The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_011999	Macrococcus caseolyticus JCSC5402, complete genome	2102324	505679	514324	2102324		Acinetobacter_phage(33.33%)	7	NA	NA
WP_012656385.1|505679_506588_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	24.5	3.2e-11
WP_041636312.1|506673_508155_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	37.4	3.6e-73
WP_012656387.1|508469_509984_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	36.9	7.5e-74
WP_086038242.1|510142_510643_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	65.1	1.2e-49
WP_012656389.1|510649_511507_-	DMT family transporter	NA	NA	NA	NA	NA
WP_012656390.1|511866_512256_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	54.5	2.5e-34
WP_012656391.1|512218_514324_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	82.2	0.0e+00
>prophage 2
NC_011999	Macrococcus caseolyticus JCSC5402, complete genome	2102324	570732	578649	2102324	transposase	Staphylococcus_phage(57.14%)	15	NA	NA
WP_148184246.1|570732_571002_-|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	75.0	1.3e-10
WP_157821003.1|571230_571371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041636326.1|571599_571821_+	hypothetical protein	NA	A0A0N9SHA3	Staphylococcus_phage	59.4	2.2e-14
WP_148184248.1|572049_572307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012656439.1|572528_573092_+	DUF5067 domain-containing protein	NA	H9A0K2	Staphylococcus_phage	34.4	3.5e-16
WP_157819663.1|573359_573521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635839.1|573610_573865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012656440.1|574042_574765_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	27.7	4.6e-13
WP_012656441.1|574834_575368_+	nitroreductase	NA	NA	NA	NA	NA
WP_012656442.1|575410_575734_-	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	30.6	9.2e-06
WP_012656443.1|575861_576215_+	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	M1PLC0	Streptococcus_phage	43.7	1.3e-16
WP_012656444.1|576288_576657_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_012656445.1|576724_577114_+	topiosmerase	NA	NA	NA	NA	NA
WP_041635840.1|577085_577397_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_148184250.1|577542_578649_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	33.3	3.3e-26
>prophage 3
NC_011999	Macrococcus caseolyticus JCSC5402, complete genome	2102324	739939	748328	2102324		Synechococcus_phage(50.0%)	9	NA	NA
WP_041635867.1|739939_740422_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.4	1.7e-19
WP_012656596.1|740408_741527_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_012656597.1|741523_742225_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	41.6	8.0e-47
WP_012656598.1|742226_742487_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_012656599.1|742486_743149_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_012656600.1|743151_745338_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	38.1	9.6e-139
WP_041635868.1|745316_746735_+	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	28.5	2.3e-48
WP_012656602.1|746737_747760_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	39.8	5.1e-58
WP_012656603.1|747761_748328_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	41.1	1.2e-29
>prophage 4
NC_011999	Macrococcus caseolyticus JCSC5402, complete genome	2102324	977329	1065189	2102324	tRNA,portal,capsid,integrase,tail,terminase,head,holin	Staphylococcus_phage(38.46%)	131	997810:997826	1044940:1044956
WP_012656793.1|977329_978859_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_012656794.1|978861_979287_+	YlbF family regulator	NA	NA	NA	NA	NA
WP_012656795.1|979376_981917_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	4.2e-45
WP_012656796.1|981926_983828_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	31.7	3.5e-60
WP_012656797.1|983827_984370_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_012656798.1|984503_985322_+	aquaporin family protein	NA	NA	NA	NA	NA
WP_012656799.1|985340_986834_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_012656800.1|986854_988528_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_012656801.1|988656_989553_+	alpha/beta hydrolase	NA	A7XCB7	Tanapox_virus	27.4	5.2e-06
WP_012656802.1|989545_990484_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_012656803.1|990709_991183_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	40.1	7.6e-25
WP_012656804.1|991241_992519_+	GTPase HflX	NA	NA	NA	NA	NA
WP_012656805.1|992523_993783_+	methionine gamma-lyase family protein	NA	NA	NA	NA	NA
WP_041635912.1|993869_994223_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012656807.1|994239_995577_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_012656808.1|995685_996810_-|integrase	site-specific integrase	integrase	A8ATM2	Listeria_phage	28.8	4.0e-24
WP_012656809.1|996936_997887_-	Abi family protein	NA	NA	NA	NA	NA
997810:997826	attL	ATCAATATCATTATTTT	NA	NA	NA	NA
WP_041635913.1|997988_998372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041635914.1|998450_999476_-	SAP domain-containing protein	NA	NA	NA	NA	NA
WP_012656812.1|999505_999991_-	hypothetical protein	NA	A0A2H4JD66	uncultured_Caudovirales_phage	55.9	3.5e-49
WP_012656813.1|1000003_1000339_-	helix-turn-helix transcriptional regulator	NA	A0A223LGP9	Staphylococcus_phage	59.8	4.9e-26
WP_041635915.1|1000520_1000760_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	77.6	2.2e-28
WP_012656814.1|1000775_1001495_+	phage antirepressor KilAC domain-containing protein	NA	Q8SDM9	Staphylococcus_phage	63.3	7.6e-85
WP_041635917.1|1001874_1002063_+	helix-turn-helix transcriptional regulator	NA	A0A0H4IP57	Staphylococcus_phage	68.3	4.1e-14
WP_041635918.1|1002059_1002275_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635919.1|1002271_1002535_-	CRISPR-associated endonuclease Cas2	NA	A0A0N9STP5	Staphylococcus_phage	65.5	2.9e-26
WP_050742472.1|1002674_1002866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158298070.1|1002862_1003039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157827427.1|1003117_1003291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148184259.1|1003321_1003576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158298071.1|1003616_1003772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012656815.1|1003859_1004114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635923.1|1004103_1004307_+	helix-turn-helix transcriptional regulator	NA	A0A1W6JPB6	Staphylococcus_phage	43.9	9.8e-06
WP_012656817.1|1005225_1006026_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	A0A290GJV0	Caldibacillus_phage	51.9	1.5e-65
WP_012656818.1|1006044_1006371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012656819.1|1006363_1006822_+	single-stranded DNA-binding protein	NA	A0A1Q1PW11	Staphylococcus_phage	56.1	1.5e-41
WP_012656820.1|1006850_1007741_+	DnaD domain protein	NA	A0A1Q1PVU4	Staphylococcus_phage	55.4	2.2e-57
WP_041635924.1|1007741_1007987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012656821.1|1007998_1008364_+	hypothetical protein	NA	B5SP14	Lactococcus_phage	32.4	3.5e-09
WP_157820996.1|1008360_1008531_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635925.1|1008534_1009062_+	dUTP diphosphatase	NA	NA	NA	NA	NA
WP_157821483.1|1009158_1009317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012656823.1|1009303_1009729_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A1D6Z252	Staphylococcus_phage	56.5	3.5e-37
WP_070105570.1|1010356_1010677_+	DUF3310 domain-containing protein	NA	A0A1D6Z251	Staphylococcus_phage	52.4	5.2e-17
WP_012656825.1|1010745_1011306_+	hypothetical protein	NA	A0A2H4J6J3	uncultured_Caudovirales_phage	30.5	5.3e-09
WP_012656826.1|1011451_1011718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635927.1|1012080_1012560_+|terminase	terminase small subunit	terminase	A0A0N9BAX3	Staphylococcus_phage	43.3	1.5e-23
WP_012656828.1|1012552_1013803_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0H3U2R6	Staphylococcus_phage	79.9	9.2e-195
WP_148184261.1|1013812_1015252_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	59.6	1.1e-154
WP_050742428.1|1015232_1017017_+|capsid	minor capsid protein	capsid	Q4ZE35	Staphylococcus_virus	41.9	3.9e-61
WP_041635928.1|1017077_1017431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635929.1|1017580_1018180_+	DUF4355 domain-containing protein	NA	H9A0N2	Staphylococcus_phage	33.3	1.3e-05
WP_012656833.1|1018195_1019107_+	hypothetical protein	NA	Q4ZE33	Staphylococcus_virus	75.7	4.8e-124
WP_041635931.1|1019152_1019419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012656834.1|1019402_1019726_+|head,tail	phage head-tail connector protein	head,tail	A0A1W6JNR3	Staphylococcus_phage	45.9	2.3e-17
WP_041635933.1|1019725_1020028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012656835.1|1020021_1020366_+	HK97 gp10 family phage protein	NA	I1W643	Staphylococcus_phage	36.9	1.9e-09
WP_012656836.1|1020370_1020754_+	DUF3168 domain-containing protein	NA	B7T0D6	Staphylococcus_virus	28.2	1.1e-08
WP_012656837.1|1020765_1021320_+|tail	phage major tail protein, TP901-1 family	tail	A0A2P1JTU8	Anoxybacillus_phage	39.9	8.1e-26
WP_012656838.1|1021385_1021763_+|tail	tail assembly chaperone	tail	A0A1J0MFH0	Staphylococcus_phage	50.4	9.4e-26
WP_012656839.1|1021780_1022128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012656840.1|1022142_1025400_+	hypothetical protein	NA	Q4ZC60	Staphylococcus_virus	40.0	5.0e-91
WP_148184263.1|1025503_1026688_+	hypothetical protein	NA	A0A0B5CU25	Listeria_phage	32.4	1.9e-16
WP_041635935.1|1026730_1027543_+|tail	phage tail family protein	tail	NA	NA	NA	NA
WP_012656841.1|1027539_1029714_+|tail	phage tail protein	tail	A0A1Q1PW30	Staphylococcus_phage	43.3	4.6e-32
WP_193330447.1|1029661_1030345_+	hypothetical protein	NA	Q4ZD63	Staphylococcus_phage	74.5	2.8e-44
WP_158298072.1|1030337_1030505_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635936.1|1030550_1030826_+	hypothetical protein	NA	Q4ZD61	Staphylococcus_phage	65.1	1.8e-26
WP_012656843.1|1030839_1031352_+|holin	phage holin family protein	holin	H9A0W5	Staphylococcus_phage	53.6	3.5e-39
WP_050742430.1|1031407_1032268_+	N-acetylmuramoyl-L-alanine amidase	NA	M1PRV7	Streptococcus_phage	38.1	9.2e-45
WP_012656845.1|1032925_1034080_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JCB7	uncultured_Caudovirales_phage	25.6	3.9e-22
WP_012656846.1|1034084_1034546_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_148184264.1|1034668_1034893_+	hypothetical protein	NA	A0A0K1LLB1	Staphylococcus_phage	46.9	1.3e-06
WP_083754297.1|1034883_1035198_-	hypothetical protein	NA	A0A0K1LKD8	Staphylococcus_phage	63.0	9.5e-32
WP_012656848.1|1035809_1036889_-	DUF4352 domain-containing protein	NA	NA	NA	NA	NA
WP_012656849.1|1036901_1037975_-	type I restriction enzyme HsdR N-terminal domain-containing protein	NA	A0A1S5SAB0	Streptococcus_phage	46.2	7.6e-89
WP_041635938.1|1038496_1038748_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012656850.1|1038863_1039367_+	hypothetical protein	NA	A0A290FZK9	Caldibacillus_phage	26.9	3.1e-08
WP_050742431.1|1039377_1039938_+	helix-turn-helix transcriptional regulator	NA	H9A0L8	Staphylococcus_phage	63.9	1.8e-12
WP_041635940.1|1039938_1040184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635941.1|1040185_1040377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635943.1|1040470_1040707_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041635944.1|1040845_1041607_+	phage antirepressor KilAC domain-containing protein	NA	A0A2H4JCT2	uncultured_Caudovirales_phage	77.1	1.3e-103
WP_041635945.1|1041603_1041795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012656853.1|1041996_1042938_+	YqaJ viral recombinase family protein	NA	A0A2H4JA52	uncultured_Caudovirales_phage	46.2	8.5e-76
WP_012656854.1|1042943_1043774_+	recombination protein RecT	NA	S6AVW6	Thermus_phage	64.5	5.3e-90
WP_012656855.1|1043805_1044396_+	phage replisome organizer N-terminal domain-containing protein	NA	A0A1S5SAV1	Streptococcus_phage	52.5	8.3e-29
WP_041635947.1|1044367_1044697_+	DnaD domain protein	NA	A0A0P0HRQ2	Lactobacillus_phage	41.8	2.6e-08
WP_041635949.1|1044674_1045460_+	ATP-binding protein	NA	A0A2I6PDA0	Staphylococcus_phage	35.8	6.1e-35
1044940:1044956	attR	AAAATAATGATATTGAT	NA	NA	NA	NA
WP_041635950.1|1045485_1045809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158298073.1|1045801_1045978_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158298074.1|1045949_1046126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012656859.1|1046122_1046632_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	58.6	6.2e-49
WP_041635952.1|1046658_1046937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635954.1|1046933_1047113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635956.1|1047362_1047596_+	phage protein	NA	A0A2H4JCC5	uncultured_Caudovirales_phage	54.8	1.5e-13
WP_012656860.1|1047598_1048111_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_041635957.1|1048122_1048629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157820998.1|1048641_1048815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635959.1|1048817_1049039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635960.1|1049051_1049294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635961.1|1049321_1049513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635962.1|1049514_1049739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635963.1|1049769_1049994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635965.1|1050062_1050257_+	hypothetical protein	NA	A0A076G540	Staphylococcus_phage	52.5	6.1e-13
WP_041635966.1|1050278_1050497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635967.1|1050518_1050698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158298075.1|1050718_1050889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635968.1|1051010_1051373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157820996.1|1051369_1051540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148184302.1|1051552_1051846_+	hypothetical protein	NA	A0A142F1R8	Bacillus_phage	68.4	4.0e-32
WP_157821164.1|1051860_1052034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012656864.1|1052548_1052953_+	hypothetical protein	NA	A0A290FZR5	Caldibacillus_phage	36.4	1.7e-12
WP_012656865.1|1053019_1053892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635969.1|1054172_1054376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012656866.1|1054488_1055202_+	hypothetical protein	NA	A0A2P1JTW4	Anoxybacillus_phage	36.6	5.2e-25
WP_012656867.1|1055198_1056491_+|terminase	PBSX family phage terminase large subunit	terminase	A0A2P1JTW5	Anoxybacillus_phage	58.7	3.7e-130
WP_012656868.1|1056503_1058123_+	hypothetical protein	NA	A0A1U9WQP5	Geobacillus_phage	46.8	1.9e-131
WP_012656869.1|1058127_1059216_+	hypothetical protein	NA	A0A2H4J2F6	uncultured_Caudovirales_phage	42.5	5.2e-69
WP_050742432.1|1059190_1059502_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_167313621.1|1059518_1059668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012656871.1|1060006_1060612_+	phage scaffolding protein	NA	L0P7B0	Lactobacillus_phage	28.7	1.4e-15
WP_012656872.1|1060625_1061000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012656873.1|1061026_1062031_+|capsid	major capsid protein	capsid	A0A2H4J2G1	uncultured_Caudovirales_phage	43.2	1.4e-68
WP_041635970.1|1062072_1062348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012656874.1|1062365_1062749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012656875.1|1062748_1063093_+	hypothetical protein	NA	A0A218KCG8	Bacillus_phage	39.1	4.5e-11
WP_041635971.1|1063082_1063565_+	HK97 gp10 family phage protein	NA	A0A1U9WQQ7	Geobacillus_phage	48.1	4.5e-33
WP_012656877.1|1063569_1063950_+	hypothetical protein	NA	A0A2H4JAC9	uncultured_Caudovirales_phage	40.7	8.0e-17
WP_012656878.1|1064013_1064592_+	hypothetical protein	NA	M4ZS18	Bacillus_phage	39.4	1.2e-32
WP_012656879.1|1064667_1065189_+	hypothetical protein	NA	A0A218KCI2	Bacillus_phage	33.8	2.5e-08
>prophage 5
NC_011999	Macrococcus caseolyticus JCSC5402, complete genome	2102324	1071402	1081914	2102324	tail,holin	Staphylococcus_phage(85.71%)	11	NA	NA
WP_012656883.1|1071402_1071837_+	hypothetical protein	NA	A0A286QMT6	Streptococcus_phage	30.5	7.3e-06
WP_012656884.1|1071836_1075232_+|tail	phage tail protein	tail	A0A1Q1PW30	Staphylococcus_phage	32.8	4.7e-76
WP_158298076.1|1075224_1075392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041635973.1|1075436_1075715_+	hypothetical protein	NA	Q4ZD61	Staphylococcus_phage	65.9	1.3e-24
WP_012656885.1|1075728_1076241_+|holin	phage holin family protein	holin	H9A0W5	Staphylococcus_phage	54.3	2.0e-39
WP_012656886.1|1076346_1077309_+	family 20 glycosylhydrolase	NA	NA	NA	NA	NA
WP_050742433.1|1077385_1077652_+|holin	phage holin	holin	A0A1D6Z272	Staphylococcus_phage	43.1	1.2e-06
WP_012656887.1|1077654_1078560_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JQL2	Staphylococcus_phage	62.4	3.1e-75
WP_012656888.1|1078894_1080259_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_012656889.1|1080251_1080857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148184265.1|1081476_1081914_-	YolD-like family protein	NA	A0A1Q1PW34	Staphylococcus_phage	39.8	1.6e-16
>prophage 6
NC_011999	Macrococcus caseolyticus JCSC5402, complete genome	2102324	1370303	1388278	2102324	tRNA	uncultured_Mediterranean_phage(27.27%)	14	NA	NA
WP_012657172.1|1370303_1372082_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	28.1	1.1e-15
WP_012657173.1|1372085_1373348_-|tRNA	histidine--tRNA ligase	tRNA	A0A2I2L577	Orpheovirus	25.4	3.4e-19
WP_012657174.1|1373647_1374493_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N9SGH1	Paenibacillus_phage	34.5	5.2e-16
WP_012657175.1|1374489_1374942_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_012657176.1|1374950_1377143_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	39.7	2.4e-12
WP_012657177.1|1377247_1377769_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	9.6e-29
WP_041636043.1|1377779_1380047_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.1	4.9e-69
WP_041636044.1|1380068_1381184_-	amidohydrolase	NA	NA	NA	NA	NA
WP_012657180.1|1381176_1382292_-	dipeptide epimerase	NA	Q6A202	Oenococcus_phage	25.3	3.5e-12
WP_012657181.1|1382443_1384735_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	31.4	4.2e-28
WP_041636045.1|1384798_1385077_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	37.5	3.8e-08
WP_012657182.1|1385088_1386228_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.1	1.9e-85
WP_012657183.1|1386239_1387262_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_012657184.1|1387264_1388278_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.3	6.2e-08
>prophage 7
NC_011999	Macrococcus caseolyticus JCSC5402, complete genome	2102324	1567039	1575114	2102324	transposase	Staphylococcus_phage(62.5%)	9	NA	NA
WP_012657352.1|1567039_1567771_+|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	47.3	7.6e-40
WP_012657353.1|1567817_1568555_-	nicotinamide mononucleotide transporter	NA	U5J9C5	Bacillus_phage	37.4	5.0e-31
WP_012657354.1|1568565_1569660_-	AAA family ATPase	NA	A0A2K9VDE3	Lactobacillus_phage	37.4	1.7e-67
WP_041636092.1|1569954_1570512_-	energy-coupled thiamine transporter ThiT	NA	NA	NA	NA	NA
WP_012657356.1|1570780_1571773_+	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	59.5	8.3e-106
WP_012657357.1|1571809_1572274_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	69.3	1.4e-42
WP_012657358.1|1572270_1573461_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	58.1	2.4e-128
WP_012657359.1|1573460_1574084_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	44.4	5.3e-42
WP_012657360.1|1574088_1575114_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	38.6	2.4e-60
>prophage 8
NC_011999	Macrococcus caseolyticus JCSC5402, complete genome	2102324	1614773	1629860	2102324		Staphylococcus_phage(80.0%)	16	NA	NA
WP_012657398.1|1614773_1618304_-	S8 family serine peptidase	NA	A0A217EQY2	Bacillus_phage	35.9	5.5e-19
WP_041636108.1|1618398_1618593_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012657399.1|1618697_1619408_-	transaldolase	NA	E3SKN5	Synechococcus_phage	35.1	4.2e-19
WP_041636109.1|1619542_1619839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012657400.1|1619877_1620213_+	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	42.1	3.9e-07
WP_012657401.1|1620209_1620542_+	CrcB family protein	NA	NA	NA	NA	NA
WP_041636110.1|1620686_1621601_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	44.8	7.3e-56
WP_157819830.1|1621818_1621989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012657403.1|1622030_1623221_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	78.6	3.7e-169
WP_041636111.1|1623608_1625201_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	70.0	2.7e-215
WP_050742445.1|1625250_1626009_-	prolyl oligopeptidase family serine peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	49.2	3.3e-54
WP_012657406.1|1625986_1626466_-	nucleoside triphosphatase YtkD	NA	NA	NA	NA	NA
WP_041636113.1|1626503_1627262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041636114.1|1627271_1627496_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	65.8	1.8e-24
WP_012657408.1|1627531_1628494_-	hypothetical protein	NA	A0A2H4PQM0	Staphylococcus_phage	34.7	3.6e-37
WP_041636116.1|1628477_1629860_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	41.3	7.5e-89
>prophage 9
NC_011999	Macrococcus caseolyticus JCSC5402, complete genome	2102324	1637652	1670491	2102324	portal,capsid,integrase,tail,terminase,head,protease,holin	Staphylococcus_phage(65.38%)	48	1636724:1636783	1670746:1670825
1636724:1636783	attL	TGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTAACAGCCGATAGCTCTACCA	NA	NA	NA	NA
WP_070105564.1|1637652_1638429_-	CHAP domain-containing protein	NA	Q4ZC44	Staphylococcus_virus	57.8	1.2e-48
WP_012657417.1|1638468_1638771_-|holin	phage holin	holin	A0A0H3UYV6	Geobacillus_virus	44.9	5.6e-13
WP_041636120.1|1638790_1639231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041636121.1|1639293_1639581_-	hypothetical protein	NA	Q4ZD61	Staphylococcus_phage	61.8	2.1e-25
WP_158298082.1|1639626_1639794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012657419.1|1639786_1644463_-	hypothetical protein	NA	A0A1Q1PVY1	Staphylococcus_phage	37.3	8.6e-254
WP_083754283.1|1644478_1645561_-|tail	phage tail family protein	tail	A0A1Q1PVY2	Staphylococcus_phage	59.4	2.4e-122
WP_050742447.1|1645567_1645999_-|tail	phage tail family protein	tail	A0A2H4J1X6	uncultured_Caudovirales_phage	51.0	5.0e-39
WP_012657422.1|1646008_1650370_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A2H4J669	uncultured_Caudovirales_phage	36.9	3.6e-84
WP_158298083.1|1650394_1650544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012657423.1|1650603_1650957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012657424.1|1651027_1651615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012657425.1|1651627_1652017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012657426.1|1652013_1652406_-	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	33.3	2.8e-09
WP_012657427.1|1652402_1652726_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_012657428.1|1652694_1653039_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A0D4DBY0	Staphylococcus_phage	33.7	8.9e-07
WP_041636124.1|1653010_1653217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012657429.1|1653231_1654365_-|capsid	phage major capsid protein	capsid	A0A2H4J7D0	uncultured_Caudovirales_phage	34.7	1.0e-35
WP_041636125.1|1654374_1654944_-|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	48.8	2.3e-44
WP_012657431.1|1654927_1656169_-|portal	phage portal protein	portal	A0A0D4DC70	Staphylococcus_phage	32.6	2.2e-47
WP_157827310.1|1656172_1656346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012657432.1|1656342_1658049_-|terminase	terminase	terminase	D2JLE4	Staphylococcus_phage	51.2	1.8e-156
WP_012657433.1|1658045_1658531_-|terminase	phage terminase small subunit P27 family	terminase	D7PQ38	Enterococcus_phage	35.5	5.8e-12
WP_041636483.1|1658662_1659010_-	HNH endonuclease	NA	A0A2H4J3B4	uncultured_Caudovirales_phage	47.7	6.4e-21
WP_012657435.1|1659198_1659615_-	hypothetical protein	NA	A0A1D6Z235	Staphylococcus_phage	37.2	4.6e-18
WP_157820257.1|1659847_1660021_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041636127.1|1660101_1660302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012657436.1|1660294_1660657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012657437.1|1660649_1661084_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041636128.1|1661080_1661266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012657438.1|1661262_1661571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148184307.1|1661721_1662069_-	hypothetical protein	NA	Q4ZD40	Staphylococcus_phage	61.4	1.0e-18
WP_158298084.1|1662098_1662251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041636130.1|1662261_1662774_-	Holliday junction resolvase RecU	NA	R9TMF8	Paenibacillus_phage	34.8	2.0e-15
WP_041636131.1|1662894_1663083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041636132.1|1663096_1663345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041636134.1|1663367_1663850_-	single-stranded DNA-binding protein	NA	H9A0L6	Staphylococcus_phage	71.0	7.2e-55
WP_012657441.1|1663839_1664172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041636135.1|1664507_1664810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012657443.1|1664802_1665759_-	DnaD domain protein	NA	A0A1J0MGB2	Staphylococcus_phage	60.6	1.2e-32
WP_041636137.1|1665795_1666056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041636138.1|1666045_1666804_-	phage antirepressor KilAC domain-containing protein	NA	Q8SDM9	Staphylococcus_phage	71.5	1.7e-95
WP_041636139.1|1666893_1667082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012657445.1|1667078_1667387_-	DUF771 domain-containing protein	NA	A0A1W6JPI1	Staphylococcus_phage	36.5	6.7e-06
WP_041636140.1|1667409_1667631_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFH4	Staphylococcus_phage	62.3	2.9e-19
WP_012657446.1|1667768_1668398_+	helix-turn-helix domain-containing protein	NA	A0A1J0MG99	Staphylococcus_phage	64.6	2.6e-73
WP_041636142.1|1668469_1669321_+	HIRAN domain-containing protein	NA	A0A1X9H037	Staphylococcus_phage	23.8	3.3e-10
WP_012657448.1|1669432_1670491_+|integrase	site-specific integrase	integrase	A0A2H4JGN1	uncultured_Caudovirales_phage	44.9	2.7e-86
1670746:1670825	attR	TGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTAACAGCCGATAGCTCTACCACTGAGCTACTGTGGATTAAT	NA	NA	NA	NA
>prophage 1
NC_011996	Macrococcus caseolyticus JCSC5402 plasmid pMCCL2, complete sequence	80545	17669	64009	80545	protease,transposase	Streptococcus_phage(23.81%)	51	NA	NA
WP_012655858.1|17669_18110_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_158298086.1|18298_19555_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_012655860.1|19551_20037_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_012655861.1|20070_20394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143935715.1|20476_20695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148184321.1|21001_21646_+	class A sortase	NA	NA	NA	NA	NA
WP_148184323.1|21891_23021_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	55.0	2.0e-79
WP_041636585.1|23326_23704_-	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA	NA
WP_012655866.1|23720_25424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012655867.1|25507_27532_+	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecB	NA	NA	NA	NA	NA
WP_041636568.1|27538_28399_+	class A beta-lactamase	NA	A0A1B0VBP7	Salmonella_phage	31.2	1.4e-24
WP_012655869.1|28721_29954_+	DNA adenine methylase	NA	A0A1P8BMM5	Lactococcus_phage	29.6	7.5e-32
WP_148184329.1|30042_30894_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A2K9VFX1	Escherichia_phage	35.3	5.9e-36
WP_148184331.1|30958_32716_+	AlwI family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_041636569.1|33057_33249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012655872.1|33251_33653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012655873.1|33812_34469_+	TIR domain-containing protein	NA	NA	NA	NA	NA
WP_012655874.1|34443_35154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012655875.1|35488_35788_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_050742488.1|35870_36128_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012655876.1|36346_36928_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	49.4	1.6e-40
WP_012655877.1|37166_37616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041636570.1|37627_37999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148184327.1|38034_38331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041636571.1|38757_39717_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	34.7	5.1e-36
WP_012655880.1|39932_41168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012655881.1|41205_42165_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.0	7.9e-37
WP_012655882.1|42411_42705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050742489.1|42691_43138_+	YolD-like family protein	NA	A0A1Q1PW34	Staphylococcus_phage	40.9	4.0e-15
WP_001015311.1|43175_43856_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_012655884.1|44168_45644_+	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	99.8	3.3e-284
WP_001814874.1|46016_46100_+	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_002292226.1|46224_46962_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
WP_000576156.1|47316_47871_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	52.1	2.3e-36
WP_001240982.1|47874_50793_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.1	1.1e-169
WP_012655885.1|51099_54063_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	39.9	6.8e-212
WP_050742490.1|54172_54406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012655886.1|54617_54935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001015311.1|55373_56054_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_025906309.1|56137_56410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012655887.1|56431_56737_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012655888.1|56764_57376_-	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	36.6	1.8e-18
WP_012655889.1|57702_58278_+	recombinase family protein	NA	M9Q1K0	Clostridium_phage	30.8	1.2e-16
WP_025906304.1|58361_58853_+	dihydrofolate reductase	NA	A0A076GDN3	Bacillus_phage	40.9	2.9e-27
WP_012655891.1|58849_59557_+	FAD-dependent thymidylate synthase	NA	M1IEJ2	Bacillus_phage	60.6	8.0e-79
WP_012655892.1|60100_60553_+	JAB domain-containing protein	NA	A0A1B2LRS6	Wolbachia_phage	36.1	4.9e-13
WP_041636572.1|60625_60982_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012655894.1|61565_61955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041636573.1|62574_62823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041636574.1|62886_63117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012655895.1|63202_64009_+	ParA family protein	NA	A0A1X9I765	Streptococcus_phage	35.8	8.7e-37
