3765555_3766017_-	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase
GCF_000009825.1_ASM982v1	NC_006582	Bacillus clausii KSM-K16, complete genome	9	3807009-3807170	9	CRISPRCasFinder	no		cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	Orphan	ATTTCAATCCACGTACCCACAAAGAGTGCGAC	32	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	NA,NA|170aa|down_0|NC_006582.1_3807509_3808019_+	NA|373aa|up_9|NC_006582.1_3795019_3796138_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|293aa|up_8|NC_006582.1_3796263_3797142_+	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|244aa|up_7|NC_006582.1_3797248_3797980_-	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|366aa|up_6|NC_006582.1_3798346_3799444_+	pfam18801, RapH_N, response regulator aspartate phosphatase H, N terminal	NA|253aa|up_5|NC_006582.1_3799561_3800320_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|557aa|up_4|NC_006582.1_3800324_3801995_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|552aa|up_3|NC_006582.1_3802180_3803836_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|365aa|up_2|NC_006582.1_3803837_3804932_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|341aa|up_1|NC_006582.1_3804996_3806019_-	cd13546, PBP2_BitB, Substrate binding domain of a putative iron transporter BitB, a member of the type 2 periplasmic binding fold superfamily	NA|156aa|up_0|NC_006582.1_3806386_3806854_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|170aa|down_0|NC_006582.1_3807509_3808019_+	NA	NA|397aa|down_1|NC_006582.1_3808223_3809414_-	cd03887, M20_Acy1L2, M20 Peptidase Aminoacylase 1-like protein 2, amidohydrolase family	NA|398aa|down_2|NC_006582.1_3809468_3810662_-	cd03887, M20_Acy1L2, M20 Peptidase Aminoacylase 1-like protein 2, amidohydrolase family	NA|481aa|down_3|NC_006582.1_3810729_3812172_-	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|405aa|down_4|NC_006582.1_3812229_3813444_-	cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspartic acid) hydrolase-like proteins	NA|345aa|down_5|NC_006582.1_3813491_3814526_-	PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional	NA|331aa|down_6|NC_006582.1_3814522_3815515_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|308aa|down_7|NC_006582.1_3815558_3816482_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|306aa|down_8|NC_006582.1_3816493_3817411_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|521aa|down_9|NC_006582.1_3817481_3819044_-	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold
GCF_000009825.1_ASM982v1	NC_006582	Bacillus clausii KSM-K16, complete genome	10	3820899-3821324	10,7,8	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	Orphan	ATTTCAATCCACGCACTCACTAAGAGTGCGAC,ATTTCAATCCACGCACTCACNNAGAGTGCGAC,ATTTCAATCCACGCACTCAC	32,32,20	0	0	NA	NA	I-C:I-C:NA	6,6,5	6	Orphan	cas3,csa3,cas14j,DinG,casR,DEDDh,cas8c,WYL,cas2,cas1,cas4,cas7,cas5	NA,NA|102aa|down_5|NC_006582.1_3825781_3826087_+	NA|397aa|up_9|NC_006582.1_3808223_3809414_-	cd03887, M20_Acy1L2, M20 Peptidase Aminoacylase 1-like protein 2, amidohydrolase family	NA|398aa|up_8|NC_006582.1_3809468_3810662_-	cd03887, M20_Acy1L2, M20 Peptidase Aminoacylase 1-like protein 2, amidohydrolase family	NA|481aa|up_7|NC_006582.1_3810729_3812172_-	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|405aa|up_6|NC_006582.1_3812229_3813444_-	cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspartic acid) hydrolase-like proteins	NA|345aa|up_5|NC_006582.1_3813491_3814526_-	PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional	NA|331aa|up_4|NC_006582.1_3814522_3815515_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|308aa|up_3|NC_006582.1_3815558_3816482_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|306aa|up_2|NC_006582.1_3816493_3817411_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|521aa|up_1|NC_006582.1_3817481_3819044_-	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|292aa|up_0|NC_006582.1_3819789_3820665_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|299aa|down_0|NC_006582.1_3821607_3822504_-	COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]	NA|362aa|down_1|NC_006582.1_3822508_3823594_-	pfam05913, DUF871, Bacterial protein of unknown function (DUF871)	NA|113aa|down_2|NC_006582.1_3823596_3823935_-	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit	NA|103aa|down_3|NC_006582.1_3824121_3824430_+	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|423aa|down_4|NC_006582.1_3824454_3825723_+	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|102aa|down_5|NC_006582.1_3825781_3826087_+	NA	NA|439aa|down_6|NC_006582.1_3826079_3827396_+	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|272aa|down_7|NC_006582.1_3828583_3829399_+	pfam02517, Abi, CAAX protease self-immunity	NA|164aa|down_8|NC_006582.1_3829820_3830312_+	COG3402, COG3402, Uncharacterized conserved protein [Function unknown]	NA|503aa|down_9|NC_006582.1_3830311_3831820_+	COG3428, COG3428, Predicted membrane protein [Function unknown]
