assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000011885.1_ASM1188v1	NC_006511	Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, complete sequence	1	2515496-2515590	1	CRISPRCasFinder	no		c2c9_V-U4,cas3,DEDDh,DinG,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK	Orphan	TGGACAATCGTTGGACACCCGTTGGACAA	29	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DEDDh,DinG,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK	NA|99aa|up_4|NC_006511.1_2512579_2512876_-,NA|52aa|up_2|NC_006511.1_2513210_2513366_-,NA|69aa|up_1|NC_006511.1_2513377_2513584_-,NA|82aa|down_4|NC_006511.1_2517923_2518169_+,NA|101aa|down_6|NC_006511.1_2518780_2519083_+,NA|98aa|down_9|NC_006511.1_2520127_2520421_+	NA|59aa|up_9|NC_006511.1_2511350_2511527_-	pfam05810, NinF, NinF protein	NA|114aa|up_8|NC_006511.1_2511519_2511861_-	PHA01519, PHA01519, hypothetical protein	NA|59aa|up_7|NC_006511.1_2511863_2512040_-	pfam05322, NinE, NINE Protein	NA|58aa|up_6|NC_006511.1_2512006_2512180_-	pfam17466, NinD, Family of unknown function	NA|149aa|up_5|NC_006511.1_2512176_2512623_-	pfam05772, NinB, NinB protein	NA|99aa|up_4|NC_006511.1_2512579_2512876_-	NA	NA|107aa|up_3|NC_006511.1_2512878_2513199_-	PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed	NA|52aa|up_2|NC_006511.1_2513210_2513366_-	NA	NA|69aa|up_1|NC_006511.1_2513377_2513584_-	NA	NA|479aa|up_0|NC_006511.1_2513659_2515096_-	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|49aa|down_0|NC_006511.1_2515977_2516124_-	pfam10872, DUF2740, Protein of unknown function (DUF2740)	NA|94aa|down_1|NC_006511.1_2516158_2516440_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|72aa|down_2|NC_006511.1_2516550_2516766_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|230aa|down_3|NC_006511.1_2516876_2517566_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|82aa|down_4|NC_006511.1_2517923_2518169_+	NA	NA|70aa|down_5|NC_006511.1_2518207_2518417_-	PRK10292, PRK10292, fumarate hydratase FumD	NA|101aa|down_6|NC_006511.1_2518780_2519083_+	NA	NA|196aa|down_7|NC_006511.1_2519095_2519683_-	pfam14163, SieB, Super-infection exclusion protein B	NA|65aa|down_8|NC_006511.1_2519896_2520091_+	pfam11058, Ral, Antirestriction protein Ral	NA|98aa|down_9|NC_006511.1_2520127_2520421_+	NA
GCF_000011885.1_ASM1188v1	NC_006511	Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, complete sequence	2	2889569-2889902	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas3	c2c9_V-U4,cas3,DEDDh,DinG,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	TypeI-E	c2c9_V-U4,cas3,DEDDh,DinG,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK	NA,NA	NA|209aa|up_9|NC_006511.1_2880815_2881442_-	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA|254aa|up_8|NC_006511.1_2881435_2882197_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_7|NC_006511.1_2882177_2883227_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_6|NC_006511.1_2883223_2883703_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_5|NC_006511.1_2883702_2884413_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_4|NC_006511.1_2884431_2884743_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_3|NC_006511.1_2884933_2885257_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_2|NC_006511.1_2885307_2885913_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_1|NC_006511.1_2885899_2887339_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_0|NC_006511.1_2887348_2888257_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	cas2|98aa|down_0|NC_006511.1_2889986_2890280_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|297aa|down_1|NC_006511.1_2890309_2891200_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|235aa|down_2|NC_006511.1_2891199_2891904_-	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|242aa|down_3|NC_006511.1_2891903_2892629_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NC_006511.1_2892638_2893697_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|down_5|NC_006511.1_2893719_2894322_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas3|900aa|down_6|NC_006511.1_2896231_2898931_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|318aa|down_7|NC_006511.1_2899310_2900264_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_8|NC_006511.1_2900351_2901086_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NC_006511.1_2901161_2902874_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_000011885.1_ASM1188v1	NC_006511	Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, complete sequence	3	2906453-2906664	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas3	c2c9_V-U4,cas3,DEDDh,DinG,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	3,3,2	3	TypeI-E	c2c9_V-U4,cas3,DEDDh,DinG,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK	NA,NA	cas6e|235aa|up_9|NC_006511.1_2891199_2891904_-	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|242aa|up_8|NC_006511.1_2891903_2892629_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|up_7|NC_006511.1_2892638_2893697_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|up_6|NC_006511.1_2893719_2894322_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas3|900aa|up_5|NC_006511.1_2896231_2898931_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|318aa|up_4|NC_006511.1_2899310_2900264_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_3|NC_006511.1_2900351_2901086_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_2|NC_006511.1_2901161_2902874_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_1|NC_006511.1_2902873_2904673_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_0|NC_006511.1_2905108_2905471_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|224aa|down_0|NC_006511.1_2906960_2907632_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NC_006511.1_2907767_2909066_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NC_006511.1_2909148_2910786_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NC_006511.1_2911013_2911814_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|196aa|down_4|NC_006511.1_2912422_2913010_+	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|900aa|down_5|NC_006511.1_2913089_2915789_+	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|258aa|down_6|NC_006511.1_2915801_2916575_+	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|169aa|down_7|NC_006511.1_2916594_2917101_+	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|157aa|down_8|NC_006511.1_2917115_2917586_+	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|179aa|down_9|NC_006511.1_2917582_2918119_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional
