bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2.1|812251|29|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	100.00	29	0	0	1	29	2756325	2756353	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	5e-08	47.5	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	2756325-2756353	TGCATTGTTTGTAGAATTTCTTTTCGAAA	0
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2.1|812251|29|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	96.55	29	1	0	1	29	366581	366553	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	5e-07	44.4	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	366553-366581	TTTCGAAAAGAAATTCTACAAGCAATGCA	1
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2.1|812251|29|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	96.55	29	1	0	1	29	1509269	1509241	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	5e-07	44.4	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	1509241-1509269	TTTCGAAAAGAAATTCTACAGACAATGCA	1
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2.1|812251|29|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	96.55	29	1	0	1	29	1821126	1821098	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	5e-07	44.4	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	1821098-1821126	TTTCGAAAAGAAATTCTACAGACAATGCA	1
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2.1|812251|29|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	93.10	29	2	0	1	29	165532	165504	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	4e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	165504-165532	TTTCGAAAAGAAATTCTACAGGCAATGCA	2
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2.1|812251|29|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	93.10	29	2	0	1	29	165590	165562	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	4e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	165562-165590	TTTCGAAAAGAAATTCTACAGGCAATGCA	2
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2.1|812251|29|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	93.10	29	2	0	1	29	273610	273638	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	4e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	273610-273638	TGCATTGCCTGTAGAATTTCTTTTCGAAA	2
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2.1|812251|29|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	93.10	29	2	0	1	29	817685	817713	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	4e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	817685-817713	TGCATTGTCTGTAGAAATTCTTTTCGAAA	2
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2.1|812251|29|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	93.10	29	2	0	1	29	859715	859743	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	4e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	859715-859743	TGCATTGCCTGTAGAATTTCTTTTCGAAA	2
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2.1|812251|29|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	93.10	29	2	0	1	29	908487	908459	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	4e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	908459-908487	TTTCGAAAAGAAATTCTACAGGCAATGCA	2
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2.1|812251|29|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	93.10	29	2	0	1	29	1171269	1171241	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	4e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	1171241-1171269	TTTCAAAAAGAAATTCTACAGACAATGCA	2
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2.1|812251|29|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	93.10	29	2	0	1	29	1643897	1643925	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	4e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	1643897-1643925	TGCATTGCCTGTAGAATTTCTTTTCGAAA	2
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	3.1|859673|34|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	97.06	34	1	0	1	34	1379459	1379426	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	4e-09	52.3	1.0	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT	1379426-1379459	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	1
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	3.1|859673|34|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	97.06	34	1	0	1	34	1469200	1469233	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	4e-09	52.3	1.0	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT	1469200-1469233	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	6.1|1255011|26|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	100.00	26	0	0	1	26	288868	288893	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	1e-06	42.8	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	288868-288893	CGGGGCCCCAACATAGAAGCTGGCGG	0
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	6.1|1255011|26|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	100.00	26	0	0	1	26	2756262	2756237	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	1e-06	42.8	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	2756237-2756262	CCGCCAGCTTCTATGTTGGGGCCCCG	0
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	6.1|1255011|26|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	96.15	26	1	0	1	26	288924	288949	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	288924-288949	CGGGGCCCCAACACAGAAGCTGGCGG	1
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	6.1|1255011|26|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	96.15	26	1	0	1	26	860032	860007	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	860007-860032	CCGCCAGCTTCTGTGTTGGGGCCCCG	1
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	6.1|1255011|26|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	96.15	26	1	0	1	26	2756318	2756293	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	2756293-2756318	CCGCCAGCTTCTTTGTTGGGGCCCCG	1
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	6.1|1255011|26|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	92.31	26	2	0	1	26	780650	780675	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	780650-780675	CGGGGCCCCAACACAGAAGCAGGCGG	2
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	6.1|1255011|26|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	92.31	26	2	0	1	26	780706	780731	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	780706-780731	CGGGGCCCCAACATAGAAGCAGACGG	2
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	6.1|1255011|26|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	92.31	26	2	0	1	26	780762	780787	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	780762-780787	CGGGGCCCCAACATAAAAGCAGGCGG	2
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	6.1|1255011|26|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	92.31	26	2	0	1	26	824883	824858	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	824858-824883	CCGTCAGCTTCTGTGTTGGGGCCCCG	2
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	12.1|2316706|26|NC_002953|CRISPRCasFinder	NC_002953.3	Staphylococcus aureus subsp. aureus MSSA476, complete genome	92.31	26	2	0	1	26	1171190	1171165	655191-655282|812225-812305|859649-859730|1086739-1086831|1244142-1244234|1254981-1255066|1678189-1678274|1764056-1764142|1936254-1936381|2205169-2205249|2217491-2217577|2316676-2316761|2483626-2483704|2623839-2623946	1e-04	36.5	1.0	TCGTCACCTTCTATGTTGGGGCCCCG	1171165-1171190	CGGGGCCCCAACACAGAAGCTGACGA	2
