assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000010205.1_ASM1020v1	NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	1	124013-124107	1	CRISPRCasFinder	no	RT	RT,DEDDh	Unclear	CTTCAGCTTTACCTTCAGCTTTA	23	1	2	124036-124084|124036-124084	NC_010793.1_336355-336307|NC_010793.1_923996-924044	NA	1	1	Orphan	RT,DEDDh	NA|806aa|up_8|NC_010793.1_106159_108577_+,NA|48aa|up_2|NC_010793.1_117705_117849_+,NA|94aa|down_4|NC_010793.1_127586_127868_-,NA|59aa|down_5|NC_010793.1_127996_128173_-,NA|364aa|down_9|NC_010793.1_132922_134014_-	NA|110aa|up_9|NC_010793.1_105091_105421_+	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|806aa|up_8|NC_010793.1_106159_108577_+	NA	NA|289aa|up_7|NC_010793.1_109257_110124_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|349aa|up_6|NC_010793.1_111217_112264_+	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|328aa|up_5|NC_010793.1_112273_113257_-	pfam04754, Transposase_31, Putative transposase, YhgA-like	NA|368aa|up_4|NC_010793.1_113308_114412_-	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI	NA|152aa|up_3|NC_010793.1_117166_117622_+	pfam06412, TraD, Conjugal transfer protein TraD	NA|48aa|up_2|NC_010793.1_117705_117849_+	NA	NA|95aa|up_1|NC_010793.1_117945_118230_+	sd00006, TPR, Tetratricopeptide repeat	NA|1146aa|up_0|NC_010793.1_119301_122739_+	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain	NA|196aa|down_0|NC_010793.1_124968_125556_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|165aa|down_1|NC_010793.1_125597_126092_-	smart00387, HATPase_c, Histidine kinase-like ATPases	NA|156aa|down_2|NC_010793.1_126110_126578_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|158aa|down_3|NC_010793.1_127071_127545_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|94aa|down_4|NC_010793.1_127586_127868_-	NA	NA|59aa|down_5|NC_010793.1_127996_128173_-	NA	RT|380aa|down_6|NC_010793.1_128797_129937_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|315aa|down_7|NC_010793.1_131026_131971_-	pfam06834, TraU, TraU protein	NA|205aa|down_8|NC_010793.1_132008_132623_-	TIGR02743, hypothetical_protein, type-F conjugative transfer system protein TraW	NA|364aa|down_9|NC_010793.1_132922_134014_-	NA
GCF_000010205.1_ASM1020v1	NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	2	420562-420699	1	CRT	no		RT,DEDDh	Orphan	AGCTGAAGGCAGAGCTGA	18	3	67	420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420580-420597|420616-420645|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681|420664-420681	NC_010793.1_420556-420573|NC_010793.1_420688-420705|NC_010793.1_1168910-1168927|NC_010793.1_1168922-1168939|NC_010793.1_1168934-1168951|NC_010793.1_1168946-1168963|NC_010793.1_1168958-1168975|NC_010793.1_1168970-1168987|NC_010793.1_1357572-1357589|NC_010793.1_1357584-1357601|NC_010793.1_1357596-1357613|NC_010793.1_1470538-1470521|NC_010793.1_1513248-1513265|NC_010793.1_1513260-1513277|NC_010793.1_1513272-1513289|NC_010793.1_1513284-1513301|NC_010793.1_1513296-1513313|NC_010793.1_1513308-1513325|NC_010793.1_1513320-1513337|NC_010793.1_1513332-1513349|NC_010793.1_1513344-1513361|NC_010793.1_1470598-1470581|NC_010793.1_1642973-1642956|NC_010793.1_1642985-1642968|NC_010793.1_1642997-1642980|NC_010793.1_112418-112401|NC_010793.1_112466-112449|NC_010793.1_915089-915072|NC_010793.1_1122770-1122787|NC_010793.1_1357560-1357577|NC_010793.1_1643009-1642992|NC_010793.1_1865379-1865362|NC_010793.1_1937486-1937503|NC_010793.1_1470574-1470545|NC_010793.1_420556-420573|NC_010793.1_420688-420705|NC_010793.1_1168910-1168927|NC_010793.1_1168922-1168939|NC_010793.1_1168934-1168951|NC_010793.1_1168946-1168963|NC_010793.1_1168958-1168975|NC_010793.1_1168970-1168987|NC_010793.1_1357572-1357589|NC_010793.1_1357584-1357601|NC_010793.1_1357596-1357613|NC_010793.1_1470538-1470521|NC_010793.1_1513248-1513265|NC_010793.1_1513260-1513277|NC_010793.1_1513272-1513289|NC_010793.1_1513284-1513301|NC_010793.1_1513296-1513313|NC_010793.1_1513308-1513325|NC_010793.1_1513320-1513337|NC_010793.1_1513332-1513349|NC_010793.1_1513344-1513361|NC_010793.1_1470598-1470581|NC_010793.1_1642973-1642956|NC_010793.1_1642985-1642968|NC_010793.1_1642997-1642980|NC_010793.1_112418-112401|NC_010793.1_112466-112449|NC_010793.1_915089-915072|NC_010793.1_1122770-1122787|NC_010793.1_1357560-1357577|NC_010793.1_1643009-1642992|NC_010793.1_1865379-1865362|NC_010793.1_1937486-1937503	NA	3	3	Orphan	RT,DEDDh	NA,NA|107aa|down_8|NC_010793.1_434979_435300_-	NA|75aa|up_9|NC_010793.1_400961_401186_-	PRK07558, PRK07558, F0F1 ATP synthase subunit C; Validated	NA|243aa|up_8|NC_010793.1_401241_401970_-	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated	NA|225aa|up_7|NC_010793.1_403316_403991_+	pfam02592, Vut_1, Putative vitamin uptake transporter	NA|902aa|up_6|NC_010793.1_405183_407889_-	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional	NA|29aa|up_5|NC_010793.1_408472_408559_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|262aa|up_4|NC_010793.1_412408_413194_+	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|152aa|up_3|NC_010793.1_413235_413691_-	pfam06412, TraD, Conjugal transfer protein TraD	NA|275aa|up_2|NC_010793.1_415995_416820_+	pfam13362, Toprim_3, Toprim domain	NA|556aa|up_1|NC_010793.1_416848_418516_-	PHA03100, PHA03100, ankyrin repeat protein; Provisional	NA|373aa|up_0|NC_010793.1_418664_419783_+	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI	NA|585aa|down_0|NC_010793.1_420841_422596_-	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|380aa|down_1|NC_010793.1_422601_423741_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|776aa|down_2|NC_010793.1_423749_426077_-	pfam07916, TraG_N, TraG-like protein, N-terminal region	NA|323aa|down_3|NC_010793.1_426159_427128_-	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|112aa|down_4|NC_010793.1_427298_427634_-	pfam07916, TraG_N, TraG-like protein, N-terminal region	NA|434aa|down_5|NC_010793.1_427633_428935_-	pfam06122, TraH, Conjugative relaxosome accessory transposon protein	NA|107aa|down_6|NC_010793.1_431320_431641_-	pfam09673, TrbC_Ftype, Type-F conjugative transfer system pilin assembly protein	NA|347aa|down_7|NC_010793.1_432773_433814_+	PHA02878, PHA02878, ankyrin repeat protein; Provisional	NA|107aa|down_8|NC_010793.1_434979_435300_-	NA	NA|443aa|down_9|NC_010793.1_435299_436628_-	cd16430, TraB, TraB is a homolog of VirB10 which forms part of core complex in Type IV secretion system (T4SS)
GCF_000010205.1_ASM1020v1	NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	3	853026-853104	2	CRISPRCasFinder	no		RT,DEDDh	Orphan	CAAACTTCATTGTAATTGACTATA	24	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh	NA|46aa|up_2|NC_010793.1_846086_846224_-,NA|70aa|down_9|NC_010793.1_867599_867809_+	NA|250aa|up_9|NC_010793.1_839630_840380_-	TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB	NA|119aa|up_8|NC_010793.1_840672_841029_+	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|91aa|up_7|NC_010793.1_841110_841383_+	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|172aa|up_6|NC_010793.1_841425_841941_+	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|492aa|up_5|NC_010793.1_842107_843583_+	pfam03219, TLC, TLC ATP/ADP transporter	NA|157aa|up_4|NC_010793.1_844948_845419_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|142aa|up_3|NC_010793.1_845427_845853_-	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|46aa|up_2|NC_010793.1_846086_846224_-	NA	NA|448aa|up_1|NC_010793.1_849422_850766_+	pfam10871, DUF2748, Protein of unknown function (DUF2748)	NA|370aa|up_0|NC_010793.1_850999_852109_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|289aa|down_0|NC_010793.1_856365_857233_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|491aa|down_1|NC_010793.1_858708_860181_-	PRK06589, PRK06589, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|497aa|down_2|NC_010793.1_860190_861681_-	PRK06591, PRK06591, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|134aa|down_3|NC_010793.1_861673_862075_-	PRK07375, PRK07375, Na+/H+ antiporter subunit C	NA|145aa|down_4|NC_010793.1_862052_862487_-	PRK12507, PRK12507, putative monovalent cation/H+ antiporter subunit B; Reviewed	NA|197aa|down_5|NC_010793.1_862507_863098_-	PRK12507, PRK12507, putative monovalent cation/H+ antiporter subunit B; Reviewed	NA|110aa|down_6|NC_010793.1_863094_863424_-	PRK12670, PRK12670, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|287aa|down_7|NC_010793.1_863976_864837_-	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily	NA|802aa|down_8|NC_010793.1_864971_867377_+	PRK14939, gyrB, DNA gyrase subunit B; Provisional	NA|70aa|down_9|NC_010793.1_867599_867809_+	NA
GCF_000010205.1_ASM1020v1	NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	4	1357483-1357553	3	CRISPRCasFinder	no		RT,DEDDh	Orphan	GATGAAGGTATAGAGATTGGTGA	23	1	1	1357506-1357530	NC_010793.1_112472-112448	NA	1	1	Orphan	RT,DEDDh	NA|462aa|up_7|NC_010793.1_1344114_1345500_-,NA|342aa|down_0|NC_010793.1_1358959_1359985_+,NA|195aa|down_2|NC_010793.1_1360632_1361217_+	NA|339aa|up_9|NC_010793.1_1342261_1343278_+	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|302aa|up_8|NC_010793.1_1343274_1344180_+	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]	NA|462aa|up_7|NC_010793.1_1344114_1345500_-	NA	NA|789aa|up_6|NC_010793.1_1345499_1347866_-	PRK06599, PRK06599, DNA topoisomerase I; Validated	NA|319aa|up_5|NC_010793.1_1347958_1348915_-	cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins	NA|165aa|up_4|NC_010793.1_1349134_1349629_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|844aa|up_3|NC_010793.1_1349797_1352329_+	pfam13502, AsmA_2, AsmA-like C-terminal region	NA|308aa|up_2|NC_010793.1_1352543_1353467_-	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|182aa|up_1|NC_010793.1_1353463_1354009_-	PRK00150, def, peptide deformylase; Reviewed	NA|365aa|up_0|NC_010793.1_1355574_1356669_+	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI	NA|342aa|down_0|NC_010793.1_1358959_1359985_+	NA	NA|76aa|down_1|NC_010793.1_1360183_1360411_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|195aa|down_2|NC_010793.1_1360632_1361217_+	NA	NA|518aa|down_3|NC_010793.1_1361243_1362797_-	PRK10788, PRK10788, periplasmic folding chaperone; Provisional	NA|250aa|down_4|NC_010793.1_1362876_1363626_+	cd00311, TIM, Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate	NA|98aa|down_5|NC_010793.1_1363631_1363925_+	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|527aa|down_6|NC_010793.1_1364688_1366269_-	PRK00750, lysK, lysyl-tRNA synthetase; Reviewed	NA|183aa|down_7|NC_010793.1_1366407_1366956_+	pfam02600, DsbB, Disulfide bond formation protein DsbB	NA|182aa|down_8|NC_010793.1_1366918_1367464_+	cd01042, DMQH, Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain	NA|231aa|down_9|NC_010793.1_1367564_1368257_+	PRK05305, PRK05305, phosphatidylserine decarboxylase family protein
GCF_000010205.1_ASM1020v1	NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	5	1746144-1746238	4	CRISPRCasFinder	no		RT,DEDDh	Orphan	CCTTCAGCTTTACCTTCAGCTTT	23	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh	NA|110aa|up_9|NC_010793.1_1730789_1731119_+,NA|68aa|up_7|NC_010793.1_1734331_1734535_+,NA|183aa|down_4|NC_010793.1_1750584_1751133_-,NA|368aa|down_7|NC_010793.1_1753487_1754591_-	NA|110aa|up_9|NC_010793.1_1730789_1731119_+	NA	NA|220aa|up_8|NC_010793.1_1733585_1734245_+	TIGR02743, hypothetical_protein, type-F conjugative transfer system protein TraW	NA|68aa|up_7|NC_010793.1_1734331_1734535_+	NA	NA|326aa|up_6|NC_010793.1_1734535_1735513_+	pfam06834, TraU, TraU protein	NA|128aa|up_5|NC_010793.1_1735535_1735919_+	pfam09673, TrbC_Ftype, Type-F conjugative transfer system pilin assembly protein	NA|564aa|up_4|NC_010793.1_1735915_1737607_+	pfam06986, TraN, Type-1V conjugative transfer system mating pair stabilisation	NA|233aa|up_3|NC_010793.1_1737603_1738302_+	pfam13728, TraF, F plasmid transfer operon protein	NA|289aa|up_2|NC_010793.1_1739378_1740246_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|112aa|up_1|NC_010793.1_1740567_1740903_+	pfam07916, TraG_N, TraG-like protein, N-terminal region	NA|323aa|up_0|NC_010793.1_1741073_1742042_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|192aa|down_0|NC_010793.1_1747112_1747688_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|286aa|down_1|NC_010793.1_1747788_1748646_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|243aa|down_2|NC_010793.1_1748667_1749396_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|270aa|down_3|NC_010793.1_1749771_1750581_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|183aa|down_4|NC_010793.1_1750584_1751133_-	NA	NA|198aa|down_5|NC_010793.1_1751180_1751774_-	sd00045, ANK, ankyrin repeats	NA|479aa|down_6|NC_010793.1_1752042_1753479_-	PRK09165, PRK09165, replicative DNA helicase; Provisional	NA|368aa|down_7|NC_010793.1_1753487_1754591_-	NA	NA|232aa|down_8|NC_010793.1_1754756_1755452_-	pfam06122, TraH, Conjugative relaxosome accessory transposon protein	NA|131aa|down_9|NC_010793.1_1755630_1756023_-	pfam13356, Arm-DNA-bind_3, Arm DNA-binding domain
