The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_002951	Staphylococcus aureus subsp. aureus COL, complete sequence	2809422	354784	397516	2809422	terminase,plate,integrase,portal,protease,head,capsid,holin,tail	Staphylococcus_phage(87.14%)	70	354674:354691	398250:398267
354674:354691	attL	ATCATACAAGGATGGGAT	NA	NA	NA	NA
WP_000264187.1|354784_355990_-|integrase	site-specific integrase	integrase	A0A1X9H094	Staphylococcus_phage	100.0	5.0e-222
WP_001582614.1|356183_356897_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1X9H026	Staphylococcus_phage	99.6	2.5e-128
WP_000705240.1|356974_357157_-	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_000358220.1|357356_358076_-	helix-turn-helix transcriptional regulator	NA	Q8SDX2	Staphylococcus_phage	100.0	9.8e-133
WP_001198674.1|358217_358436_+	helix-turn-helix transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	98.6	8.3e-35
WP_001153965.1|358450_358759_+	hypothetical protein	NA	S4V9P0	Staphylococcus_phage	100.0	1.3e-49
WP_001148570.1|358915_359707_+	phage antirepressor KilAC domain-containing protein	NA	A0A0E3T9K2	Staphylococcus_phage	99.6	4.2e-145
WP_000187184.1|359707_359932_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_001025401.1|359971_360217_+	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_001128433.1|360185_360551_-	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_031903992.1|360607_360805_+	hypothetical protein	NA	A7TWF5	Staphylococcus_phage	95.4	8.6e-23
WP_000773060.1|360791_361172_-	DUF2513 domain-containing protein	NA	Q4ZCQ5	Staphylococcus_virus	99.2	3.8e-67
WP_000389907.1|361219_361411_+	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	98.4	1.1e-25
WP_000801109.1|361388_361640_-	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.9e-38
WP_001124196.1|361694_361958_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	98.9	7.4e-46
WP_001285962.1|361970_362132_+	DUF1270 domain-containing protein	NA	A9CR58	Staphylococcus_phage	100.0	8.6e-21
WP_001097093.1|362221_362539_+	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	95.8	3.6e-31
WP_001556704.1|362543_362804_+	DUF1108 family protein	NA	G4KNN5	Staphylococcus_phage	100.0	2.0e-43
WP_000815401.1|362813_363035_+	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_000139722.1|363027_363651_+	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	99.0	5.7e-113
WP_000934777.1|363650_364070_+	single-stranded DNA-binding protein	NA	Q4ZA54	Staphylococcus_virus	99.3	5.3e-62
WP_001124444.1|364083_364779_+	hypothetical protein	NA	A0A0E3XBQ6	Staphylococcus_phage	98.7	9.5e-133
WP_000504976.1|364750_365551_+	phage replisome organizer N-terminal domain-containing protein	NA	Q8SDW2	Staphylococcus_phage	98.5	8.7e-106
WP_001132238.1|365550_365907_+	hypothetical protein	NA	M9NS37	Staphylococcus_phage	98.3	6.9e-63
WP_001106168.1|365903_367145_+	AAA family ATPase	NA	C8CGZ3	Staphylococcus_phage	100.0	2.6e-229
WP_001095146.1|367141_367357_+	hypothetical protein	NA	B7T0B0	Staphylococcus_virus	95.8	1.2e-33
WP_001123688.1|367359_367581_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_000451862.1|367590_368016_+	DNA N-6-adenine-methyltransferase	NA	Q4ZAC6	Staphylococcus_virus	100.0	8.0e-82
WP_000049810.1|368012_368417_+	DUF1064 domain-containing protein	NA	A0A0H4ISQ5	Staphylococcus_phage	100.0	9.0e-67
WP_001187232.1|368421_368607_+	DUF3113 family protein	NA	A0A0H4IPE3	Staphylococcus_phage	96.7	1.2e-26
WP_000772916.1|368607_368865_+	helix-turn-helix transcriptional regulator	NA	Q4ZBU1	Staphylococcus_virus	100.0	4.1e-41
WP_000029384.1|368876_369233_+	hypothetical protein	NA	A0A0F6N3E3	Staphylococcus_phage	97.5	2.1e-59
WP_000132205.1|369236_369479_+	hypothetical protein	NA	A0A0N7E0T2	Staphylococcus_phage	100.0	2.5e-40
WP_000693987.1|369492_369699_+	hypothetical protein	NA	A0A0N9BAW9	Staphylococcus_phage	100.0	3.0e-34
WP_000695759.1|369701_370103_+	hypothetical protein	NA	A0A0N7E0T5	Staphylococcus_phage	100.0	7.0e-72
WP_000979209.1|370099_370447_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000144708.1|370443_370752_+	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	100.0	8.1e-52
WP_001065023.1|370744_370981_+	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
WP_000185654.1|370985_371528_+	dUTP pyrophosphatase	NA	Q4ZD81	Staphylococcus_virus	100.0	1.5e-96
WP_000195770.1|371564_371771_+	DUF1381 domain-containing protein	NA	B7T0C2	Staphylococcus_virus	95.6	6.0e-19
WP_000141183.1|371767_371962_+	hypothetical protein	NA	A0A0N7E0T8	Staphylococcus_phage	98.4	1.0e-28
WP_001072795.1|371958_372162_+	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
WP_000166078.1|372154_372307_+	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	98.0	4.4e-19
WP_000265258.1|372374_372575_+	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_000513702.1|372894_373332_+	transcriptional regulator	NA	B7T0I6	Staphylococcus_virus	100.0	6.1e-77
WP_000160689.1|373488_373803_+	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	100.0	2.5e-56
WP_000778932.1|373931_374237_+|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
WP_000153555.1|374226_375918_+|terminase	terminase large subunit	terminase	A0A2I6PE44	Staphylococcus_phage	100.0	0.0e+00
WP_001100669.1|375922_377161_+|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
WP_000061866.1|377144_377918_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001142734.1|377929_379093_+|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000050973.1|379161_379440_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_000395498.1|379451_379784_+	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000110023.1|379780_380182_+	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_001023806.1|380182_380578_+	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000807536.1|380612_381254_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_000169127.1|381345_381801_+	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000589167.1|381858_382209_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|382250_382409_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_001003428.1|382422_388623_+|tail	phage tail tape measure protein	tail	Q4ZCL0	Staphylococcus_virus	99.6	0.0e+00
WP_001190533.1|388622_389447_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000384474.1|389455_391039_+|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_000179858.1|391038_391329_+	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000429557.1|391344_393255_+	hypothetical protein	NA	A0A2I6PEQ9	Staphylococcus_phage	99.8	0.0e+00
WP_000067122.1|393254_394721_+|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	99.4	2.9e-272
WP_001166599.1|394720_395110_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_001125229.1|395102_395267_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	98.1	2.5e-23
WP_000466784.1|395312_395612_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000339146.1|395747_396050_+|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000930258.1|396061_397516_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N6WMR3	Staphylococcus_phage	100.0	3.0e-290
398250:398267	attR	ATCATACAAGGATGGGAT	NA	NA	NA	NA
>prophage 2
NC_002951	Staphylococcus aureus subsp. aureus COL, complete sequence	2809422	787730	795550	2809422		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|787730_788786_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|788785_789472_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|789446_789920_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|790261_790702_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|790981_791566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|791664_792378_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|792381_792801_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|792802_793471_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|793821_794415_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|794398_795550_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 3
NC_002951	Staphylococcus aureus subsp. aureus COL, complete sequence	2809422	807522	822309	2809422		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|807522_808581_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|808931_809474_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|810153_811071_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|811161_811263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|811340_812846_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|813186_813687_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|813706_814573_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|815373_815772_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|815734_817840_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|817957_818929_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|819442_819598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|819636_820608_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|820594_821551_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|821547_822309_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 4
NC_002951	Staphylococcus aureus subsp. aureus COL, complete sequence	2809422	900795	922004	2809422	coat,terminase,integrase	Staphylococcus_phage(77.78%)	33	903332:903348	919267:919283
WP_000571218.1|900795_901821_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
WP_000520233.1|901813_902509_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732326.1|902526_903348_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
903332:903348	attL	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_000266157.1|903490_904711_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	6.4e-100
WP_000733775.1|904799_905528_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	32.3	1.9e-22
WP_001033316.1|905551_906280_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	35.4	2.3e-28
WP_001228759.1|906349_906781_-	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	5.1e-36
WP_000281657.1|906797_907256_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
WP_001260004.1|907267_907600_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243851.1|907792_908056_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	3.1e-36
WP_000091731.1|908048_908321_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	90.0	9.7e-41
WP_000784875.1|908332_908479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058486.1|908471_908681_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_001103942.1|908683_909004_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
WP_001002732.1|909067_909937_+	primase alpha helix C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	3.4e-156
WP_000390455.1|909953_911411_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	96.1	1.0e-277
WP_001039168.1|911711_912074_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	99.2	8.9e-66
WP_000998181.1|912075_912360_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	95.7	1.9e-47
WP_001019764.1|912356_912998_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	91.5	1.5e-108
WP_001190615.1|913514_913856_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_000846285.1|913867_914446_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_000448101.1|914463_914682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771368.1|914732_915260_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_000358777.1|915262_915604_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	98.2	1.4e-57
WP_001293067.1|915600_916170_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.0e-100
WP_000278085.1|916477_917278_+	staphylococcal enterotoxin type B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	49.4	1.0e-53
WP_001035631.1|917355_917913_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	73.8	1.4e-70
WP_001795626.1|918285_918438_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	98.0	7.6e-19
WP_000139424.1|918508_918619_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	94.4	2.4e-11
WP_001286805.1|918620_918806_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
WP_000752917.1|919636_919831_+	CsbD family protein	NA	NA	NA	NA	NA
919267:919283	attR	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_001183858.1|920063_920915_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|921242_922004_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 5
NC_002951	Staphylococcus aureus subsp. aureus COL, complete sequence	2809422	1009157	1062934	2809422	bacteriocin,protease,tRNA	Streptococcus_phage(33.33%)	52	NA	NA
WP_000448934.1|1009157_1010147_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|1010441_1010837_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217722.1|1011207_1011927_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959287.1|1012047_1013034_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082731.1|1013081_1014890_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	9.3e-47
WP_000896699.1|1015349_1016156_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214065.1|1016178_1016544_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224622.1|1016647_1017241_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|1017426_1017774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|1017790_1018426_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|1018442_1019252_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669939.1|1019248_1020103_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062417.1|1020123_1021509_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000933195.1|1023640_1024411_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|1024605_1025691_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570699.1|1026032_1027601_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_001288681.1|1027742_1028501_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600392.1|1028694_1029204_+	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001154222.1|1029316_1030507_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|1030484_1031660_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340118.1|1032092_1033574_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|1033557_1033818_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049959.1|1033817_1035380_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	4.9e-36
WP_000928413.1|1035681_1036485_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_000455278.1|1036703_1039028_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021864.1|1039044_1040403_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414177.1|1040541_1042053_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1042539_1043109_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1043318_1043537_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|1043617_1044604_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1044802_1044979_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033871.1|1044993_1045596_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001790623.1|1046513_1046615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078061421.1|1046624_1046897_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870806.1|1046940_1048905_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668623.1|1048907_1049228_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571178.1|1049224_1049866_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
WP_001795544.1|1049953_1050244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410720.1|1050522_1050810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000719184.1|1050815_1052297_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|1052385_1052742_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081351.1|1053218_1054178_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001790177.1|1054223_1054355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000867357.1|1054418_1054634_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_000620953.1|1054798_1055350_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|1055401_1056340_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000190623.1|1056521_1057883_+	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000526687.1|1057869_1059543_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150195.1|1059529_1060333_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184947.1|1060325_1061147_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284457.1|1061385_1061715_-	staphostatin B	NA	NA	NA	NA	NA
WP_001088780.1|1061752_1062934_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 6
NC_002951	Staphylococcus aureus subsp. aureus COL, complete sequence	2809422	1082921	1091394	2809422		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1082921_1083404_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1083390_1084515_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1084518_1085223_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1085222_1085486_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1085487_1086159_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1086151_1088341_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|1088319_1089804_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|1089796_1090825_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1090827_1091394_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 7
NC_002951	Staphylococcus aureus subsp. aureus COL, complete sequence	2809422	1643276	1651588	2809422	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1643276_1644062_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1644187_1645078_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1645087_1646434_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1646547_1647648_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624561.1|1647650_1648328_-|tRNA	tRNA (adenine(22)-N(1))-methyltransferase TrmK	tRNA	NA	NA	NA	NA
WP_001283055.1|1648458_1649565_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1649788_1651588_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 8
NC_002951	Staphylococcus aureus subsp. aureus COL, complete sequence	2809422	1720725	1729768	2809422	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1720725_1721244_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1721265_1723539_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1723741_1726021_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1726295_1726556_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1726574_1727714_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1727736_1728762_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1728763_1729768_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 9
NC_002951	Staphylococcus aureus subsp. aureus COL, complete sequence	2809422	1855596	1938731	2809422	transposase,protease,tRNA	Staphylococcus_phage(93.33%)	76	NA	NA
WP_001050554.1|1855596_1862157_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
WP_000836465.1|1862482_1862794_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001549041.1|1862815_1865233_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1865520_1866702_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1866811_1867765_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1867761_1868325_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757541.1|1868444_1868846_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1870424_1871252_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1871254_1871374_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1871485_1872487_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1872608_1873073_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1873085_1874267_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1874277_1874910_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077344.1|1874916_1875960_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_001261677.1|1876440_1877943_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1878465_1878780_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1878779_1880072_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1880089_1880485_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1880779_1881634_-	N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1881909_1882134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1882332_1882803_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1882915_1883359_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1883345_1883789_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1884084_1884720_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1885159_1885873_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1886132_1886435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1886690_1887056_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623474.1|1887052_1887406_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|1889488_1890322_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1890533_1891442_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1891566_1892760_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1893130_1894723_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000093392.1|1894858_1895344_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_002868962.1|1895718_1896465_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1896469_1896943_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1897008_1897266_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1897262_1898264_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1898268_1899747_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1899905_1900361_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1900663_1901314_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070653.1|1901394_1902390_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000669046.1|1902465_1903092_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000627551.1|1903132_1903477_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1903574_1904126_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1904343_1904985_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1905098_1905284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1905285_1905462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1905472_1905856_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1906591_1906735_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001791893.1|1907156_1907258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037045.1|1907605_1907983_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000072576.1|1913465_1914665_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_000028659.1|1914657_1916214_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
WP_001791797.1|1916377_1916512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1916576_1917296_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1917446_1918163_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1918264_1918372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038708.1|1918320_1919040_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.2	3.0e-129
WP_001038867.1|1919160_1919880_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1919937_1920660_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039423.1|1920784_1921501_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	96.2	2.0e-125
WP_001092763.1|1922464_1923031_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|1923504_1924203_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1924199_1924961_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1924957_1925650_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1925672_1927046_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1927055_1927574_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566316.1|1927589_1928834_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	99.8	1.1e-237
WP_001092604.1|1928826_1931820_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.2	0.0e+00
WP_000416756.1|1931884_1932028_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_001808146.1|1932919_1934239_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_047212565.1|1934264_1934429_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|1934670_1935654_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000473596.1|1935655_1936591_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_001790220.1|1937390_1937930_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000206350.1|1937942_1938731_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
