assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000014525.1_ASM1452v1	NC_008526	Lactobacillus paracasei ATCC 334, complete sequence	1	250236-250380	1	CRISPRCasFinder	no		csa3,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL	Orphan	GGGGTCCTTATGAGCAGGTTTCTGCGCCTGTTTGCGCGTTTCGAAA	46	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL	NA|351aa|up_8|NC_008526.1_240380_241433_+,NA|115aa|up_7|NC_008526.1_241460_241805_+,NA|111aa|down_4|NC_008526.1_254107_254440_+	NA|287aa|up_9|NC_008526.1_239414_240275_+	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|351aa|up_8|NC_008526.1_240380_241433_+	NA	NA|115aa|up_7|NC_008526.1_241460_241805_+	NA	NA|240aa|up_6|NC_008526.1_241878_242598_+	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters	NA|266aa|up_5|NC_008526.1_242594_243392_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|283aa|up_4|NC_008526.1_243463_244312_-	cd00841, MPP_YfcE, Escherichia coli YfcE and related proteins, metallophosphatase domain	NA|294aa|up_3|NC_008526.1_244308_245190_-	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|600aa|up_2|NC_008526.1_245186_246986_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|365aa|up_1|NC_008526.1_247114_248209_+	PRK09379, PRK09379, LytR family transcriptional regulator	NA|460aa|up_0|NC_008526.1_248359_249739_-	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|229aa|down_0|NC_008526.1_250480_251167_-	cd14667, 3D_containing_proteins, Non-mltA associated 3D domain containing proteins, named for 3 conserved aspartate residues	NA|253aa|down_1|NC_008526.1_251611_252370_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|261aa|down_2|NC_008526.1_252454_253237_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|248aa|down_3|NC_008526.1_253255_253999_+	COG5523, COG5523, Predicted integral membrane protein [Function unknown]	NA|111aa|down_4|NC_008526.1_254107_254440_+	NA	NA|200aa|down_5|NC_008526.1_254725_255325_-	TIGR02227, Inactive_signal_peptidase_IA	NA|313aa|down_6|NC_008526.1_255402_256341_-	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase	NA|516aa|down_7|NC_008526.1_256720_258268_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|247aa|down_8|NC_008526.1_258444_259185_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|105aa|down_9|NC_008526.1_264628_264943_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains
GCF_000014525.1_ASM1452v1	NC_008526	Lactobacillus paracasei ATCC 334, complete sequence	2	356874-358122	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh	csa3,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL	Type I-E	GTTTTCCCCGCACATGCGGGGGTGATCC,GTTTTCCCCGCACATGCGGGGGTGATCC,GTTTTCCCCGCACATGCGGGGGTGATCC	28,28,28	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	20,20,20	20	TypeI-E	csa3,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL	NA,NA|71aa|down_1|NC_008526.1_360362_360575_-	NA|257aa|up_9|NC_008526.1_344735_345505_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|230aa|up_8|NC_008526.1_346100_346789_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas3|923aa|up_7|NC_008526.1_347518_350287_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|570aa|up_6|NC_008526.1_350267_351977_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|201aa|up_5|NC_008526.1_351973_352576_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|362aa|up_4|NC_008526.1_352568_353654_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|237aa|up_3|NC_008526.1_353625_354336_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|216aa|up_2|NC_008526.1_354351_354999_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|316aa|up_1|NC_008526.1_355003_355951_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	DEDDh|302aa|up_0|NC_008526.1_355947_356853_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|466aa|down_0|NC_008526.1_358247_359645_-	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)	NA|71aa|down_1|NC_008526.1_360362_360575_-	NA	NA|415aa|down_2|NC_008526.1_361341_362586_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|293aa|down_3|NC_008526.1_362693_363572_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|133aa|down_4|NC_008526.1_363743_364142_-	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase	NA|124aa|down_5|NC_008526.1_364254_364626_-	TIGR02328, TIGR02328, conserved hypothetical protein	NA|307aa|down_6|NC_008526.1_364682_365603_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|237aa|down_7|NC_008526.1_367309_368020_-	PRK12376, PRK12376, putative translaldolase; Provisional	NA|346aa|down_8|NC_008526.1_368225_369263_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|443aa|down_9|NC_008526.1_369818_371147_+	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases
GCF_000014525.1_ASM1452v1	NC_008526	Lactobacillus paracasei ATCC 334, complete sequence	3	614161-614269	3	CRISPRCasFinder	no		csa3,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL	Orphan	GGTCCTTACACGTAGGTTTCTGGTCTG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL	NA|576aa|up_3|NC_008526.1_609830_611558_-,NA	NA|307aa|up_9|NC_008526.1_603531_604452_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|221aa|up_8|NC_008526.1_604567_605230_+	pfam13731, WxL, WxL domain surface cell wall-binding	NA|120aa|up_7|NC_008526.1_605384_605744_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|234aa|up_6|NC_008526.1_605727_606429_+	pfam13731, WxL, WxL domain surface cell wall-binding	NA|674aa|up_5|NC_008526.1_606590_608612_+	cd01951, lectin_L-type, legume lectins	NA|325aa|up_4|NC_008526.1_608688_609663_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|576aa|up_3|NC_008526.1_609830_611558_-	NA	NA|265aa|up_2|NC_008526.1_611544_612339_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|183aa|up_1|NC_008526.1_612590_613139_-	COG4720, COG4720, Predicted membrane protein [Function unknown]	NA|275aa|up_0|NC_008526.1_613186_614011_-	PRK07105, PRK07105, pyridoxamine kinase; Validated	NA|291aa|down_0|NC_008526.1_614396_615269_-	TIGR00676, 510-methylenetetrahydrofolate_reductase	NA|762aa|down_1|NC_008526.1_615246_617532_-	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|573aa|down_2|NC_008526.1_618543_620262_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|594aa|down_3|NC_008526.1_620266_622048_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|415aa|down_4|NC_008526.1_622209_623454_+	cd17353, MFS_OFA_like, Oxalate:formate antiporter (OFA) and similar proteins of the Major Facilitator Superfamily of transporters	NA|239aa|down_5|NC_008526.1_623740_624457_+	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|549aa|down_6|NC_008526.1_624554_626201_+	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|668aa|down_7|NC_008526.1_626291_628295_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|435aa|down_8|NC_008526.1_628635_629940_+	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|492aa|down_9|NC_008526.1_630161_631637_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter
GCF_000014525.1_ASM1452v1	NC_008526	Lactobacillus paracasei ATCC 334, complete sequence	4	1797688-1797758	4	CRISPRCasFinder	no		csa3,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL	Orphan	AAACCGGCTCAGTTCACGCTCTT	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL	NA|146aa|up_3|NC_008526.1_1791704_1792142_-,NA	NA|202aa|up_9|NC_008526.1_1786197_1786803_-	COG4684, COG4684, Predicted membrane protein [Function unknown]	NA|155aa|up_8|NC_008526.1_1787530_1787995_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|151aa|up_7|NC_008526.1_1787987_1788440_-	PRK04351, PRK04351, SprT family protein	NA|251aa|up_6|NC_008526.1_1788581_1789334_-	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|300aa|up_5|NC_008526.1_1789326_1790226_-	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|332aa|up_4|NC_008526.1_1790222_1791218_-	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|146aa|up_3|NC_008526.1_1791704_1792142_-	NA	NA|887aa|up_2|NC_008526.1_1792278_1794939_-	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|386aa|up_1|NC_008526.1_1795246_1796404_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|339aa|up_0|NC_008526.1_1796486_1797503_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|276aa|down_0|NC_008526.1_1797862_1798690_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|398aa|down_1|NC_008526.1_1798692_1799886_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|488aa|down_2|NC_008526.1_1799889_1801353_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|234aa|down_3|NC_008526.1_1801715_1802417_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|382aa|down_4|NC_008526.1_1802441_1803587_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|266aa|down_5|NC_008526.1_1803693_1804491_-	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	NA|659aa|down_6|NC_008526.1_1804503_1806480_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|276aa|down_7|NC_008526.1_1806808_1807636_-	TIGR03729, acc_ester, putative phosphoesterase	NA|489aa|down_8|NC_008526.1_1807697_1809164_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|773aa|down_9|NC_008526.1_1809638_1811957_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein
GCF_000014525.1_ASM1452v1	NC_008526	Lactobacillus paracasei ATCC 334, complete sequence	5	1809363-1809480	5	CRISPRCasFinder	no		csa3,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL	Orphan	GGTCCTTATGTGTAGGTTTCTGGGCCAGC	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,WYL	NA,NA|125aa|down_1|NC_008526.1_1812382_1812757_-,NA|141aa|down_2|NC_008526.1_1812896_1813319_-,NA|56aa|down_6|NC_008526.1_1819021_1819189_-	NA|339aa|up_9|NC_008526.1_1796486_1797503_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|276aa|up_8|NC_008526.1_1797862_1798690_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|398aa|up_7|NC_008526.1_1798692_1799886_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|488aa|up_6|NC_008526.1_1799889_1801353_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|234aa|up_5|NC_008526.1_1801715_1802417_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|382aa|up_4|NC_008526.1_1802441_1803587_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|266aa|up_3|NC_008526.1_1803693_1804491_-	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	NA|659aa|up_2|NC_008526.1_1804503_1806480_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|276aa|up_1|NC_008526.1_1806808_1807636_-	TIGR03729, acc_ester, putative phosphoesterase	NA|489aa|up_0|NC_008526.1_1807697_1809164_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|773aa|down_0|NC_008526.1_1809638_1811957_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|125aa|down_1|NC_008526.1_1812382_1812757_-	NA	NA|141aa|down_2|NC_008526.1_1812896_1813319_-	NA	NA|379aa|down_3|NC_008526.1_1815406_1816543_+	smart00812, Alpha_L_fucos, Alpha-L-fucosidase	NA|106aa|down_4|NC_008526.1_1816651_1816969_-	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|556aa|down_5|NC_008526.1_1817139_1818807_-	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase	NA|56aa|down_6|NC_008526.1_1819021_1819189_-	NA	NA|704aa|down_7|NC_008526.1_1819224_1821336_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|251aa|down_8|NC_008526.1_1822013_1822766_-	cd01840, SGNH_hydrolase_yrhL_like, yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases	NA|213aa|down_9|NC_008526.1_1823376_1824015_+	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]
