assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000012245.1_ASM1224v1	NC_007005	Pseudomonas syringae pv. syringae B728a, complete sequence	1	478149-478260	1	CRISPRCasFinder	no		cas3,DEDDh,PD-DExK,csa3,DinG	Orphan	AAGTCCGCTCTTGATTCTGGCCGAAGGCCG	30	1	2	478179-478230|478179-478230	NC_007005.1_478385-478436|NC_007005.1_478575-478626	NA	1	1	Orphan	cas3,DEDDh,PD-DExK,csa3,DinG	NA,NA	NA|150aa|up_9|NC_007005.1_470612_471062_-	cd00586, 4HBT, 4-hydroxybenzoyl-CoA thioesterase (4HBT)	NA|316aa|up_8|NC_007005.1_471116_472064_-	COG4261, COG4261, Predicted acyltransferase [General function prediction only]	NA|245aa|up_7|NC_007005.1_472060_472795_-	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|561aa|up_6|NC_007005.1_472787_474470_-	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	NA|182aa|up_5|NC_007005.1_474480_475026_-	COG4648, COG4648, Predicted membrane protein [Function unknown]	NA|85aa|up_4|NC_007005.1_475022_475277_-	PRK05350, PRK05350, acyl carrier protein; Provisional	NA|87aa|up_3|NC_007005.1_475286_475547_-	PRK09184, PRK09184, acyl carrier protein; Provisional	NA|271aa|up_2|NC_007005.1_475521_476334_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|240aa|up_1|NC_007005.1_476309_477029_-	pfam13723, Ketoacyl-synt_2, Beta-ketoacyl synthase, N-terminal domain	NA|260aa|up_0|NC_007005.1_477338_478118_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|132aa|down_0|NC_007005.1_478810_479206_-	cd14744, PAAR_CT_2, proline-alanine-alanine-arginine (PAAR) domain with uncharacterized C-terminal extension	NA|559aa|down_1|NC_007005.1_479612_481289_+	pfam16957, Mal_decarbox_Al, Malonate decarboxylase, alpha subunit, transporter	NA|292aa|down_2|NC_007005.1_481288_482164_+	PRK01237, PRK01237, triphosphoribosyl-dephospho-CoA synthase; Validated	NA|100aa|down_3|NC_007005.1_482165_482465_+	PRK01220, PRK01220, malonate decarboxylase subunit delta; Provisional	NA|284aa|down_4|NC_007005.1_482457_483309_+	PRK07189, PRK07189, malonate decarboxylase subunit beta; Reviewed	NA|267aa|down_5|NC_007005.1_483305_484106_+	pfam06833, MdcE, Malonate decarboxylase gamma subunit (MdcE)	NA|214aa|down_6|NC_007005.1_484099_484741_+	PRK01293, PRK01293, phosphoribosyl-dephospho-CoA transferase; Provisional	NA|312aa|down_7|NC_007005.1_484737_485673_+	TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit	NA|139aa|down_8|NC_007005.1_485742_486159_+	pfam03817, MadL, Malonate transporter MadL subunit	NA|255aa|down_9|NC_007005.1_486160_486925_+	TIGR00808, malonate_transporter, malonate transporter, MadM subunit
GCF_000012245.1_ASM1224v1	NC_007005	Pseudomonas syringae pv. syringae B728a, complete sequence	2	1715709-1715870	1	PILER-CR	no		cas3,DEDDh,PD-DExK,csa3,DinG	Orphan	CTGAGTTCGGAATCCGAACTC	21	0	0	NA	NA	NA	3	3	Orphan	cas3,DEDDh,PD-DExK,csa3,DinG	NA|77aa|up_4|NC_007005.1_1712491_1712722_-,NA|91aa|up_0|NC_007005.1_1714893_1715166_+,NA|136aa|down_3|NC_007005.1_1719624_1720032_-,NA|114aa|down_4|NC_007005.1_1720033_1720375_-	NA|378aa|up_9|NC_007005.1_1705405_1706539_-	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family	NA|489aa|up_8|NC_007005.1_1706690_1708157_-	pfam02810, SEC-C, SEC-C motif	NA|651aa|up_7|NC_007005.1_1708267_1710220_-	cd17919, DEXHc_Snf, DEXH/Q-box helicase domain of DEAD-like helicase Snf family proteins	NA|629aa|up_6|NC_007005.1_1710222_1712109_-	pfam14284, PcfJ, PcfJ-like protein	NA|44aa|up_5|NC_007005.1_1712212_1712344_-	COG3130, Rmf, Ribosome modulation factor [Translation, ribosomal structure and biogenesis]	NA|77aa|up_4|NC_007005.1_1712491_1712722_-	NA	NA|155aa|up_3|NC_007005.1_1712924_1713389_-	PRK08182, PRK08182, single-stranded DNA-binding protein; Provisional	NA|195aa|up_2|NC_007005.1_1713390_1713975_-	pfam11358, DUF3158, Protein of unknown function (DUF3158)	NA|260aa|up_1|NC_007005.1_1713971_1714751_-	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family	NA|91aa|up_0|NC_007005.1_1714893_1715166_+	NA	NA|246aa|down_0|NC_007005.1_1716592_1717330_-	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|587aa|down_1|NC_007005.1_1717366_1719127_-	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein	NA|106aa|down_2|NC_007005.1_1719129_1719447_-	pfam03869, Arc, Arc-like DNA binding domain	NA|136aa|down_3|NC_007005.1_1719624_1720032_-	NA	NA|114aa|down_4|NC_007005.1_1720033_1720375_-	NA	NA|449aa|down_5|NC_007005.1_1720371_1721718_-	TIGR00665, DnaB, replicative DNA helicase	NA|234aa|down_6|NC_007005.1_1721717_1722419_-	pfam10979, DUF2786, Protein of unknown function (DUF2786)	NA|252aa|down_7|NC_007005.1_1722415_1723171_-	pfam09726, Macoilin, Macoilin family	NA|287aa|down_8|NC_007005.1_1723172_1724033_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|148aa|down_9|NC_007005.1_1724382_1724826_+	pfam13438, DUF4113, Domain of unknown function (DUF4113)
GCF_000012245.1_ASM1224v1	NC_007005	Pseudomonas syringae pv. syringae B728a, complete sequence	3	1813697-1813833	2	CRISPRCasFinder	no		cas3,DEDDh,PD-DExK,csa3,DinG	Orphan	CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGC	42	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PD-DExK,csa3,DinG	NA|1349aa|up_1|NC_007005.1_1807673_1811720_+,NA|173aa|down_9|NC_007005.1_1820803_1821322_-	NA|321aa|up_9|NC_007005.1_1799853_1800816_+	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|218aa|up_8|NC_007005.1_1800835_1801489_-	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|330aa|up_7|NC_007005.1_1801573_1802563_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|266aa|up_6|NC_007005.1_1802564_1803362_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|281aa|up_5|NC_007005.1_1803348_1804191_-	COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|269aa|up_4|NC_007005.1_1804187_1804994_-	COG1524, COG1524, Uncharacterized proteins of the AP superfamily [General function prediction only]	NA|356aa|up_3|NC_007005.1_1805072_1806140_-	cd13549, PBP2_Fbp_like_3, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|240aa|up_2|NC_007005.1_1806494_1807214_+	TIGR03337, phnR, phosphonate utilization transcriptional regulator PhnR	NA|1349aa|up_1|NC_007005.1_1807673_1811720_+	NA	NA|430aa|up_0|NC_007005.1_1811971_1813261_-	PRK02813, PRK02813, putative aminopeptidase 2; Provisional	NA|212aa|down_0|NC_007005.1_1813863_1814499_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|85aa|down_1|NC_007005.1_1814589_1814844_-	PRK00296, minE, cell division topological specificity factor MinE; Reviewed	NA|271aa|down_2|NC_007005.1_1814843_1815656_-	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|247aa|down_3|NC_007005.1_1815887_1816628_-	PRK00339, minC, septum site-determining protein MinC	NA|311aa|down_4|NC_007005.1_1816748_1817681_+	PRK05646, PRK05646, lipid A biosynthesis lauroyl acyltransferase; Provisional	NA|395aa|down_5|NC_007005.1_1817713_1818898_+	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|79aa|down_6|NC_007005.1_1818939_1819176_-	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes	NA|286aa|down_7|NC_007005.1_1819159_1820017_-	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme	NA|266aa|down_8|NC_007005.1_1820016_1820814_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|173aa|down_9|NC_007005.1_1820803_1821322_-	NA
GCF_000012245.1_ASM1224v1	NC_007005	Pseudomonas syringae pv. syringae B728a, complete sequence	4	4506222-4506323	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,PD-DExK,csa3,DinG	Unclear	GCTCCGCATGGGTATGCCGTTCT	23	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,PD-DExK,csa3,DinG	NA|127aa|up_7|NC_007005.1_4500189_4500570_+,NA|63aa|up_3|NC_007005.1_4503038_4503227_+,NA|171aa|up_2|NC_007005.1_4503394_4503907_+,NA|288aa|up_0|NC_007005.1_4504849_4505713_+,NA|138aa|down_4|NC_007005.1_4512940_4513354_+	NA|322aa|up_9|NC_007005.1_4498596_4499562_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|64aa|up_8|NC_007005.1_4499785_4499977_-	pfam05532, CsbD, CsbD-like	NA|127aa|up_7|NC_007005.1_4500189_4500570_+	NA	NA|134aa|up_6|NC_007005.1_4500647_4501049_-	pfam09945, DUF2177, Predicted membrane protein (DUF2177)	NA|211aa|up_5|NC_007005.1_4501193_4501826_+	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif	NA|279aa|up_4|NC_007005.1_4501895_4502732_-	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]	NA|63aa|up_3|NC_007005.1_4503038_4503227_+	NA	NA|171aa|up_2|NC_007005.1_4503394_4503907_+	NA	NA|243aa|up_1|NC_007005.1_4504051_4504780_+	TIGR02001, gcw_chp, conserved hypothetical protein, proteobacterial	NA|288aa|up_0|NC_007005.1_4504849_4505713_+	NA	cas3|446aa|down_0|NC_007005.1_4506808_4508146_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|412aa|down_1|NC_007005.1_4508296_4509532_-	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA	NA|230aa|down_2|NC_007005.1_4509543_4510233_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|791aa|down_3|NC_007005.1_4510449_4512822_+	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein	NA|138aa|down_4|NC_007005.1_4512940_4513354_+	NA	NA|300aa|down_5|NC_007005.1_4513373_4514273_-	cd08461, PBP2_DntR_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold	NA|267aa|down_6|NC_007005.1_4514361_4515162_+	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]	NA|118aa|down_7|NC_007005.1_4515441_4515795_+	COG4925, COG4925, Uncharacterized conserved protein [Function unknown]	NA|343aa|down_8|NC_007005.1_4515852_4516881_-	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|421aa|down_9|NC_007005.1_4516877_4518140_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCF_000012245.1_ASM1224v1	NC_007005	Pseudomonas syringae pv. syringae B728a, complete sequence	5	5513908-5514002	4	CRISPRCasFinder	no		cas3,DEDDh,PD-DExK,csa3,DinG	Orphan	AAACGTTTGGCTGATGAAGCAGC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PD-DExK,csa3,DinG	NA|105aa|up_2|NC_007005.1_5510600_5510915_-,NA|80aa|up_1|NC_007005.1_5510987_5511227_-,NA|47aa|down_1|NC_007005.1_5515667_5515808_-,NA|84aa|down_3|NC_007005.1_5516211_5516463_-,NA|143aa|down_4|NC_007005.1_5516467_5516896_-,NA|119aa|down_5|NC_007005.1_5516977_5517334_-	NA|72aa|up_9|NC_007005.1_5499501_5499717_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|652aa|up_8|NC_007005.1_5500195_5502151_+	PRK05667, dnaG, DNA primase; Validated	NA|617aa|up_7|NC_007005.1_5502218_5504069_+	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated	NA|829aa|up_6|NC_007005.1_5504337_5506824_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|117aa|up_5|NC_007005.1_5508663_5509014_-	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|83aa|up_4|NC_007005.1_5509026_5509275_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|321aa|up_3|NC_007005.1_5509612_5510575_+	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|105aa|up_2|NC_007005.1_5510600_5510915_-	NA	NA|80aa|up_1|NC_007005.1_5510987_5511227_-	NA	NA|149aa|up_0|NC_007005.1_5511306_5511753_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|92aa|down_0|NC_007005.1_5515171_5515447_+	cd16363, Col_Im_like, inhibitory immunity (Im) protein of colicin (Col) deoxyribonuclease (DNase) and pyocins	NA|47aa|down_1|NC_007005.1_5515667_5515808_-	NA	NA|83aa|down_2|NC_007005.1_5515911_5516160_-	COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]	NA|84aa|down_3|NC_007005.1_5516211_5516463_-	NA	NA|143aa|down_4|NC_007005.1_5516467_5516896_-	NA	NA|119aa|down_5|NC_007005.1_5516977_5517334_-	NA	NA|517aa|down_6|NC_007005.1_5519228_5520779_-	pfam09046, AvrPtoB-E3_ubiq, AvrPtoB E3 ubiquitin ligase	NA|272aa|down_7|NC_007005.1_5521504_5522320_+	pfam01226, Form_Nir_trans, Formate/nitrite transporter	NA|211aa|down_8|NC_007005.1_5522466_5523099_-	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]	NA|1347aa|down_9|NC_007005.1_5523095_5527136_-	TIGR02353, NON-RIBOSOMAL_PEPTIDE_SYNTHETASE, non-ribosomal peptide synthetase terminal domain of unknown function
GCF_000012245.1_ASM1224v1	NC_007005	Pseudomonas syringae pv. syringae B728a, complete sequence	6	5769352-5769438	5	CRISPRCasFinder	no		cas3,DEDDh,PD-DExK,csa3,DinG	Orphan	GGGCAGAATCAAGAGCGGACTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PD-DExK,csa3,DinG	NA|64aa|up_3|NC_007005.1_5762867_5763059_+,NA	NA|222aa|up_9|NC_007005.1_5756825_5757491_-	PRK10691, PRK10691, fumarylacetoacetate hydrolase family protein	NA|465aa|up_8|NC_007005.1_5757571_5758966_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|410aa|up_7|NC_007005.1_5759126_5760356_+	PRK11790, PRK11790, phosphoglycerate dehydrogenase	NA|146aa|up_6|NC_007005.1_5760704_5761142_-	pfam14347, DUF4399, Domain of unknown function (DUF4399)	NA|212aa|up_5|NC_007005.1_5761280_5761916_-	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]	NA|253aa|up_4|NC_007005.1_5762057_5762816_+	pfam09832, DUF2059, Uncharacterized protein conserved in bacteria (DUF2059)	NA|64aa|up_3|NC_007005.1_5762867_5763059_+	NA	NA|314aa|up_2|NC_007005.1_5763055_5763997_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|796aa|up_1|NC_007005.1_5764267_5766655_+	pfam01804, Penicil_amidase, Penicillin amidase	NA|451aa|up_0|NC_007005.1_5767397_5768749_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|294aa|down_0|NC_007005.1_5769460_5770342_-	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional	NA|307aa|down_1|NC_007005.1_5770338_5771259_-	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional	NA|381aa|down_2|NC_007005.1_5771255_5772398_-	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG	NA|365aa|down_3|NC_007005.1_5772453_5773548_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|366aa|down_4|NC_007005.1_5773719_5774817_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|455aa|down_5|NC_007005.1_5774960_5776325_-	PRK07480, PRK07480, putative aminotransferase; Validated	NA|453aa|down_6|NC_007005.1_5776393_5777752_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|459aa|down_7|NC_007005.1_5778346_5779723_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|215aa|down_8|NC_007005.1_5780181_5780826_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|360aa|down_9|NC_007005.1_5780857_5781937_-	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain
