The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_012490	Rhodococcus erythropolis PR4, complete genome	6516310	2445428	2460760	6516310	holin	Gordonia_phage(22.22%)	13	NA	NA
WP_041814854.1|2445428_2445665_+	hypothetical protein	NA	A0A1B3AYT5	Gordonia_phage	61.6	1.3e-17
WP_020907147.1|2445730_2446978_-	Fic family protein	NA	NA	NA	NA	NA
WP_041814856.1|2447221_2448220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020907149.1|2448276_2450244_-	hypothetical protein	NA	Q5ZGD1	Flavobacterium_phage	37.3	6.4e-17
WP_041814859.1|2450247_2450592_-	hypothetical protein	NA	G9FHA2	Rhodococcus_phage	46.3	8.6e-18
WP_041814860.1|2450579_2450984_-	hypothetical protein	NA	G9FHA1	Rhodococcus_phage	59.1	2.6e-34
WP_020907152.1|2451011_2451239_-|holin	holin	holin	NA	NA	NA	NA
WP_041815813.1|2451365_2452139_-	peptidoglycan-binding protein	NA	A0A142K908	Gordonia_phage	64.0	4.2e-57
WP_020907154.1|2452164_2453031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020907155.1|2453030_2453474_-	DUF2744 domain-containing protein	NA	A0A220NQQ4	Corynebacterium_phage	38.3	7.4e-14
WP_020907156.1|2453475_2455158_-	hypothetical protein	NA	A0A220NQQ5	Corynebacterium_phage	47.0	9.9e-160
WP_050768587.1|2455154_2456036_-	hypothetical protein	NA	G9FHK7	Rhodococcus_virus	29.1	4.9e-25
WP_148209229.1|2456032_2460760_-	tape measure protein	NA	A0A2H4JDP5	uncultured_Caudovirales_phage	46.7	7.7e-234
>prophage 2
NC_012490	Rhodococcus erythropolis PR4, complete genome	6516310	2480470	2486430	6516310		Rhodococcus_phage(66.67%)	13	NA	NA
WP_020907187.1|2480470_2481094_-	hypothetical protein	NA	G9FH01	Rhodococcus_phage	51.9	8.2e-51
WP_020907188.1|2481093_2481924_-	YqaJ viral recombinase family protein	NA	G9FH00	Rhodococcus_phage	79.2	3.0e-125
WP_158304204.1|2481920_2482073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020907190.1|2482185_2482461_-	hypothetical protein	NA	A0A1C9EI31	Gordonia_phage	42.9	1.2e-14
WP_020907191.1|2482457_2482649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020907192.1|2482645_2484187_-	DNA cytosine methyltransferase	NA	A0A0K1Y7T4	Mycobacterium_phage	57.5	4.7e-164
WP_020907193.1|2484183_2484471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020907194.1|2484467_2484635_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020907195.1|2484631_2484985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020907196.1|2485105_2485291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020907197.1|2485358_2485526_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_041814877.1|2485543_2485777_-	helix-turn-helix domain-containing protein	NA	G9FGY4	Rhodococcus_phage	52.2	4.7e-12
WP_020907198.1|2485923_2486430_+	HTH domain-containing protein	NA	G9FGY3	Rhodococcus_phage	44.7	2.6e-23
>prophage 3
NC_012490	Rhodococcus erythropolis PR4, complete genome	6516310	2536012	2542337	6516310		Lactobacillus_phage(16.67%)	7	NA	NA
WP_019747884.1|2536012_2536579_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	33.9	7.3e-06
WP_020907231.1|2536651_2537479_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_019747886.1|2537770_2538001_+	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	64.0	1.5e-21
WP_003944767.1|2538083_2538563_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A217ER62	Bacillus_phage	30.1	4.5e-09
WP_086935732.1|2538544_2540704_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	51.2	6.9e-206
WP_003944744.1|2540779_2541745_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0N7CCA3	Skermania_phage	86.8	7.7e-157
WP_019747889.1|2541863_2542337_-	NUDIX domain-containing protein	NA	D0R7J3	Paenibacillus_phage	31.2	6.7e-13
>prophage 4
NC_012490	Rhodococcus erythropolis PR4, complete genome	6516310	2700814	2717088	6516310	protease,tail,head,capsid,portal	Bacillus_phage(20.0%)	17	NA	NA
WP_020907343.1|2700814_2702134_+|portal	phage portal protein	portal	A0A0K1LLE7	Bacillus_phage	29.1	1.9e-25
WP_158304209.1|2702316_2702931_+|capsid	minor capsid protein	capsid	NA	NA	NA	NA
WP_050768593.1|2703244_2703724_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_041814935.1|2703667_2704540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020907346.1|2704623_2705505_+|head,protease	HK97 family phage prohead protease	head,protease	Q6JIM8	Burkholderia_virus	28.9	4.6e-07
WP_020907347.1|2705537_2706632_+|capsid	phage major capsid protein	capsid	X2KQ31	Campylobacter_phage	29.0	6.5e-19
WP_041814936.1|2706631_2706832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020907348.1|2706896_2707487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041814938.1|2707549_2707795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020907350.1|2707794_2708262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020907351.1|2708254_2708728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158304210.1|2708732_2708900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148209199.1|2708886_2709849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020907354.1|2710551_2713260_+	tape measure protein	NA	A0A0A7RUN0	Clostridium_phage	40.0	4.1e-06
WP_020907355.1|2713259_2714030_+|tail	phage tail family protein	tail	NA	NA	NA	NA
WP_020907356.1|2714104_2714512_+	hypothetical protein	NA	A0A0U1UNR7	Pseudomonas_phage	47.4	2.8e-28
WP_020907357.1|2714523_2717088_+|tail	phage tail protein	tail	NA	NA	NA	NA
>prophage 1
NC_007491	Rhodococcus erythropolis PR4 plasmid pREL1, complete sequence	271577	150830	158418	271577		uncultured_Caudovirales_phage(28.57%)	10	NA	NA
WP_003944624.1|150830_151958_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4SNR3	Cyanophage	28.7	4.6e-20
WP_003944613.1|152189_152882_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011331629.1|152878_153550_+	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	38.5	8.3e-09
WP_003944646.1|153586_153913_+	DUF3349 domain-containing protein	NA	NA	NA	NA	NA
WP_037131620.1|153937_154321_+	helix-turn-helix transcriptional regulator	NA	A0A218MNF3	uncultured_virus	53.1	1.6e-12
WP_003944591.1|154317_155406_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA	NA
WP_003944644.1|155402_155819_+	arsenate reductase ArsC	NA	A0A2H4PQT9	Staphylococcus_phage	36.5	2.0e-13
WP_003944628.1|155860_156847_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	51.8	1.2e-75
WP_003944607.1|156874_157282_+	low molecular weight phosphatase family protein	NA	A0A2H4PQT9	Staphylococcus_phage	37.0	9.8e-13
WP_003944597.1|157335_158418_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4J2Q2	uncultured_Caudovirales_phage	48.0	2.9e-59
>prophage 2
NC_007491	Rhodococcus erythropolis PR4 plasmid pREL1, complete sequence	271577	172994	257214	271577	integrase,transposase	Acidithiobacillus_phage(15.38%)	70	172757:172797	243113:243129
172757:172797	attL	ACAGACAGGCCAACCGAGCCTTACATCTGGCCGTCATCAGC	NA	NA	NA	NA
WP_011331613.1|172994_173240_+|transposase	transposase	transposase	NA	NA	NA	NA
172757:172797	attL	ACAGACAGGCCAACCGAGCCTTACATCTGGCCGTCATCAGC	NA	NA	NA	NA
WP_158304188.1|174615_174786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011331611.1|176206_176335_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_011331610.1|176371_176563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011331609.1|176668_178072_-	triacylglycerol lipase	NA	NA	NA	NA	NA
WP_158304189.1|180091_180226_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011331604.1|180345_180699_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_148209138.1|180579_181308_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_050768550.1|182589_182925_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_011331600.1|183441_183882_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021334707.1|184570_184738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011331594.1|186492_186810_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011331593.1|186838_188461_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_011331592.1|188474_189179_-	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	41.8	8.4e-36
WP_011331532.1|190963_192505_+|transposase	IS21-like element IS1415 family transposase	transposase	NA	NA	NA	NA
WP_011331533.1|192504_193296_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	27.0	1.7e-13
WP_011331585.1|193910_194222_-|transposase	transposase	transposase	NA	NA	NA	NA
193410:193450	attR	GCTGATGACGGCCAGATGTAAGGCTCGGTTGGCCTGTCTGT	NA	NA	NA	NA
WP_041814210.1|194345_198236_-	WD40 repeat domain-containing protein	NA	NA	NA	NA	NA
193410:193450	attR	GCTGATGACGGCCAGATGTAAGGCTCGGTTGGCCTGTCTGT	NA	NA	NA	NA
WP_050768544.1|198314_198671_-|transposase	transposase	transposase	A0A2P1JR32	Mycobacterium_phage	51.0	1.4e-18
WP_011331582.1|198995_199232_-	DUF2892 domain-containing protein	NA	NA	NA	NA	NA
WP_011331581.1|199368_201549_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_011331580.1|201664_201928_+	metal-sensitive transcriptional regulator	NA	NA	NA	NA	NA
WP_011331579.1|201955_202492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011331578.1|202488_203694_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011331577.1|204278_205673_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_011331576.1|206257_207046_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011331575.1|207074_207413_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_011331574.1|207414_208257_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_011331573.1|208339_210106_+	cytochrome c oxidase subunit I	NA	R9VX24	Flavobacterium_phage	39.2	4.7e-11
WP_134771772.1|210102_210603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148209139.1|211245_211929_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_011331569.1|212103_212319_+	DUF2892 domain-containing protein	NA	NA	NA	NA	NA
WP_041814246.1|212347_213400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011331567.1|213517_213925_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_011331566.1|214004_214505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011331565.1|214610_215345_+	thioredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_011331564.1|215353_216202_+	thiol-disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_011331563.1|216192_216540_-	DsrE family protein	NA	NA	NA	NA	NA
WP_011331561.1|217449_217887_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	S5WIU1	Leptospira_phage	36.4	1.7e-07
WP_011331560.1|217913_218039_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_011331559.1|217984_218254_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_134771776.1|218296_218440_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_011331556.1|219164_219686_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_011331555.1|219711_221289_-	MFS transporter	NA	NA	NA	NA	NA
WP_011331554.1|221409_222057_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011331553.1|222409_222634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011331552.1|223143_223752_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011331542.1|229022_229433_+	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA	NA
WP_030538000.1|229499_231116_+	fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	25.8	9.0e-17
WP_011331540.1|231158_232265_+	NDMA-dependent alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	28.3	9.4e-34
WP_011331539.1|232571_233969_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_011331538.1|234318_234639_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_021334602.1|234665_236054_+	cytochrome P450	NA	NA	NA	NA	NA
WP_011331536.1|236050_237253_+	FAD-dependent oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.4	5.9e-05
WP_011331535.1|237571_238636_+	BtrH N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_134771775.1|239003_239495_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_011331533.1|239881_240673_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	27.0	1.7e-13
WP_011331532.1|240672_242214_-|transposase	IS21-like element IS1415 family transposase	transposase	NA	NA	NA	NA
WP_011331529.1|244685_245915_-|transposase	IS110 family transposase	transposase	A0A1X9I5Z0	Streptococcus_phage	25.3	9.3e-06
WP_011331528.1|246282_247110_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	38.2	8.9e-45
WP_021334594.1|247191_247518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011331526.1|248243_249557_+|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	48.8	3.1e-108
WP_011331525.1|250205_251351_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_021334590.1|251500_252178_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_021334589.1|252183_252708_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_158304190.1|252855_253416_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_011331521.1|253611_254286_-	transglutaminase domain-containing protein	NA	NA	NA	NA	NA
WP_011331520.1|254282_255365_-	BtrH N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_050768548.1|255763_256675_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_011331517.1|256914_257214_+|transposase	transposase	transposase	A0A1B3AZE5	Gordonia_phage	64.2	1.8e-24
