assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000010145.1_ASM1014v1	NC_010610	Lactobacillus fermentum IFO 3956, complete genome	1	285836-285924	1	CRISPRCasFinder	no	cas14j	cas14j,cas3,DEDDh,cse2gr11,cas7,cas5,cas6e,cas1,WYL,cas2,csa3,DinG,cas4,cas8c	Unclear	GAGCCTCCAGCGGGTGAATGGGATGGTG	28	0	0	NA	NA	NA	1	1	TypeV	cas14j,cas3,DEDDh,cse2gr11,cas7,cas5,cas6e,cas1,WYL,cas2,csa3,DinG,cas4,cas8c	NA|171aa|up_6|NC_010610.1_280135_280648_+,NA|107aa|up_5|NC_010610.1_280806_281127_+,NA|71aa|up_0|NC_010610.1_285331_285544_-,NA|170aa|down_0|NC_010610.1_286073_286583_-,NA|112aa|down_1|NC_010610.1_286597_286933_-,NA|117aa|down_2|NC_010610.1_286946_287297_-,NA|68aa|down_5|NC_010610.1_290073_290277_-,NA|50aa|down_6|NC_010610.1_290397_290547_-	NA|294aa|up_9|NC_010610.1_269379_270261_+	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|334aa|up_8|NC_010610.1_270349_271351_+	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|498aa|up_7|NC_010610.1_271366_272860_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|171aa|up_6|NC_010610.1_280135_280648_+	NA	NA|107aa|up_5|NC_010610.1_280806_281127_+	NA	NA|255aa|up_4|NC_010610.1_281847_282612_+	pfam10479, FSA_C, Fragile site-associated protein C-terminus	NA|110aa|up_3|NC_010610.1_282797_283127_+	pfam13240, zinc_ribbon_2, zinc-ribbon domain	NA|105aa|up_2|NC_010610.1_283138_283453_+	pfam13248, zf-ribbon_3, zinc-ribbon domain	NA|123aa|up_1|NC_010610.1_284747_285116_-	TIGR01637, Putative_autolysin_regulatory_protein_ArpU, phage transcriptional regulator, ArpU family	NA|71aa|up_0|NC_010610.1_285331_285544_-	NA	NA|170aa|down_0|NC_010610.1_286073_286583_-	NA	NA|112aa|down_1|NC_010610.1_286597_286933_-	NA	NA|117aa|down_2|NC_010610.1_286946_287297_-	NA	NA|527aa|down_3|NC_010610.1_287601_289182_-	COG3378, COG3378, Phage associated DNA primase [General function prediction only]	NA|275aa|down_4|NC_010610.1_289236_290061_-	cd04859, Prim_Pol, Prim_Pol: Primase-polymerase (primpol) domain of the type found in bifunctional replicases from archaeal plasmids, including ORF904 protein of the crenarchaeal plasmid pRN1 from Sulfolobus islandicus (pRN1 primpol)	NA|68aa|down_5|NC_010610.1_290073_290277_-	NA	NA|50aa|down_6|NC_010610.1_290397_290547_-	NA	NA|89aa|down_7|NC_010610.1_290719_290986_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|62aa|down_8|NC_010610.1_290997_291183_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|371aa|down_9|NC_010610.1_291299_292412_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_000010145.1_ASM1014v1	NC_010610	Lactobacillus fermentum IFO 3956, complete genome	2	816914-818164	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cse2gr11,cas7,cas5,cas6e,cas1	cas14j,cas3,DEDDh,cse2gr11,cas7,cas5,cas6e,cas1,WYL,cas2,csa3,DinG,cas4,cas8c	Type I-E	GTATTCCCCATGTATGTGGGGGTGATCC,GTATTCCCCATGTATGTGGGGGTGATCCT,GTATTCCCCATGTATGTGGGGGTGATCCT	28,29,29	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	20,20,20	20	TypeI-E	cas14j,cas3,DEDDh,cse2gr11,cas7,cas5,cas6e,cas1,WYL,cas2,csa3,DinG,cas4,cas8c	NA,NA|121aa|down_2|NC_010610.1_822806_823169_+,NA|107aa|down_5|NC_010610.1_825046_825367_-	NA|96aa|up_9|NC_010610.1_803259_803547_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|293aa|up_8|NC_010610.1_803570_804449_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas3|908aa|up_7|NC_010610.1_805002_807726_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|396aa|up_6|NC_010610.1_807927_809115_+	pfam00872, Transposase_mut, Transposase, Mutator family	cse2gr11|198aa|up_5|NC_010610.1_810792_811386_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|361aa|up_4|NC_010610.1_811412_812495_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|236aa|up_3|NC_010610.1_812475_813183_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|214aa|up_2|NC_010610.1_813200_813842_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|314aa|up_1|NC_010610.1_813855_814797_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	NA|339aa|up_0|NC_010610.1_815612_816629_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|407aa|down_0|NC_010610.1_818215_819436_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|407aa|down_1|NC_010610.1_821034_822255_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|121aa|down_2|NC_010610.1_822806_823169_+	NA	NA|231aa|down_3|NC_010610.1_823363_824056_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|317aa|down_4|NC_010610.1_823980_824931_+	pfam00665, rve, Integrase core domain	NA|107aa|down_5|NC_010610.1_825046_825367_-	NA	NA|408aa|down_6|NC_010610.1_825495_826719_+	pfam04087, DUF389, Domain of unknown function (DUF389)	NA|445aa|down_7|NC_010610.1_826740_828075_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|230aa|down_8|NC_010610.1_828164_828854_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|390aa|down_9|NC_010610.1_829092_830262_+	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade
GCF_000010145.1_ASM1014v1	NC_010610	Lactobacillus fermentum IFO 3956, complete genome	3	819535-820967	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cse2gr11,cas7,cas5,cas6e,cas1	cas14j,cas3,DEDDh,cse2gr11,cas7,cas5,cas6e,cas1,WYL,cas2,csa3,DinG,cas4,cas8c	Type I-E	GTATTCCCCATGTATGTGGGGGTGATCC,GTATTCCCCATGTATGTGGGGGTGATCCT,GTATTCCCCATGTATGTGGGGGTGATCCT	28,29,29	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	23,23,23	23	TypeI-E	cas14j,cas3,DEDDh,cse2gr11,cas7,cas5,cas6e,cas1,WYL,cas2,csa3,DinG,cas4,cas8c	NA,NA|121aa|down_1|NC_010610.1_822806_823169_+,NA|107aa|down_4|NC_010610.1_825046_825367_-	NA|293aa|up_9|NC_010610.1_803570_804449_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas3|908aa|up_8|NC_010610.1_805002_807726_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|396aa|up_7|NC_010610.1_807927_809115_+	pfam00872, Transposase_mut, Transposase, Mutator family	cse2gr11|198aa|up_6|NC_010610.1_810792_811386_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|361aa|up_5|NC_010610.1_811412_812495_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|236aa|up_4|NC_010610.1_812475_813183_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|214aa|up_3|NC_010610.1_813200_813842_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|314aa|up_2|NC_010610.1_813855_814797_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	NA|339aa|up_1|NC_010610.1_815612_816629_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|407aa|up_0|NC_010610.1_818215_819436_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|407aa|down_0|NC_010610.1_821034_822255_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|121aa|down_1|NC_010610.1_822806_823169_+	NA	NA|231aa|down_2|NC_010610.1_823363_824056_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|317aa|down_3|NC_010610.1_823980_824931_+	pfam00665, rve, Integrase core domain	NA|107aa|down_4|NC_010610.1_825046_825367_-	NA	NA|408aa|down_5|NC_010610.1_825495_826719_+	pfam04087, DUF389, Domain of unknown function (DUF389)	NA|445aa|down_6|NC_010610.1_826740_828075_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|230aa|down_7|NC_010610.1_828164_828854_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|390aa|down_8|NC_010610.1_829092_830262_+	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade	NA|209aa|down_9|NC_010610.1_830610_831237_-	PRK00215, PRK00215, transcriptional repressor LexA
GCF_000010145.1_ASM1014v1	NC_010610	Lactobacillus fermentum IFO 3956, complete genome	4	880230-880350	4	CRISPRCasFinder	no		cas14j,cas3,DEDDh,cse2gr11,cas7,cas5,cas6e,cas1,WYL,cas2,csa3,DinG,cas4,cas8c	Orphan	TAGAGACTCTGATTTAGTATAATTAATGAAGTAAATTGGAGGATC	45	1	10	880275-880305|880275-880305|880275-880305|880275-880305|880275-880305|880275-880305|880275-880305|880275-880305|880275-880305|880275-880305	NC_010610.1_801255-801225|NC_010610.1_803179-803209|NC_010610.1_1346677-1346707|NC_010610.1_1392187-1392217|NC_010610.1_1404711-1404681|NC_010610.1_1600766-1600796|NC_010610.1_1614913-1614883|NC_010610.1_1662446-1662476|NC_010610.1_1776423-1776393|NC_010610.1_1615170-1615140	NA	1	1	Orphan	cas14j,cas3,DEDDh,cse2gr11,cas7,cas5,cas6e,cas1,WYL,cas2,csa3,DinG,cas4,cas8c	NA|106aa|up_6|NC_010610.1_871315_871633_+,NA|122aa|down_2|NC_010610.1_882385_882751_-	NA|446aa|up_9|NC_010610.1_865703_867041_-	cd17313, MFS_SLC45_SUC, Solute carrier family 45 and similar sugar transporters of the Major Facilitator Superfamily of transporters	NA|565aa|up_8|NC_010610.1_867049_868744_-	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|329aa|up_7|NC_010610.1_868901_869888_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|106aa|up_6|NC_010610.1_871315_871633_+	NA	NA|391aa|up_5|NC_010610.1_871785_872958_+	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase	NA|321aa|up_4|NC_010610.1_874611_875574_+	COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism]	NA|118aa|up_3|NC_010610.1_875919_876273_-	pfam06993, DUF1304, Protein of unknown function (DUF1304)	NA|204aa|up_2|NC_010610.1_876285_876897_-	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|443aa|up_1|NC_010610.1_877071_878400_-	PRK02991, PRK02991, D-serine dehydratase; Provisional	NA|467aa|up_0|NC_010610.1_878689_880090_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|96aa|down_0|NC_010610.1_880355_880643_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|293aa|down_1|NC_010610.1_880666_881545_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|122aa|down_2|NC_010610.1_882385_882751_-	NA	NA|349aa|down_3|NC_010610.1_882876_883923_+	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|196aa|down_4|NC_010610.1_883933_884521_+	PRK14162, PRK14162, heat shock protein GrpE; Provisional	NA|619aa|down_5|NC_010610.1_884558_886415_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|387aa|down_6|NC_010610.1_886526_887687_+	PRK14276, PRK14276, chaperone protein DnaJ; Provisional	NA|183aa|down_7|NC_010610.1_888092_888641_+	PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|56aa|down_8|NC_010610.1_888668_888836_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|189aa|down_9|NC_010610.1_888854_889421_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional
GCF_000010145.1_ASM1014v1	NC_010610	Lactobacillus fermentum IFO 3956, complete genome	5	1393493-1393734	3,3,5	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas14j,cas3,DEDDh,cse2gr11,cas7,cas5,cas6e,cas1,WYL,cas2,csa3,DinG,cas4,cas8c	 Type I-U?,Type I-U,Type I-C	ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC,ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC,ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGACC	35,35,36	0	0	NA	NA	I-C:I-C:I-C	3,2,2	3	TypeI-U?,TypeI-U,TypeI-C	cas14j,cas3,DEDDh,cse2gr11,cas7,cas5,cas6e,cas1,WYL,cas2,csa3,DinG,cas4,cas8c	NA,NA	NA|147aa|up_9|NC_010610.1_1381104_1381545_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|458aa|up_8|NC_010610.1_1381595_1382969_-	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]	NA|269aa|up_7|NC_010610.1_1383097_1383904_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|306aa|up_6|NC_010610.1_1384135_1385053_-	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|1060aa|up_5|NC_010610.1_1385065_1388245_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|361aa|up_4|NC_010610.1_1388244_1389327_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|430aa|up_3|NC_010610.1_1389328_1390618_-	PRK09357, pyrC, dihydroorotase; Validated	NA|322aa|up_2|NC_010610.1_1390617_1391583_-	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|96aa|up_1|NC_010610.1_1392267_1392555_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|293aa|up_0|NC_010610.1_1392578_1393457_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|97aa|down_0|NC_010610.1_1393891_1394182_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|NC_010610.1_1394191_1395223_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|219aa|down_2|NC_010610.1_1395219_1395876_-	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas7|293aa|down_3|NC_010610.1_1395879_1396758_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|634aa|down_4|NC_010610.1_1396779_1398681_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|247aa|down_5|NC_010610.1_1398677_1399418_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	NA|407aa|down_6|NC_010610.1_1399483_1400704_-	pfam00872, Transposase_mut, Transposase, Mutator family	cas3|813aa|down_7|NC_010610.1_1400769_1403208_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|293aa|down_8|NC_010610.1_1403440_1404319_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|96aa|down_9|NC_010610.1_1404342_1404630_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
