The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_006347	Bacteroides fragilis YCH46, complete genome	5277274	2705681	2717164	5277274	transposase	unidentified_phage(66.67%)	10	NA	NA
WP_011202836.1|2705681_2707034_+	hypothetical protein	NA	H7BUQ7	unidentified_phage	66.9	2.5e-182
WP_005793835.1|2707043_2707985_+	hypothetical protein	NA	H7BUQ9	unidentified_phage	56.0	1.9e-91
WP_005793833.1|2707987_2708788_+	hypothetical protein	NA	H7BUR0	unidentified_phage	45.0	1.7e-61
WP_004312011.1|2709178_2710852_-|transposase	IS66-like element ISBf10 family transposase	transposase	A0A218MNE7	uncultured_virus	28.9	2.1e-37
WP_004312010.1|2710927_2711293_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_004319780.1|2711296_2711653_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_164927414.1|2711725_2712127_+	peptidase M15	NA	H2A0C2	Bacteroides_phage	63.1	7.9e-39
WP_005793829.1|2712139_2712583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005793827.1|2712579_2713044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005793825.1|2713105_2717164_+	hypothetical protein	NA	H7BUR2	unidentified_phage	29.1	1.3e-93
>prophage 2
NC_006347	Bacteroides fragilis YCH46, complete genome	5277274	2773902	2839296	5277274	head,protease,tRNA,capsid,tail,holin	Cellulophaga_phage(14.29%)	53	NA	NA
WP_010993029.1|2773902_2774580_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_011202856.1|2774656_2776654_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	37.1	2.7e-116
WP_011202857.1|2776757_2777651_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005787873.1|2777802_2778429_-	chloramphenicol acetyltransferase	NA	NA	NA	NA	NA
WP_011202858.1|2778524_2778899_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
WP_005793740.1|2779197_2780091_+	formylglycine-generating enzyme family protein	NA	A0A7F1	Microcystis_virus	41.1	2.6e-34
WP_008768894.1|2780527_2782828_-	patatin-like phospholipase family protein	NA	A0A1V0SCG0	Catovirus	26.8	1.6e-11
WP_011202859.1|2782997_2785043_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	27.8	1.1e-46
WP_011202860.1|2785173_2787708_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	40.6	6.3e-126
WP_005787886.1|2788099_2790637_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	32.2	2.8e-113
WP_005787888.1|2790669_2791881_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_005787896.1|2792230_2793352_-	universal stress protein	NA	NA	NA	NA	NA
WP_005787898.1|2793430_2793715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005787899.1|2793925_2794762_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_005787906.1|2794780_2796604_-	protein BatD	NA	NA	NA	NA	NA
WP_193345508.1|2796639_2797350_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_005787920.1|2797358_2798384_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_005787921.1|2798397_2799381_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_011202862.1|2799432_2800506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005793731.1|2800514_2801384_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_005787927.1|2801440_2802436_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_011202863.1|2802679_2804131_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_005787931.1|2804123_2804414_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_005787933.1|2804488_2805787_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_005787934.1|2805783_2806743_-	signal recognition particle-docking protein FtsY	NA	D6PHS7	uncultured_phage	41.1	2.0e-19
WP_005777897.1|2806892_2807051_-	DUF4295 domain-containing protein	NA	NA	NA	NA	NA
WP_002560155.1|2807070_2807259_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_005787937.1|2807285_2807546_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_011202865.1|2807667_2808900_-	CinA family nicotinamide mononucleotide deamidase-related protein	NA	B5TK85	Pseudomonas_phage	41.7	5.6e-19
WP_005787941.1|2808907_2809927_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	42.2	6.6e-66
WP_164927374.1|2809959_2814564_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_005787945.1|2814659_2815040_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_005793720.1|2815132_2816626_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	36.9	5.4e-93
WP_005793718.1|2816920_2817655_-	TIGR02757 family protein	NA	NA	NA	NA	NA
WP_005793715.1|2817786_2821020_-	S41 family peptidase	NA	NA	NA	NA	NA
WP_005793713.1|2821517_2821934_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005793712.1|2821939_2823169_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005793710.1|2823775_2824903_-	hypothetical protein	NA	O64086	Bacillus_phage	30.8	9.0e-32
WP_005793707.1|2824938_2825256_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005793705.1|2825380_2825830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005793703.1|2825826_2826222_-	peptidase M15	NA	H2A0C2	Bacteroides_phage	61.8	2.9e-38
WP_005793701.1|2826218_2826677_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_005793697.1|2826884_2830859_-	hypothetical protein	NA	R9ZXB1	Cellulophaga_phage	34.8	1.0e-05
WP_005793696.1|2830845_2832927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005793695.1|2832923_2835137_-	hypothetical protein	NA	R9ZYD7	Cellulophaga_phage	45.4	4.7e-08
WP_011202871.1|2835129_2835384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005793692.1|2835422_2835764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005793690.1|2835822_2836305_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_164927375.1|2836301_2836700_-	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_011202873.1|2836714_2837353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011202874.1|2837356_2837695_-|head	phage head closure protein	head	NA	NA	NA	NA
WP_011202875.1|2837691_2838030_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_011202876.1|2838099_2839296_-|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
>prophage 3
NC_006347	Bacteroides fragilis YCH46, complete genome	5277274	3380416	3439222	5277274	protease,integrase,transposase	unidentified_phage(22.22%)	49	3420756:3420770	3440734:3440748
WP_005788738.1|3380416_3382123_-|protease	serine protease	protease	NA	NA	NA	NA
WP_005788741.1|3382143_3382884_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_011203085.1|3382944_3384630_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_005788745.1|3384633_3385827_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	31.5	3.4e-37
WP_005788747.1|3385829_3386603_-	3'-5' exonuclease	NA	A0A1B0WLV5	Flavobacterium_phage	41.1	5.4e-44
WP_005788748.1|3386733_3387858_-	DNA polymerase III subunit beta	NA	NA	NA	NA	NA
WP_005788752.1|3388010_3388385_+	DUF3127 domain-containing protein	NA	NA	NA	NA	NA
WP_011203086.1|3388462_3390100_-	DUF3352 domain-containing protein	NA	NA	NA	NA	NA
WP_011203087.1|3390192_3390951_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005788761.1|3391011_3392010_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_008769737.1|3392029_3392884_-	DUF4348 domain-containing protein	NA	NA	NA	NA	NA
WP_005788767.1|3392979_3393933_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_011203088.1|3394069_3395257_+	glycine C-acetyltransferase	NA	D2TEZ5	Emiliania_huxleyi_virus	26.3	2.5e-32
WP_005788775.1|3395305_3395710_+	DUF2721 domain-containing protein	NA	NA	NA	NA	NA
WP_011203089.1|3395849_3396761_-	DUF4906 domain-containing protein	NA	NA	NA	NA	NA
WP_011203090.1|3396878_3397925_-	BF2992 family fimbrillin-A clan protein	NA	NA	NA	NA	NA
WP_011203091.1|3397938_3400062_-	fimbrillin family protein	NA	NA	NA	NA	NA
WP_011203092.1|3400096_3401122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011203093.1|3401257_3402811_-	Mfa1 family fimbria major subunit	NA	NA	NA	NA	NA
WP_011203094.1|3402797_3403850_-	FimB/Mfa2 family fimbrial subunit	NA	NA	NA	NA	NA
WP_011203095.1|3404029_3405691_-	Mfa1 family fimbria major subunit	NA	NA	NA	NA	NA
WP_011203096.1|3405716_3407120_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011203097.1|3407128_3407686_-	DUF3575 domain-containing protein	NA	NA	NA	NA	NA
WP_005815229.1|3407722_3408097_-	hypothetical protein	NA	NA	NA	NA	NA
WP_193345514.1|3408487_3408841_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_011203099.1|3408957_3410187_+|integrase	site-specific integrase	integrase	H7BUI8	unidentified_phage	31.8	2.2e-23
WP_004311260.1|3410206_3411418_+|integrase	site-specific integrase	integrase	H7BUI8	unidentified_phage	27.4	8.8e-17
WP_004311261.1|3411482_3411776_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_083810220.1|3411788_3411992_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011203101.1|3412653_3416463_+	class I SAM-dependent DNA methyltransferase	NA	A0A1B1IUC6	uncultured_Mediterranean_phage	26.3	2.7e-11
WP_005680425.1|3417403_3418012_-	master DNA invertase Mpi family serine-type recombinase	NA	H2A0H0	Bacteroides_phage	70.1	3.6e-67
WP_004297199.1|3419475_3420501_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
3420756:3420770	attL	TTTTTTACCGTTTCT	NA	NA	NA	NA
WP_015547183.1|3421364_3421598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011203107.1|3421594_3422524_-	amidoligase family protein	NA	A0A1B1IN52	uncultured_Mediterranean_phage	36.5	2.8e-31
WP_004329591.1|3422670_3423459_-	ParA family protein	NA	NA	NA	NA	NA
WP_004329592.1|3423486_3423873_-	DUF3408 domain-containing protein	NA	NA	NA	NA	NA
WP_004329593.1|3423902_3424319_-	DUF3408 domain-containing protein	NA	NA	NA	NA	NA
WP_011203108.1|3424517_3424727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004289236.1|3425674_3426241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004289235.1|3426237_3426996_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	27.1	4.5e-11
WP_011203111.1|3426992_3427973_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_011203112.1|3427973_3429113_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004311295.1|3429124_3431203_-	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA	NA
WP_004293828.1|3431221_3432322_-	YncE family protein	NA	NA	NA	NA	NA
WP_004311297.1|3432350_3434441_-	lipoprotein	NA	NA	NA	NA	NA
WP_004293827.1|3434455_3436237_-	cell surface protein	NA	NA	NA	NA	NA
WP_007567599.1|3436301_3437219_-	DUF4465 domain-containing protein	NA	NA	NA	NA	NA
WP_004289226.1|3437952_3438282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011203113.1|3438328_3439222_-|integrase	phage integrase SAM-like domain-containing protein	integrase	NA	NA	NA	NA
3440734:3440748	attR	AGAAACGGTAAAAAA	NA	NA	NA	NA
>prophage 4
NC_006347	Bacteroides fragilis YCH46, complete genome	5277274	4801040	4875567	5277274	transposase,integrase,tRNA	Pseudomonas_phage(28.57%)	57	4865071:4865086	4884205:4884220
WP_005791502.1|4801040_4802558_-|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_005791499.1|4802652_4804710_+	HDIG domain-containing protein	NA	NA	NA	NA	NA
WP_011203605.1|4804684_4805158_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_005797616.1|4805272_4807072_-	DUF4091 domain-containing protein	NA	NA	NA	NA	NA
WP_011203607.1|4807113_4809573_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_011203608.1|4809647_4810226_-	porin family protein	NA	NA	NA	NA	NA
WP_011203609.1|4810906_4812067_-	6-bladed beta-propeller	NA	NA	NA	NA	NA
WP_005791488.1|4812213_4813647_-	aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_005791486.1|4813965_4815276_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA	NA
WP_005791484.1|4815321_4816380_+	L-asparaginase 2	NA	NA	NA	NA	NA
WP_005814336.1|4816412_4817600_+	OprO/OprP family phosphate-selective porin	NA	NA	NA	NA	NA
WP_005822162.1|4818115_4819114_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_005811423.1|4820228_4820486_+	restriction endonuclease subunit M	NA	NA	NA	NA	NA
WP_011203610.1|4820552_4821368_+	N-6 DNA methylase	NA	NA	NA	NA	NA
WP_005811425.1|4821371_4821782_+	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_005811426.1|4821768_4822119_+	DUF1016 family protein	NA	NA	NA	NA	NA
WP_005811427.1|4822136_4822277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011203611.1|4822288_4822774_+	DUF1016 family protein	NA	Q9JMP5	Wolbachia_phage	36.9	1.7e-11
WP_011203614.1|4823405_4823828_+	tyrosine recombinase	NA	NA	NA	NA	NA
WP_005822166.1|4823860_4824514_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B0WMK0	Flavobacterium_phage	35.4	8.4e-14
WP_005811434.1|4824739_4824919_+	membrane protein	NA	NA	NA	NA	NA
WP_011203615.1|4825347_4825590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005822168.1|4825772_4826183_+	excisionase family DNA-binding protein	NA	NA	NA	NA	NA
WP_011203616.1|4826152_4826875_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_004319780.1|4831158_4831515_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_004312010.1|4831518_4831884_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_004312011.1|4831959_4833633_+|transposase	IS66-like element ISBf10 family transposase	transposase	A0A218MNE7	uncultured_virus	28.9	2.1e-37
WP_011203617.1|4834013_4834613_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_011203618.1|4834581_4836141_-|transposase	IS21-like element ISBf2 family transposase	transposase	NA	NA	NA	NA
WP_005822175.1|4836371_4838006_+	exo-alpha-sialidase	NA	NA	NA	NA	NA
WP_011203619.1|4838188_4839820_+|transposase	IS1182-like element ISBf5 family transposase	transposase	Q9MBP7	Staphylococcus_prophage	33.5	2.7e-69
WP_005822181.1|4840628_4841867_+	MFS transporter	NA	NA	NA	NA	NA
WP_005811457.1|4841963_4843103_+	cyclically-permuted mutarotase family protein	NA	NA	NA	NA	NA
WP_005822182.1|4843370_4846616_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010993680.1|4846630_4848247_+	RagB/SusD family nutrient uptake outer membrane protein	NA	NA	NA	NA	NA
WP_005798047.1|4848334_4849168_+	glycoside hydrolase family 16 protein	NA	NA	NA	NA	NA
WP_005822184.1|4849424_4851785_+	family 20 glycosylhydrolase	NA	A0A2H4UUW7	Bodo_saltans_virus	30.7	4.4e-12
WP_005822185.1|4851815_4852676_+	glycoside hydrolase family 16 protein	NA	NA	NA	NA	NA
WP_005811467.1|4853820_4855695_+	beta-galactosidase	NA	NA	NA	NA	NA
WP_011203621.1|4855923_4858920_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_011203622.1|4858939_4860544_+	RagB/SusD family nutrient uptake outer membrane protein	NA	NA	NA	NA	NA
WP_005822191.1|4861327_4862695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005811475.1|4862691_4863747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004308130.1|4864596_4864947_+	reverse transcriptase N-terminal domain-containing protein	NA	A0A0U4J920	Pseudomonas_phage	51.2	1.4e-23
WP_008775183.1|4864924_4865122_+	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	61.5	1.0e-15
4865071:4865086	attL	TAAGGGTTGTTTTGAT	NA	NA	NA	NA
WP_011203625.1|4865242_4865533_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005811477.1|4865768_4865906_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005811479.1|4865961_4866336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005811481.1|4866420_4866792_+	DUF4373 domain-containing protein	NA	NA	NA	NA	NA
WP_005811483.1|4866811_4867030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005811493.1|4867302_4868577_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_011203628.1|4868708_4870250_-	plasmid recombination protein	NA	NA	NA	NA	NA
WP_005822199.1|4870400_4871429_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011203629.1|4871421_4872921_-	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
WP_005811501.1|4872913_4873246_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005811504.1|4873478_4874147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005822203.1|4874208_4875567_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
4884205:4884220	attR	ATCAAAACAACCCTTA	NA	NA	NA	NA
