assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000011045.1_ASM1104v1	NC_017482	Lactobacillus rhamnosus GG, complete genome	1	897651-897752	1	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,Cas14u_CAS-V,PrimPol,RT,csn2,cas2,cas1,cas9,cas14j,cas3	Orphan	GGTATAATGAAGTTGGAGATTGGAAGGGTTTTACCC	36	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,Cas14u_CAS-V,PrimPol,RT,csn2,cas2,cas1,cas9,cas14j,cas3	NA,NA|67aa|down_1|NC_017482.1_898644_898845_+,NA|46aa|down_5|NC_017482.1_904285_904423_+	NA|431aa|up_9|NC_017482.1_886508_887801_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|243aa|up_8|NC_017482.1_887800_888529_+	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|312aa|up_7|NC_017482.1_888615_889551_+	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|197aa|up_6|NC_017482.1_889547_890138_+	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|414aa|up_5|NC_017482.1_890358_891600_+	PRK00549, PRK00549, competence damage-inducible protein A; Provisional	NA|351aa|up_4|NC_017482.1_891651_892704_+	PRK09354, recA, recombinase A; Provisional	NA|524aa|up_3|NC_017482.1_893328_894900_+	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|219aa|up_2|NC_017482.1_894988_895645_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|422aa|up_1|NC_017482.1_895672_896938_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|173aa|up_0|NC_017482.1_897096_897615_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|186aa|down_0|NC_017482.1_897806_898364_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|67aa|down_1|NC_017482.1_898644_898845_+	NA	NA|788aa|down_2|NC_017482.1_898946_901310_+	PRK12906, secA, preprotein translocase subunit SecA; Reviewed	NA|229aa|down_3|NC_017482.1_902644_903331_+	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|296aa|down_4|NC_017482.1_903320_904208_+	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|46aa|down_5|NC_017482.1_904285_904423_+	NA	NA|366aa|down_6|NC_017482.1_904478_905576_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|235aa|down_7|NC_017482.1_905572_906277_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|556aa|down_8|NC_017482.1_906269_907937_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|289aa|down_9|NC_017482.1_908026_908893_+	TIGR02136, ptsS_2, phosphate binding protein
GCF_000011045.1_ASM1104v1	NC_017482	Lactobacillus rhamnosus GG, complete genome	2	2260261-2261880	1,2,1	CRT,CRISPRCasFinder,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,WYL,DEDDh,Cas14u_CAS-V,PrimPol,RT,csn2,cas2,cas1,cas9,cas14j,cas3	Type II-B,Type II-C,Type II-A	GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC,GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC,GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	36,36,36	1	1	2261023-2261052	NC_017482.1_1114215-1114186	NA:NA:NA	24,23,16	24	TypeII-B,TypeII-C,TypeII-A	csa3,DinG,WYL,DEDDh,Cas14u_CAS-V,PrimPol,RT,csn2,cas2,cas1,cas9,cas14j,cas3	NA|367aa|up_0|NC_017482.1_2258412_2259513_-,NA	NA|132aa|up_9|NC_017482.1_2246398_2246794_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|289aa|up_8|NC_017482.1_2246783_2247650_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|215aa|up_7|NC_017482.1_2247642_2248287_+	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|262aa|up_6|NC_017482.1_2248352_2249138_-	PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional	NA|612aa|up_5|NC_017482.1_2251073_2252909_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|291aa|up_4|NC_017482.1_2253276_2254149_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|541aa|up_3|NC_017482.1_2254280_2255903_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|565aa|up_2|NC_017482.1_2255895_2257590_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|142aa|up_1|NC_017482.1_2257801_2258227_-	pfam07009, NusG_II, NusG domain II	NA|367aa|up_0|NC_017482.1_2258412_2259513_-	NA	csn2|227aa|down_0|NC_017482.1_2261900_2262581_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NC_017482.1_2262577_2262883_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NC_017482.1_2262860_2263766_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1364aa|down_3|NC_017482.1_2263971_2268063_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|576aa|down_4|NC_017482.1_2268341_2270069_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|581aa|down_5|NC_017482.1_2270049_2271792_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|338aa|down_6|NC_017482.1_2271788_2272802_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|475aa|down_7|NC_017482.1_2272798_2274223_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|435aa|down_8|NC_017482.1_2274454_2275759_-	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|340aa|down_9|NC_017482.1_2275858_2276878_+	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively
GCF_000011045.1_ASM1104v1	NC_017482	Lactobacillus rhamnosus GG, complete genome	3	2509314-2509467	3	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,Cas14u_CAS-V,PrimPol,RT,csn2,cas2,cas1,cas9,cas14j,cas3	Orphan	CGGCCATTGTGACTGAGGCCGCTTATGTTCCGGCTTACTCCCATAACGCGC	51	1	4	2509365-2509416|2509365-2509416|2509365-2509416|2509365-2509416	NC_017482.1_1340445-1340394|NC_017482.1_2281607-2281556|NC_017482.1_1511530-1511479|NC_017482.1_2212555-2212606	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,Cas14u_CAS-V,PrimPol,RT,csn2,cas2,cas1,cas9,cas14j,cas3	NA,NA	NA|117aa|up_9|NC_017482.1_2496711_2497062_-	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|137aa|up_8|NC_017482.1_2497055_2497466_-	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|505aa|up_7|NC_017482.1_2497969_2499484_-	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	NA|908aa|up_6|NC_017482.1_2500121_2502845_+	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain	NA|325aa|up_5|NC_017482.1_2503050_2504025_-	cd13557, PBP2_SsuA, Substrate binding domain of sulfonate binding protein, a member of the type 2 periplasmic binding fold superfamily	NA|511aa|up_4|NC_017482.1_2504014_2505547_-	cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis	NA|414aa|up_3|NC_017482.1_2505497_2506739_-	pfam01757, Acyl_transf_3, Acyltransferase family	NA|234aa|up_2|NC_017482.1_2506735_2507437_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|273aa|up_1|NC_017482.1_2507429_2508248_-	PRK11365, ssuC, aliphatic sulfonate ABC transporter permease SsuC	NA|223aa|up_0|NC_017482.1_2508488_2509157_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|612aa|down_0|NC_017482.1_2509847_2511683_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|597aa|down_1|NC_017482.1_2511669_2513460_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|395aa|down_2|NC_017482.1_2513684_2514869_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|298aa|down_3|NC_017482.1_2515241_2516135_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|179aa|down_4|NC_017482.1_2516086_2516623_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|131aa|down_5|NC_017482.1_2516744_2517137_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|149aa|down_6|NC_017482.1_2517150_2517597_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|206aa|down_7|NC_017482.1_2517863_2518481_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|353aa|down_8|NC_017482.1_2518561_2519620_+	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|237aa|down_9|NC_017482.1_2519621_2520332_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
