The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_007350	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292, complete genome	2516575	1005301	1019529	2516575		Staphylococcus_phage(92.31%)	17	NA	NA
WP_041784790.1|1005301_1006684_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	61.3	5.3e-167
WP_011302825.1|1006703_1007708_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	49.4	2.9e-90
WP_011302826.1|1007697_1007949_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	81.1	4.2e-30
WP_011302827.1|1008008_1008485_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	53.5	4.8e-43
WP_011302828.1|1008468_1009260_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	71.8	6.4e-101
WP_011302829.1|1009355_1010945_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	81.8	8.5e-262
WP_011302830.1|1011333_1012530_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	86.6	1.8e-195
WP_011302831.1|1012628_1013537_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	75.8	1.1e-101
WP_011302832.1|1013706_1014543_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	68.2	4.2e-111
WP_011302833.1|1014813_1015170_-	CrcB family protein	NA	NA	NA	NA	NA
WP_011302834.1|1015166_1015532_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	62.8	3.3e-36
WP_011302835.1|1015742_1016048_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011302836.1|1016332_1017046_+	transaldolase	NA	E3SKN5	Synechococcus_phage	36.3	2.9e-20
WP_172606398.1|1017580_1018063_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_011302838.1|1018162_1018612_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	47.5	1.3e-21
WP_011302839.1|1018619_1019045_-	competence protein ComK	NA	NA	NA	NA	NA
WP_011302840.1|1019058_1019529_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	43.7	2.9e-24
>prophage 2
NC_007350	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292, complete genome	2516575	1023975	1041063	2516575	tRNA	Staphylococcus_phage(100.0%)	15	NA	NA
WP_011302847.1|1023975_1025442_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	58.6	5.5e-13
WP_011302848.1|1025983_1027027_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	64.4	1.0e-130
WP_011302849.1|1027033_1027666_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	64.8	5.0e-72
WP_011302850.1|1027677_1028859_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	71.2	4.2e-165
WP_002482978.1|1028872_1029331_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	76.3	6.6e-58
WP_011302851.1|1029595_1030597_-	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	68.5	7.3e-126
WP_011302852.1|1030863_1031688_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011302853.1|1031923_1032880_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_002482982.1|1033031_1033433_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011302854.1|1033551_1034112_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	63.8	9.5e-67
WP_011302855.1|1034108_1035062_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	83.3	7.3e-67
WP_011302856.1|1035171_1036341_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	77.4	2.0e-167
WP_011302857.1|1036869_1039284_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	85.6	0.0e+00
WP_002482987.1|1039302_1039614_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.9	4.5e-34
WP_011302858.1|1039794_1041063_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	77.2	1.5e-38
>prophage 3
NC_007350	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292, complete genome	2516575	1162756	1171882	2516575	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_002483095.1|1162756_1163761_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.9	1.7e-05
WP_011302949.1|1163763_1164789_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_011302950.1|1164809_1165955_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.0	2.5e-85
WP_011302951.1|1165970_1166231_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	44.1	7.4e-06
WP_011302952.1|1166613_1168890_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.6	1.7e-29
WP_011302953.1|1169071_1171351_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.4	3.8e-69
WP_002483102.1|1171363_1171882_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.2	6.6e-30
>prophage 4
NC_007350	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292, complete genome	2516575	1298186	1308154	2516575		uncultured_Mediterranean_phage(28.57%)	11	NA	NA
WP_002483230.1|1298186_1299074_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.4	5.1e-38
WP_011303058.1|1299142_1299649_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_011303059.1|1299740_1300475_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	23.5	1.4e-09
WP_002483233.1|1300458_1301007_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	31.4	2.1e-10
WP_002483234.1|1300999_1301737_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_011303060.1|1301863_1302589_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	42.6	1.1e-46
WP_041784899.1|1302572_1304336_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	23.8	1.7e-21
WP_037538408.1|1304763_1305309_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_002483238.1|1305464_1305713_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	4.9e-15
WP_011303062.1|1305822_1306782_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011303063.1|1306774_1308154_+	ATP-dependent DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	32.4	7.1e-55
>prophage 5
NC_007350	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292, complete genome	2516575	1786524	1794999	2516575		Synechococcus_phage(16.67%)	9	NA	NA
WP_011303433.1|1786524_1787091_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	38.2	9.7e-27
WP_011303434.1|1787093_1788122_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.5	4.6e-67
WP_011303435.1|1788114_1789602_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.6e-44
WP_011303436.1|1789580_1791770_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.6	1.4e-137
WP_011303437.1|1791762_1792434_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_011303438.1|1792433_1792694_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_011303439.1|1792696_1793398_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D7SE76	Cyanophage	42.5	6.8e-46
WP_011303440.1|1793402_1794530_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_011303441.1|1794516_1794999_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.0	2.6e-20
>prophage 6
NC_007350	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292, complete genome	2516575	1991153	1998892	2516575	terminase	uncultured_Caudovirales_phage(85.71%)	10	NA	NA
WP_011303596.1|1991153_1991609_-	FosB/FosD family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	63.3	2.0e-38
WP_011303598.1|1992965_1993358_-	YolD-like family protein	NA	A0A2H4JEH6	uncultured_Caudovirales_phage	85.2	6.0e-60
WP_011303599.1|1993752_1994100_-	hypothetical protein	NA	A0A2H4JEH8	uncultured_Caudovirales_phage	38.1	2.1e-11
WP_011303600.1|1994092_1994419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011303601.1|1994415_1994952_-	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	53.1	3.4e-45
WP_011303602.1|1994969_1995230_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011303603.1|1995296_1995803_-|terminase	phage terminase small subunit P27 family	terminase	A0A2H4J4D1	uncultured_Caudovirales_phage	63.6	1.1e-48
WP_077461048.1|1995808_1996222_-	DUF3102 domain-containing protein	NA	A0A2H4J577	uncultured_Caudovirales_phage	55.8	1.1e-19
WP_011303606.1|1997785_1998241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011303607.1|1998253_1998892_-	hypothetical protein	NA	A0A2H4JFF8	uncultured_Caudovirales_phage	54.2	4.0e-53
>prophage 7
NC_007350	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292, complete genome	2516575	2047261	2065991	2516575		uncultured_Caudovirales_phage(33.33%)	14	NA	NA
WP_011303647.1|2047261_2048230_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.3	2.6e-136
WP_002483928.1|2048643_2049612_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	94.4	2.2e-175
WP_011303648.1|2049735_2051841_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	89.9	0.0e+00
WP_002483930.1|2051803_2052202_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	76.5	8.6e-54
WP_011303649.1|2052928_2053816_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002483932.1|2053829_2054330_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	72.3	2.0e-52
WP_011303650.1|2054512_2056027_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	35.8	9.5e-69
WP_011303651.1|2056397_2057903_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	6.3e-65
WP_011303653.1|2058372_2059320_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	23.6	1.5e-11
WP_002483937.1|2059490_2060039_-	5'-3'-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	39.0	2.0e-29
WP_011303654.1|2060216_2061272_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	27.2	2.3e-21
WP_002483939.1|2061430_2062948_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_011303655.1|2062944_2063907_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.5	4.8e-26
WP_011303656.1|2064212_2065991_-	DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	36.8	5.9e-78
>prophage 8
NC_007350	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292, complete genome	2516575	2074294	2081844	2516575		Pandoravirus(16.67%)	9	NA	NA
WP_011303663.1|2074294_2075437_-	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	36.7	5.4e-24
WP_011303664.1|2075420_2076014_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	41.5	1.9e-36
WP_002483950.1|2076269_2076941_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	54.9	1.2e-63
WP_011303665.1|2076942_2077368_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_002483952.1|2077360_2078077_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.4	2.5e-51
WP_011303666.1|2078317_2078911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002483954.1|2078979_2079231_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_011303667.1|2079448_2080510_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	42.3	8.7e-61
WP_002483956.1|2081004_2081844_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	40.2	1.2e-52
