assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000010225.1_ASM1022v1	NC_009342	Corynebacterium glutamicum R, complete genome	1	306173-306362	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,cas2,cas1,cas6e,cas8e,cse2gr11,cas7,cas5,WYL,PrimPol,DinG	Orphan	GGCGGGGAGTCCGCCTTGCTTGGTACACCAGCGAACGAAAGTGGGC	46	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,cas2,cas1,cas6e,cas8e,cse2gr11,cas7,cas5,WYL,PrimPol,DinG	NA|76aa|up_8|NC_009342.1_300895_301123_-,NA|160aa|up_7|NC_009342.1_301170_301650_+,NA|152aa|up_6|NC_009342.1_301646_302102_+,NA|135aa|up_3|NC_009342.1_303484_303889_+,NA	NA|489aa|up_9|NC_009342.1_299352_300819_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|76aa|up_8|NC_009342.1_300895_301123_-	NA	NA|160aa|up_7|NC_009342.1_301170_301650_+	NA	NA|152aa|up_6|NC_009342.1_301646_302102_+	NA	NA|299aa|up_5|NC_009342.1_302127_303024_+	pfam07929, PRiA4_ORF3, Plasmid pRiA4b ORF-3-like protein	NA|133aa|up_4|NC_009342.1_303075_303474_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|135aa|up_3|NC_009342.1_303484_303889_+	NA	NA|212aa|up_2|NC_009342.1_303890_304526_+	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown]	NA|311aa|up_1|NC_009342.1_304522_305455_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|200aa|up_0|NC_009342.1_305476_306076_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|264aa|down_0|NC_009342.1_306648_307440_-	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|299aa|down_1|NC_009342.1_307450_308347_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|392aa|down_2|NC_009342.1_308489_309665_+	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]	NA|319aa|down_3|NC_009342.1_309661_310618_-	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|176aa|down_4|NC_009342.1_310638_311166_-	pfam12725, DUF3810, Protein of unknown function (DUF3810)	NA|94aa|down_5|NC_009342.1_311439_311721_+	COG0633, Fdx, Ferredoxin [Energy production and conversion]	NA|496aa|down_6|NC_009342.1_311717_313205_-	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|298aa|down_7|NC_009342.1_313864_314758_+	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|358aa|down_8|NC_009342.1_314749_315823_-	PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated	NA|153aa|down_9|NC_009342.1_315819_316278_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]
GCF_000010225.1_ASM1022v1	NC_009342	Corynebacterium glutamicum R, complete genome	2	416533-416628	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,cas2,cas1,cas6e,cas8e,cse2gr11,cas7,cas5,WYL,PrimPol,DinG	Orphan	TGCGTGGGCAGTGTGGTTTGGTTT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,cas2,cas1,cas6e,cas8e,cse2gr11,cas7,cas5,WYL,PrimPol,DinG	NA|62aa|up_4|NC_009342.1_412877_413063_-,NA|107aa|down_8|NC_009342.1_423848_424169_+	NA|315aa|up_9|NC_009342.1_408286_409231_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|399aa|up_8|NC_009342.1_409223_410420_+	cd01151, GCD, Glutaryl-CoA dehydrogenase	NA|158aa|up_7|NC_009342.1_410441_410915_+	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit	NA|276aa|up_6|NC_009342.1_411029_411857_+	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|228aa|up_5|NC_009342.1_411932_412616_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|62aa|up_4|NC_009342.1_412877_413063_-	NA	NA|261aa|up_3|NC_009342.1_413108_413891_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|187aa|up_2|NC_009342.1_413898_414459_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|248aa|up_1|NC_009342.1_414451_415195_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|399aa|up_0|NC_009342.1_415285_416482_+	pfam02674, Colicin_V, Colicin V production protein	NA|332aa|down_0|NC_009342.1_417048_418044_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|184aa|down_1|NC_009342.1_418058_418610_-	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|281aa|down_2|NC_009342.1_418774_419617_-	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|354aa|down_3|NC_009342.1_420096_421158_+	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|378aa|down_4|NC_009342.1_421154_422288_+	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|259aa|down_5|NC_009342.1_422272_423049_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|192aa|down_6|NC_009342.1_423045_423621_+	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|67aa|down_7|NC_009342.1_423644_423845_+	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|107aa|down_8|NC_009342.1_423848_424169_+	NA	NA|100aa|down_9|NC_009342.1_424191_424491_+	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein
GCF_000010225.1_ASM1022v1	NC_009342	Corynebacterium glutamicum R, complete genome	3	553076-553170	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,cas2,cas1,cas6e,cas8e,cse2gr11,cas7,cas5,WYL,PrimPol,DinG	Orphan	AAGTTTTCGGTCACCTAGTTTGGT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,cas2,cas1,cas6e,cas8e,cse2gr11,cas7,cas5,WYL,PrimPol,DinG	NA|95aa|up_6|NC_009342.1_546406_546691_+,NA|195aa|down_6|NC_009342.1_561305_561890_+,NA|171aa|down_7|NC_009342.1_561930_562443_+	NA|79aa|up_9|NC_009342.1_543287_543524_+	pfam05768, DUF836, Glutaredoxin-like domain (DUF836)	NA|464aa|up_8|NC_009342.1_543612_545004_+	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|303aa|up_7|NC_009342.1_545005_545914_+	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|95aa|up_6|NC_009342.1_546406_546691_+	NA	NA|295aa|up_5|NC_009342.1_546694_547579_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|468aa|up_4|NC_009342.1_547854_549258_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|619aa|up_3|NC_009342.1_549293_551150_+	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]	NA|146aa|up_2|NC_009342.1_551196_551634_+	PRK13015, PRK13015, 3-dehydroquinate dehydratase; Reviewed	NA|284aa|up_1|NC_009342.1_551648_552500_+	PRK14027, PRK14027, quinate/shikimate dehydrogenase (NAD+)	NA|92aa|up_0|NC_009342.1_552505_552781_-	COG0222, RplL, Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]	NA|351aa|down_0|NC_009342.1_553412_554465_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|549aa|down_1|NC_009342.1_554465_556112_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|360aa|down_2|NC_009342.1_556119_557199_-	cd13547, PBP2_Fbp_like_2, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|599aa|down_3|NC_009342.1_557926_559723_+	COG1587, HemD, Uroporphyrinogen-III synthase [Coenzyme metabolism]	NA|140aa|down_4|NC_009342.1_559748_560168_+	pfam12713, DUF3806, Domain of unknown function (DUF3806)	NA|340aa|down_5|NC_009342.1_560256_561276_+	PRK09283, PRK09283, porphobilinogen synthase	NA|195aa|down_6|NC_009342.1_561305_561890_+	NA	NA|171aa|down_7|NC_009342.1_561930_562443_+	NA	NA|879aa|down_8|NC_009342.1_562556_565193_+	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|359aa|down_9|NC_009342.1_565308_566385_+	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated
GCF_000010225.1_ASM1022v1	NC_009342	Corynebacterium glutamicum R, complete genome	4	792955-799754	4,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5	csa3,cas3,DEDDh,cas2,cas1,cas6e,cas8e,cse2gr11,cas7,cas5,WYL,PrimPol,DinG	Type I-E	GGAAATACCTCCGCGTGTGCGGAGAAGAG,GGAAATACCTCCGCGTGTGCGGAGAAGAG,GGAAATACCTCCGCGTGTGCGGAGAAGAG,GGAAATACCTCCGCGTGTGCGGAGAAGAG	29,29,29,29	8	8	793716-793747|793899-793930|795729-795760|796888-796919|798047-798078|798718-798749|798840-798871|799633-799664	NC_009343.1_40269-40238|NC_009343.1_34054-34085|NC_009343.1_24528-24497|NC_009343.1_44371-44340|NC_009343.1_28879-28910|NC_009343.1_24563-24594|NC_009343.1_35825-35856|NC_009342.1_2229617-2229648	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	111,111,91,91	111	TypeI-E	csa3,cas3,DEDDh,cas2,cas1,cas6e,cas8e,cse2gr11,cas7,cas5,WYL,PrimPol,DinG	NA|109aa|up_1|NC_009342.1_791552_791879_+,NA|148aa|up_0|NC_009342.1_791942_792386_-,NA|264aa|down_8|NC_009342.1_808713_809505_+	NA|507aa|up_9|NC_009342.1_781238_782759_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|375aa|up_8|NC_009342.1_782875_784000_+	PRK08649, PRK08649, GuaB3 family IMP dehydrogenase-related protein	NA|301aa|up_7|NC_009342.1_783996_784899_-	COG5006, rhtA, Threonine/homoserine efflux transporter [Amino acid transport and metabolism]	NA|304aa|up_6|NC_009342.1_784989_785901_+	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|524aa|up_5|NC_009342.1_785907_787479_+	PRK00074, guaA, GMP synthase; Reviewed	NA|148aa|up_4|NC_009342.1_787620_788064_+	pfam15583, Imm68, Immunity protein 68	NA|393aa|up_3|NC_009342.1_788331_789510_-	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]	NA|231aa|up_2|NC_009342.1_790860_791553_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|109aa|up_1|NC_009342.1_791552_791879_+	NA	NA|148aa|up_0|NC_009342.1_791942_792386_-	NA	cas2|105aa|down_0|NC_009342.1_799772_800087_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|310aa|down_1|NC_009342.1_800102_801032_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas3|875aa|down_2|NC_009342.1_801043_803668_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas6e|192aa|down_3|NC_009342.1_803667_804243_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas8e|524aa|down_4|NC_009342.1_804554_806126_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|214aa|down_5|NC_009342.1_806143_806785_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|361aa|down_6|NC_009342.1_806802_807885_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|down_7|NC_009342.1_807877_808594_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|264aa|down_8|NC_009342.1_808713_809505_+	NA	NA|527aa|down_9|NC_009342.1_809513_811094_+	cd03468, PolY_like, DNA Polymerase Y-family
GCF_000010225.1_ASM1022v1	NC_009342	Corynebacterium glutamicum R, complete genome	5	3113324-3113420	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,cas2,cas1,cas6e,cas8e,cse2gr11,cas7,cas5,WYL,PrimPol,DinG	Orphan	AAACCAAACCAGGTGACCGAAAATCT	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,cas2,cas1,cas6e,cas8e,cse2gr11,cas7,cas5,WYL,PrimPol,DinG	NA,NA|305aa|down_0|NC_009342.1_3113643_3114558_-	NA|294aa|up_9|NC_009342.1_3102287_3103169_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|421aa|up_8|NC_009342.1_3103213_3104476_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|227aa|up_7|NC_009342.1_3104790_3105471_+	pfam12006, DUF3500, Protein of unknown function (DUF3500)	NA|146aa|up_6|NC_009342.1_3105790_3106228_+	smart00974, T5orf172, This entry represents the putative helicase A859L	NA|246aa|up_5|NC_009342.1_3106347_3107085_-	pfam08348, PAS_6, YheO-like PAS domain	NA|420aa|up_4|NC_009342.1_3107347_3108607_-	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	NA|443aa|up_3|NC_009342.1_3108857_3110186_+	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters	NA|393aa|up_2|NC_009342.1_3110232_3111411_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|110aa|up_1|NC_009342.1_3111425_3111755_+	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|427aa|up_0|NC_009342.1_3111935_3113216_+	pfam12006, DUF3500, Protein of unknown function (DUF3500)	NA|305aa|down_0|NC_009342.1_3113643_3114558_-	NA	NA|254aa|down_1|NC_009342.1_3114541_3115303_-	cd08582, GDPD_like_2, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|464aa|down_2|NC_009342.1_3115703_3117095_+	COG2610, GntT, H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]	NA|239aa|down_3|NC_009342.1_3117210_3117927_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|318aa|down_4|NC_009342.1_3117923_3118877_+	pfam06089, Asparaginase_II, L-asparaginase II	NA|470aa|down_5|NC_009342.1_3118891_3120301_+	PRK12273, aspA, aspartate ammonia-lyase; Provisional	NA|500aa|down_6|NC_009342.1_3120314_3121814_+	PRK15049, PRK15049, L-asparagine permease	NA|620aa|down_7|NC_009342.1_3122338_3124198_-	PRK14725, PRK14725, pyruvate kinase; Provisional	NA|315aa|down_8|NC_009342.1_3124323_3125268_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|593aa|down_9|NC_009342.1_3125496_3127275_+	COG4425, COG4425, Predicted membrane protein [Function unknown]
