The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	2008987	10342	64986	2008987	protease,integrase,tRNA,transposase	Thermus_phage(25.0%)	43	50943:50968	66288:66313
WP_012460730.1|10342_11644_+|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_012460731.1|11871_13125_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.6	2.0e-120
WP_012460732.1|13330_13900_+	elongation factor P	NA	NA	NA	NA	NA
WP_012460733.1|13896_14682_+	extragenic suppressor protein SuhB	NA	NA	NA	NA	NA
WP_041621705.1|14701_15403_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_012460736.1|16646_17726_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_012460737.1|17929_18949_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_012460738.1|18945_19866_+	GTPase Era	NA	NA	NA	NA	NA
WP_012460739.1|20253_20619_-	membrane protein	NA	NA	NA	NA	NA
WP_012460740.1|20715_20922_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_012460741.1|21204_21732_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_012460742.1|22156_22960_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012460743.1|22966_23818_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_012460744.1|23881_24373_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_012460745.1|24385_27853_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	24.6	1.1e-06
WP_012460746.1|28030_29230_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
WP_012460747.1|29282_30491_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	K4JS34	Caulobacter_phage	30.9	6.1e-34
WP_012460748.1|30487_31384_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012460749.1|31919_32228_+	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_012460750.1|32410_33286_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012460751.1|33414_34236_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_148141108.1|34305_35646_+	DNA recombination protein RmuC	NA	NA	NA	NA	NA
WP_012460753.1|35755_36817_+|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_012460754.1|36829_39148_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_012460755.1|39170_39497_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	45.5	5.8e-16
WP_011944475.1|40729_40855_+	50S ribosomal protein L36	NA	NA	NA	NA	NA
WP_155367736.1|43411_43555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012460759.1|44401_44929_+	PRANC domain-containing protein	NA	A0A1V0QGP6	Shearwaterpox_virus	28.5	2.7e-10
WP_080503920.1|45884_46067_-	conjugal transfer protein TraB	NA	NA	NA	NA	NA
WP_012460762.1|46096_46414_-	conjugative transfer protein	NA	NA	NA	NA	NA
WP_041621571.1|46413_46749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158296904.1|47923_48100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012460766.1|50400_50523_+	DNA helicase	NA	NA	NA	NA	NA
50943:50968	attL	ACCTCTTTCGAAACTGGTTAAGGTAG	NA	NA	NA	NA
WP_012460767.1|51564_52014_-	ribose 5-phosphate isomerase B	NA	NA	NA	NA	NA
WP_012460768.1|52307_52847_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012460772.1|54829_55864_-	ankyrin repeat domain-containing protein	NA	A0A068EGQ7	Pigeonpox_virus	26.6	2.4e-07
WP_012460827.1|56556_57525_-|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_012460775.1|57735_58197_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_012460776.1|58206_59799_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_041621572.1|62400_62706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012460783.1|62758_63145_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012460827.1|63411_64380_+|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_012460784.1|64395_64986_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
66288:66313	attR	ACCTCTTTCGAAACTGGTTAAGGTAG	NA	NA	NA	NA
>prophage 2
NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	2008987	102141	183085	2008987	tRNA,transposase	Salmonella_phage(18.18%)	49	NA	NA
WP_012460827.1|102141_103110_+|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_162465509.1|104716_105031_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_012460832.1|105091_105421_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_148141062.1|106159_108577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012460834.1|109257_110124_+|transposase	IS630 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	28.8	1.1e-21
WP_080503970.1|111217_112264_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_012460838.1|112273_113257_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_080503896.1|113308_114412_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_012460842.1|117166_117622_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_155367766.1|117705_117849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012460843.1|117945_118230_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_012460845.1|119301_122739_+	response regulator	NA	Q8QKV7	Ectocarpus_siliculosus_virus	22.7	1.0e-09
WP_012460847.1|123908_124847_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	63.7	6.5e-84
WP_012460848.1|124968_125556_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	J9Q7H7	Salmonella_phage	34.1	1.1e-07
WP_012460849.1|125597_126092_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_050731378.1|126110_126578_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_012460851.1|127071_127545_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_012460852.1|127586_127868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080946937.1|127996_128173_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_012460855.1|128797_129937_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_012460856.1|131026_131971_-	TraU family protein	NA	NA	NA	NA	NA
WP_012460857.1|132008_132623_-	conjugative transfer protein	NA	NA	NA	NA	NA
WP_012460858.1|132922_134014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041621579.1|134166_136143_-	TraC family protein	NA	NA	NA	NA	NA
WP_012460860.1|136123_136453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012460861.1|136452_136635_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012460862.1|136664_136982_-	conjugative transfer protein	NA	NA	NA	NA	NA
WP_012460863.1|137624_138764_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_012460866.1|140644_141232_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	J9Q7H7	Salmonella_phage	32.6	5.8e-06
WP_041621580.1|142834_143611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041621581.1|144026_144209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012460871.1|144256_144901_-	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	30.8	1.1e-13
WP_012460872.1|144938_145490_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A292GI44	Xanthomonas_phage	33.8	3.4e-08
WP_012460879.1|150403_151798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148141109.1|151905_152127_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_012460880.1|152845_156073_+	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	27.5	2.9e-22
WP_012460882.1|158056_159064_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_012460884.1|160183_161632_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.7	1.8e-72
WP_080503973.1|161640_162138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050731337.1|163892_164084_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109455804.1|164257_164776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012460888.1|166061_166856_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_012460889.1|167150_167657_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_158296906.1|168480_168759_+	MobA/MobL family protein	NA	NA	NA	NA	NA
WP_012460896.1|173875_174331_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_012460897.1|174372_175158_-	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	29.5	2.0e-17
WP_012460899.1|178714_179137_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_148141111.1|179741_181364_+	RNA-binding protein	NA	NA	NA	NA	NA
WP_050731379.1|182374_183085_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	2008987	284983	336482	2008987	integrase,transposase	Streptococcus_phage(16.67%)	39	286993:287052	350632:350704
WP_012460986.1|284983_285757_+|integrase	integrase family protein	integrase	NA	NA	NA	NA
WP_012460987.1|285781_286228_+|integrase	site-specific integrase	integrase	A0A0R6PGY7	Moraxella_phage	30.6	3.0e-07
286993:287052	attL	TATAGATACCGTGATAAGAATCAAGAAAAGAAATAATAATTTTATAAAAAAGATGTAAGT	NA	NA	NA	NA
WP_012460827.1|287065_288034_-|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_012460989.1|288280_289216_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_012460990.1|289649_290294_-	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	32.4	1.4e-13
WP_012460992.1|291137_292586_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	35.7	1.3e-70
WP_012460994.1|294485_296513_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_041621593.1|297284_301553_+	(p)ppGpp synthetase	NA	NA	NA	NA	NA
WP_012460996.1|301993_303985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012460997.1|304276_304579_+	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_012460998.1|304679_305744_+	rod shape-determining protein	NA	NA	NA	NA	NA
WP_012460999.1|305750_306602_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_012461000.1|307355_308624_+	ankyrin repeat domain-containing protein	NA	A0A2H4X242	Flamingopox_virus	36.1	1.9e-17
WP_012461001.1|309140_309386_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_080503904.1|310371_310566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461002.1|310741_312502_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_012461003.1|312609_314079_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_012461004.1|314219_315797_-	GHKL domain-containing protein	NA	W8CYF6	Bacillus_phage	24.4	1.6e-05
WP_012461005.1|316463_318512_-	ComEC/Rec2 family competence protein	NA	NA	NA	NA	NA
WP_148141068.1|318668_319445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461007.1|320344_320842_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012460783.1|322561_322948_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012461010.1|323000_323306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012460817.1|323734_324037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080503905.1|324228_324714_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_012461012.1|324922_326638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461013.1|326646_328083_+	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	37.3	1.6e-70
WP_041621594.1|328316_328892_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A292GI44	Xanthomonas_phage	29.8	2.3e-07
WP_012461015.1|329026_329575_+	ankyrin repeat domain-containing protein	NA	K7Y837	Megavirus	34.7	8.3e-15
WP_012461016.1|329621_330170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461017.1|330173_330983_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.7	2.2e-19
WP_012461018.1|331349_331628_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461019.1|331692_332394_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_012460852.1|332522_332804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012460851.1|332845_333319_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_050731378.1|333812_334280_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_012460849.1|334298_334793_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_012460848.1|334834_335422_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	J9Q7H7	Salmonella_phage	34.1	1.1e-07
WP_012460847.1|335543_336482_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	63.7	6.5e-84
350632:350704	attR	TATAGATACCGTGATAAGAATCAAGAAAAGAAATAATAATTTTATAAAAAAGATGTAAGTTTTTATAAAATTA	NA	NA	NA	NA
>prophage 4
NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	2008987	350128	427128	2008987	protease,tRNA,transposase	Thermus_phage(21.43%)	47	NA	NA
WP_012461028.1|350128_350689_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_012460827.1|350704_351673_-|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_012460914.1|351843_352179_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012460863.1|353893_355033_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_012461030.1|355572_355854_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461031.1|355857_356670_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	30.3	3.6e-30
WP_012461032.1|357140_359009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461034.1|359694_360441_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_012461035.1|360445_360844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461036.1|360864_361443_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	B3FJI5	Pseudomonas_phage	40.0	5.7e-06
WP_148141070.1|361505_362373_+|transposase	IS630 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	29.4	1.4e-21
WP_012461039.1|362528_363467_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	60.6	1.3e-84
WP_012461040.1|363534_363990_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_158296908.1|367146_367305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461051.1|372385_373846_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_012461052.1|373848_375327_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_012461053.1|375326_375626_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_050731342.1|375708_377445_-	ribonuclease J	NA	NA	NA	NA	NA
WP_012461055.1|377559_378297_-	response regulator transcription factor	NA	A0A0K0PVG9	Roseobacter_phage	57.7	1.5e-14
WP_158296909.1|381678_381813_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041621747.1|384849_385644_+	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_011944867.1|387625_388246_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	59.3	1.3e-59
WP_080503907.1|389133_389319_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_012461061.1|389630_390506_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_080503908.1|390526_390766_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_012461062.1|391150_391984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461063.1|392118_393786_+	energy-dependent translational throttle protein EttA	NA	A0A2K9L3Z8	Tupanvirus	28.3	4.7e-45
WP_012461064.1|393818_394190_+	DUF2672 domain-containing protein	NA	NA	NA	NA	NA
WP_012461065.1|394280_396569_+	DNA translocase FtsK 4TM domain-containing protein	NA	A0A218M9A2	Mycobacterium_phage	43.0	3.9e-74
WP_012460827.1|397179_398148_+|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_012461068.1|399979_400444_-	ATP synthase B chain precursor	NA	NA	NA	NA	NA
WP_012461069.1|400456_400954_-	ATP synthase subunit B	NA	NA	NA	NA	NA
WP_011944645.1|400961_401186_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_012461070.1|401241_401970_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_012461071.1|403316_403991_+	queuosine precursor transporter	NA	NA	NA	NA	NA
WP_012461072.1|405183_407889_-	pyruvate, phosphate dikinase	NA	H8YJB7	Vibrio_phage	32.7	6.0e-58
WP_080503910.1|408472_408559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012460897.1|412408_413194_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	29.5	2.0e-17
WP_012460896.1|413235_413691_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_012461075.1|415995_416820_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_148141071.1|416848_418516_-	ankyrin repeat domain-containing protein	NA	Q6VZY0	Canarypox_virus	28.9	2.8e-05
WP_012461077.1|418664_419783_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_012461078.1|419767_420832_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_012461079.1|420841_422596_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_012461080.1|422601_423741_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_012461081.1|423749_426077_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012460827.1|426159_427128_-|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
>prophage 5
NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	2008987	440440	516367	2008987	integrase,portal,tRNA,transposase	uncultured_Mediterranean_phage(18.75%)	55	477587:477605	516091:516109
WP_148141072.1|440440_440683_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_012461098.1|441093_441975_-	ParB/RepB/Spo0J family partition protein	NA	S5VTK0	Leptospira_phage	29.6	2.1e-12
WP_012461099.1|441986_442784_-	AAA family ATPase	NA	A0A240F4U1	Ochrobactrum_phage	32.4	1.7e-16
WP_041621753.1|442790_443357_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_011944753.1|443532_444300_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	38.7	8.0e-32
WP_012461101.1|444277_445567_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.7	1.4e-100
WP_012461102.1|445568_446426_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA	NA
WP_012461103.1|446792_448325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461104.1|448377_451047_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	23.7	1.1e-24
WP_012461105.1|451125_452052_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	37.9	1.7e-36
WP_050731345.1|453981_454284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461108.1|454470_454731_-	peptide chain release factor RF-2	NA	NA	NA	NA	NA
WP_012461109.1|454855_455599_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_012461111.1|456994_457852_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_012461112.1|457873_458602_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_012461113.1|459502_461008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158296910.1|461251_461428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461115.1|462953_463997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148141073.1|464382_464571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041621604.1|464636_464840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045916282.1|465654_465861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461117.1|466556_467531_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.4e-84
WP_012461118.1|467652_467808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461119.1|467847_468240_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1X9SH80	Bradyrhizobium_phage	37.5	6.6e-06
WP_012460827.1|468366_469335_-|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_012461120.1|469505_470021_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_012461121.1|470039_470504_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_148141115.1|471270_471714_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_070105175.1|471953_472463_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_012461125.1|473118_474555_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	37.2	4.6e-73
WP_012461126.1|475773_476955_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	22.0	5.2e-14
477587:477605	attL	AACGCCAGATTAGGATAAG	NA	NA	NA	NA
WP_012461129.1|480119_480446_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_148141074.1|480606_481695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461131.1|482166_482853_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_012461132.1|484503_486066_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_011945001.1|486244_486484_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012461133.1|486909_487176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461134.1|487194_488385_-|portal	phage portal protein	portal	W8ECU7	Geobacillus_phage	37.1	2.4e-59
WP_012461135.1|488518_490306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076611195.1|495139_496006_+|transposase	IS630-like element ISOt3 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	29.0	5.0e-22
WP_012461148.1|500002_501142_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_012460817.1|502334_502637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_173024091.1|502921_503080_+	conjugal transfer protein TraB	NA	NA	NA	NA	NA
WP_012462300.1|503129_503312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012460821.1|503311_503641_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461150.1|503621_505409_+	TraC family protein	NA	NA	NA	NA	NA
WP_173024092.1|505322_506363_-	ankyrin repeat domain-containing protein	NA	Q6VZX8	Canarypox_virus	31.8	7.6e-09
WP_012460921.1|507495_507816_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_012461083.1|510201_511503_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
WP_012461082.1|511502_511838_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012460827.1|512008_512977_+|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_012460784.1|512992_513583_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_041621607.1|514490_515081_+	phospholipase D family protein	NA	A0A1B2LRT6	Wolbachia_phage	48.9	1.3e-26
WP_041621608.1|515130_515349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461153.1|516166_516367_+|transposase	transposase	transposase	NA	NA	NA	NA
516091:516109	attR	CTTATCCTAATCTGGCGTT	NA	NA	NA	NA
>prophage 6
NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	2008987	559782	639855	2008987	tRNA,transposase	Bodo_saltans_virus(23.53%)	58	NA	NA
WP_076611195.1|559782_560650_-|transposase	IS630-like element ISOt3 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	29.0	5.0e-22
WP_041621612.1|561720_562200_+	tryptophan-rich sensory protein	NA	A0A1V0S976	Catovirus	37.4	1.5e-15
WP_050731349.1|563266_563797_+	ester cyclase	NA	NA	NA	NA	NA
WP_012461198.1|563875_564589_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_012461199.1|564557_565460_-	phosphotransferase	NA	NA	NA	NA	NA
WP_012461203.1|570503_570959_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_012461204.1|571026_571953_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	61.1	1.5e-85
WP_012461205.1|572073_572229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461119.1|572268_572661_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1X9SH80	Bradyrhizobium_phage	37.5	6.6e-06
WP_012461206.1|572702_573197_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_012461207.1|573215_573677_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_012461208.1|573737_574148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461209.1|574155_574644_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_012461211.1|575307_575862_+	EF-hand domain-containing protein	NA	NA	NA	NA	NA
WP_012461212.1|576003_576777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461214.1|577960_579676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_173024094.1|581414_581756_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_012461219.1|581775_583629_-	Fe-S protein assembly chaperone HscA	NA	A0A2P1ELQ7	Moumouvirus	34.0	1.1e-69
WP_012461220.1|583615_584119_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_012461221.1|584131_584506_-	iron-sulfur cluster assembly accessory protein	NA	A0A1B1IT29	uncultured_Mediterranean_phage	33.3	3.8e-11
WP_012461222.1|584515_584941_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	73.8	2.4e-46
WP_012461223.1|584980_586252_-	IscS subfamily cysteine desulfurase	NA	H7BUW1	unidentified_phage	39.3	1.0e-36
WP_012461224.1|586266_587553_-	cysteine desulfurase	NA	H7BUW1	unidentified_phage	37.8	1.9e-30
WP_012461225.1|587564_588011_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_012461226.1|588214_588916_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_012461227.1|589209_590457_+	cell division protein FtsA	NA	NA	NA	NA	NA
WP_012461228.1|590435_591746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461229.1|591730_593482_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_173024088.1|594358_594496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148141078.1|595504_596833_-	malate dehydrogenase	NA	NA	NA	NA	NA
WP_012461233.1|596825_597752_-	AEC family transporter	NA	NA	NA	NA	NA
WP_012461234.1|598060_598660_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461235.1|598788_599100_+	citrate synthase	NA	NA	NA	NA	NA
WP_012461236.1|599096_599852_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_012461238.1|600209_600614_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_012461239.1|600610_602047_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_041621614.1|602392_603544_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_012461241.1|603567_604335_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_012461242.1|604731_606729_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	33.3	9.8e-05
WP_012461243.1|606770_607709_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_012461246.1|612351_613386_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	40.7	2.4e-31
WP_012461247.1|613382_615824_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_012461248.1|615910_616840_-	translation elongation factor Ts	NA	NA	NA	NA	NA
WP_041621781.1|616836_617697_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_012461250.1|618041_618893_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_012461251.1|618876_620529_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	34.8	4.2e-46
WP_080503912.1|620723_620870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461252.1|621329_622814_-	ankyrin repeat domain-containing protein	NA	A0A1V0S7Q4	Shearwaterpox_virus	27.2	3.7e-09
WP_012460827.1|624368_625337_+|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_012461254.1|625824_627336_+	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA	NA
WP_076611195.1|628913_629781_-|transposase	IS630-like element ISOt3 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	29.0	5.0e-22
WP_012461259.1|631069_631432_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_012461260.1|631462_634003_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	27.6	8.0e-28
WP_012461261.1|634252_635755_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_012461262.1|635773_636256_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_012461263.1|636793_637567_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_012461264.1|637563_638952_+	2-polyprenylphenol 6-hydroxylase	NA	A0A0R6PKQ6	Moraxella_phage	25.9	2.9e-32
WP_148141079.1|639033_639855_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	2008987	645408	690458	2008987	transposase	Thermus_phage(33.33%)	32	NA	NA
WP_012461268.1|645408_646014_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_080503914.1|647960_648104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461269.1|648275_650138_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA	NA
WP_012461270.1|650127_651396_-	DUF21 domain-containing protein	NA	NA	NA	NA	NA
WP_155367740.1|652656_652827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461272.1|652926_653568_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	30.7	1.2e-25
WP_012461273.1|653608_656500_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_012461274.1|656499_657777_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_012461275.1|657782_659261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461276.1|659553_660855_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	27.7	5.0e-34
WP_012461277.1|660921_661260_+	YraN family protein	NA	NA	NA	NA	NA
WP_012461278.1|661648_662473_-	cytochrome c oxidase subunit 3	NA	NA	NA	NA	NA
WP_012461279.1|662654_663632_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	1.6e-05
WP_012461280.1|663631_664249_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_012461281.1|664492_666634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461282.1|667001_668207_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_041621616.1|668608_668788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158296912.1|668848_669019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012460827.1|669034_670003_-|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_158296913.1|670225_670507_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_012461283.1|670925_674363_+	response regulator	NA	Q8QKV7	Ectocarpus_siliculosus_virus	22.4	3.0e-09
WP_012461148.1|676831_677971_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_012460862.1|678612_678930_+	conjugative transfer protein	NA	NA	NA	NA	NA
WP_012460861.1|678959_679142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012460860.1|679141_679471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012460827.1|682780_683749_-|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_012461290.1|684527_685319_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_012461291.1|685428_686022_+	DUF4065 domain-containing protein	NA	I6R0L8	Salmonella_phage	39.7	2.6e-22
WP_012460827.1|686192_687161_+|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_012460909.1|687176_687737_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_012461292.1|687788_688907_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_076611195.1|689591_690458_+|transposase	IS630-like element ISOt3 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	29.0	5.0e-22
>prophage 8
NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	2008987	795293	891633	2008987	integrase,tRNA,transposase	Bacillus_phage(14.29%)	58	794116:794175	871142:871246
794116:794175	attL	TATAGTCAATTACAATGAAGTTTGCGTATAAAATATCCTGTTGGTAAATCTTATGATGCT	NA	NA	NA	NA
WP_012461378.1|795293_796829_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	39.4	7.8e-95
WP_012461379.1|797015_798956_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_012461380.1|799271_799559_+	type IV secretion system protein VirB3	NA	NA	NA	NA	NA
WP_012461381.1|799569_801987_+	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA	NA
WP_012461382.1|801986_804434_+	type IV secretion system protein	NA	NA	NA	NA	NA
WP_012461383.1|804455_808343_+	type IV secretion system protein	NA	NA	NA	NA	NA
WP_012461384.1|808396_811669_+	type IV secretion system protein	NA	NA	NA	NA	NA
WP_012461385.1|811661_814226_+	type IV secretion system protein	NA	NA	NA	NA	NA
WP_012461386.1|814262_815516_+	MFS transporter	NA	NA	NA	NA	NA
WP_012461387.1|815543_817586_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	36.4	5.9e-98
WP_012461388.1|817766_819113_+|tRNA	glutamate--tRNA ligase	tRNA	A0A2K9L594	Tupanvirus	35.7	2.0e-09
WP_012461389.1|819177_820614_+|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	32.1	2.5e-50
WP_012461392.1|822939_823617_+	DUF2659 family protein	NA	NA	NA	NA	NA
WP_109455975.1|823670_825029_+	PQQ-like beta-propeller repeat protein	NA	NA	NA	NA	NA
WP_012461396.1|827026_827197_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_012461397.1|827205_827529_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_158296917.1|828451_828604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080503925.1|828803_828977_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_012461400.1|831454_831820_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_012461401.1|831839_832046_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_012461402.1|832487_834380_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	30.8	1.8e-88
WP_012461403.1|834544_835711_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_012461404.1|835862_837332_+	trigger factor	NA	NA	NA	NA	NA
WP_158296918.1|837462_837726_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_012461405.1|837854_839525_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.5	1.2e-45
WP_012461406.1|839630_840380_-	winged helix-turn-helix domain-containing protein	NA	W8CYM9	Bacillus_phage	28.4	3.4e-11
WP_012461407.1|840672_841029_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_041621791.1|841110_841383_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_012461409.1|841425_841941_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_012461410.1|842107_843583_+	NTP/NDP exchange transporter	NA	NA	NA	NA	NA
WP_012461411.1|844948_845419_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_012461412.1|845427_845853_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0R6PGY7	Moraxella_phage	27.1	1.2e-05
WP_158296919.1|846086_846224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461415.1|849422_850766_+	DUF2748 family protein	NA	NA	NA	NA	NA
WP_012461416.1|850999_852109_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_076611195.1|856365_857232_+|transposase	IS630-like element ISOt3 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	29.0	5.0e-22
WP_012461425.1|858708_860181_-	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_012461426.1|860190_861681_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_012461427.1|861673_862075_-	cation:proton antiporter subunit C	NA	NA	NA	NA	NA
WP_012461428.1|862052_862487_-	Na(+)/H(+) antiporter subunit B	NA	NA	NA	NA	NA
WP_012461429.1|862507_863098_-	DUF4040 domain-containing protein	NA	NA	NA	NA	NA
WP_012461430.1|863094_863424_-	monovalent cation/H(+) antiporter subunit G	NA	NA	NA	NA	NA
WP_012461431.1|863976_864837_-	TIGR01459 family HAD-type hydrolase	NA	NA	NA	NA	NA
WP_041621794.1|864971_867377_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.0	1.6e-110
WP_158296920.1|867599_867809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461434.1|868245_869664_+	amino acid permease	NA	NA	NA	NA	NA
WP_012461436.1|872574_874278_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
871142:871246	attR	TATAGTCAATTACAATGAAGTTTGCGTATAAAATATCCTGTTGGTAAATCTTATGATGCTATTGTCGCTTTTTTCTATACTCAAACTTCATTGTAATTGACTATA	NA	NA	NA	NA
WP_012461437.1|874274_874898_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_012461438.1|874845_875787_+	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_012461442.1|880279_880945_-	guanylate kinase	NA	A0A223FN12	Murmansk_poxvirus	31.2	6.5e-14
WP_012461443.1|881161_881926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461444.1|882684_883041_-	divalent-cation tolerance protein CutA	NA	NA	NA	NA	NA
WP_012461445.1|883098_884451_-	signal recognition particle protein	NA	D6PHS7	uncultured_phage	26.8	3.9e-05
WP_011944757.1|885540_885822_-	ETC complex I subunit	NA	NA	NA	NA	NA
WP_011944758.1|885875_886115_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_158296921.1|888002_888140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012460827.1|888481_889450_+|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_076611195.1|890766_891633_+|transposase	IS630-like element ISOt3 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	29.0	5.0e-22
>prophage 9
NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	2008987	901888	969005	2008987	capsid,head,tRNA,transposase,tail,protease	Thermus_phage(18.18%)	53	NA	NA
WP_012461454.1|901888_902749_+|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	23.7	5.5e-05
WP_012460827.1|904750_905719_-|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_012460914.1|905889_906225_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012461457.1|907524_908223_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_012461461.1|910730_911870_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_158296931.1|913687_914935_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_012461467.1|914944_915370_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_012460827.1|915580_916549_+|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_012460909.1|916564_917125_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_012461468.1|917176_918295_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_148141071.1|918443_920111_+	ankyrin repeat domain-containing protein	NA	Q6VZY0	Canarypox_virus	28.9	2.8e-05
WP_012461075.1|920139_920964_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_012461470.1|923261_923717_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_012461471.1|923784_924831_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.5e-84
WP_012461118.1|924952_925108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461472.1|925147_925540_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1X9SH80	Bradyrhizobium_phage	37.5	1.1e-05
WP_012460849.1|925581_926076_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_050731378.1|926094_926562_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_080503931.1|927055_927316_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_012461475.1|928483_930148_+	RNA-binding protein	NA	NA	NA	NA	NA
WP_012461476.1|930236_931670_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.5	4.3e-71
WP_012461482.1|935891_937490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461483.1|937911_938295_-	glutaredoxin family protein	NA	A0A223FNA2	NY_014_poxvirus	41.2	1.2e-09
WP_012461484.1|938502_938931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148141083.1|939028_939841_-	DUF2163 domain-containing protein	NA	NA	NA	NA	NA
WP_012461486.1|939844_940447_-	DUF2460 domain-containing protein	NA	A0A1W6DWM9	Sphingobium_phage	33.5	8.0e-19
WP_012461487.1|940439_940865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461488.1|940864_941206_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_012461489.1|941207_941753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461490.1|941786_942902_-|capsid	phage major capsid protein	capsid	B0VK33	Azospirillum_phage	40.3	1.7e-54
WP_011944605.1|942913_943468_-|head,protease	HK97 family phage prohead protease	head,protease	I6S2W2	Marinomonas_phage	44.6	1.7e-23
WP_012461491.1|944139_945096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461492.1|945178_946531_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_012461493.1|946735_948001_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_109455771.1|948819_949521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461495.1|951097_951943_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_012461497.1|954102_954333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944976.1|954537_954909_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_011944977.1|954921_955437_+	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_012461498.1|955447_956038_+	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_012461499.1|956049_957240_+	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_012461500.1|957236_957791_+	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_012461501.1|957808_959077_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_050731353.1|959380_960094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461505.1|961865_963365_+	NTP/NDP exchange transporter	NA	NA	NA	NA	NA
WP_012461506.1|963610_963967_+	TrbC/VirB2 family protein	NA	NA	NA	NA	NA
WP_148141084.1|964027_964384_+	TrbC/VirB2 family protein	NA	NA	NA	NA	NA
WP_012461508.1|964531_965011_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_012461509.1|965067_966030_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_012461510.1|966064_966403_-	DUF167 domain-containing protein	NA	NA	NA	NA	NA
WP_012461511.1|966558_967299_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
WP_012461512.1|967285_968152_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_012461513.1|968153_969005_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
>prophage 10
NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	2008987	975376	1052641	2008987	integrase,tRNA,transposase	Moraxella_phage(12.5%)	60	999639:999678	1053722:1053761
WP_080503932.1|975376_975703_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_012461522.1|977388_977853_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461523.1|977849_978401_-	conjugative transfer protein	NA	NA	NA	NA	NA
WP_041621571.1|978400_978736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050731354.1|978861_979941_-|integrase	site-specific integrase	integrase	A0A0R6PHE0	Moraxella_phage	25.4	3.8e-19
WP_148141086.1|979924_980089_-	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_109235163.1|980527_981172_-	SCO family protein	NA	NA	NA	NA	NA
WP_012461526.1|984103_985072_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	33.6	8.0e-37
WP_012461527.1|985049_987101_-|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_012461528.1|987093_987972_-|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_012461529.1|988516_990067_+	type-specific antigen TSA56	NA	NA	NA	NA	NA
WP_012461530.1|990293_991028_+	type-specific antigen TSA56	NA	NA	NA	NA	NA
WP_041621803.1|991231_992704_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_012461532.1|992672_993584_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_041621631.1|993564_994536_+	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_012461534.1|994546_995359_+	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA	NA
WP_148141087.1|995364_996516_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_041621804.1|999188_999401_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
999639:999678	attL	ATAATTTTGAACTACCTTAACCAGTTTCGAAAGAGGTCTA	NA	NA	NA	NA
WP_011944565.1|1000515_1001001_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_012461543.1|1002398_1004615_+	AAA family ATPase	NA	A0A2R8FE73	Brazilian_cedratvirus	24.5	2.9e-10
WP_012461544.1|1005105_1007745_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_041621633.1|1007925_1008126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461545.1|1008138_1009170_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_012461546.1|1009270_1010611_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_012461547.1|1010861_1012808_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	38.2	1.2e-119
WP_080503936.1|1012818_1013364_+	translation initiation factor IF-3	NA	A0A2C9CXP5	Yersinia_phage	26.7	3.5e-05
WP_012461549.1|1013530_1013977_+	dUTP diphosphatase	NA	A0A2R8FFV2	Cedratvirus	54.7	5.9e-35
WP_012461550.1|1014071_1014617_+	ATP synthase F1 subunit delta	NA	NA	NA	NA	NA
WP_012461551.1|1014659_1016198_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_148141119.1|1016230_1017103_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_012461553.1|1017113_1017746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041621634.1|1017747_1019361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461555.1|1019493_1022163_+|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L3D8	Tupanvirus	37.5	1.2e-69
WP_041621635.1|1022362_1023787_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_012461557.1|1023795_1024140_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	34.3	3.4e-14
WP_012461558.1|1024305_1026078_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_012461559.1|1026089_1026821_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_080503986.1|1028694_1030044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461013.1|1030052_1031489_+	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	37.3	1.6e-70
WP_041621594.1|1031722_1032298_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A292GI44	Xanthomonas_phage	29.8	2.3e-07
WP_012461015.1|1032432_1032981_+	ankyrin repeat domain-containing protein	NA	K7Y837	Megavirus	34.7	8.3e-15
WP_012461016.1|1033027_1033576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461017.1|1033579_1034389_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.7	2.2e-19
WP_012461018.1|1034755_1035034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461019.1|1035098_1035800_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_012460852.1|1035928_1036210_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012460851.1|1036251_1036725_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_050731378.1|1037218_1037686_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_012461206.1|1037704_1038199_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_012461119.1|1038240_1038633_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1X9SH80	Bradyrhizobium_phage	37.5	6.6e-06
WP_012461205.1|1038672_1038828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461564.1|1038948_1039947_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	4.8e-85
WP_012461203.1|1040014_1040470_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_080503937.1|1043879_1044983_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_012461028.1|1045034_1045595_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_012460827.1|1045610_1046579_-|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_148141088.1|1047172_1047742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461568.1|1047994_1048987_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_012461569.1|1049049_1050321_-|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	tRNA	NA	NA	NA	NA
WP_012461572.1|1052194_1052641_+|integrase	site-specific integrase	integrase	A0A0R6PGY7	Moraxella_phage	31.9	9.4e-09
1053722:1053761	attR	TAGACCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTAT	NA	NA	NA	NA
>prophage 11
NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	2008987	1158987	1219569	2008987	transposase	Wolbachia_phage(14.29%)	45	NA	NA
WP_041621647.1|1158987_1159950_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	63.7	8.7e-84
WP_012461674.1|1160636_1161029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041621649.1|1161070_1161559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461676.1|1161617_1162073_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_173024089.1|1162349_1162766_+	MobA/MobL family protein	NA	NA	NA	NA	NA
WP_173024097.1|1163432_1165196_+	AAA family ATPase	NA	A0A291LA07	Bordetella_phage	26.1	1.4e-10
WP_080503987.1|1167018_1168137_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_012461680.1|1168121_1169114_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_012461079.1|1169123_1170878_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_012461681.1|1170883_1172029_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_012461682.1|1172044_1174396_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012460827.1|1174478_1175447_-|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_012460914.1|1175617_1175953_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012461457.1|1177252_1177951_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_012460935.1|1179635_1179956_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_012461684.1|1180782_1181793_+	ankyrin repeat domain-containing protein	NA	A0A0M3ZHR3	Turkeypox_virus	33.3	2.6e-14
WP_080503939.1|1181691_1183494_-	TraC family protein	NA	NA	NA	NA	NA
WP_012460821.1|1183474_1183804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012462300.1|1183803_1183986_-	hypothetical protein	NA	NA	NA	NA	NA
WP_173024091.1|1184035_1184194_-	conjugal transfer protein TraB	NA	NA	NA	NA	NA
WP_012460817.1|1184478_1184781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080503940.1|1186732_1186951_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_012461688.1|1188174_1188354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158296922.1|1189192_1189330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011945032.1|1190716_1191097_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	33.0	8.9e-08
WP_012461690.1|1191093_1192656_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_012461691.1|1193052_1194192_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_012461696.1|1196037_1196475_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_041621653.1|1196486_1196690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461697.1|1197281_1198484_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_012461698.1|1198590_1199628_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_012461699.1|1199687_1200521_+	VacJ family lipoprotein	NA	NA	NA	NA	NA
WP_012461700.1|1200517_1201108_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012461701.1|1201135_1202338_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
WP_012461702.1|1202378_1202891_+	hypothetical protein	NA	A0A067XRB3	Caulobacter_phage	47.7	2.4e-32
WP_012461703.1|1202950_1203676_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_012461709.1|1206650_1206974_-	DUF721 domain-containing protein	NA	NA	NA	NA	NA
WP_012461710.1|1207011_1207692_-	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_012461711.1|1207940_1208312_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_012461712.1|1208336_1208858_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_012461713.1|1208861_1210982_+	elongation factor G	NA	A0A1S5SF82	Streptococcus_phage	27.7	2.5e-59
WP_012461714.1|1211232_1212708_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011945048.1|1216319_1216541_-	cold-shock protein	NA	NA	NA	NA	NA
WP_012461717.1|1218258_1219125_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_080503941.1|1219302_1219569_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 12
NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	2008987	1226251	1290645	2008987	terminase,integrase,tRNA,transposase	Orpheovirus(22.22%)	47	1261989:1262008	1304431:1304450
WP_012461723.1|1226251_1227673_-|terminase	phage terminase large subunit	terminase	A0A088FB00	Idiomarinaceae_phage	34.2	1.7e-56
WP_012461724.1|1228004_1228628_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_012461725.1|1228627_1229188_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_012461726.1|1229197_1230298_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_012461727.1|1231668_1232463_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_012461729.1|1234053_1235193_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_012461030.1|1235732_1236014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461301.1|1236017_1236830_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	29.5	2.0e-28
WP_012461731.1|1238584_1238908_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_041621655.1|1238953_1239289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461734.1|1239838_1240165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158296923.1|1241791_1241929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461738.1|1243045_1247572_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_012461740.1|1248990_1249197_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_155367757.1|1249193_1249337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461744.1|1253199_1253775_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	32.1	2.1e-08
WP_012461745.1|1254513_1256664_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461746.1|1257315_1258101_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	28.7	3.3e-17
WP_012460896.1|1258142_1258598_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_148141092.1|1258875_1259850_+	MobA/MobL family protein	NA	NA	NA	NA	NA
WP_012461748.1|1259954_1260425_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_012461749.1|1260427_1261567_-|integrase	site-specific integrase	integrase	A0A0U4JNS1	Bacillus_phage	27.3	2.6e-18
1261989:1262008	attL	CTACTTTTTTTTGAACCAGC	NA	NA	NA	NA
WP_012461750.1|1261998_1262265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461751.1|1263070_1266508_+	response regulator	NA	Q8QKV7	Ectocarpus_siliculosus_virus	22.3	3.0e-09
WP_012461753.1|1268107_1269037_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_012461755.1|1269700_1270840_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_158296924.1|1271137_1271311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461757.1|1271865_1273005_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_012461758.1|1273545_1273827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461764.1|1277676_1278345_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_012461765.1|1278930_1279419_-	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_012461766.1|1279430_1280702_-|tRNA	histidine--tRNA ligase	tRNA	A0A2I2L577	Orpheovirus	22.4	7.8e-24
WP_012461767.1|1280704_1281190_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
WP_012461768.1|1281194_1281557_-	NADH ubiquinone oxidoreductase	NA	NA	NA	NA	NA
WP_012461769.1|1281528_1282035_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	48.5	2.4e-32
WP_012461770.1|1282034_1282562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461771.1|1282690_1283515_-	DsbA family protein	NA	NA	NA	NA	NA
WP_012461772.1|1283643_1283964_-	ferredoxin family protein	NA	NA	NA	NA	NA
WP_012461773.1|1283969_1284680_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_012461774.1|1284672_1285404_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_148141093.1|1285381_1286233_+	glutamine synthetase	NA	NA	NA	NA	NA
WP_012461777.1|1287876_1288104_+	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_012461778.1|1288150_1288312_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_012461748.1|1288314_1288785_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_012462136.1|1288852_1289188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461780.1|1289187_1289580_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
WP_012460827.1|1289676_1290645_-|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
1304431:1304450	attR	CTACTTTTTTTTGAACCAGC	NA	NA	NA	NA
>prophage 13
NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	2008987	1307769	1382316	2008987	holin,protease,tRNA,transposase	Synechococcus_phage(14.29%)	48	NA	NA
WP_076611195.1|1307769_1308637_-|transposase	IS630-like element ISOt3 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	29.0	5.0e-22
WP_012461800.1|1309150_1309633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461801.1|1309684_1310563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461804.1|1313304_1313784_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_012461805.1|1313830_1314730_+	RNA polymerase sigma factor RpoH	NA	G8CLC7	Synechococcus_phage	26.7	3.5e-10
WP_109455661.1|1315419_1315974_-	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_012461809.1|1318891_1320379_-	ankyrin repeat domain-containing protein	NA	A0A0M3ZHP2	Turkeypox_virus	32.7	6.4e-09
WP_012460976.1|1323891_1325031_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_012461817.1|1328135_1328612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461818.1|1329544_1330093_-	cytochrome c family protein	NA	NA	NA	NA	NA
WP_108883954.1|1330352_1331300_+	paraslipin	NA	S4VT23	Pandoravirus	26.1	3.7e-10
WP_012461822.1|1333628_1334645_-	P-loop NTPase	NA	NA	NA	NA	NA
WP_012461823.1|1334824_1335880_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_012461824.1|1335903_1336770_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_012461825.1|1336787_1338188_+|protease	DegP-like serine protease TSA47	protease	W5SAB9	Pithovirus	31.1	1.2e-06
WP_012461826.1|1338401_1339016_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_012461827.1|1339279_1342063_-	glycoside hydrolase TIM-barrel-like domain-containing protein	NA	A0A0B5A7K5	Paracoccus_phage	28.4	7.5e-96
WP_012461828.1|1342261_1343278_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	27.1	1.1e-17
WP_012461829.1|1343274_1344180_+	bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	38.7	8.8e-30
WP_012461830.1|1344114_1345500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461831.1|1345499_1347866_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	33.8	1.1e-90
WP_012461832.1|1347958_1348915_-	malate dehydrogenase	NA	NA	NA	NA	NA
WP_012461833.1|1349134_1349629_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_012461834.1|1349797_1352329_+	AsmA-like C-terminal region-containing protein	NA	NA	NA	NA	NA
WP_041621667.1|1352543_1353467_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.3	1.5e-08
WP_012461836.1|1353463_1354009_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	41.7	3.8e-20
WP_148141114.1|1355574_1356669_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_012461838.1|1356720_1357740_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_012461840.1|1358959_1359985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148141120.1|1360183_1360411_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_012461842.1|1360632_1361217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461843.1|1361243_1362797_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012461844.1|1362876_1363626_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_012461845.1|1363631_1363925_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_012461846.1|1364688_1366269_-|tRNA	lysine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_012461847.1|1366407_1366956_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_012461848.1|1366918_1367464_+	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA	NA
WP_012461849.1|1367564_1368257_+	phosphatidylserine decarboxylase	NA	A0A1V0SDU9	Indivirus	34.1	8.6e-17
WP_012461850.1|1368308_1369082_+|holin	phosphatidylcholine/phosphatidylserine synthase	holin	NA	NA	NA	NA
WP_012461851.1|1369131_1369617_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_041621668.1|1369613_1369868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461852.1|1369896_1372737_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_012461853.1|1372928_1374602_-	NADH dehydrogenase	NA	NA	NA	NA	NA
WP_012461854.1|1374670_1375549_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	31.9	3.3e-21
WP_012461855.1|1375563_1376724_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_012461856.1|1376780_1378043_-	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_012461857.1|1378397_1378985_-	DUF1013 domain-containing protein	NA	NA	NA	NA	NA
WP_012461858.1|1379112_1382316_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	34.5	4.1e-178
>prophage 14
NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	2008987	1398343	1480066	2008987	integrase,tRNA,transposase	Thermus_phage(13.33%)	60	1398271:1398330	1472048:1473302
1398271:1398330	attL	TATAGATACCGTGATAAGAATCAAGAAAAGAAATAATAATTTTATAAAAAAGATGTAAGT	NA	NA	NA	NA
WP_012460827.1|1398343_1399312_-|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_012460914.1|1399482_1399818_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012461876.1|1401886_1402111_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_041621670.1|1402144_1402750_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_012461878.1|1402876_1403626_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_012461879.1|1403727_1406445_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	A0A172JHV7	Bacillus_phage	32.6	4.3e-104
WP_012461880.1|1406478_1407759_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	54.6	4.6e-109
WP_012461881.1|1408448_1410941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461882.1|1411176_1411716_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_011944364.1|1411716_1411851_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_080503988.1|1412391_1412550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_173024099.1|1412742_1413528_+	cytochrome c1	NA	NA	NA	NA	NA
WP_012461884.1|1414016_1414772_-	ribonuclease PH	NA	NA	NA	NA	NA
WP_012461885.1|1414901_1415498_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_158296925.1|1416147_1416303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461887.1|1416849_1417482_-	3'-5' exonuclease	NA	U3REX6	uncultured_virus	31.7	2.2e-11
WP_011944369.1|1417488_1417788_-	septum formation initiator family protein	NA	NA	NA	NA	NA
WP_012461888.1|1417795_1418446_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_012461889.1|1418448_1419144_-	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	43.0	1.0e-17
WP_012461890.1|1419319_1421125_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	29.0	5.3e-42
WP_012461891.1|1421442_1425147_-	DNA polymerase III subunit alpha	NA	A0A0K1Y8T6	Streptomyces_phage	30.9	5.3e-129
WP_012461892.1|1425136_1427701_-|tRNA	valine--tRNA ligase	tRNA	A0A2K9L2Y7	Tupanvirus	50.7	1.9e-247
WP_012461893.1|1427732_1428608_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
WP_148141095.1|1428875_1429661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461895.1|1430002_1431001_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_080503948.1|1432348_1432654_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012461899.1|1433787_1434048_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155729606.1|1434041_1434203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041621841.1|1434579_1435332_-	cytochrome c oxidase subunit II	NA	NA	NA	NA	NA
WP_012461901.1|1435486_1435963_-	RDD family protein	NA	NA	NA	NA	NA
WP_012461902.1|1437128_1439345_+	type IV secretion system protein	NA	NA	NA	NA	NA
WP_012461903.1|1440464_1440689_-	hypothetical protein	NA	I6R0L8	Salmonella_phage	53.1	1.3e-06
WP_041621843.1|1440889_1441273_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_012461905.1|1441637_1444511_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	54.6	2.4e-307
WP_012461906.1|1445028_1445271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461907.1|1445504_1446368_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_012461913.1|1450511_1451774_+	MFS transporter	NA	NA	NA	NA	NA
WP_012461914.1|1451789_1453193_+	sodium:pantothenate symporter	NA	NA	NA	NA	NA
WP_109455691.1|1454465_1454645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155367747.1|1455672_1455843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944522.1|1456747_1457047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461920.1|1457940_1459086_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_012461921.1|1459396_1459789_+	cytochrome c maturation protein CcmE	NA	NA	NA	NA	NA
WP_012461922.1|1459822_1460737_+	DUF1189 family protein	NA	NA	NA	NA	NA
WP_012461923.1|1460733_1461207_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_012461924.1|1461220_1462984_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.3	3.6e-59
WP_012461925.1|1463292_1464048_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	34.0	1.6e-21
WP_148141121.1|1464076_1464865_-	MlaE family lipid ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_012461927.1|1464981_1465773_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_012461928.1|1465899_1466523_+	30S ribosomal protein S4	NA	NA	NA	NA	NA
WP_109456073.1|1467144_1467312_+	TraU family protein	NA	NA	NA	NA	NA
WP_012461935.1|1468848_1470384_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_012461936.1|1470393_1470855_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_012460827.1|1471065_1472034_+|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_012460909.1|1472049_1472610_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_080503990.1|1472661_1473765_-	toprim domain-containing protein	NA	NA	NA	NA	NA
1472048:1473302	attR	ACTTACATCTTTTTTATAAAATTATTATTTCTTTTCTTGATTCTTATCACGGTATCTATATGCTTTTTCCTAACAATTTCATCATTCGACATACTTTGCAGATCGACTAATTGATAGTCAGAAGTCATTAATTGCTTAGCTATCATTGAATCTGTAAATAAATCCCACAAATTTCTAGGTGCATTGTAGACTTCTTTGCCGTTGTAGATCACTAAATTATACACTAATGGTAATTTAGTTTTTTCTTTCTTATGCCTTTCGCACAATAACAATGTGTATCTCCATAACCGCAGAGCTGTCCAATAATCGACGGTTGATTGAGCTTCAATTAATATATAAATAAAAGCATTGCCATGTTTTTTGGTGGCAACTCTATAGACGATATCACTGTATTTTTTCTTTAACGATTCTTCTATATAACTCTCTTGCTCTACTTTTATTTGTGATAAATCTATTAAACTCTTGAAGTCCGTTGGTAAATAATACTCTAGAAATTCTTGTGCAGCTACTGGATCACTCATGATTGTCTTTGCCAATGAATCATGCTTTAATTTTTTTGTCATATTTTTTCACTCTATAGTTTTTTAAATAAAAAATGCTGTGTCATACTCTGCCTAGTGTTTCTGACATAATCTTTGTTGTATATTAGTTTGTATTGATTCAATTTTTTCATTAAGTTTTCTTATTTCAGGGCTGATAATATTTCTAACAGCATATAATCCTTGAGTTTTTAATACATTATTAAAGTCATTTTTGACTGTACAGACTACTGCTTCCTTATCCTCTAGAACTTTTTCAGCTTTTTCAGTATTTACGTCATTTTTAACTGCTAGAATGATCTTTTCTTTTGGGCCAGGATTATAGTTTTGCAAATTTTCGGCTTCAATTGCACATAAGATTTTTCCTTCTACTCCAGCTTGCCTAATGGTTAACGCTGTTTCAATATCTTTTGTAATAATTGTTACAGGTGAATATTTTGAATTTTGTTGAGCAATTTCAGCAAATGAGCCACTAATTGTACCAACAGATTTTTCTGGAATATCAGCTTTATTACATGTTTTTGAATTCAGAGTTAATATCTTAGCTCCAGTAATTTCACCTGCTTCATTTTTAACAAAAATAGTGAGTGCAGGCCAGGATTTTTGAGTCTCTTCATCAAAAACCATATTTGCCCTTAAATTAGAATTGTTAAAGATTTTTGCACTATAAATTCCTGTATGGTTTTCTAAAAATTTGTTTACTACTATCGCTTCCA	NA	NA	NA	NA
WP_041621676.1|1474564_1475335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461939.1|1475435_1478240_-	AAA family ATPase	NA	A0A2P0VMS9	Tetraselmis_virus	23.4	6.6e-07
WP_012461940.1|1478533_1478989_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_012461941.1|1479067_1480066_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.4e-84
>prophage 15
NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	2008987	1501321	1582480	2008987	transposase	Bodo_saltans_virus(25.0%)	50	NA	NA
WP_076611195.1|1501321_1502189_-|transposase	IS630-like element ISOt3 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	29.0	5.0e-22
WP_148141122.1|1502343_1502757_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_012461967.1|1505349_1506078_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_012461968.1|1506131_1506587_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_012461970.1|1508973_1510758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080503954.1|1511359_1512475_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_012461972.1|1512459_1513488_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_012461079.1|1513497_1515252_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_012461681.1|1515257_1516403_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_012461682.1|1516418_1518770_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012460827.1|1518852_1519821_-|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_012460914.1|1519991_1520327_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012461457.1|1521626_1522325_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_012461973.1|1524009_1524393_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_012461684.1|1525157_1526168_+	ankyrin repeat domain-containing protein	NA	A0A0M3ZHR3	Turkeypox_virus	33.3	2.6e-14
WP_012462301.1|1526066_1527869_-	TraC family protein	NA	NA	NA	NA	NA
WP_012460821.1|1527849_1528179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080503900.1|1529347_1529530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012460926.1|1529547_1529877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012460927.1|1530241_1530718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012460928.1|1530714_1531266_-	conjugative transfer protein	NA	NA	NA	NA	NA
WP_012461976.1|1531265_1531601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148141086.1|1532789_1532954_-	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_012461978.1|1533354_1533837_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_012461979.1|1533944_1535111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461980.1|1535129_1536386_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_148141096.1|1537385_1537568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461981.1|1538556_1539654_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_012461982.1|1540329_1542075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050731364.1|1544253_1544640_+	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_012461986.1|1545217_1546111_+	lipase LipB	NA	NA	NA	NA	NA
WP_080503991.1|1548913_1549288_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_012461990.1|1549360_1549852_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_012461992.1|1550820_1551489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012461993.1|1551686_1552484_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_012461996.1|1554139_1554604_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_012461997.1|1554607_1556173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012462003.1|1560447_1561383_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_012460827.1|1561629_1562598_+|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_148141097.1|1565137_1565428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012462005.1|1566411_1567200_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461461.1|1568940_1570080_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_045916150.1|1571001_1572513_+	deoxyribodipyrimidine photo-lyase	NA	A0A2H4UV63	Bodo_saltans_virus	30.2	3.4e-50
WP_012462008.1|1572533_1573496_-	thioredoxin-disulfide reductase	NA	A0A2K9L162	Tupanvirus	40.5	3.8e-55
WP_012462009.1|1573625_1574549_-	AEC family transporter	NA	NA	NA	NA	NA
WP_012462010.1|1574724_1576086_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_012462011.1|1576419_1577847_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.5	8.2e-38
WP_012462012.1|1577938_1578742_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_012462013.1|1578917_1579526_+	major outer membrane protein TSA22	NA	NA	NA	NA	NA
WP_012462018.1|1581601_1582480_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	57.7	1.6e-84
>prophage 16
NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	2008987	1631108	1693191	2008987	integrase,tRNA,transposase	Moraxella_phage(25.0%)	50	1647912:1647947	1693563:1693598
WP_012462055.1|1631108_1632308_+|integrase	site-specific integrase	integrase	A0A0R6PGY7	Moraxella_phage	25.9	2.1e-26
WP_012462056.1|1632428_1632764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012462057.1|1632763_1633315_+	conjugative transfer protein	NA	NA	NA	NA	NA
WP_012462058.1|1633311_1633614_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012462060.1|1635194_1636010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012460921.1|1637462_1637783_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_012462063.1|1637779_1639471_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_012460910.1|1641227_1641572_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_158296927.1|1641546_1641747_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_080503957.1|1641752_1642820_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_148141123.1|1642837_1643341_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_041621687.1|1643432_1644284_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_012462070.1|1644384_1645029_+	zinc-ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_045916299.1|1647096_1647711_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A292GI44	Xanthomonas_phage	28.3	4.5e-09
1647912:1647947	attL	TATATCTCTTAATATTTAGGAATATTTTTTGATATA	NA	NA	NA	NA
WP_012462074.1|1648163_1648523_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_158296928.1|1648619_1648763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080503958.1|1649267_1649903_-|integrase	site-specific integrase	integrase	A0A0R6PGY7	Moraxella_phage	28.3	1.8e-13
WP_155367750.1|1650093_1650267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012462077.1|1650551_1650797_-	DUF2312 domain-containing protein	NA	B0VK10	Azospirillum_phage	46.7	5.0e-12
WP_012462078.1|1651362_1651980_-	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	41.9	1.4e-23
WP_012462079.1|1652049_1653087_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_012462080.1|1653070_1653817_+	ComF family protein	NA	NA	NA	NA	NA
WP_012462081.1|1653946_1654597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050731391.1|1654660_1657012_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	43.1	2.1e-171
WP_012462083.1|1657149_1658163_+	serine/threonine dehydratase	NA	NA	NA	NA	NA
WP_012462084.1|1658727_1660596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148141124.1|1660937_1661060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012462085.1|1661148_1662918_-	RNA-binding protein	NA	NA	NA	NA	NA
WP_076611195.1|1664426_1665293_+|transposase	IS630-like element ISOt3 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	29.0	5.0e-22
WP_012462087.1|1666217_1667438_-	MFS transporter	NA	NA	NA	NA	NA
WP_012462088.1|1667749_1668646_-	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
WP_012462089.1|1668818_1670378_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_012462090.1|1671519_1674954_+	response regulator	NA	Q8QKV7	Ectocarpus_siliculosus_virus	21.0	3.9e-09
WP_012462092.1|1675399_1676518_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_012462093.1|1676801_1677626_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_012462096.1|1679899_1680355_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_041621649.1|1680413_1680902_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012461674.1|1680943_1681336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012462097.1|1681747_1682362_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1X9SH80	Bradyrhizobium_phage	33.8	1.7e-08
WP_012462100.1|1683948_1684284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012462101.1|1684283_1684700_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
WP_012462103.1|1684939_1685866_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	62.0	2.0e-85
WP_012462105.1|1687327_1688467_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_080946937.1|1689090_1689267_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_012460851.1|1689494_1689968_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_050731378.1|1690461_1690929_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_012461206.1|1690947_1691442_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_012461119.1|1691483_1691876_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1X9SH80	Bradyrhizobium_phage	37.5	6.6e-06
WP_012461118.1|1691915_1692071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012462107.1|1692192_1693191_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.1e-84
1693563:1693598	attR	TATATCTCTTAATATTTAGGAATATTTTTTGATATA	NA	NA	NA	NA
>prophage 17
NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	2008987	1700850	1746991	2008987	integrase,transposase	Moraxella_phage(28.57%)	32	1723317:1723334	1735592:1735609
WP_012462117.1|1700850_1701498_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_080503899.1|1701549_1702653_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_012462118.1|1702950_1704699_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_012462095.1|1704740_1705757_-	MobA/MobL family protein	NA	NA	NA	NA	NA
WP_012462119.1|1706034_1706490_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_041621690.1|1706587_1707124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012462122.1|1707901_1709041_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_012462055.1|1709641_1710841_-|integrase	site-specific integrase	integrase	A0A0R6PGY7	Moraxella_phage	25.9	2.1e-26
WP_173024100.1|1712764_1713511_-	rhodanese domain-containing protein	NA	NA	NA	NA	NA
WP_012462127.1|1713624_1714260_-	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_148141101.1|1715273_1716434_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_012462133.1|1720303_1721443_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_012460990.1|1721876_1722521_-	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	32.4	1.4e-13
1723317:1723334	attL	TTTTTTTTTGGACAAGCA	NA	NA	NA	NA
WP_012462134.1|1723364_1724801_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	36.0	9.6e-71
WP_080503960.1|1724809_1725559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012462135.1|1726047_1727247_+|integrase	site-specific integrase	integrase	A0A0R6PGY7	Moraxella_phage	25.9	1.2e-26
WP_012462136.1|1727367_1727703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012462137.1|1727702_1728254_+	conjugative transfer protein	NA	NA	NA	NA	NA
WP_012460927.1|1728250_1728727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012460926.1|1729091_1729421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080503900.1|1729438_1729621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012460821.1|1730789_1731119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012462140.1|1733585_1734245_+	conjugative transfer protein	NA	NA	NA	NA	NA
WP_012460825.1|1734331_1734535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012462141.1|1734535_1735513_+	TraU family protein	NA	NA	NA	NA	NA
WP_012462142.1|1735535_1735919_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
1735592:1735609	attR	TTTTTTTTTGGACAAGCA	NA	NA	NA	NA
WP_012462143.1|1735915_1737607_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_012462144.1|1737603_1738302_+	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_076611195.1|1739378_1740245_+|transposase	IS630-like element ISOt3 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	29.0	5.0e-22
WP_012461082.1|1740567_1740903_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012460827.1|1741073_1742042_+|transposase	IS110-like element ISOt5 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	5.9e-24
WP_012462149.1|1746028_1746991_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.1	1.3e-84
>prophage 19
NC_010793	Orientia tsutsugamushi str. Ikeda, complete genome	2008987	1865231	1932573	2008987	tRNA,transposase	Wolbachia_phage(15.38%)	45	NA	NA
WP_012462246.1|1865231_1866251_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_080503987.1|1866235_1867354_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_012462248.1|1872299_1872755_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_012462249.1|1872822_1873737_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	56.2	3.7e-84
WP_012462252.1|1876109_1877228_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148141104.1|1878311_1879178_+|transposase	IS630 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	29.3	1.3e-22
WP_012462257.1|1881821_1882634_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	31.0	1.8e-29
WP_012462258.1|1882637_1883147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012462259.1|1883247_1883895_-	ankyrin repeat domain-containing protein	NA	A0A2K9L931	Tupanvirus	31.9	1.8e-13
WP_012462260.1|1883932_1884508_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A291L9W9	Bordetella_phage	31.3	5.7e-06
WP_012462261.1|1884741_1886178_-	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	37.8	5.1e-72
WP_012462264.1|1888078_1888957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012462265.1|1889358_1890219_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_080503996.1|1892075_1892219_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_012462266.1|1893426_1894326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148141105.1|1894514_1895375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155367734.1|1895358_1895520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012462268.1|1895799_1896117_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_012462269.1|1896945_1897884_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_012462270.1|1897867_1898740_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_012462271.1|1898763_1899291_-	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	49.7	1.6e-39
WP_012462272.1|1899376_1899808_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_012462273.1|1899842_1900781_-	tyrosine recombinase XerC	NA	A0A0K0N6I5	Gordonia_phage	35.5	1.1e-11
WP_012462274.1|1900806_1902150_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
WP_012462275.1|1902231_1907157_+	NAD-glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_012462277.1|1908573_1910355_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.7	4.7e-27
WP_012462278.1|1910404_1911157_-	UMP kinase	NA	NA	NA	NA	NA
WP_012462279.1|1911384_1912476_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_012462280.1|1912465_1913875_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
WP_012462281.1|1913871_1915341_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_012462282.1|1915327_1917079_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_012462283.1|1917382_1917691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012462284.1|1917683_1918622_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_012462285.1|1918690_1919824_-	molecular chaperone DnaJ	NA	Q8QNB4	Ectocarpus_siliculosus_virus	25.5	5.1e-27
WP_012462286.1|1919912_1921841_-	molecular chaperone DnaK	NA	A0A2P1EIW2	Megavirus	46.7	4.5e-140
WP_012462287.1|1922221_1922509_-	BolA family transcriptional regulator	NA	NA	NA	NA	NA
WP_012462288.1|1922715_1923513_+	enoyl-ACP reductase	NA	NA	NA	NA	NA
WP_012462289.1|1924189_1925329_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_012462290.1|1925868_1926150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012462150.1|1926153_1926963_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	26.4	9.1e-18
WP_012461300.1|1927338_1928067_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_012461299.1|1928088_1928946_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_012460976.1|1929717_1930857_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_148141106.1|1931117_1931549_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_012462293.1|1931670_1932573_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	63.1	3.5e-87
