assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000013265.1_ASM1326v1	NC_007946	Escherichia coli UTI89, complete sequence	1	725998-726128	1	CRISPRCasFinder	no		DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL	Orphan	AGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAA	36	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL,RT	NA|125aa|up_6|NC_007946.1_720250_720625_-,NA|36aa|up_4|NC_007946.1_722261_722369_-,NA	NA|245aa|up_9|NC_007946.1_717494_718229_+	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins	NA|264aa|up_8|NC_007946.1_718264_719056_+	PRK10445, PRK10445, endonuclease VIII; Provisional	NA|349aa|up_7|NC_007946.1_719052_720099_-	COG3180, AbrB, Putative ammonia monooxygenase [General function prediction only]	NA|125aa|up_6|NC_007946.1_720250_720625_-	NA	NA|428aa|up_5|NC_007946.1_720772_722056_-	PRK05614, gltA, citrate synthase	NA|36aa|up_4|NC_007946.1_722261_722369_-	NA	NA|135aa|up_3|NC_007946.1_722749_723154_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|NC_007946.1_723147_723495_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|NC_007946.1_723494_725261_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|NC_007946.1_725276_725993_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|NC_007946.1_726353_729155_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|NC_007946.1_729169_730387_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|NC_007946.1_730480_731647_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|NC_007946.1_731646_732516_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|372aa|down_4|NC_007946.1_732755_733871_+	sd00006, TPR, Tetratricopeptide repeat	NA|523aa|down_5|NC_007946.1_735200_736769_+	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|380aa|down_6|NC_007946.1_736784_737924_+	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|38aa|down_7|NC_007946.1_737938_738052_+	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|98aa|down_8|NC_007946.1_738051_738345_+	PRK10588, PRK10588, hypothetical protein; Provisional	NA|135aa|down_9|NC_007946.1_738494_738899_+	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional
GCF_000013265.1_ASM1326v1	NC_007946	Escherichia coli UTI89, complete sequence	2	886538-887045	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas7f,cas6f	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	1	1	886986-887017	NC_007941.1_64851-64882	I-F:I-F:I-F	7,8,8	8	TypeI-F	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL,RT	NA,NA	NA|551aa|up_9|NC_007946.1_873120_874773_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NC_007946.1_874916_875816_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NC_007946.1_876136_876832_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NC_007946.1_877257_878916_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NC_007946.1_878912_879869_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NC_007946.1_880019_881135_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NC_007946.1_881131_883078_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NC_007946.1_883150_883375_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NC_007946.1_883697_884018_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NC_007946.1_884048_886325_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|down_0|NC_007946.1_887217_888201_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|down_1|NC_007946.1_888197_891431_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|down_2|NC_007946.1_891760_893068_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas7f|334aa|down_3|NC_007946.1_893998_895000_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_4|NC_007946.1_895010_895565_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_5|NC_007946.1_896606_896825_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_6|NC_007946.1_897109_897814_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_7|NC_007946.1_897855_899577_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_8|NC_007946.1_899577_901344_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_9|NC_007946.1_901466_902432_-	PRK10262, PRK10262, thioredoxin reductase; Provisional
GCF_000013265.1_ASM1326v1	NC_007946	Escherichia coli UTI89, complete sequence	3	896106-896494	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas7f,cas6f	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	1	1	896315-896346	NC_007941.1_46371-46340	I-F:I-F:I-F	5,6,6	6	TypeI-F	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL,RT	NA,NA	NA|372aa|up_9|NC_007946.1_880019_881135_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_8|NC_007946.1_881131_883078_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_7|NC_007946.1_883150_883375_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_6|NC_007946.1_883697_884018_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_5|NC_007946.1_884048_886325_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|up_4|NC_007946.1_887217_888201_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|up_3|NC_007946.1_888197_891431_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|up_2|NC_007946.1_891760_893068_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas7f|334aa|up_1|NC_007946.1_893998_895000_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|up_0|NC_007946.1_895010_895565_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_0|NC_007946.1_896606_896825_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NC_007946.1_897109_897814_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NC_007946.1_897855_899577_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NC_007946.1_899577_901344_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NC_007946.1_901466_902432_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NC_007946.1_902975_903470_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1348aa|down_6|NC_007946.1_903604_907648_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NC_007946.1_907806_908418_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NC_007946.1_908428_909772_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NC_007946.1_909862_911155_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_000013265.1_ASM1326v1	NC_007946	Escherichia coli UTI89, complete sequence	4	4313732-4313933	3	PILER-CR	no		DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL	Orphan	GTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAA	36	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL,RT	NA,NA	NA|252aa|up_9|NC_007946.1_4305281_4306037_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|202aa|up_8|NC_007946.1_4306050_4306656_+	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|547aa|up_7|NC_007946.1_4306652_4308293_+	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|90aa|up_6|NC_007946.1_4308371_4308641_+	PRK03554, tatA, Sec-independent protein translocase subunit TatA	NA|172aa|up_5|NC_007946.1_4308644_4309160_+	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB	NA|259aa|up_4|NC_007946.1_4309162_4309939_+	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|261aa|up_3|NC_007946.1_4309980_4310763_+	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD	NA|163aa|up_2|NC_007946.1_4310759_4311248_-	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH	NA|498aa|up_1|NC_007946.1_4311414_4312908_+	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|234aa|up_0|NC_007946.1_4312953_4313655_+	PRK08051, fre, FMN reductase; Validated	NA|388aa|down_0|NC_007946.1_4313937_4315101_-	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed	NA|730aa|down_1|NC_007946.1_4315110_4317300_-	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|444aa|down_2|NC_007946.1_4317489_4318821_+	PRK13607, PRK13607, proline dipeptidase; Provisional	NA|205aa|down_3|NC_007946.1_4318820_4319435_+	PRK11568, PRK11568, IMPACT family protein	NA|484aa|down_4|NC_007946.1_4319473_4320925_+	PRK10750, PRK10750, Trk system potassium transporter TrkH	NA|182aa|down_5|NC_007946.1_4320936_4321482_+	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA|176aa|down_6|NC_007946.1_4327062_4327590_-	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional	NA|195aa|down_7|NC_007946.1_4327571_4328156_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|90aa|down_8|NC_007946.1_4328225_4328495_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|329aa|down_9|NC_007946.1_4328571_4329558_+	PRK11768, PRK11768, serine/threonine protein kinase
GCF_000013265.1_ASM1326v1	NC_007946	Escherichia coli UTI89, complete sequence	5	4554647-4554774	4	CRISPRCasFinder	no		DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL	Orphan	GCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACA	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL,RT	NA,NA	NA|529aa|up_9|NC_007946.1_4544242_4545829_+	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]	NA|108aa|up_8|NC_007946.1_4545831_4546155_-	PRK10219, PRK10219, superoxide response transcriptional regulator SoxS	NA|155aa|up_7|NC_007946.1_4546240_4546705_+	PRK15002, PRK15002, redox-sensitive transcriptional activator SoxR	NA|450aa|up_6|NC_007946.1_4547251_4548601_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|550aa|up_5|NC_007946.1_4548751_4550401_+	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309	NA|295aa|up_4|NC_007946.1_4550436_4551321_-	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold	NA|137aa|up_3|NC_007946.1_4551424_4551835_+	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only]	NA|230aa|up_2|NC_007946.1_4551827_4552517_+	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	NA|550aa|up_1|NC_007946.1_4552555_4554205_-	PRK09395, actP, cation/acetate symporter ActP	NA|105aa|up_0|NC_007946.1_4554201_4554516_-	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|653aa|down_0|NC_007946.1_4554807_4556766_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|479aa|down_1|NC_007946.1_4557157_4558594_+	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase	NA|189aa|down_2|NC_007946.1_4558638_4559205_+	PRK11659, PRK11659, cytochrome c nitrite reductase pentaheme subunit; Provisional	NA|224aa|down_3|NC_007946.1_4559201_4559873_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|319aa|down_4|NC_007946.1_4559869_4560826_+	TIGR03148, cyt_nit_nrfD, cytochrome c nitrite reductase, NrfD subunit	NA|573aa|down_5|NC_007946.1_4560845_4562564_+	PRK10369, PRK10369, heme lyase subunit NrfE; Provisional	NA|128aa|down_6|NC_007946.1_4562556_4562940_+	PRK10144, PRK10144, formate-dependent nitrite reductase complex subunit NrfF; Provisional	NA|199aa|down_7|NC_007946.1_4562936_4563533_+	PRK10370, PRK10370, formate-dependent nitrite reductase complex subunit NrfG; Provisional	NA|438aa|down_8|NC_007946.1_4563875_4565189_+	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|230aa|down_9|NC_007946.1_4565336_4566026_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]
GCF_000013265.1_ASM1326v1	NC_007946	Escherichia coli UTI89, complete sequence	6	4765988-4766127	5	CRISPRCasFinder	no		DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL	Orphan	TGTGTAGGTCGGATAAGGCGTTCACGTCGCATCCGACAATAACA	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL,RT	NA,NA	NA|335aa|up_9|NC_007946.1_4754532_4755537_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|315aa|up_8|NC_007946.1_4755547_4756492_-	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|407aa|up_7|NC_007946.1_4756502_4757723_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|151aa|up_6|NC_007946.1_4758400_4758853_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|335aa|up_5|NC_007946.1_4758898_4759903_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NC_007946.1_4760064_4760481_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NC_007946.1_4760657_4761161_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|396aa|up_2|NC_007946.1_4761353_4762541_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NC_007946.1_4762587_4765443_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NC_007946.1_4765442_4765886_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NC_007946.1_4766143_4767655_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NC_007946.1_4767921_4769022_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NC_007946.1_4769021_4770104_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NC_007946.1_4770264_4771767_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NC_007946.1_4771844_4772843_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NC_007946.1_4772909_4774229_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NC_007946.1_4774293_4775058_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NC_007946.1_4775081_4776113_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NC_007946.1_4776329_4776893_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NC_007946.1_4776896_4777916_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
