The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_006449	Streptococcus thermophilus CNRZ1066, complete sequence	1796226	343767	351486	1796226	transposase	Streptococcus_phage(50.0%)	8	NA	NA
WP_002947187.1|343767_344532_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.2	5.2e-15
WP_002947183.1|344531_345242_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.7	2.2e-15
WP_002947179.1|346204_347131_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	79.2	3.7e-140
WP_002949745.1|347232_347859_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	60.4	6.7e-69
WP_011226886.1|347913_349233_+	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	52.8	7.6e-123
WP_002949747.1|349213_349876_+	ComF family protein	NA	NA	NA	NA	NA
WP_011225518.1|349954_350503_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_041826943.1|350532_351486_-|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.2	1.3e-36
>prophage 2
NC_006449	Streptococcus thermophilus CNRZ1066, complete sequence	1796226	592000	601947	1796226		Streptococcus_phage(85.71%)	9	NA	NA
WP_004197422.1|592000_593002_+	catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	27.3	3.7e-21
WP_011225705.1|593060_593258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011225706.1|593363_594128_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
WP_011227015.1|594142_595258_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	99.3	4.4e-156
WP_002950250.1|595296_595752_-	YueI family protein	NA	W6LLD2	Streptococcus_phage	98.7	1.3e-77
WP_011225708.1|595960_597265_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	99.5	3.2e-246
WP_002947233.1|597762_599949_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	99.2	0.0e+00
WP_011227016.1|600109_601273_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	99.2	5.0e-219
WP_011225709.1|601269_601947_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	99.6	5.6e-122
>prophage 3
NC_006449	Streptococcus thermophilus CNRZ1066, complete sequence	1796226	710429	719354	1796226		Bacillus_phage(50.0%)	8	NA	NA
WP_011227084.1|710429_711035_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	32.7	1.0e-18
WP_011227085.1|711129_712380_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.1	2.0e-96
WP_011225791.1|712386_713364_+	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_041827001.1|713365_713977_+	lysozyme family protein	NA	A0A223LKM8	Bacillus_phage	41.6	3.5e-22
WP_011225793.1|714009_715749_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.2	2.6e-46
WP_041827002.1|715738_717487_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.7	2.7e-51
WP_002885174.1|717663_717795_+	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
WP_011225796.1|717803_719354_+	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9KZV5	Tupanvirus	29.5	9.2e-43
>prophage 4
NC_006449	Streptococcus thermophilus CNRZ1066, complete sequence	1796226	723716	736436	1796226	integrase	Streptococcus_phage(62.5%)	14	728379:728396	736536:736553
WP_011227091.1|723716_726353_-	calcium-translocating P-type ATPase, PMCA-type	NA	M1HK51	Paramecium_bursaria_Chlorella_virus	29.2	3.7e-84
WP_011227092.1|726529_728248_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	36.2	2.7e-27
728379:728396	attL	GATTTTAGAGGGAAATAT	NA	NA	NA	NA
WP_011227094.1|729305_729581_-	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	44.0	2.3e-13
WP_011227095.1|729597_729783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011227096.1|730083_731586_-	DNA primase family protein	NA	Q9AZI5	Lactococcus_phage	35.7	2.2e-62
WP_011227097.1|731575_732436_-	primase alpha helix C-terminal domain-containing protein	NA	A0A1X9I6L2	Streptococcus_phage	62.9	1.3e-102
WP_011227098.1|732450_732723_-	MerR family transcriptional regulator	NA	A0A1X9I5U9	Streptococcus_phage	50.6	1.4e-18
WP_014608197.1|732724_733036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011227100.1|733052_733289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014608198.1|733302_733497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148148892.1|733500_733806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041827005.1|734015_734213_-	helix-turn-helix transcriptional regulator	NA	A0A1X9I5U5	Streptococcus_phage	60.0	7.3e-14
WP_065429493.1|734341_735190_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011227104.1|735269_736436_+|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	69.3	1.9e-154
736536:736553	attR	GATTTTAGAGGGAAATAT	NA	NA	NA	NA
>prophage 5
NC_006449	Streptococcus thermophilus CNRZ1066, complete sequence	1796226	768075	781023	1796226	transposase	Streptococcus_phage(27.27%)	16	NA	NA
WP_002946194.1|768075_768729_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	55.4	2.8e-62
WP_002950528.1|768728_769172_+	6-carboxytetrahydropterin synthase QueD	NA	J9PV91	Bacillus_phage	55.6	7.9e-40
WP_011225834.1|769164_769881_+	7-carboxy-7-deazaguanine synthase QueE	NA	E7DN68	Pneumococcus_phage	48.1	1.8e-62
WP_002946191.1|770000_770492_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	56.7	1.4e-45
WP_011225836.1|771311_771500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011227118.1|771704_772475_+	DUF1003 domain-containing protein	NA	NA	NA	NA	NA
WP_011227119.1|772455_773346_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	28.9	3.3e-05
WP_011227120.1|773342_774317_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	73.5	8.9e-137
WP_002945081.1|774313_775225_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	64.7	7.1e-104
WP_011227121.1|775242_775464_+	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_101361296.1|775423_775993_+	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_011225841.1|775999_776236_+	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_041827011.1|776535_776745_+	cold shock domain-containing protein	NA	A0A1X9IGI9	Lactococcus_phage	53.1	1.5e-12
WP_011681063.1|777015_777216_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	89.4	2.9e-26
WP_041827012.1|777546_778722_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	27.8	1.4e-35
WP_041827013.1|778842_781023_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	32.7	2.4e-65
>prophage 6
NC_006449	Streptococcus thermophilus CNRZ1066, complete sequence	1796226	1436916	1497609	1796226	protease,transposase,tRNA,integrase,bacteriocin	Bacillus_virus(25.0%)	56	1433335:1433350	1487426:1487441
1433335:1433350	attL	ATAAAGTGGTCATTAA	NA	NA	NA	NA
WP_011227488.1|1436916_1439016_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.5	4.2e-123
WP_011227489.1|1439730_1440822_-	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_179970537.1|1440828_1441575_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_011227491.1|1441893_1442247_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_002951696.1|1442270_1442861_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	NA	NA	NA	NA	NA
WP_011226445.1|1442857_1443490_-	nicotinate-nucleotide adenylyltransferase	NA	G3MA22	Bacillus_virus	31.4	3.2e-18
WP_002951701.1|1443593_1443911_-	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA	NA
WP_002951703.1|1444149_1445268_-	ribosome biogenesis GTPase YqeH	NA	NA	NA	NA	NA
WP_002951705.1|1445267_1445795_-	YqeG family HAD IIIA-type phosphatase	NA	NA	NA	NA	NA
WP_011226447.1|1445931_1446846_-	EamA family transporter	NA	NA	NA	NA	NA
WP_011226448.1|1446922_1447306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002946582.1|1447403_1448846_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_002946584.1|1448845_1450312_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_002884769.1|1450311_1450614_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_011226449.1|1450753_1451008_-	glycosyl transferase	NA	NA	NA	NA	NA
WP_011226450.1|1451020_1451230_-	glycosyl transferase	NA	NA	NA	NA	NA
WP_041827089.1|1453139_1453649_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_041827090.1|1453660_1454509_-	O-sialoglycoprotein endopeptidase	NA	NA	NA	NA	NA
WP_002946999.1|1454631_1455183_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	40.3	2.6e-24
WP_002951720.1|1455245_1456031_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_011226456.1|1456290_1457505_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_002946987.1|1457859_1458312_+	universal stress protein	NA	NA	NA	NA	NA
WP_002946980.1|1459954_1460755_-	pyruvate formate lyase-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	31.8	2.9e-24
WP_157821721.1|1460942_1461071_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002951727.1|1461750_1463082_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_011226459.1|1463194_1463977_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	5.9e-14
WP_011227498.1|1464595_1466662_-	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_011227499.1|1466670_1466913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004197152.1|1466909_1467458_-	SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	43.5	4.5e-37
WP_011226463.1|1467454_1468399_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	48.3	8.6e-36
WP_011226464.1|1468483_1469560_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
WP_011226465.1|1469537_1470035_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	28.8	8.3e-14
WP_011227500.1|1470068_1470668_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_011226467.1|1470758_1471679_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	52.0	4.7e-87
WP_011227501.1|1471744_1471969_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_011226469.1|1472183_1472927_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.0	1.5e-30
WP_095559509.1|1472926_1473673_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_041827091.1|1474061_1474889_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002947030.1|1475469_1475703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011227504.1|1475988_1477092_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_011226473.1|1477369_1479679_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	32.4	8.1e-112
WP_011227507.1|1481565_1481889_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_082302977.1|1482901_1483396_-|integrase	tyrosine-type recombinase/integrase	integrase	D2XR58	Bacillus_phage	36.4	1.4e-16
WP_011227510.1|1483583_1484270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002951770.1|1484345_1485101_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_011227511.1|1485097_1485748_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	31.5	2.4e-21
WP_041827093.1|1485949_1486906_-	serine hydrolase	NA	NA	NA	NA	NA
WP_011681560.1|1486905_1487661_-	CppA family protein	NA	NA	NA	NA	NA
1487426:1487441	attR	TTAATGACCACTTTAT	NA	NA	NA	NA
WP_041826943.1|1488013_1488967_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.2	1.3e-36
WP_011227514.1|1489076_1489463_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002951781.1|1489636_1490500_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	34.4	3.9e-27
WP_011227515.1|1490620_1492888_+	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA	NA
WP_011227518.1|1494866_1495109_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002948869.1|1495358_1496090_+	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	20.9	5.9e-08
WP_002948870.1|1496089_1497430_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_011226496.1|1497447_1497609_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 7
NC_006449	Streptococcus thermophilus CNRZ1066, complete sequence	1796226	1773947	1789520	1796226	tRNA	Streptococcus_phage(30.0%)	15	NA	NA
WP_011226700.1|1773947_1774577_-	hypothetical protein	NA	Q4Z8Z7	Staphylococcus_phage	46.2	4.7e-22
WP_011226701.1|1774817_1775372_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0E3XCL7	Enterococcus_phage	42.2	3.1e-25
WP_011226702.1|1775675_1776470_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_002947774.1|1776462_1777305_-	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.2	2.1e-17
WP_002947776.1|1777280_1778111_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	31.3	4.5e-20
WP_011227624.1|1778123_1778666_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_011226703.1|1778678_1779536_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011227625.1|1779594_1780872_-	insulinase family protein	NA	A0A167R9K4	Powai_lake_megavirus	28.3	9.6e-22
WP_011227626.1|1780873_1782124_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	39.6	1.1e-91
WP_002947785.1|1782201_1782579_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	68.4	1.7e-22
WP_002947786.1|1782581_1783682_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_011227627.1|1783850_1785332_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.3	6.8e-96
WP_002952292.1|1785508_1786531_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_011227628.1|1786958_1787831_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	33.9	3.7e-33
WP_011226709.1|1787897_1789520_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	25.3	5.4e-46
