assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000010385.1_ASM1038v1	NC_011415	Escherichia coli SE11, complete genome	1	594866-594962	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|454aa|up_9|NC_011415.1_582735_584097_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NC_011415.1_584153_585455_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NC_011415.1_585476_586622_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NC_011415.1_586750_587536_-	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|412aa|up_5|NC_011415.1_587546_588782_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NC_011415.1_588803_589853_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NC_011415.1_590169_591837_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NC_011415.1_591846_593106_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NC_011415.1_593116_593932_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NC_011415.1_593928_594822_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NC_011415.1_595026_596094_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NC_011415.1_596090_596600_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NC_011415.1_596717_597440_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NC_011415.1_597442_597937_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NC_011415.1_598110_599496_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NC_011415.1_599531_600053_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NC_011415.1_600160_600373_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NC_011415.1_600374_601241_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NC_011415.1_601721_602264_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NC_011415.1_602483_603176_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_000010385.1_ASM1038v1	NC_011415	Escherichia coli SE11, complete genome	2	887855-887994	2	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATTCGACCTAC	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|50aa|up_9|NC_011415.1_876835_876985_+	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|258aa|up_8|NC_011415.1_877150_877924_+	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|230aa|up_7|NC_011415.1_877923_878613_+	PRK09421, modB, molybdate ABC transporter permease subunit	NA|353aa|up_6|NC_011415.1_878615_879674_+	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|273aa|up_5|NC_011415.1_879674_880493_-	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|332aa|up_4|NC_011415.1_880647_881643_+	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|318aa|up_3|NC_011415.1_881683_882637_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|351aa|up_2|NC_011415.1_882820_883873_+	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|478aa|up_1|NC_011415.1_883948_885382_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|754aa|up_0|NC_011415.1_885564_887826_+	PRK11413, PRK11413, putative hydratase; Provisional	NA|428aa|down_0|NC_011415.1_888059_889343_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|159aa|down_1|NC_011415.1_889494_889971_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|430aa|down_2|NC_011415.1_890029_891319_-	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|347aa|down_3|NC_011415.1_891405_892446_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|385aa|down_4|NC_011415.1_892442_893597_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|252aa|down_5|NC_011415.1_893583_894339_+	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|226aa|down_6|NC_011415.1_894331_895009_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|674aa|down_7|NC_011415.1_895587_897609_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|303aa|down_8|NC_011415.1_897800_898709_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|330aa|down_9|NC_011415.1_899105_900095_+	PRK00164, moaA, GTP 3',8-cyclase MoaA
GCF_000010385.1_ASM1038v1	NC_011415	Escherichia coli SE11, complete genome	3	3115020-3116390	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	22,22,22	22	TypeI-E	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NC_011415.1_3106832_3107594_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NC_011415.1_3107574_3108624_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NC_011415.1_3108620_3109100_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NC_011415.1_3109099_3109810_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NC_011415.1_3109828_3110140_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NC_011415.1_3110333_3110657_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NC_011415.1_3110706_3111312_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NC_011415.1_3111311_3112739_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NC_011415.1_3112740_3113649_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NC_011415.1_3113900_3114938_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NC_011415.1_3116486_3116780_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NC_011415.1_3116779_3117700_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NC_011415.1_3117696_3118347_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NC_011415.1_3118328_3119075_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NC_011415.1_3119085_3120141_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|NC_011415.1_3120152_3120692_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NC_011415.1_3120688_3122251_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NC_011415.1_3122348_3125048_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NC_011415.1_3125241_3125394_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NC_011415.1_3125658_3126393_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000010385.1_ASM1038v1	NC_011415	Escherichia coli SE11, complete genome	4	3142093-3143341	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	20,20,19	20	Unclear	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|47aa|down_1|NC_011415.1_3144490_3144631_+	NA|424aa|up_9|NC_011415.1_3130736_3132008_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NC_011415.1_3131998_3132259_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NC_011415.1_3132275_3132851_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NC_011415.1_3132998_3133859_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NC_011415.1_3133855_3134635_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NC_011415.1_3134612_3136022_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NC_011415.1_3136043_3137498_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NC_011415.1_3137567_3138353_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NC_011415.1_3138671_3139949_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NC_011415.1_3139975_3141454_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NC_011415.1_3143680_3144352_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NC_011415.1_3144490_3144631_+	NA	NA|433aa|down_2|NC_011415.1_3145576_3146875_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NC_011415.1_3146962_3148600_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NC_011415.1_3148827_3149619_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NC_011415.1_3149689_3150025_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NC_011415.1_3150024_3150273_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NC_011415.1_3150350_3152585_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NC_011415.1_3152632_3153934_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NC_011415.1_3153990_3156747_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
