The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_007908	Rhodoferax ferrireducens T118, complete sequence	4712337	1223381	1282611	4712337	integrase,transposase	uncultured_virus(40.0%)	58	1222513:1222527	1283756:1283770
1222513:1222527	attL	TGCGACGGCAAGCGC	NA	NA	NA	NA
WP_011463447.1|1223381_1224551_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_011463448.1|1224893_1225358_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_084795443.1|1225521_1226205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041790232.1|1226293_1226494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166485817.1|1227469_1229674_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	34.1	1.2e-75
WP_011463452.1|1229725_1231405_+	alpha-D-glucose phosphate-specific phosphoglucomutase	NA	NA	NA	NA	NA
WP_011463453.1|1231401_1232700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041790234.1|1233576_1234107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085998758.1|1234279_1235155_+	DUF3014 domain-containing protein	NA	NA	NA	NA	NA
WP_011463457.1|1236129_1237380_-	membrane protein	NA	NA	NA	NA	NA
WP_049765613.1|1237406_1237772_-	universal stress protein	NA	A0A2H4J154	uncultured_Caudovirales_phage	43.5	3.7e-11
WP_041791569.1|1238236_1238770_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_011463459.1|1239004_1239493_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_166485675.1|1239982_1240183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011463460.1|1240546_1241869_-	chloride channel protein	NA	NA	NA	NA	NA
WP_011463461.1|1242122_1242971_+	peptidase S11	NA	NA	NA	NA	NA
WP_011463462.1|1243145_1243838_+	protein TolQ	NA	NA	NA	NA	NA
WP_011463463.1|1243851_1244271_+	ExbD/TolR family protein	NA	NA	NA	NA	NA
WP_011463464.1|1244280_1245294_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_011463465.1|1245717_1246029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011463466.1|1246032_1247589_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_011463467.1|1247578_1247968_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_011463468.1|1247960_1248296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011463469.1|1248288_1248603_+	F1F0 ATPase	NA	NA	NA	NA	NA
WP_011463470.1|1248592_1249288_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_011463471.1|1249319_1249601_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_011463472.1|1249604_1250585_+	DUF2934 domain-containing protein	NA	NA	NA	NA	NA
WP_011463473.1|1250587_1252192_+	alternate F1F0 ATPase, F1 subunit alpha	NA	NA	NA	NA	NA
WP_011463474.1|1252188_1253070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011463475.1|1253823_1255347_-|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	46.6	1.9e-117
WP_011463476.1|1255465_1256605_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_011463477.1|1257033_1257369_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_011463478.1|1257377_1257782_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_166485676.1|1258109_1258919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049765614.1|1259043_1259241_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_166485677.1|1259491_1260403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011463480.1|1260389_1262636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011463481.1|1262632_1264090_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_011463482.1|1264086_1265172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011463483.1|1265547_1266147_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_166485678.1|1266768_1266930_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_166485679.1|1266939_1267764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011463486.1|1267760_1268018_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_041790247.1|1268050_1268266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011463487.1|1268493_1268895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011463488.1|1268984_1269389_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011463489.1|1269395_1270343_+	DUF159 family protein	NA	NA	NA	NA	NA
WP_166485818.1|1270373_1271102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_166485680.1|1271070_1272399_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011463492.1|1272567_1272981_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011463493.1|1273687_1274374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011463494.1|1274501_1275542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011463495.1|1275730_1276891_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.3	7.1e-40
WP_011463496.1|1277198_1278314_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_011463497.1|1279281_1279608_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_041790251.1|1279781_1279991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011463499.1|1280529_1281726_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_011463500.1|1281735_1282611_-|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	33.1	1.0e-30
1283756:1283770	attR	TGCGACGGCAAGCGC	NA	NA	NA	NA
>prophage 2
NC_007908	Rhodoferax ferrireducens T118, complete sequence	4712337	2907069	2917108	4712337		Bacillus_virus(16.67%)	9	NA	NA
WP_011464926.1|2907069_2909040_-	type IIA DNA topoisomerase subunit B	NA	G3M9Z3	Bacillus_virus	34.6	3.7e-89
WP_011464927.1|2909115_2909616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011464928.1|2909605_2910760_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_011464929.1|2910822_2911356_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_041792263.1|2911446_2911893_-	dUTP diphosphatase	NA	Q2NP83	Xanthomonas_phage	62.3	1.1e-44
WP_011464931.1|2911882_2913118_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	31.6	5.6e-35
WP_011464932.1|2913230_2914898_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	48.9	4.7e-146
WP_011464933.1|2914899_2915757_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	42.1	2.6e-47
WP_011464934.1|2915824_2917108_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	62.4	2.9e-151
>prophage 3
NC_007908	Rhodoferax ferrireducens T118, complete sequence	4712337	4009643	4018318	4712337		Acinetobacter_phage(50.0%)	8	NA	NA
WP_011465866.1|4009643_4010834_-	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.0	1.2e-13
WP_011465867.1|4011326_4012079_-	uracil-DNA glycosylase	NA	A0A286RUF9	Beluga_whale_alphaherpesvirus	41.4	4.9e-42
WP_011465868.1|4012080_4012875_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	50.2	1.8e-58
WP_011465869.1|4012871_4013924_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	45.5	1.5e-76
WP_041790957.1|4013960_4014227_-	LysE family transporter	NA	NA	NA	NA	NA
WP_011465870.1|4014223_4015291_-	low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
WP_011465871.1|4015392_4016019_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	60.1	6.5e-64
WP_011465872.1|4016044_4018318_-	diguanylate cyclase	NA	G3MA91	Bacillus_virus	35.8	2.4e-23
