assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000013205.1_ASM1320v1	NC_007775	Synechococcus sp. JA-3-3Ab, complete sequence	1	733173-733709	1,1,1	CRT,CRISPRCasFinder,PILER-CR	no	Cas14u_CAS-V,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	Type I-E	CGGTTCACCCCCACGGGTGTGGGGACAAC,CGGTTCACCCCCACGGGTGTGGGGACAAC,GGTTCACCCCCACGGGTGTGGGGACAAC	29,29,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	8,7,7	8	TypeI-E	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	NA,NA	NA|168aa|up_9|NC_007775.1_722264_722768_+	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|179aa|up_8|NC_007775.1_723011_723548_-	cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus	NA|1097aa|up_7|NC_007775.1_723924_727215_+	TIGR00618, Nuclease_SbcCD_subunit_C, exonuclease SbcC	NA|144aa|up_6|NC_007775.1_727211_727643_-	pfam09579, Spore_YtfJ, Sporulation protein YtfJ (Spore_YtfJ)	NA|88aa|up_5|NC_007775.1_727935_728199_-	pfam11189, DUF2973, Protein of unknown function (DUF2973)	NA|107aa|up_4|NC_007775.1_728198_728519_-	pfam10792, DUF2605, Protein of unknown function (DUF2605)	NA|500aa|up_3|NC_007775.1_728568_730068_-	PRK05989, cobN, cobaltochelatase subunit CobN; Reviewed	NA|393aa|up_2|NC_007775.1_730085_731264_-	PRK12309, PRK12309, transaldolase	Cas14u_CAS-V|416aa|up_1|NC_007775.1_731378_732626_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|198aa|up_0|NC_007775.1_732513_733107_-	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	cas2|91aa|down_0|NC_007775.1_733728_734001_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|316aa|down_1|NC_007775.1_734000_734948_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|211aa|down_2|NC_007775.1_734974_735607_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|208aa|down_3|NC_007775.1_735588_736212_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|381aa|down_4|NC_007775.1_736215_737358_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|200aa|down_5|NC_007775.1_737424_738024_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|525aa|down_6|NC_007775.1_738035_739610_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|894aa|down_7|NC_007775.1_739626_742308_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	WYL|304aa|down_8|NC_007775.1_742310_743222_-	pfam13280, WYL, WYL domain	Cas14u_CAS-V|233aa|down_9|NC_007775.1_743291_743990_+	pfam01385, OrfB_IS605, Probable transposase
GCF_000013205.1_ASM1320v1	NC_007775	Synechococcus sp. JA-3-3Ab, complete sequence	2	889207-892334	2,2,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,Cas14u_CAS-V,WYL,csx3	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	Type III-A,Type III-D,Type III-C,Type III-B	GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC,GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC,GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC,GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	37,37,37,37	0	0	NA	NA	NA:NA:NA:NA	41,41,38,38	41	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	csx19|153aa|up_8|NC_007775.1_880192_880651_-,NA|46aa|up_5|NC_007775.1_882526_882664_-,csm2gr11|149aa|up_4|NC_007775.1_882667_883114_-,NA	csm3gr7|351aa|up_9|NC_007775.1_879143_880196_-	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	csx19|153aa|up_8|NC_007775.1_880192_880651_-	NA	csm3gr7|325aa|up_7|NC_007775.1_880647_881622_-	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|281aa|up_6|NC_007775.1_881676_882519_-	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	NA|46aa|up_5|NC_007775.1_882526_882664_-	NA	csm2gr11|149aa|up_4|NC_007775.1_882667_883114_-	NA	csx10gr5|408aa|up_3|NC_007775.1_883110_884334_-	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family	csm3gr7|238aa|up_2|NC_007775.1_884333_885047_-	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|767aa|up_1|NC_007775.1_885046_887347_-	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	cas6|384aa|up_0|NC_007775.1_887771_888923_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas2|93aa|down_0|NC_007775.1_892608_892887_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|164aa|down_1|NC_007775.1_892886_893378_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	Cas14u_CAS-V|398aa|down_2|NC_007775.1_893439_894633_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	WYL|464aa|down_3|NC_007775.1_894896_896288_-	TIGR03985, hypothetical_protein_sll7078, CRISPR-associated protein, TIGR03985 family	csx3|307aa|down_4|NC_007775.1_896417_897338_+	cd09681, Csx3_III-U, CRISPR/Cas system-associated protein Csx3	NA|288aa|down_5|NC_007775.1_897553_898417_-	TIGR01184, Nitrate_transport_ATP-binding_protein_NrtC, nitrate transport ATP-binding subunits C and D	NA|670aa|down_6|NC_007775.1_898479_900489_-	TIGR01184, Nitrate_transport_ATP-binding_protein_NrtC, nitrate transport ATP-binding subunits C and D	NA|276aa|down_7|NC_007775.1_900648_901476_-	TIGR01183, Nitrate_transport_permease_protein_NrtB, nitrate ABC transporter, permease protein	NA|435aa|down_8|NC_007775.1_902015_903320_-	pfam13379, NMT1_2, NMT1-like family	NA|319aa|down_9|NC_007775.1_903530_904487_+	pfam14249, Tocopherol_cycl, Tocopherol cyclase
GCF_000013205.1_ASM1320v1	NC_007775	Synechococcus sp. JA-3-3Ab, complete sequence	3	1139963-1140602	4,3,3	PILER-CR,CRISPRCasFinder,CRT	no	csa3	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	Type I-A	GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC,GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC,GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	37,37,37	0	0	NA	NA	NA:NA:NA	8,8,8	8	Orphan	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	NA|218aa|up_6|NC_007775.1_1131147_1131801_-,NA|108aa|down_3|NC_007775.1_1143360_1143684_+,NA|105aa|down_6|NC_007775.1_1146285_1146600_+,NA|56aa|down_8|NC_007775.1_1148964_1149132_-	NA|343aa|up_9|NC_007775.1_1127507_1128536_+	pfam11805, DUF3326, Protein of unknown function (DUF3326)	NA|153aa|up_8|NC_007775.1_1128532_1128991_-	COG3686, COG3686, Predicted membrane protein [Function unknown]	NA|685aa|up_7|NC_007775.1_1129062_1131117_-	cd02035, ArsA, Arsenical pump-driving ATPase ArsA	NA|218aa|up_6|NC_007775.1_1131147_1131801_-	NA	NA|290aa|up_5|NC_007775.1_1131804_1132674_-	COG3411, COG3411, Ferredoxin [Energy production and conversion]	NA|139aa|up_4|NC_007775.1_1132683_1133100_-	pfam07845, DUF1636, Protein of unknown function (DUF1636)	NA|648aa|up_3|NC_007775.1_1133197_1135141_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|600aa|up_2|NC_007775.1_1135413_1137213_-	pfam07602, DUF1565, Protein of unknown function (DUF1565)	NA|406aa|up_1|NC_007775.1_1137367_1138585_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|377aa|up_0|NC_007775.1_1138773_1139904_+	pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family	NA|364aa|down_0|NC_007775.1_1140937_1142029_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|211aa|down_1|NC_007775.1_1142038_1142671_-	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis]	NA|102aa|down_2|NC_007775.1_1142910_1143216_-	PRK08881, rpsN, 30S ribosomal protein S14; Reviewed	NA|108aa|down_3|NC_007775.1_1143360_1143684_+	NA	NA|507aa|down_4|NC_007775.1_1143680_1145201_-	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|164aa|down_5|NC_007775.1_1145281_1145773_-	pfam08695, Coa1, Cytochrome oxidase complex assembly protein 1	NA|105aa|down_6|NC_007775.1_1146285_1146600_+	NA	NA|743aa|down_7|NC_007775.1_1146622_1148851_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|56aa|down_8|NC_007775.1_1148964_1149132_-	NA	NA|308aa|down_9|NC_007775.1_1149395_1150319_+	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain
GCF_000013205.1_ASM1320v1	NC_007775	Synechococcus sp. JA-3-3Ab, complete sequence	4	1173743-1173841	4	CRISPRCasFinder	no	c2c9_V-U4,DinG	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	Type V-U4, Type IV-A?	TTGGCTTCCCAAAGGTAGGCCCCG	24	0	0	NA	NA	NA	1	1	TypeV-U4,TypeIV-A?	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	NA|65aa|up_3|NC_007775.1_1170709_1170904_+,NA|143aa|down_1|NC_007775.1_1176172_1176601_+	NA|845aa|up_9|NC_007775.1_1163922_1166457_+	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only]	NA|137aa|up_8|NC_007775.1_1166504_1166915_+	pfam08872, KGK, KGK domain	NA|139aa|up_7|NC_007775.1_1167238_1167655_+	pfam08872, KGK, KGK domain	NA|85aa|up_6|NC_007775.1_1167657_1167912_+	pfam14279, HNH_5, HNH endonuclease	NA|323aa|up_5|NC_007775.1_1167977_1168946_-	COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only]	DinG|513aa|up_4|NC_007775.1_1169040_1170579_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|65aa|up_3|NC_007775.1_1170709_1170904_+	NA	NA|321aa|up_2|NC_007775.1_1170900_1171863_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|427aa|up_1|NC_007775.1_1171868_1173149_-	PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional	NA|92aa|up_0|NC_007775.1_1173296_1173572_-	pfam06305, LapA_dom, Lipopolysaccharide assembly protein A domain	NA|622aa|down_0|NC_007775.1_1174188_1176054_-	PRK14360, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|143aa|down_1|NC_007775.1_1176172_1176601_+	NA	NA|152aa|down_2|NC_007775.1_1176915_1177371_+	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes	NA|374aa|down_3|NC_007775.1_1177431_1178553_+	cd03802, GT4_AviGT4-like, UDP-Glc:tetrahydrobiopterin alpha-glucosyltransferase and similar proteins	NA|298aa|down_4|NC_007775.1_1178650_1179544_+	COG3881, COG3881, PRC-barrel domain containing protein [General function prediction only]	NA|327aa|down_5|NC_007775.1_1179715_1180696_-	PLN02578, PLN02578, hydrolase	NA|75aa|down_6|NC_007775.1_1180725_1180950_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|258aa|down_7|NC_007775.1_1181080_1181854_-	PRK12896, PRK12896, methionine aminopeptidase; Reviewed	NA|194aa|down_8|NC_007775.1_1181892_1182474_-	PRK00279, adk, adenylate kinase; Reviewed	NA|433aa|down_9|NC_007775.1_1182473_1183772_-	PRK09204, secY, preprotein translocase subunit SecY; Reviewed
GCF_000013205.1_ASM1320v1	NC_007775	Synechococcus sp. JA-3-3Ab, complete sequence	5	1260139-1260640	5,5,4	CRISPRCasFinder,PILER-CR,CRT	no		cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	Orphan	AGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC,GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC,GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	37,36,36	0	0	NA	NA	NA:NA:NA	6,5,6	6	Orphan	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	NA,NA|77aa|down_8|NC_007775.1_1269467_1269698_-	NA|558aa|up_9|NC_007775.1_1249104_1250778_-	PRK01490, tig, trigger factor; Provisional	NA|128aa|up_8|NC_007775.1_1250866_1251250_-	pfam06305, LapA_dom, Lipopolysaccharide assembly protein A domain	NA|347aa|up_7|NC_007775.1_1251334_1252375_-	CHL00045, ccsA, cytochrome c biogenesis protein	NA|460aa|up_6|NC_007775.1_1252473_1253853_+	NF033186, internalin_K, class 1 internalin InlK	NA|319aa|up_5|NC_007775.1_1254522_1255479_+	TIGR02997, RNA_polymerase_sigma_subunit_sigma70/sigma32, RNA polymerase sigma factor, cyanobacterial RpoD-like family	NA|379aa|up_4|NC_007775.1_1255462_1256599_-	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|145aa|up_3|NC_007775.1_1256665_1257100_+	TIGR00068, Lactoylglutathione_lyase, lactoylglutathione lyase	NA|364aa|up_2|NC_007775.1_1257124_1258216_-	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|160aa|up_1|NC_007775.1_1258475_1258955_+	cd08357, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) familyprotein, glyoxalase I, and type I ring-cleaving dioxygenases	NA|286aa|up_0|NC_007775.1_1258972_1259830_+	pfam06485, DUF1092, Protein of unknown function (DUF1092)	NA|334aa|down_0|NC_007775.1_1260708_1261710_+	PRK02714, PRK02714, o-succinylbenzoate synthase	NA|376aa|down_1|NC_007775.1_1261706_1262835_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|118aa|down_2|NC_007775.1_1263148_1263502_+	pfam14271, DUF4359, Domain of unknown function (DUF4359)	NA|374aa|down_3|NC_007775.1_1263498_1264620_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|407aa|down_4|NC_007775.1_1264885_1266106_-	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	NA|226aa|down_5|NC_007775.1_1266258_1266936_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|413aa|down_6|NC_007775.1_1266980_1268219_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|340aa|down_7|NC_007775.1_1268402_1269422_-	sd00006, TPR, Tetratricopeptide repeat	NA|77aa|down_8|NC_007775.1_1269467_1269698_-	NA	NA|874aa|down_9|NC_007775.1_1270023_1272645_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated
GCF_000013205.1_ASM1320v1	NC_007775	Synechococcus sp. JA-3-3Ab, complete sequence	6	1438156-1438509	5	CRT	no	Cas14u_CAS-V	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	Unclear	CCAGAACACAGAGGCCAT	18	0	0	NA	NA	NA	8	8	Unclear	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	NA|113aa|up_7|NC_007775.1_1430022_1430361_-,NA|127aa|up_5|NC_007775.1_1431241_1431622_-,NA|49aa|up_3|NC_007775.1_1432351_1432498_+,NA	NA|510aa|up_9|NC_007775.1_1427887_1429417_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|106aa|up_8|NC_007775.1_1429597_1429915_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|113aa|up_7|NC_007775.1_1430022_1430361_-	NA	NA|225aa|up_6|NC_007775.1_1430500_1431175_-	pfam05685, Uma2, Putative restriction endonuclease	NA|127aa|up_5|NC_007775.1_1431241_1431622_-	NA	NA|100aa|up_4|NC_007775.1_1431850_1432150_-	CHL00134, petF, ferredoxin; Validated	NA|49aa|up_3|NC_007775.1_1432351_1432498_+	NA	NA|768aa|up_2|NC_007775.1_1432652_1434956_+	TIGR04247, nitrous_oxide_maturation_protein_NosD, nitrous oxide reductase family maturation protein NosD	NA|707aa|up_1|NC_007775.1_1435204_1437325_+	COG3889, COG3889, Predicted solute binding protein [General function prediction only]	NA|169aa|up_0|NC_007775.1_1437520_1438027_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|222aa|down_0|NC_007775.1_1438735_1439401_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|581aa|down_1|NC_007775.1_1439921_1441664_+	NF033186, internalin_K, class 1 internalin InlK	NA|487aa|down_2|NC_007775.1_1441805_1443266_-	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional	NA|423aa|down_3|NC_007775.1_1443424_1444693_+	pfam13847, Methyltransf_31, Methyltransferase domain	Cas14u_CAS-V|400aa|down_4|NC_007775.1_1445168_1446368_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|198aa|down_5|NC_007775.1_1446255_1446849_-	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	NA|374aa|down_6|NC_007775.1_1447463_1448585_-	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|147aa|down_7|NC_007775.1_1448814_1449255_-	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|104aa|down_8|NC_007775.1_1449433_1449745_-	pfam03929, PepSY_TM, PepSY-associated TM region	NA|878aa|down_9|NC_007775.1_1449820_1452454_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
GCF_000013205.1_ASM1320v1	NC_007775	Synechococcus sp. JA-3-3Ab, complete sequence	7	1860020-1860135	6	CRISPRCasFinder	no		cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	Orphan	AGTTCCCCCTTCGTGGGGATCCCTAGAAATTGGAAAC	37	0	0	NA	NA	NA	1	1	Orphan	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	NA,NA|50aa|down_9|NC_007775.1_1873550_1873700_-	NA|551aa|up_9|NC_007775.1_1842336_1843989_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|70aa|up_8|NC_007775.1_1844017_1844227_-	COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism]	NA|256aa|up_7|NC_007775.1_1844476_1845244_+	cd13537, PBP2_YvgL_like, Substrate binding domain of putative molybdate-binding protein YvgL and similar proteins;the type 2 periplasmic binding protein fold	NA|596aa|up_6|NC_007775.1_1845267_1847055_+	COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|641aa|up_5|NC_007775.1_1847073_1848996_-	cd11646, Precorrin_3B_C17_MT, Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH)	NA|355aa|up_4|NC_007775.1_1850153_1851218_+	TIGR01151, Photosystem_QB_protein, photosystem II, DI subunit (also called Q(B))	NA|371aa|up_3|NC_007775.1_1851391_1852504_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|900aa|up_2|NC_007775.1_1852541_1855241_-	CHL00091, apcE, phycobillisome linker protein	NA|710aa|up_1|NC_007775.1_1855481_1857611_+	pfam04577, DUF563, Protein of unknown function (DUF563)	NA|657aa|up_0|NC_007775.1_1857738_1859709_-	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]	NA|274aa|down_0|NC_007775.1_1860269_1861091_-	cd01144, BtuF, Cobalamin binding protein BtuF	NA|516aa|down_1|NC_007775.1_1861250_1862798_-	TIGR02730, Carotenoid_isomerase, carotene isomerase	NA|316aa|down_2|NC_007775.1_1862897_1863845_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|381aa|down_3|NC_007775.1_1863838_1864981_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|287aa|down_4|NC_007775.1_1865039_1865900_-	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|183aa|down_5|NC_007775.1_1866056_1866605_+	PRK00083, frr, ribosome recycling factor; Reviewed	NA|904aa|down_6|NC_007775.1_1866700_1869412_+	cd04595, CBS_pair_DHH_polyA_Pol_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the DHH and nucleotidyltransferase (NT) domains	NA|312aa|down_7|NC_007775.1_1869501_1870437_+	cd07333, M48C_bepA_like, Peptidase M48C Ste24p bepA-like, integral membrane protein	NA|336aa|down_8|NC_007775.1_1872539_1873547_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|50aa|down_9|NC_007775.1_1873550_1873700_-	NA
GCF_000013205.1_ASM1320v1	NC_007775	Synechococcus sp. JA-3-3Ab, complete sequence	8	1960214-1960325	7	CRISPRCasFinder	no	Cas14u_CAS-V,c2c9_V-U4	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	Unclear	TGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	37	0	0	NA	NA	NA	1	1	Unclear	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	NA,NA|188aa|down_3|NC_007775.1_1963339_1963903_-	Cas14u_CAS-V|416aa|up_9|NC_007775.1_1949126_1950374_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|223aa|up_8|NC_007775.1_1950383_1951052_-	pfam11152, CCB2_CCB4, Cofactor assembly of complex C subunit B, CCB2/CCB4	NA|175aa|up_7|NC_007775.1_1951109_1951634_-	smart00318, SNc, Staphylococcal nuclease homologues	NA|385aa|up_6|NC_007775.1_1951777_1952932_-	pfam01837, HcyBio, Homocysteine biosynthesis enzyme, sulfur-incorporation	NA|265aa|up_5|NC_007775.1_1953066_1953861_-	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|195aa|up_4|NC_007775.1_1954078_1954663_-	pfam01789, PsbP, PsbP	NA|761aa|up_3|NC_007775.1_1954757_1957040_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|290aa|up_2|NC_007775.1_1957238_1958108_-	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|162aa|up_1|NC_007775.1_1958287_1958773_+	COG0633, Fdx, Ferredoxin [Energy production and conversion]	NA|474aa|up_0|NC_007775.1_1958779_1960201_+	COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]	NA|553aa|down_0|NC_007775.1_1960583_1962242_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|194aa|down_1|NC_007775.1_1962279_1962861_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|146aa|down_2|NC_007775.1_1962898_1963336_-	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily	NA|188aa|down_3|NC_007775.1_1963339_1963903_-	NA	NA|270aa|down_4|NC_007775.1_1964217_1965027_-	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|192aa|down_5|NC_007775.1_1965093_1965669_+	COG3857, AddB, ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair]	c2c9_V-U4|409aa|down_6|NC_007775.1_1966854_1968081_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|167aa|down_7|NC_007775.1_1968160_1968661_+	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|159aa|down_8|NC_007775.1_1968829_1969306_-	pfam01797, Y1_Tnp, Transposase IS200 like	c2c9_V-U4|424aa|down_9|NC_007775.1_1969261_1970533_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_000013205.1_ASM1320v1	NC_007775	Synechococcus sp. JA-3-3Ab, complete sequence	9	2327972-2329201	8,6,6	CRISPRCasFinder,CRT,PILER-CR	no	PD-DExK	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	Unclear	GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC,GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC,CCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	36,36,33	0	0	NA	NA	NA:NA:NA	16,16,15	16	Orphan	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	NA|123aa|up_8|NC_007775.1_2320276_2320645_+,NA|292aa|up_6|NC_007775.1_2321792_2322668_+,NA|180aa|up_5|NC_007775.1_2322725_2323265_+,NA	NA|240aa|up_9|NC_007775.1_2319169_2319889_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|123aa|up_8|NC_007775.1_2320276_2320645_+	NA	NA|269aa|up_7|NC_007775.1_2320812_2321619_+	pfam08239, SH3_3, Bacterial SH3 domain	NA|292aa|up_6|NC_007775.1_2321792_2322668_+	NA	NA|180aa|up_5|NC_007775.1_2322725_2323265_+	NA	NA|215aa|up_4|NC_007775.1_2323267_2323912_+	PRK06265, PRK06265, cobalt transporter CbiM	NA|272aa|up_3|NC_007775.1_2323898_2324714_+	TIGR02454, Uncharacterized_protein_MJ1089, cobalt ECF transporter T component CbiQ	NA|461aa|up_2|NC_007775.1_2324849_2326232_+	TIGR01125, Ribosomal_protein_S12_methylthiotransferase_RimO, ribosomal protein S12 methylthiotransferase RimO	NA|231aa|up_1|NC_007775.1_2326262_2326955_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|350aa|up_0|NC_007775.1_2326911_2327961_-	PRK02746, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA|326aa|down_0|NC_007775.1_2329475_2330453_+	CHL00144, odpB, pyruvate dehydrogenase E1 component beta subunit; Validated	NA|400aa|down_1|NC_007775.1_2331573_2332773_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|632aa|down_2|NC_007775.1_2332787_2334683_-	PRK05667, dnaG, DNA primase; Validated	NA|116aa|down_3|NC_007775.1_2334828_2335176_+	PRK13697, PRK13697, cytochrome c6; Provisional	NA|116aa|down_4|NC_007775.1_2335175_2335523_+	pfam01744, GLTT, GLTT repeat (6 copies)	NA|189aa|down_5|NC_007775.1_2335567_2336134_+	pfam07987, DUF1775, Domain of unkown function (DUF1775)	NA|539aa|down_6|NC_007775.1_2336151_2337768_+	pfam04234, CopC, CopC domain	NA|953aa|down_7|NC_007775.1_2337764_2340623_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|133aa|down_8|NC_007775.1_2340707_2341106_-	pfam14251, DUF4346, Domain of unknown function (DUF4346)	NA|345aa|down_9|NC_007775.1_2341358_2342393_+	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
GCF_000013205.1_ASM1320v1	NC_007775	Synechococcus sp. JA-3-3Ab, complete sequence	10	2496843-2496919	9	CRISPRCasFinder	no		cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	Orphan	TATCGCTACGCGACGCTCTCGCGAA	25	0	0	NA	NA	NA	1	1	Orphan	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	NA,NA|231aa|down_4|NC_007775.1_2501427_2502120_-	NA|329aa|up_9|NC_007775.1_2483585_2484572_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|193aa|up_8|NC_007775.1_2486003_2486582_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|725aa|up_7|NC_007775.1_2486620_2488795_-	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|320aa|up_6|NC_007775.1_2488853_2489813_-	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|286aa|up_5|NC_007775.1_2489812_2490670_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|334aa|up_4|NC_007775.1_2490775_2491777_+	TIGR04409, LptC_YrbK, LPS export ABC transporter periplasmic protein LptC	NA|555aa|up_3|NC_007775.1_2491859_2493524_+	cd16148, sulfatase_like, uncharacterized sulfatase subfamily	NA|163aa|up_2|NC_007775.1_2493527_2494016_-	pfam12049, DUF3531, Protein of unknown function (DUF3531)	NA|254aa|up_1|NC_007775.1_2494429_2495191_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|522aa|up_0|NC_007775.1_2495196_2496762_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|221aa|down_0|NC_007775.1_2497672_2498335_-	pfam05728, UPF0227, Uncharacterized protein family (UPF0227)	NA|80aa|down_1|NC_007775.1_2498349_2498589_-	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|262aa|down_2|NC_007775.1_2499424_2500210_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|247aa|down_3|NC_007775.1_2500690_2501431_+	PRK02816, PRK02816, phycocyanobilin:ferredoxin oxidoreductase; Validated	NA|231aa|down_4|NC_007775.1_2501427_2502120_-	NA	NA|311aa|down_5|NC_007775.1_2502680_2503613_+	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase	NA|284aa|down_6|NC_007775.1_2503549_2504401_+	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|420aa|down_7|NC_007775.1_2504481_2505741_+	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|510aa|down_8|NC_007775.1_2505748_2507278_+	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|279aa|down_9|NC_007775.1_2507292_2508129_-	cd00293, USP_Like, Usp: Universal stress protein family
GCF_000013205.1_ASM1320v1	NC_007775	Synechococcus sp. JA-3-3Ab, complete sequence	11	2557478-2558125	10,7,7	CRISPRCasFinder,CRT,PILER-CR	no	cas2,csx18,csm3gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csx1	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	Type III-A,Type III-D,Type III-C,Type III-B	GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC,NNNNNNNNNGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC,GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	36,45,36	0	0	NA	NA	NA:NA:NA	8,7,3	8	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	NA,csx18|100aa|down_2|NC_007775.1_2560973_2561273_-,cmr5gr11|131aa|down_5|NC_007775.1_2563934_2564327_-	NA|462aa|up_9|NC_007775.1_2545022_2546408_+	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional	NA|511aa|up_8|NC_007775.1_2546832_2548365_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|258aa|up_7|NC_007775.1_2548506_2549280_+	cd04279, ZnMc_MMP_like_1, Zinc-dependent metalloprotease; MMP_like sub-family 1	NA|279aa|up_6|NC_007775.1_2549276_2550113_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|257aa|up_5|NC_007775.1_2550122_2550893_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|364aa|up_4|NC_007775.1_2550889_2551981_-	cd01017, AdcA, Metal binding protein AdcA	NA|148aa|up_3|NC_007775.1_2551994_2552438_-	pfam02657, SufE, Fe-S metabolism associated domain	NA|370aa|up_2|NC_007775.1_2552548_2553658_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|141aa|up_1|NC_007775.1_2555605_2556028_+	pfam01951, Archease, Archease protein family (MTH1598/TM1083)	NA|477aa|up_0|NC_007775.1_2556040_2557471_+	pfam01139, RtcB, tRNA-splicing ligase RtcB	NA|289aa|down_0|NC_007775.1_2558325_2559192_-	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]	cas2|93aa|down_1|NC_007775.1_2559706_2559985_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	csx18|100aa|down_2|NC_007775.1_2560973_2561273_-	NA	csm3gr7|653aa|down_3|NC_007775.1_2561305_2563264_-	pfam03787, RAMPs, RAMP superfamily	NA|214aa|down_4|NC_007775.1_2563293_2563935_-	pfam05685, Uma2, Putative restriction endonuclease	cmr5gr11|131aa|down_5|NC_007775.1_2563934_2564327_-	NA	cmr4gr7|257aa|down_6|NC_007775.1_2564340_2565111_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|375aa|down_7|NC_007775.1_2565156_2566281_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cas10|998aa|down_8|NC_007775.1_2566277_2569271_-	pfam12469, DUF3692, CRISPR-associated protein	csx1|450aa|down_9|NC_007775.1_2569517_2570867_-	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family
GCF_000013205.1_ASM1320v1	NC_007775	Synechococcus sp. JA-3-3Ab, complete sequence	12	2559270-2559458	8,11	PILER-CR,CRISPRCasFinder	no	cas2,csx18,csm3gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csx1	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	Type III-A,Type III-D,Type III-C,Type III-B	AGGGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACA,GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	40,36	0	0	NA	NA	NA:NA	2,2	2	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	cas2,c2c9_V-U4,Cas14u_CAS-V,cas14k,Cas9_archaeal,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csm6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,csx3,csa3,DinG,PD-DExK,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1	NA,csx18|100aa|down_1|NC_007775.1_2560973_2561273_-,cmr5gr11|131aa|down_4|NC_007775.1_2563934_2564327_-	NA|511aa|up_9|NC_007775.1_2546832_2548365_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|258aa|up_8|NC_007775.1_2548506_2549280_+	cd04279, ZnMc_MMP_like_1, Zinc-dependent metalloprotease; MMP_like sub-family 1	NA|279aa|up_7|NC_007775.1_2549276_2550113_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|257aa|up_6|NC_007775.1_2550122_2550893_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|364aa|up_5|NC_007775.1_2550889_2551981_-	cd01017, AdcA, Metal binding protein AdcA	NA|148aa|up_4|NC_007775.1_2551994_2552438_-	pfam02657, SufE, Fe-S metabolism associated domain	NA|370aa|up_3|NC_007775.1_2552548_2553658_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|141aa|up_2|NC_007775.1_2555605_2556028_+	pfam01951, Archease, Archease protein family (MTH1598/TM1083)	NA|477aa|up_1|NC_007775.1_2556040_2557471_+	pfam01139, RtcB, tRNA-splicing ligase RtcB	NA|289aa|up_0|NC_007775.1_2558325_2559192_-	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]	cas2|93aa|down_0|NC_007775.1_2559706_2559985_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	csx18|100aa|down_1|NC_007775.1_2560973_2561273_-	NA	csm3gr7|653aa|down_2|NC_007775.1_2561305_2563264_-	pfam03787, RAMPs, RAMP superfamily	NA|214aa|down_3|NC_007775.1_2563293_2563935_-	pfam05685, Uma2, Putative restriction endonuclease	cmr5gr11|131aa|down_4|NC_007775.1_2563934_2564327_-	NA	cmr4gr7|257aa|down_5|NC_007775.1_2564340_2565111_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|375aa|down_6|NC_007775.1_2565156_2566281_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cas10|998aa|down_7|NC_007775.1_2566277_2569271_-	pfam12469, DUF3692, CRISPR-associated protein	csx1|450aa|down_8|NC_007775.1_2569517_2570867_-	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family	NA|195aa|down_9|NC_007775.1_2571015_2571600_+	pfam05685, Uma2, Putative restriction endonuclease
