assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000014805.1_ASM1480v1	NC_008570	Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete sequence	1	1481874-1482253	1	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,RT,DinG	Orphan	CTGCTGGGCGGCGCCAACGTGCTGAC	26	0	0	NA	NA	NA	6	6	Orphan	WYL,csa3,DEDDh,cas3,RT,DinG	NA|110aa|up_1|NC_008570.1_1478959_1479289_+,NA	NA|480aa|up_9|NC_008570.1_1466701_1468141_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|285aa|up_8|NC_008570.1_1468304_1469159_-	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional	NA|323aa|up_7|NC_008570.1_1469508_1470477_+	PRK00292, glk, glucokinase; Provisional	NA|461aa|up_6|NC_008570.1_1470776_1472159_-	PRK10815, PRK10815, two-component system sensor histidine kinase PhoQ	NA|225aa|up_5|NC_008570.1_1472158_1472833_-	PRK10816, PRK10816, two-component system response regulator PhoP	NA|722aa|up_4|NC_008570.1_1472971_1475137_-	TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family	NA|455aa|up_3|NC_008570.1_1475133_1476498_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|696aa|up_2|NC_008570.1_1476494_1478582_-	TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family	NA|110aa|up_1|NC_008570.1_1478959_1479289_+	NA	NA|154aa|up_0|NC_008570.1_1479309_1479771_+	pfam02794, HlyC, RTX toxin acyltransferase family	NA|165aa|down_0|NC_008570.1_1494200_1494695_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|443aa|down_1|NC_008570.1_1494795_1496124_-	PRK14862, rimO, 30S ribosomal protein S12 methylthiotransferase RimO	NA|364aa|down_2|NC_008570.1_1496394_1497486_+	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	NA|259aa|down_3|NC_008570.1_1497714_1498491_+	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module	NA|106aa|down_4|NC_008570.1_1498692_1499010_+	PRK00253, fliE, flagellar hook-basal body protein FliE; Reviewed	NA|571aa|down_5|NC_008570.1_1499067_1500780_+	PRK06007, fliF, flagellar basal body M-ring protein FliF	NA|354aa|down_6|NC_008570.1_1500772_1501834_+	PRK05686, fliG, flagellar motor switch protein G; Validated	NA|269aa|down_7|NC_008570.1_1501898_1502705_+	PRK05687, fliH, flagellar assembly protein FliH	NA|444aa|down_8|NC_008570.1_1502777_1504109_+	PRK08972, fliI, flagellar protein export ATPase FliI	NA|147aa|down_9|NC_008570.1_1504135_1504576_+	PRK05689, fliJ, flagella biosynthesis chaperone FliJ
GCF_000014805.1_ASM1480v1	NC_008570	Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete sequence	2	2322749-2322852	2	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,RT,DinG	Orphan	GTTTAATTGGATTCGAACCAACGAC	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,RT,DinG	NA,NA|60aa|down_8|NC_008570.1_2330122_2330302_-	NA|330aa|up_9|NC_008570.1_2310810_2311800_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|303aa|up_8|NC_008570.1_2311914_2312823_-	PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional	NA|328aa|up_7|NC_008570.1_2312922_2313906_+	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|330aa|up_6|NC_008570.1_2314173_2315163_+	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated	NA|332aa|up_5|NC_008570.1_2315334_2316330_+	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated	NA|287aa|up_4|NC_008570.1_2316471_2317332_+	COG1718, RIO1, Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]	NA|178aa|up_3|NC_008570.1_2317383_2317917_-	COG3981, COG3981, Predicted acetyltransferase [General function prediction only]	NA|413aa|up_2|NC_008570.1_2317916_2319155_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|164aa|up_1|NC_008570.1_2319363_2319855_-	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences	NA|813aa|up_0|NC_008570.1_2320055_2322494_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|460aa|down_0|NC_008570.1_2323360_2324740_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|69aa|down_1|NC_008570.1_2324886_2325093_-	PRK04964, PRK04964, hypothetical protein; Provisional	NA|206aa|down_2|NC_008570.1_2325223_2325841_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|68aa|down_3|NC_008570.1_2325930_2326134_-	pfam14255, Cys_rich_CPXG, Cysteine-rich CPXCG	NA|220aa|down_4|NC_008570.1_2326272_2326932_-	PRK10826, PRK10826, hexitol phosphatase HxpB	NA|393aa|down_5|NC_008570.1_2327058_2328237_-	PRK09288, purT, formate-dependent phosphoribosylglycinamide formyltransferase	NA|297aa|down_6|NC_008570.1_2328322_2329213_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|196aa|down_7|NC_008570.1_2329438_2330026_+	PRK00170, PRK00170, azoreductase; Reviewed	NA|60aa|down_8|NC_008570.1_2330122_2330302_-	NA	NA|63aa|down_9|NC_008570.1_2330465_2330654_-	pfam14056, DUF4250, Domain of unknown function (DUF4250)
GCF_000014805.1_ASM1480v1	NC_008570	Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete sequence	3	2998947-2999035	3	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,RT,DinG	Orphan	CCATCCGGCCTTTCGATCCATTCTGGCG	28	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,RT,DinG	NA,NA|96aa|down_6|NC_008570.1_3009583_3009871_-,NA|186aa|down_9|NC_008570.1_3012618_3013176_-	NA|115aa|up_9|NC_008570.1_2986964_2987309_+	TIGR03342, dsrC_tusE_dsvC, sulfur relay protein, TusE/DsrC/DsvC family	NA|267aa|up_8|NC_008570.1_2987366_2988167_-	PRK11633, PRK11633, cell division protein DedD; Provisional	NA|420aa|up_7|NC_008570.1_2988241_2989501_-	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional	NA|288aa|up_6|NC_008570.1_2989503_2990367_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|270aa|up_5|NC_008570.1_2990486_2991296_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|733aa|up_4|NC_008570.1_2991475_2993674_-	TIGR03505, FimV_core, FimV N-terminal domain	NA|339aa|up_3|NC_008570.1_2993949_2994966_-	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|377aa|up_2|NC_008570.1_2995108_2996239_-	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains	NA|241aa|up_1|NC_008570.1_2996585_2997308_+	PRK10699, PRK10699, phosphatidylglycerophosphatase B; Provisional	NA|277aa|up_0|NC_008570.1_2997379_2998210_-	cd13599, PBP2_lipoprotein_Gna1946, The membrane-associated lipoprotein Gna1946 from Neisseria meningitidis; the type 2 periplasmic binding protein fold	NA|625aa|down_0|NC_008570.1_2999463_3001338_+	cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases	NA|153aa|down_1|NC_008570.1_3001355_3001814_+	pfam18492, ORF_2_N, Open reading frame 2 N-terminal domain	NA|794aa|down_2|NC_008570.1_3002236_3004618_+	PRK15098, PRK15098, beta-glucosidase BglX	NA|326aa|down_3|NC_008570.1_3004712_3005690_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|793aa|down_4|NC_008570.1_3005994_3008373_-	PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated	NA|271aa|down_5|NC_008570.1_3008681_3009494_+	PRK05339, PRK05339, pyruvate, phosphate dikinase/phosphoenolpyruvate synthase regulator	NA|96aa|down_6|NC_008570.1_3009583_3009871_-	NA	NA|459aa|down_7|NC_008570.1_3010233_3011610_+	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|235aa|down_8|NC_008570.1_3011857_3012562_-	PRK11087, PRK11087, oxidative stress defense protein; Provisional	NA|186aa|down_9|NC_008570.1_3012618_3013176_-	NA
GCF_000014805.1_ASM1480v1	NC_008570	Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete sequence	4	3119327-3119418	4	CRISPRCasFinder	no	DinG	WYL,csa3,DEDDh,cas3,RT,DinG	Type IV-A	GGAAATGACGGTCGTTATCCCAGCCA	26	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,RT,DinG	NA,NA|314aa|down_5|NC_008570.1_3125777_3126719_-	NA|664aa|up_9|NC_008570.1_3104846_3106838_+	TIGR03509, OMP_MtrB_PioB, decaheme-associated outer membrane protein, MtrB/PioB family	NA|661aa|up_8|NC_008570.1_3106993_3108976_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|430aa|up_7|NC_008570.1_3109629_3110919_+	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|185aa|up_6|NC_008570.1_3111642_3112197_-	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|617aa|up_5|NC_008570.1_3112500_3114351_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|215aa|up_4|NC_008570.1_3114539_3115184_-	PRK09483, PRK09483, response regulator; Provisional	NA|254aa|up_3|NC_008570.1_3115396_3116158_-	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional	NA|63aa|up_2|NC_008570.1_3116154_3116343_-	PRK11827, PRK11827, protein YcaR	NA|334aa|up_1|NC_008570.1_3116464_3117466_-	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed	NA|590aa|up_0|NC_008570.1_3117465_3119235_-	PRK11176, PRK11176, lipid A ABC transporter ATP-binding protein/permease MsbA	NA|764aa|down_0|NC_008570.1_3119467_3121759_-	PRK11539, PRK11539, ComEC family competence protein; Provisional	NA|173aa|down_1|NC_008570.1_3121696_3122215_+	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062)	NA|165aa|down_2|NC_008570.1_3122208_3122703_+	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062)	NA|503aa|down_3|NC_008570.1_3122825_3124334_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|397aa|down_4|NC_008570.1_3124411_3125602_-	PRK09257, PRK09257, aromatic amino acid transaminase	NA|314aa|down_5|NC_008570.1_3125777_3126719_-	NA	NA|356aa|down_6|NC_008570.1_3126949_3128017_-	COG3203, OmpC, Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]	DinG|691aa|down_7|NC_008570.1_3128398_3130471_+	PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional	NA|220aa|down_8|NC_008570.1_3130644_3131304_+	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057)	NA|299aa|down_9|NC_008570.1_3131388_3132285_+	cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11
GCF_000014805.1_ASM1480v1	NC_008570	Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete sequence	5	3389183-3389272	5	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,RT,DinG	Orphan	CAGATCCCACCCTGCGCCCGTGCTGA	26	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,RT,DinG	NA|50aa|up_4|NC_008570.1_3385163_3385313_+,NA|127aa|up_2|NC_008570.1_3386754_3387135_-,NA|127aa|down_3|NC_008570.1_3395207_3395588_-,NA|301aa|down_6|NC_008570.1_3399583_3400486_+	NA|426aa|up_9|NC_008570.1_3377951_3379229_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|204aa|up_8|NC_008570.1_3379280_3379892_-	PRK09943, PRK09943, HTH-type transcriptional regulator PuuR	NA|488aa|up_7|NC_008570.1_3380202_3381666_+	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|430aa|up_6|NC_008570.1_3381815_3383105_+	PRK07495, PRK07495, 4-aminobutyrate--2-oxoglutarate transaminase	NA|448aa|up_5|NC_008570.1_3383462_3384806_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|50aa|up_4|NC_008570.1_3385163_3385313_+	NA	NA|448aa|up_3|NC_008570.1_3385312_3386656_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|127aa|up_2|NC_008570.1_3386754_3387135_-	NA	NA|385aa|up_1|NC_008570.1_3387383_3388538_+	TIGR01013, Sodium-dependent_phosphate_transport_protein, Phosphate:Na+ Symporter (PNaS) Family	NA|157aa|up_0|NC_008570.1_3388705_3389176_+	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|256aa|down_0|NC_008570.1_3389562_3390330_+	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine	NA|1090aa|down_1|NC_008570.1_3390493_3393763_+	PRK09959, PRK09959, acid-sensing system histidine kinase EvgS	NA|234aa|down_2|NC_008570.1_3394219_3394921_-	PRK13374, PRK13374, DeoD-type purine-nucleoside phosphorylase	NA|127aa|down_3|NC_008570.1_3395207_3395588_-	NA	NA|361aa|down_4|NC_008570.1_3396181_3397264_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|524aa|down_5|NC_008570.1_3397605_3399177_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|301aa|down_6|NC_008570.1_3399583_3400486_+	NA	NA|602aa|down_7|NC_008570.1_3401252_3403058_-	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|425aa|down_8|NC_008570.1_3403481_3404756_-	PRK09225, PRK09225, threonine synthase; Validated	NA|327aa|down_9|NC_008570.1_3404752_3405733_-	PRK01212, PRK01212, homoserine kinase; Provisional
GCF_000014805.1_ASM1480v1	NC_008570	Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete sequence	6	3469876-3469996	6	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,RT,DinG	Orphan	TTGAGGGCAATGCGCGCCCTTCAAGTTCGGCGGGCTTTTTTGTG	44	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,RT,DinG	NA,NA	NA|208aa|up_9|NC_008570.1_3458952_3459576_-	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family	NA|950aa|up_8|NC_008570.1_3459580_3462430_-	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E	NA|68aa|up_7|NC_008570.1_3462504_3462708_-	TIGR02811, formate_dehydrogenase_accessory_protein_FdhX, formate dehydrogenase region TAT target	NA|207aa|up_6|NC_008570.1_3462777_3463398_-	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only]	NA|577aa|up_5|NC_008570.1_3463408_3465139_-	cd10549, MtMvhB_like, Uncharacterized polyferredoxin-like protein	NA|226aa|up_4|NC_008570.1_3465243_3465921_-	pfam11748, DUF3306, Protein of unknown function (DUF3306)	NA|197aa|up_3|NC_008570.1_3465838_3466429_-	pfam11749, DUF3305, Protein of unknown function (DUF3305)	NA|336aa|up_2|NC_008570.1_3466703_3467711_-	pfam13588, HSDR_N_2, Type I restriction enzyme R protein N-terminus (HSDR_N)	NA|286aa|up_1|NC_008570.1_3467968_3468826_+	pfam02634, FdhD-NarQ, FdhD/NarQ family	NA|289aa|up_0|NC_008570.1_3468915_3469782_+	pfam12727, PBP_like, PBP superfamily domain	NA|698aa|down_0|NC_008570.1_3470006_3472100_-	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|452aa|down_1|NC_008570.1_3472131_3473487_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|281aa|down_2|NC_008570.1_3473735_3474578_+	COG2998, TupA, tungsten ABC transporter substrate-binding protein [Coenzyme metabolism]	NA|234aa|down_3|NC_008570.1_3474645_3475347_+	COG4662, TupA, ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism]	NA|232aa|down_4|NC_008570.1_3475462_3476158_+	COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]	NA|213aa|down_5|NC_008570.1_3476129_3476768_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|582aa|down_6|NC_008570.1_3476764_3478510_+	PRK14491, PRK14491, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional	NA|353aa|down_7|NC_008570.1_3478573_3479632_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|458aa|down_8|NC_008570.1_3479702_3481076_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|207aa|down_9|NC_008570.1_3481163_3481784_-	pfam11810, DUF3332, Domain of unknown function (DUF3332)
GCF_000014805.1_ASM1480v1	NC_008570	Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete sequence	7	3776351-3776496	7	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,RT,DinG	Orphan	ATGGCCTGTAAAAAGGTGACCTTTCCGGTCCTAGGAGGTTGAGAGT	46	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,RT,DinG	NA,NA|57aa|down_9|NC_008570.1_3788968_3789139_-	NA|152aa|up_9|NC_008570.1_3765893_3766349_+	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|447aa|up_8|NC_008570.1_3766364_3767705_+	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|93aa|up_7|NC_008570.1_3767817_3768096_+	pfam06196, DUF997, Protein of unknown function (DUF997)	NA|493aa|up_6|NC_008570.1_3768085_3769564_+	PRK09442, panF, sodium/pantothenate symporter	NA|476aa|up_5|NC_008570.1_3769641_3771069_+	TIGR01998, N-acetylglucosamine_and_glucose_PTS, PTS system, N-acetylglucosamine-specific IIBC component	NA|291aa|up_4|NC_008570.1_3771071_3771944_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|339aa|up_3|NC_008570.1_3772044_3773061_+	cd08252, AL_MDR, Arginate lyase and other MDR family members	NA|293aa|up_2|NC_008570.1_3773576_3774455_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|326aa|up_1|NC_008570.1_3774650_3775628_+	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases	NA|188aa|up_0|NC_008570.1_3775701_3776265_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|183aa|down_0|NC_008570.1_3776813_3777362_-	PRK10828, PRK10828, putative oxidoreductase; Provisional	NA|672aa|down_1|NC_008570.1_3777468_3779484_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|615aa|down_2|NC_008570.1_3779794_3781639_+	PRK10949, PRK10949, signal peptide peptidase SppA	NA|186aa|down_3|NC_008570.1_3781706_3782264_-	cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|267aa|down_4|NC_008570.1_3782270_3783071_-	pfam11207, DUF2989, Protein of unknown function (DUF2989)	NA|477aa|down_5|NC_008570.1_3783268_3784699_+	PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase; Reviewed	NA|98aa|down_6|NC_008570.1_3784739_3785033_+	COG3139, COG3139, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_7|NC_008570.1_3785129_3786788_-	COG2425, COG2425, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]	NA|705aa|down_8|NC_008570.1_3786796_3788911_-	PRK13531, PRK13531, regulatory ATPase RavA; Provisional	NA|57aa|down_9|NC_008570.1_3788968_3789139_-	NA
GCF_000014805.1_ASM1480v1	NC_008570	Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete sequence	8	4070840-4070945	8	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,RT,DinG	Orphan	ACAGATTTCATTCGGATCAAACCTTAGCGTTTAG	34	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,RT,DinG	NA,NA	NA|148aa|up_9|NC_008570.1_4053806_4054250_+	cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|391aa|up_8|NC_008570.1_4054455_4055628_+	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family	NA|131aa|up_7|NC_008570.1_4055708_4056101_-	pfam01641, SelR, SelR domain	NA|714aa|up_6|NC_008570.1_4056157_4058299_-	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX	NA|726aa|up_5|NC_008570.1_4058298_4060476_-	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|730aa|up_4|NC_008570.1_4060558_4062748_-	PRK11052, malQ, 4-alpha-glucanotransferase; Provisional	NA|332aa|up_3|NC_008570.1_4063094_4064090_+	PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase	NA|289aa|up_2|NC_008570.1_4064205_4065072_+	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like	NA|358aa|up_1|NC_008570.1_4065141_4066215_-	PRK09375, PRK09375, quinolinate synthase NadA	NA|702aa|up_0|NC_008570.1_4066355_4068461_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|175aa|down_0|NC_008570.1_4071008_4071533_-	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal	NA|442aa|down_1|NC_008570.1_4071582_4072908_-	PRK04792, tolB, Tol-Pal system protein TolB	NA|388aa|down_2|NC_008570.1_4073002_4074166_-	pfam06519, TolA, TolA C-terminal	NA|149aa|down_3|NC_008570.1_4074171_4074618_-	TIGR02801, Protein_TolR, TolR protein	NA|230aa|down_4|NC_008570.1_4074617_4075307_-	TIGR02796, Protein_TolQ, TolQ protein	NA|136aa|down_5|NC_008570.1_4075296_4075704_-	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase	NA|82aa|down_6|NC_008570.1_4075809_4076055_-	pfam09600, Cyd_oper_YbgE, Cyd operon protein YbgE (Cyd_oper_YbgE)	NA|39aa|down_7|NC_008570.1_4076107_4076224_-	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|379aa|down_8|NC_008570.1_4076238_4077375_-	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|519aa|down_9|NC_008570.1_4077387_4078944_-	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA
GCF_000014805.1_ASM1480v1	NC_008570	Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete sequence	9	4130471-4130615	9	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,RT,DinG	Orphan	GCTTGCGGCTCAGGATATAGAAGGAGATACCGCCGAACAGCAG	43	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,RT,DinG	NA,NA	NA|444aa|up_9|NC_008570.1_4119887_4121219_-	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|258aa|up_8|NC_008570.1_4121328_4122102_-	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|57aa|up_7|NC_008570.1_4122493_4122664_-	TIGR03510, conserved_hypothetical_protein, XapX domain	NA|425aa|up_6|NC_008570.1_4122787_4124062_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|263aa|up_5|NC_008570.1_4124275_4125064_-	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]	NA|206aa|up_4|NC_008570.1_4125104_4125722_+	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|61aa|up_3|NC_008570.1_4125690_4125873_-	pfam17320, DUF5363, Family of unknown function (DUF5363)	NA|451aa|up_2|NC_008570.1_4126087_4127440_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|479aa|up_1|NC_008570.1_4127774_4129211_-	PRK10666, PRK10666, ammonium transporter AmtB	NA|174aa|up_0|NC_008570.1_4129891_4130413_+	pfam06271, RDD, RDD family	NA|371aa|down_0|NC_008570.1_4131779_4132892_-	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF	NA|503aa|down_1|NC_008570.1_4133064_4134573_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|152aa|down_2|NC_008570.1_4134735_4135191_+	pfam04364, DNA_pol3_chi, DNA polymerase III chi subunit, HolC	NA|951aa|down_3|NC_008570.1_4135256_4138109_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|431aa|down_4|NC_008570.1_4138295_4139588_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|222aa|down_5|NC_008570.1_4139606_4140272_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|276aa|down_6|NC_008570.1_4140411_4141239_+	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional	NA|63aa|down_7|NC_008570.1_4142482_4142671_-	PRK01712, PRK01712, carbon storage regulator CsrA	NA|416aa|down_8|NC_008570.1_4142764_4144012_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|875aa|down_9|NC_008570.1_4144028_4146653_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed
GCF_000014805.1_ASM1480v1	NC_008570	Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete sequence	10	4168582-4168730	10	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,RT,DinG	Orphan	CAGACACAAAAAAGGCCGCGGTACGCAGCGGCCAAGGAAGGATCCG	46	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,RT,DinG	NA,NA|127aa|down_4|NC_008570.1_4170988_4171369_+	NA|314aa|up_9|NC_008570.1_4159663_4160605_+	cd13568, PBP2_TAXI_TRAP_like_3, Substrate binding domain of putative TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|225aa|up_8|NC_008570.1_4160599_4161274_-	COG3672, COG3672, Predicted transglutaminase-like cysteine proteinase [General    function prediction only]	NA|305aa|up_7|NC_008570.1_4161359_4162274_-	PRK09545, znuA, zinc ABC transporter substrate-binding protein ZnuA	NA|255aa|up_6|NC_008570.1_4162368_4163133_+	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed	NA|260aa|up_5|NC_008570.1_4163154_4163934_+	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB	NA|306aa|up_4|NC_008570.1_4164024_4164942_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|286aa|up_3|NC_008570.1_4165033_4165891_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|194aa|up_2|NC_008570.1_4165901_4166483_-	cd10033, UDG_like, uncharacterized family of the uracil-DNA glycosylase superfamily	NA|301aa|up_1|NC_008570.1_4166585_4167488_+	COG2962, RarD, Predicted permeases [General function prediction only]	NA|245aa|up_0|NC_008570.1_4167469_4168204_-	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3	NA|73aa|down_0|NC_008570.1_4168743_4168962_-	PRK09459, pspG, envelope stress response protein PspG	NA|69aa|down_1|NC_008570.1_4169004_4169211_-	pfam04024, PspC, PspC domain	NA|221aa|down_2|NC_008570.1_4169213_4169876_-	TIGR02977, phage_shock_protein_A, phage shock protein A	NA|243aa|down_3|NC_008570.1_4170083_4170812_-	PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional	NA|127aa|down_4|NC_008570.1_4170988_4171369_+	NA	NA|681aa|down_5|NC_008570.1_4171424_4173467_+	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]	NA|252aa|down_6|NC_008570.1_4173477_4174233_+	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|51aa|down_7|NC_008570.1_4174244_4174397_+	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|176aa|down_8|NC_008570.1_4174400_4174928_+	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif	NA|95aa|down_9|NC_008570.1_4175207_4175492_+	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
GCF_000014805.1_ASM1480v1	NC_008570	Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete sequence	11	4532282-4532360	11	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,RT,DinG	Orphan	CTACGCATTCTTCAGTACAGATTTGT	26	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,RT,DinG	NA|181aa|up_6|NC_008570.1_4526594_4527137_+,NA|65aa|up_5|NC_008570.1_4527236_4527431_+,NA|59aa|down_2|NC_008570.1_4535318_4535495_+,NA|123aa|down_4|NC_008570.1_4536244_4536613_+	NA|171aa|up_9|NC_008570.1_4521925_4522438_+	PRK10477, PRK10477, outer membrane lipoprotein Blc; Provisional	NA|631aa|up_8|NC_008570.1_4522503_4524396_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|457aa|up_7|NC_008570.1_4524646_4526017_-	pfam12588, PSDC, Phophatidylserine decarboxylase	NA|181aa|up_6|NC_008570.1_4526594_4527137_+	NA	NA|65aa|up_5|NC_008570.1_4527236_4527431_+	NA	NA|307aa|up_4|NC_008570.1_4527411_4528332_+	COG0540, PyrB, Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]	NA|155aa|up_3|NC_008570.1_4528348_4528813_+	PRK00893, PRK00893, aspartate carbamoyltransferase regulatory subunit; Reviewed	NA|164aa|up_2|NC_008570.1_4529030_4529522_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|468aa|up_1|NC_008570.1_4529700_4531104_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|335aa|up_0|NC_008570.1_4531227_4532232_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|309aa|down_0|NC_008570.1_4532362_4533289_-	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|407aa|down_1|NC_008570.1_4533352_4534573_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|59aa|down_2|NC_008570.1_4535318_4535495_+	NA	NA|216aa|down_3|NC_008570.1_4535595_4536243_+	PHA02518, PHA02518, ParA-like protein; Provisional	NA|123aa|down_4|NC_008570.1_4536244_4536613_+	NA	NA|578aa|down_5|NC_008570.1_4537214_4538948_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|337aa|down_6|NC_008570.1_4538999_4540010_-	PRK09478, mglC, galactose/methyl galactoside ABC transporter permease MglC	NA|507aa|down_7|NC_008570.1_4540026_4541547_-	PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional	NA|329aa|down_8|NC_008570.1_4541601_4542588_-	PRK15395, PRK15395, galactose/glucose ABC transporter substrate-binding protein MglB	NA|1026aa|down_9|NC_008570.1_4542822_4545900_-	PRK09525, lacZ, beta-galactosidase
GCF_000014805.1_ASM1480v1	NC_008570	Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete sequence	12	4639997-4640139	12	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,RT,DinG	Orphan	CGCTTCGCCCTGTTCGATCAGTTCCCCTGGACTCACCATATGGAAGCCGG	50	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,RT,DinG	NA|87aa|up_7|NC_008570.1_4632118_4632379_+,NA|61aa|down_2|NC_008570.1_4642518_4642701_+,NA|375aa|down_7|NC_008570.1_4648466_4649591_-	NA|349aa|up_9|NC_008570.1_4629787_4630834_+	TIGR03586, PseI, pseudaminic acid synthase	NA|432aa|up_8|NC_008570.1_4630826_4632122_+	pfam01973, MAF_flag10, Protein of unknown function DUF115	NA|87aa|up_7|NC_008570.1_4632118_4632379_+	NA	NA|454aa|up_6|NC_008570.1_4632496_4633858_-	cd05644, M28_like, M28 Zn-peptidase-like, uncharacterized subfamily	NA|135aa|up_5|NC_008570.1_4633854_4634259_-	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE)	NA|255aa|up_4|NC_008570.1_4634248_4635013_-	pfam02522, Antibiotic_NAT, Aminoglycoside 3-N-acetyltransferase	NA|75aa|up_3|NC_008570.1_4635009_4635234_-	COG0236, AcpP, Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|561aa|up_2|NC_008570.1_4635226_4636909_-	COG3882, FkbH, Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|178aa|up_1|NC_008570.1_4637006_4637540_-	TIGR00636, PduO_Nterm, ATP:cob(I)alamin adenosyltransferase	NA|381aa|up_0|NC_008570.1_4637627_4638770_-	pfam18433, DUF5610, Domain of unknown function (DUF5610)	NA|237aa|down_0|NC_008570.1_4640311_4641022_+	PRK10701, PRK10701, DNA-binding transcriptional regulator RstA; Provisional	NA|442aa|down_1|NC_008570.1_4641138_4642464_+	PRK10604, PRK10604, sensor protein RstB; Provisional	NA|61aa|down_2|NC_008570.1_4642518_4642701_+	NA	NA|419aa|down_3|NC_008570.1_4642777_4644034_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|478aa|down_4|NC_008570.1_4644215_4645649_-	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	NA|72aa|down_5|NC_008570.1_4645816_4646032_-	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed	NA|736aa|down_6|NC_008570.1_4646179_4648387_+	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|375aa|down_7|NC_008570.1_4648466_4649591_-	NA	NA|369aa|down_8|NC_008570.1_4649743_4650850_-	PRK10808, PRK10808, outer membrane protein A; Reviewed	NA|507aa|down_9|NC_008570.1_4651097_4652618_-	PRK09224, PRK09224, threonine ammonia-lyase IlvA
