assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000011265.1_ASM1126v1	NC_003923	Staphylococcus aureus subsp. aureus MW2, complete genome	1	166817-166901	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	3	166843-166875|166843-166875|166843-166875	NC_003923.1_1067918-1067886|NC_003923.1_1440677-1440645|NC_003923.1_1992760-1992728	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|68aa|down_0|NC_003923.1_166962_167166_-	NA|413aa|up_9|NC_003923.1_155897_157136_+	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|402aa|up_8|NC_003923.1_157169_158375_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NC_003923.1_158385_158943_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NC_003923.1_158942_159830_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NC_003923.1_159883_161146_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NC_003923.1_161222_162368_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NC_003923.1_162432_162759_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NC_003923.1_162765_163149_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NC_003923.1_163575_165063_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NC_003923.1_165708_166668_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NC_003923.1_166962_167166_-	NA	NA|171aa|down_1|NC_003923.1_167343_167856_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NC_003923.1_168197_168938_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|325aa|down_3|NC_003923.1_168951_169926_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NC_003923.1_169922_170684_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NC_003923.1_170696_171728_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NC_003923.1_171944_172304_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NC_003923.1_172477_173503_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NC_003923.1_173888_175139_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NC_003923.1_175585_182761_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_000011265.1_ASM1126v1	NC_003923	Staphylococcus aureus subsp. aureus MW2, complete genome	2	290101-290291	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GTGCAAGTTGGCGGGGCCCCAACA	24	3	31	290125-290156|290125-290156|290125-290156|290125-290156|290125-290156|290181-290211|290181-290211|290181-290211|290181-290211|290181-290211|290181-290211|290181-290211|290181-290211|290181-290211|290181-290211|290181-290211|290181-290211|290181-290211|290181-290211|290181-290211|290181-290211|290181-290211|290181-290211|290181-290211|290181-290211|290236-290267|290236-290267|290236-290267|290236-290267|290236-290267|290236-290267	NC_003923.1_1142505-1142536|NC_003923.1_1226473-1226504|NC_003923.1_1226529-1226560|NC_003923.1_1678836-1678867|NC_003923.1_2776909-2776878|NC_003923.1_141481-141511|NC_003923.1_166797-166827|NC_003923.1_819350-819320|NC_003923.1_875781-875751|NC_003923.1_924483-924513|NC_003923.1_1041795-1041765|NC_003923.1_1041911-1041881|NC_003923.1_1350827-1350857|NC_003923.1_1440781-1440751|NC_003923.1_1483471-1483501|NC_003923.1_1483529-1483559|NC_003923.1_1992689-1992659|NC_003923.1_2371826-2371856|NC_003923.1_274945-274915|NC_003923.1_944088-944058|NC_003923.1_1483587-1483617|NC_003923.1_1698540-1698510|NC_003923.1_2611737-2611707|NC_003923.1_819292-819262|NC_003923.1_1142450-1142480|NC_003923.1_1142505-1142536|NC_003923.1_1226473-1226504|NC_003923.1_1226529-1226560|NC_003923.1_1678836-1678867|NC_003923.1_2776909-2776878|NC_003923.1_1664338-1664307	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_1|NC_003923.1_291364_291499_+,NA|131aa|down_6|NC_003923.1_295449_295842_+	NA|563aa|up_9|NC_003923.1_278581_280270_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|574aa|up_8|NC_003923.1_280302_282024_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|up_7|NC_003923.1_282167_282842_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|585aa|up_6|NC_003923.1_283085_284840_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|up_5|NC_003923.1_284842_285583_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|up_4|NC_003923.1_285695_286139_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|up_3|NC_003923.1_286131_286833_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|235aa|up_2|NC_003923.1_286940_287645_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|264aa|up_1|NC_003923.1_287793_288585_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|479aa|up_0|NC_003923.1_288600_290037_+	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|254aa|down_0|NC_003923.1_290584_291346_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|45aa|down_1|NC_003923.1_291364_291499_+	NA	NA|305aa|down_2|NC_003923.1_291596_292511_-	TIGR02152, Putative_ribokinase, ribokinase	NA|135aa|down_3|NC_003923.1_292538_292943_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|294aa|down_4|NC_003923.1_292957_293839_-	pfam06800, Sugar_transport, Sugar transport protein	NA|333aa|down_5|NC_003923.1_294070_295069_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|131aa|down_6|NC_003923.1_295449_295842_+	NA	NA|459aa|down_7|NC_003923.1_295969_297346_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|331aa|down_8|NC_003923.1_297579_298572_+	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|317aa|down_9|NC_003923.1_298897_299848_+	COG3942, COG3942, Surface antigen [General function prediction only]
GCF_000011265.1_ASM1126v1	NC_003923	Staphylococcus aureus subsp. aureus MW2, complete genome	3	656523-656611	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGAT	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NC_003923.1_653071_653179_+,NA|169aa|down_4|NC_003923.1_660362_660869_+,NA|239aa|down_5|NC_003923.1_661030_661747_+	NA|313aa|up_9|NC_003923.1_647271_648210_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NC_003923.1_648420_648957_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NC_003923.1_649125_649602_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NC_003923.1_649641_650937_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NC_003923.1_650964_651486_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NC_003923.1_651984_652995_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NC_003923.1_653071_653179_+	NA	NA|139aa|up_2|NC_003923.1_653271_653688_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NC_003923.1_653684_655346_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NC_003923.1_655736_656372_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NC_003923.1_656682_657570_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NC_003923.1_657718_658669_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NC_003923.1_658723_659443_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NC_003923.1_659426_660227_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NC_003923.1_660362_660869_+	NA	NA|239aa|down_5|NC_003923.1_661030_661747_+	NA	NA|263aa|down_6|NC_003923.1_661915_662704_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NC_003923.1_662953_663328_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NC_003923.1_664275_665205_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NC_003923.1_665399_665624_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_000011265.1_ASM1126v1	NC_003923	Staphylococcus aureus subsp. aureus MW2, complete genome	4	813797-813877	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	13	813823-813851|813823-813851|813823-813851|813823-813851|813823-813851|813823-813851|813823-813851|813823-813851|813823-813851|813823-813851|813823-813851|813823-813851|813823-813851	NC_003923.1_2776985-2777013|NC_003923.1_367936-367908|NC_003923.1_1226453-1226425|NC_003923.1_1483622-1483594|NC_003923.1_1841791-1841763|NC_003923.1_166832-166804|NC_003923.1_274910-274938|NC_003923.1_819257-819285|NC_003923.1_875746-875774|NC_003923.1_924518-924490|NC_003923.1_1142485-1142457|NC_003923.1_1142596-1142568|NC_003923.1_1664245-1664273	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_7|NC_003923.1_804710_804815_+,NA|36aa|up_5|NC_003923.1_806247_806355_+,NA	NA|191aa|up_9|NC_003923.1_801151_801724_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NC_003923.1_802137_804669_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NC_003923.1_804710_804815_+	NA	NA|370aa|up_6|NC_003923.1_804983_806094_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NC_003923.1_806247_806355_+	NA	NA|280aa|up_4|NC_003923.1_806502_807342_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NC_003923.1_807515_808166_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NC_003923.1_808162_808399_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NC_003923.1_808667_810653_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NC_003923.1_810660_813507_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NC_003923.1_814113_815046_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NC_003923.1_815051_815891_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NC_003923.1_815898_816384_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NC_003923.1_816391_817831_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NC_003923.1_817897_818833_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NC_003923.1_819597_820509_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NC_003923.1_820505_821501_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NC_003923.1_821611_822556_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NC_003923.1_823128_823716_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NC_003923.1_823958_824861_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_000011265.1_ASM1126v1	NC_003923	Staphylococcus aureus subsp. aureus MW2, complete genome	5	875680-875761	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	875704-875737	NC_003923.1_1440645-1440678	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|194aa|up_9|NC_003923.1_868783_869365_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NC_003923.1_869437_870055_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NC_003923.1_870209_870704_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NC_003923.1_871102_871525_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NC_003923.1_871672_872389_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NC_003923.1_872471_873011_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NC_003923.1_873160_873481_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NC_003923.1_873624_873981_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NC_003923.1_874138_874519_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NC_003923.1_874697_875576_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NC_003923.1_876316_876703_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NC_003923.1_876695_876992_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NC_003923.1_877241_878267_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NC_003923.1_878259_878955_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NC_003923.1_878972_879794_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NC_003923.1_880147_880342_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NC_003923.1_880574_881426_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NC_003923.1_881753_882515_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NC_003923.1_882612_883920_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NC_003923.1_884025_885276_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_000011265.1_ASM1126v1	NC_003923	Staphylococcus aureus subsp. aureus MW2, complete genome	6	1698537-1698622	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TCTGTGTTGGGGCCCCATCCCCAACTT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|49aa|down_3|NC_003923.1_1702627_1702774_-,NA|43aa|down_8|NC_003923.1_1705810_1705939_-	NA|208aa|up_9|NC_003923.1_1687273_1687897_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NC_003923.1_1687896_1689165_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NC_003923.1_1689176_1690100_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NC_003923.1_1690102_1690741_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NC_003923.1_1691025_1691334_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NC_003923.1_1691348_1691777_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NC_003923.1_1691780_1692041_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NC_003923.1_1692103_1694734_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NC_003923.1_1695076_1697554_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NC_003923.1_1697555_1698224_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NC_003923.1_1698804_1699923_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NC_003923.1_1699923_1701066_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NC_003923.1_1701377_1702391_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NC_003923.1_1702627_1702774_-	NA	NA|61aa|down_4|NC_003923.1_1702813_1702996_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NC_003923.1_1703095_1703518_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NC_003923.1_1703602_1704877_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NC_003923.1_1705037_1705811_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NC_003923.1_1705810_1705939_-	NA	NA|589aa|down_9|NC_003923.1_1706271_1708038_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_000011265.1_ASM1126v1	NC_003923	Staphylococcus aureus subsp. aureus MW2, complete genome	7	1784403-1784489	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	ATGCAAGTTGGGGTGGGGCCCCAACATAGA	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|33aa|down_4|NC_003923.1_1788813_1788912_-	NA|423aa|up_9|NC_003923.1_1768780_1770049_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|NC_003923.1_1770097_1771219_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|NC_003923.1_1771566_1772928_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|NC_003923.1_1773275_1775033_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|NC_003923.1_1775054_1776023_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|NC_003923.1_1776291_1777236_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|NC_003923.1_1777235_1778093_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|NC_003923.1_1778287_1779517_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|NC_003923.1_1779966_1783164_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|NC_003923.1_1783184_1784126_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|NC_003923.1_1784579_1785878_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|NC_003923.1_1786082_1786496_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|NC_003923.1_1786800_1787490_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|NC_003923.1_1787664_1788720_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|33aa|down_4|NC_003923.1_1788813_1788912_-	NA	NA|373aa|down_5|NC_003923.1_1789035_1790154_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_6|NC_003923.1_1790294_1790795_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_7|NC_003923.1_1791040_1792243_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_8|NC_003923.1_1792330_1793278_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_9|NC_003923.1_1793400_1793895_-	PRK00522, tpx, thiol peroxidase
GCF_000011265.1_ASM1126v1	NC_003923	Staphylococcus aureus subsp. aureus MW2, complete genome	8	2226064-2226144	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NC_003923.1_2220935_2221166_-,NA|364aa|up_0|NC_003923.1_2224955_2226047_+,NA|35aa|down_0|NC_003923.1_2226479_2226584_-,NA|53aa|down_1|NC_003923.1_2227263_2227422_+	NA|237aa|up_9|NC_003923.1_2216545_2217256_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NC_003923.1_2217376_2217820_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NC_003923.1_2218019_2218433_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NC_003923.1_2218890_2220264_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NC_003923.1_2220935_2221166_-	NA	NA|313aa|up_4|NC_003923.1_2221196_2222135_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NC_003923.1_2222570_2223236_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NC_003923.1_2223387_2223708_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NC_003923.1_2223709_2224690_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NC_003923.1_2224955_2226047_+	NA	NA|35aa|down_0|NC_003923.1_2226479_2226584_-	NA	NA|53aa|down_1|NC_003923.1_2227263_2227422_+	NA	NA|286aa|down_2|NC_003923.1_2228080_2228938_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NC_003923.1_2229005_2229788_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NC_003923.1_2230019_2231825_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NC_003923.1_2232505_2234044_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NC_003923.1_2234078_2236211_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NC_003923.1_2236222_2236657_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NC_003923.1_2236656_2237763_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_9|NC_003923.1_2245873_2247229_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_000011265.1_ASM1126v1	NC_003923	Staphylococcus aureus subsp. aureus MW2, complete genome	9	2238386-2238472	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	GCCAACTGATGTTTGCGTATCATTAGT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|364aa|up_9|NC_003923.1_2224955_2226047_+,NA|35aa|up_8|NC_003923.1_2226479_2226584_-,NA|53aa|up_7|NC_003923.1_2227263_2227422_+,NA	NA|364aa|up_9|NC_003923.1_2224955_2226047_+	NA	NA|35aa|up_8|NC_003923.1_2226479_2226584_-	NA	NA|53aa|up_7|NC_003923.1_2227263_2227422_+	NA	NA|286aa|up_6|NC_003923.1_2228080_2228938_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NC_003923.1_2229005_2229788_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NC_003923.1_2230019_2231825_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NC_003923.1_2232505_2234044_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NC_003923.1_2234078_2236211_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NC_003923.1_2236222_2236657_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NC_003923.1_2236656_2237763_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NC_003923.1_2245873_2247229_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NC_003923.1_2247255_2248188_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NC_003923.1_2248189_2248999_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NC_003923.1_2249187_2250096_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NC_003923.1_2256290_2257355_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NC_003923.1_2257502_2258945_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NC_003923.1_2259267_2259741_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NC_003923.1_2259839_2261183_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NC_003923.1_2261359_2262043_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NC_003923.1_2262061_2263249_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_000011265.1_ASM1126v1	NC_003923	Staphylococcus aureus subsp. aureus MW2, complete genome	10	2337571-2337656	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	1	2337601-2337626	NC_003923.1_1142404-1142379	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NC_003923.1_2328142_2328307_+,NA|106aa|up_8|NC_003923.1_2328551_2328869_+,NA|84aa|up_5|NC_003923.1_2333990_2334242_+,NA|57aa|up_0|NC_003923.1_2337381_2337552_+,NA	NA|55aa|up_9|NC_003923.1_2328142_2328307_+	NA	NA|106aa|up_8|NC_003923.1_2328551_2328869_+	NA	NA|1056aa|up_7|NC_003923.1_2329052_2332220_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_003923.1_2332336_2333602_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_003923.1_2333990_2334242_+	NA	NA|255aa|up_4|NC_003923.1_2334233_2334998_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_003923.1_2335159_2335600_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_003923.1_2335592_2336804_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_003923.1_2336905_2337256_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NC_003923.1_2337381_2337552_+	NA	NA|341aa|down_0|NC_003923.1_2337833_2338856_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_003923.1_2338875_2339475_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_003923.1_2339481_2339715_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_003923.1_2339720_2340167_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_003923.1_2340180_2340666_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_003923.1_2340662_2341922_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_003923.1_2341984_2342479_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_003923.1_2342480_2342987_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_003923.1_2343017_2344022_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_003923.1_2344191_2344797_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_000011265.1_ASM1126v1	NC_003923	Staphylococcus aureus subsp. aureus MW2, complete genome	11	2504458-2504536	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAACTTGCATTGTCTCTAGAAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|56aa|up_2|NC_003923.1_2500239_2500407_-,NA|36aa|down_0|NC_003923.1_2504842_2504950_-	NA|326aa|up_9|NC_003923.1_2493850_2494828_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|up_8|NC_003923.1_2494879_2495347_-	pfam06177, QueT, QueT transporter	NA|231aa|up_7|NC_003923.1_2495357_2496050_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|up_6|NC_003923.1_2496060_2497176_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|up_5|NC_003923.1_2497153_2498161_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|up_4|NC_003923.1_2498162_2499521_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|229aa|up_3|NC_003923.1_2499498_2500185_-	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|56aa|up_2|NC_003923.1_2500239_2500407_-	NA	NA|578aa|up_1|NC_003923.1_2500637_2502371_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|588aa|up_0|NC_003923.1_2502395_2504159_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|36aa|down_0|NC_003923.1_2504842_2504950_-	NA	NA|129aa|down_1|NC_003923.1_2505083_2505470_-	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|381aa|down_2|NC_003923.1_2505727_2506870_+	TIGR00045, Glycerate_kinase, glycerate kinase	NA|220aa|down_3|NC_003923.1_2506929_2507589_+	PHA02562, 46, endonuclease subunit; Provisional	NA|404aa|down_4|NC_003923.1_2507770_2508982_+	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|158aa|down_5|NC_003923.1_2509104_2509578_-	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|219aa|down_6|NC_003923.1_2509690_2510347_+	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|269aa|down_7|NC_003923.1_2510409_2511216_-	TIGR03729, acc_ester, putative phosphoesterase	NA|470aa|down_8|NC_003923.1_2511501_2512911_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|693aa|down_9|NC_003923.1_2513048_2515127_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
GCF_000011265.1_ASM1126v1	NC_003923	Staphylococcus aureus subsp. aureus MW2, complete genome	12	2644481-2644588	11	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	ATTATTATAAATAATAAGTACACTACGGTTTACAGTTGG	39	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|56aa|up_4|NC_003923.1_2638621_2638789_-,NA|64aa|up_1|NC_003923.1_2641472_2641664_+,NA|163aa|down_7|NC_003923.1_2652597_2653086_-	NA|57aa|up_9|NC_003923.1_2632731_2632902_-	pfam12669, P12, Virus attachment protein p12 family	NA|665aa|up_8|NC_003923.1_2632914_2634909_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|up_7|NC_003923.1_2634920_2635148_-	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]	NA|830aa|up_6|NC_003923.1_2635363_2637853_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|183aa|up_5|NC_003923.1_2637997_2638546_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|56aa|up_4|NC_003923.1_2638621_2638789_-	NA	NA|515aa|up_3|NC_003923.1_2638900_2640445_-	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional	NA|200aa|up_2|NC_003923.1_2640634_2641234_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|64aa|up_1|NC_003923.1_2641472_2641664_+	NA	NA|803aa|up_0|NC_003923.1_2641903_2644312_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|69aa|down_0|NC_003923.1_2644660_2644867_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|333aa|down_1|NC_003923.1_2644956_2645955_-	PRK08605, PRK08605, D-lactate dehydrogenase; Validated	NA|385aa|down_2|NC_003923.1_2645977_2647132_-	PRK08068, PRK08068, transaminase; Reviewed	NA|503aa|down_3|NC_003923.1_2647558_2649067_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|288aa|down_4|NC_003923.1_2649078_2649942_-	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism]	NA|376aa|down_5|NC_003923.1_2649978_2651106_-	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|498aa|down_6|NC_003923.1_2651111_2652605_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|163aa|down_7|NC_003923.1_2652597_2653086_-	NA	NA|256aa|down_8|NC_003923.1_2653260_2654028_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|604aa|down_9|NC_003923.1_2654388_2656200_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]
