The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_008321	Shewanella sp. MR-4, complete genome	4706287	1283817	1291273	4706287		Staphylococcus_phage(50.0%)	7	NA	NA
WP_011621884.1|1283817_1285485_-	energy-dependent translational throttle protein EttA	NA	A0A1V0SKJ1	Klosneuvirus	27.6	1.1e-38
WP_011621885.1|1285674_1286928_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	53.4	1.6e-101
WP_011073317.1|1287138_1287588_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_011621886.1|1287675_1288821_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	34.6	7.5e-50
WP_011621887.1|1288828_1289485_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	34.0	8.7e-27
WP_011621888.1|1289552_1290656_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.7	5.8e-68
WP_011073313.1|1290796_1291273_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	45.7	1.0e-29
>prophage 2
NC_008321	Shewanella sp. MR-4, complete genome	4706287	1310517	1325661	4706287	tRNA	uncultured_Mediterranean_phage(25.0%)	13	NA	NA
WP_011621904.1|1310517_1311813_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	58.7	4.0e-132
WP_011621905.1|1311913_1312213_+	cell division protein FtsB	NA	NA	NA	NA	NA
WP_011621906.1|1312223_1312973_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_011621907.1|1313024_1313504_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_011621908.1|1313533_1314661_+|tRNA	tRNA pseudouridine(13) synthase TruD	tRNA	NA	NA	NA	NA
WP_011621909.1|1314657_1315407_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.2	1.3e-71
WP_011621910.1|1315403_1316039_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	51.2	9.9e-36
WP_011621911.1|1316136_1317033_+	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV79	Clostridium_phage	31.0	2.6e-10
WP_011621912.1|1317113_1318094_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	32.9	1.4e-33
WP_011621913.1|1318234_1320820_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.1	6.7e-30
WP_011621914.1|1321202_1322276_+	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	61.9	1.4e-111
WP_041408728.1|1322350_1322761_+	regulatory protein RecX	NA	NA	NA	NA	NA
WP_011621916.1|1323036_1325661_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.2	4.2e-80
>prophage 3
NC_008321	Shewanella sp. MR-4, complete genome	4706287	2066659	2076886	4706287		Faustovirus(12.5%)	13	NA	NA
WP_011622512.1|2066659_2067874_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	31.1	6.7e-33
WP_011072277.1|2067911_2068295_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	77.4	1.0e-51
WP_011072278.1|2068309_2068633_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	43.0	4.1e-22
WP_011622513.1|2068648_2069173_+	co-chaperone HscB	NA	NA	NA	NA	NA
WP_011622514.1|2069240_2071103_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	39.1	1.5e-103
WP_011622515.1|2071111_2071447_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_011622516.1|2071602_2072502_+	30S ribosomal protein S6--L-glutamate ligase	NA	I3ULC9	Synechococcus_phage	33.2	3.2e-40
WP_011622517.1|2072570_2072768_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_041408760.1|2072965_2073133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011622518.1|2073353_2073785_+	nucleoside-diphosphate kinase	NA	K7YW26	Megavirus	40.9	2.8e-18
WP_011622519.1|2074098_2074542_+	Hsp20 family protein	NA	A0A2L0V0Y9	Agrobacterium_phage	49.5	1.8e-20
WP_011622520.1|2074673_2075168_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_011622521.1|2075167_2076886_-	acetolactate synthase 3 large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.2	2.8e-56
>prophage 4
NC_008321	Shewanella sp. MR-4, complete genome	4706287	2338641	2349938	4706287	tRNA	uncultured_Caudovirales_phage(28.57%)	13	NA	NA
WP_011622729.1|2338641_2341386_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.7	4.2e-83
WP_011622730.1|2341455_2342076_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_011622731.1|2342084_2343416_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	39.4	1.1e-76
WP_011622732.1|2343408_2343783_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	37.4	3.5e-09
WP_011622733.1|2343801_2345088_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.3	9.8e-99
WP_011622734.1|2345106_2345229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011622735.1|2345296_2345635_-	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA	NA
WP_011622736.1|2345628_2345910_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA	NA
WP_011622737.1|2345909_2346266_-	sulfurtransferase complex subunit TusC	NA	NA	NA	NA	NA
WP_011622738.1|2346280_2346673_-	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	43.3	1.5e-21
WP_011622739.1|2346729_2347389_-	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	43.9	7.3e-34
WP_041408771.1|2347648_2348551_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011622741.1|2348666_2349938_+	Bcr/CflA family multidrug efflux MFS transporter	NA	S4TR35	Salmonella_phage	22.6	1.9e-17
