The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2799802	749340	757161	2799802		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|749340_750396_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|750395_751082_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|751056_751530_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|751872_752313_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|752592_753177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|753275_753989_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|753992_754412_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|754413_755082_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604515.1|755432_756026_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
WP_001217806.1|756009_757161_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 2
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2799802	769133	783864	2799802		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663032.1|769133_770192_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	1.8e-21
WP_000197271.1|770486_771029_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429008.1|771709_772627_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.8e-07
WP_031760357.1|772716_772818_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|772895_774401_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|774741_775242_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|775261_776128_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|776928_777327_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|777289_779395_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|779512_780484_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|780997_781153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|781191_782163_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245573.1|782149_783106_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|783102_783864_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 3
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2799802	978151	1052031	2799802	protease,portal,tail,plate,holin,bacteriocin,capsid,terminase,head,integrase	Staphylococcus_phage(80.88%)	92	980997:981023	1025751:1025777
WP_001049957.1|978151_979714_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	2.2e-36
WP_000928416.1|980015_980819_+	TerC family protein	NA	S5MAL1	Bacillus_phage	41.0	4.2e-31
980997:981023	attL	ATTAGGTGTTAATGTGTCATAATGATA	NA	NA	NA	NA
WP_000264194.1|981107_982313_-|integrase	site-specific integrase	integrase	B7T0F2	Staphylococcus_virus	100.0	4.2e-221
WP_001166481.1|982439_983063_+	hypothetical protein	NA	B7T0F3	Staphylococcus_virus	99.5	1.3e-104
WP_000449605.1|983261_983657_-	hypothetical protein	NA	I1W601	Staphylococcus_phage	99.2	3.2e-69
WP_000755720.1|983685_984120_-	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	93.1	7.5e-19
WP_000524996.1|984137_984599_-	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.0	4.9e-85
WP_000429766.1|984611_984941_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_001115060.1|985101_985293_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_001001356.1|985376_985553_+	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001548903.1|985549_985789_-	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
WP_001036299.1|985835_986051_+	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001124198.1|986075_986339_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_000072842.1|986350_986512_+	DUF1270 family protein	NA	A0A059T7J6	Staphylococcus_phage	94.3	3.6e-19
WP_001817285.1|986604_986865_+	DUF2482 family protein	NA	A0A0H3U2W4	Staphylococcus_phage	98.8	1.3e-39
WP_000291505.1|986904_987165_+	DUF1108 family protein	NA	A0EWW8	Staphylococcus_phage	94.2	8.4e-42
WP_000279447.1|987178_987541_+	hypothetical protein	NA	A0A0K1LKE9	Staphylococcus_phage	95.8	1.7e-53
WP_000762536.1|987537_988704_+	DUF2800 domain-containing protein	NA	A0A0K1LKE3	Staphylococcus_phage	99.5	4.5e-220
WP_000645049.1|988729_989287_+	DUF2815 family protein	NA	A0A2K9VBT2	Staphylococcus_phage	95.7	1.3e-92
WP_078055713.1|989355_991308_+	DNA polymerase	NA	B7T0G8	Staphylococcus_virus	98.9	0.0e+00
WP_001164629.1|991320_991506_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_000113974.1|991505_991907_+	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_000022732.1|991906_992161_+	DUF3310 domain-containing protein	NA	A0A059T7J9	Staphylococcus_phage	100.0	2.8e-42
WP_078055706.1|992160_992409_+	hypothetical protein	NA	Q8SDR2	Staphylococcus_virus	93.9	1.8e-38
WP_000693989.1|992422_992629_+	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
WP_000695756.1|992631_993036_+	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	100.0	4.2e-72
WP_000979209.1|993032_993380_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000144705.1|993376_993685_+	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	97.1	9.9e-50
WP_001065025.1|993677_993926_+	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	96.3	5.9e-37
WP_000185699.1|993918_994455_+	dUTP diphosphatase	NA	A0A1P8L6E0	Staphylococcus_phage	99.4	1.4e-94
WP_001209217.1|994491_994665_+	hypothetical protein	NA	A0A2I6PEA8	Staphylococcus_phage	100.0	3.6e-25
WP_000195773.1|994681_994876_+	DUF1381 domain-containing protein	NA	A1KX86	Staphylococcus_virus	84.4	7.9e-21
WP_000664554.1|994875_995400_+	hypothetical protein	NA	A0A0K1LKF9	Staphylococcus_phage	88.5	4.7e-84
WP_000595263.1|995447_995600_+	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000265252.1|995667_995868_+	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000884882.1|996155_998603_+	virulence-associated E family protein	NA	A0A2I6PEP4	Staphylococcus_phage	99.0	0.0e+00
WP_015978074.1|998705_998810_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	2.7e-12
WP_000665205.1|998943_999234_+	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
WP_078055707.1|999214_1000591_+	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.3	7.4e-262
WP_000528515.1|1000603_1001041_+	transcriptional regulator	NA	Q4ZCF5	Staphylococcus_virus	99.3	3.6e-77
WP_000166257.1|1001201_1001522_+	HNH endonuclease	NA	A0A2K9VBV6	Staphylococcus_phage	86.8	4.6e-50
WP_000778935.1|1001647_1001953_+|terminase	P27 family phage terminase small subunit	terminase	U5U414	Staphylococcus_phage	100.0	2.9e-49
WP_000152859.1|1001942_1003634_+|terminase	terminase large subunit	terminase	A0A2I6PE99	Staphylococcus_phage	99.6	0.0e+00
WP_001100668.1|1003638_1004877_+|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	99.8	1.2e-234
WP_000061866.1|1004860_1005634_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001142734.1|1005645_1006809_+|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000050973.1|1006877_1007156_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_000395498.1|1007167_1007500_+	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000110023.1|1007496_1007898_+	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_001023806.1|1007898_1008294_+	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000807536.1|1008328_1008970_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_000169127.1|1009061_1009517_+	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000589167.1|1009574_1009925_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|1009966_1010125_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_001003432.1|1010138_1016339_+|tail	phage tail tape measure protein	tail	A0A2K9VBQ5	Staphylococcus_phage	99.7	0.0e+00
WP_001190533.1|1016338_1017163_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000384466.1|1017171_1018755_+|tail	phage tail protein	tail	Q4ZD01	Staphylococcus_virus	98.7	1.3e-305
WP_000179860.1|1018754_1019045_+	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
WP_000429552.1|1019060_1020971_+	hypothetical protein	NA	A0A2K9VBU3	Staphylococcus_phage	100.0	0.0e+00
WP_000067138.1|1020970_1022437_+|plate	phage baseplate upper protein	plate	A0A2I6PDE3	Staphylococcus_phage	98.2	9.3e-271
WP_001166599.1|1022436_1022826_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|1022818_1022983_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466784.1|1023028_1023328_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000339144.1|1023463_1023766_+|holin	phage holin	holin	B7T0L0	Staphylococcus_virus	100.0	4.1e-48
WP_000930266.1|1023776_1025231_+	N-acetylmuramoyl-L-alanine amidase	NA	I1W626	Staphylococcus_phage	98.8	1.2e-286
WP_001793567.1|1025791_1028116_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
1025751:1025777	attR	ATTAGGTGTTAATGTGTCATAATGATA	NA	NA	NA	NA
WP_000021864.1|1028132_1029491_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414172.1|1029629_1031141_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287268.1|1031627_1032197_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1032406_1032625_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|1032705_1033692_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1033890_1034067_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1034081_1034684_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_031893173.1|1035540_1035642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001797239.1|1035651_1035924_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000873930.1|1037933_1038254_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571184.1|1038250_1038892_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
WP_001795266.1|1038979_1039270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410716.1|1039610_1039898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000719185.1|1039903_1041385_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|1041473_1041830_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081343.1|1042317_1043277_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020978112.1|1043322_1043454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000867357.1|1043517_1043733_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_000620957.1|1043897_1044449_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|1044499_1045438_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000190623.1|1045619_1046981_+	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000526696.1|1046967_1048641_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000951692.1|1048627_1049431_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184953.1|1049423_1050245_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284457.1|1050482_1050812_-	staphostatin B	NA	NA	NA	NA	NA
WP_001089097.1|1050849_1052031_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 4
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2799802	1071968	1080441	2799802		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1071968_1072451_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_000009495.1|1072437_1073562_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1073565_1074270_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1074269_1074533_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666801.1|1074534_1075206_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1075198_1077388_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|1077366_1078851_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030823.1|1078843_1079872_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238663.1|1079874_1080441_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	1.0e-28
>prophage 5
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2799802	1615500	1623830	2799802	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1615500_1616286_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924220.1|1616411_1617302_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001062177.1|1617311_1618658_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683932.1|1618771_1619872_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624585.1|1619874_1620552_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1620682_1621789_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217234.1|1622012_1623830_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	35.8	1.8e-53
>prophage 6
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2799802	1693381	1702424	2799802	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1693381_1693900_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594998.1|1693921_1696195_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.1	6.8e-63
WP_000749795.1|1696397_1698677_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1698951_1699212_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1699230_1700370_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1700392_1701418_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1701419_1702424_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 7
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2799802	1826096	1873153	2799802	tRNA,transposase	Staphylococcus_phage(94.44%)	44	NA	NA
WP_001050543.1|1826096_1832657_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	96.8	5.9e-301
WP_000836465.1|1832982_1833294_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001789004.1|1833315_1835739_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.7	0.0e+00
WP_001025071.1|1836026_1837208_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	6.2e-217
WP_000526539.1|1837317_1838271_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1838267_1838831_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1838950_1839352_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1839925_1840753_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1840755_1840875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1840986_1841988_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008549.1|1842109_1842574_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159035.1|1842586_1843768_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
WP_000493886.1|1843778_1844411_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
WP_000077351.1|1844417_1845461_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.7	1.7e-197
WP_001261671.1|1845941_1847444_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.5e-29
WP_000221179.1|1847966_1848281_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989115.1|1848280_1849573_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	3.2e-227
WP_001032833.1|1849659_1850514_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1850789_1851014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1851212_1851683_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1851795_1852239_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1852225_1852669_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001096494.1|1854038_1854752_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1855011_1855314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1855569_1855935_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623476.1|1855931_1856285_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	98.3	2.0e-22
WP_000453314.1|1856667_1857501_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	100.0	5.4e-159
WP_000366158.1|1857712_1858621_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.0	1.7e-137
WP_000933822.1|1858745_1859939_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109910.1|1860310_1861903_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_016169057.1|1862280_1863027_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.2	2.2e-143
WP_000672013.1|1863031_1863505_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1863570_1863828_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778532.1|1863824_1864826_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	2.8e-186
WP_000348356.1|1864830_1866309_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.6e-281
WP_072419835.1|1866467_1866923_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.3	5.7e-78
WP_001793444.1|1867225_1867876_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	99.1	3.0e-56
WP_000070649.1|1867956_1868952_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	4.2e-73
WP_000669017.1|1869025_1869652_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	94.7	3.6e-91
WP_000627541.1|1869692_1870034_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	8.1e-53
WP_000414202.1|1870134_1870707_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	89.7	3.3e-22
WP_000375477.1|1871835_1872012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070814.1|1872022_1872406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1873009_1873153_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
>prophage 8
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2799802	1879881	1901886	2799802	protease	Staphylococcus_phage(94.74%)	21	NA	NA
WP_000072623.1|1879881_1881081_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	1.6e-228
WP_000028669.1|1881073_1882630_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
WP_001791797.1|1882793_1882928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038709.1|1882992_1883712_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.2	9.2e-131
WP_001038859.1|1883832_1884552_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.6	3.2e-131
WP_001039444.1|1884609_1885332_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	100.0	6.4e-132
WP_001005059.1|1885456_1886164_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	99.6	7.7e-130
WP_001092767.1|1887127_1887694_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	99.5	4.3e-99
WP_000586140.1|1888167_1888866_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1888862_1889624_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1889620_1890313_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1890335_1891709_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1891718_1892237_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1892252_1893497_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001092607.1|1893489_1896483_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.0	0.0e+00
WP_000416756.1|1896547_1896691_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|1897427_1897571_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|1897812_1898796_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000473596.1|1898797_1899733_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_001086056.1|1900629_1901085_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.2	6.3e-61
WP_000206350.1|1901097_1901886_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
>prophage 9
NC_002953	Staphylococcus aureus subsp. aureus MSSA476, complete genome	2799802	1995885	2083069	2799802	protease,portal,tail,holin,capsid,terminase,head,integrase	Staphylococcus_phage(91.18%)	101	2032642:2032659	2079098:2079115
WP_000827761.1|1995885_1997052_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434534.1|1997082_1997409_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669861.1|1997700_1997874_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1997854_1998457_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|1998727_1999549_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284431.1|1999541_2001011_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000897635.1|2001194_2002271_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177816.1|2002290_2003085_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2003156_2003264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323164.1|2003274_2004837_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275710.1|2005041_2006139_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.3	1.6e-46
WP_000149686.1|2006510_2007071_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2007123_2008053_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2008247_2008421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021214.1|2008472_2009852_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181316.1|2009971_2011000_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2011269_2011671_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2012243_2012417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188043.1|2012867_2013908_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2013964_2014807_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2014803_2015361_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966287.1|2015420_2015945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000182842.1|2016065_2016629_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221657.1|2016694_2017435_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2017434_2018307_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645726.1|2018303_2018984_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991301.1|2018984_2019881_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2019877_2020258_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2020516_2020693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2020935_2021034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068523.1|2021233_2022520_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001792928.1|2023144_2024893_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669791.1|2025850_2026030_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
WP_001791826.1|2026340_2026601_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2026653_2027004_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000920038.1|2028501_2028993_-	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_000861025.1|2029183_2029939_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	99.6	7.6e-152
WP_000611512.1|2029950_2030205_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_031762631.1|2030256_2030364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2030416_2030593_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000750412.1|2030701_2031475_-	staphylococcal enterotoxin type A	NA	A0A1X9H080	Staphylococcus_phage	100.0	1.1e-145
WP_000340977.1|2031847_2032222_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262621.1|2032277_2032565_-	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_001000058.1|2032610_2032763_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
2032642:2032659	attL	TTTTGTTCTTGTATATAT	NA	NA	NA	NA
WP_000582130.1|2032755_2036538_-	hypothetical protein	NA	A0A1X9H096	Staphylococcus_phage	99.4	0.0e+00
WP_001154317.1|2036553_2038044_-|tail	phage tail family protein	tail	R9QST9	Staphylococcus_phage	100.0	3.1e-298
WP_001133533.1|2038043_2042693_-|tail	phage tail tape measure protein	tail	A0A1V0E5H1	Staphylococcus_phage	94.7	0.0e+00
WP_000570353.1|2042748_2042871_-	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
WP_000442601.1|2042930_2043377_-	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
WP_000570652.1|2043441_2044395_-	Ig-like domain-containing protein	NA	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
WP_000611454.1|2044395_2044776_-	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	99.2	2.2e-67
WP_000501244.1|2044772_2045150_-	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
WP_000975314.1|2045149_2045485_-|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_001177483.1|2045471_2045804_-|head,tail	phage head-tail connector protein	head,tail	D2JLF0	Staphylococcus_phage	100.0	2.1e-58
WP_001252099.1|2045812_2045971_-	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_000849950.1|2046006_2047254_-|capsid	phage major capsid protein	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
WP_000032525.1|2047341_2047926_-|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
WP_000511067.1|2047918_2049169_-|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	100.0	4.4e-237
WP_000365299.1|2049174_2049375_-	hypothetical protein	NA	A0A1P8L6D3	Staphylococcus_phage	100.0	5.8e-27
WP_000133304.1|2049388_2051083_-|terminase	phage terminase large subunit	terminase	D2JLE4	Staphylococcus_phage	100.0	0.0e+00
WP_000919026.1|2051085_2051553_-|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
WP_000817289.1|2051681_2052026_-	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
WP_000406191.1|2052041_2052494_-	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	100.0	1.4e-79
WP_000282755.1|2052608_2053079_-	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	99.3	1.7e-69
WP_001570807.1|2053101_2053302_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
WP_001005262.1|2053301_2053952_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
WP_000595265.1|2054110_2054260_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000401978.1|2054600_2055005_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	91.0	6.9e-67
WP_000338527.1|2055013_2055232_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	98.6	4.0e-37
WP_000148328.1|2055238_2056132_-	DnaD domain-containing protein	NA	A0A0E3TAG7	Staphylococcus_phage	97.6	1.6e-137
WP_000934765.1|2056161_2056632_-	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	96.2	7.7e-78
WP_072353921.1|2056632_2057250_-	MBL fold metallo-hydrolase	NA	A0A1W6JPL3	Staphylococcus_phage	98.1	1.3e-85
WP_000138475.1|2057330_2058251_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_047211354.1|2058252_2060208_-	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	98.6	0.0e+00
WP_001205732.1|2060204_2060468_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291488.1|2060476_2060737_-	DUF1108 family protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
WP_000066020.1|2060829_2060991_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_001120197.1|2060987_2061308_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000275058.1|2061366_2061999_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_000939496.1|2062013_2062154_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_001148861.1|2062184_2062382_-	hypothetical protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
WP_000351243.1|2063199_2063739_+	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
WP_000435341.1|2063762_2064023_-	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000338186.1|2064040_2064265_-	DUF739 family protein	NA	A7TW90	Staphylococcus_phage	100.0	4.5e-36
WP_001208482.1|2064423_2065194_+	helix-turn-helix domain-containing protein	NA	A0A1P8L6G7	Staphylococcus_phage	100.0	6.2e-141
WP_001033320.1|2065389_2066118_+	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	34.9	2.3e-28
WP_000733771.1|2066141_2066870_+	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	32.3	6.4e-23
WP_000857182.1|2066953_2067991_+|integrase	site-specific integrase	integrase	E9LT82	Staphylococcus_phage	100.0	2.6e-195
WP_000595401.1|2069109_2070126_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	2.3e-26
WP_000791417.1|2070147_2071200_-	bi-component leukocidin LukGH subunit H	NA	A0A2I6PDF3	Staphylococcus_phage	32.1	1.6e-35
WP_000206623.1|2071635_2072859_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000812008.1|2073230_2074076_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|2074137_2075049_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045079.1|2075209_2076517_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000022887.1|2077370_2077814_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_072419900.1|2077919_2078357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293059.1|2078673_2079264_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	94.7	1.2e-96
2079098:2079115	attR	TTTTGTTCTTGTATATAT	NA	NA	NA	NA
WP_000128898.1|2079260_2079473_-	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
WP_000240642.1|2080174_2081791_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2081866_2082151_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|2082325_2083069_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
