The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_009485	Bradyrhizobium sp. BTAi1, complete sequence	8264687	1291069	1326414	8264687	transposase,holin,integrase	Catovirus(16.67%)	29	1294917:1294962	1326587:1326632
WP_012041500.1|1291069_1292674_-|holin	choline dehydrogenase	holin	A0A1V0S9J5	Catovirus	29.6	7.2e-51
WP_012041501.1|1292853_1294287_-	coniferyl aldehyde dehydrogenase	NA	NA	NA	NA	NA
1294917:1294962	attL	CTCATAACCTGAAGGTCATAGGTTCAAATCCTATCCCCGCAACCAA	NA	NA	NA	NA
WP_012041502.1|1295195_1298243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041750364.1|1298355_1299264_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA	NA
WP_012041504.1|1299278_1300175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012041505.1|1300260_1300488_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012041506.1|1300518_1300842_-	DUF3768 domain-containing protein	NA	NA	NA	NA	NA
WP_148221399.1|1300951_1301443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011931033.1|1301485_1302088_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA	NA
WP_011931032.1|1302084_1303647_-|transposase	IS66-like element ISBrsp6 family transposase	transposase	NA	NA	NA	NA
WP_011931031.1|1303698_1304052_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_011931030.1|1304045_1304468_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_012041510.1|1304509_1304692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041751265.1|1304904_1305291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041751266.1|1305965_1306541_-|integrase	site-specific integrase	integrase	A0A1W6DWU1	Sphingobium_phage	41.7	2.3e-31
WP_148221400.1|1307476_1308787_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012041517.1|1308875_1309751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_168167872.1|1309933_1310260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148221383.1|1310303_1311441_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	34.8	3.1e-32
WP_012041520.1|1311617_1315013_-	DEAD/DEAH box helicase family protein	NA	A0A0H5ARP5	Pseudomonas_phage	25.5	9.1e-11
WP_012041521.1|1315009_1315867_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_041750367.1|1316006_1317290_+	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
WP_012041523.1|1317366_1319199_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_041750368.1|1319195_1320530_+	ATP-binding domain-containing protein	NA	NA	NA	NA	NA
WP_148221585.1|1321009_1321303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012041526.1|1321437_1323687_-	phage / plasmid primase P4	NA	Q9T0Y1	Lactobacillus_phage	37.4	2.7e-80
WP_012041527.1|1323819_1324104_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012041528.1|1324265_1325108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012041529.1|1325109_1326414_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A221SAN4	Ralstonia_phage	32.8	5.7e-38
1326587:1326632	attR	CTCATAACCTGAAGGTCATAGGTTCAAATCCTATCCCCGCAACCAA	NA	NA	NA	NA
>prophage 2
NC_009485	Bradyrhizobium sp. BTAi1, complete sequence	8264687	3163550	3172555	8264687	protease	uncultured_Mediterranean_phage(33.33%)	8	NA	NA
WP_012043169.1|3163550_3165161_+	DUF853 family protein	NA	A0A248XCZ8	Klebsiella_phage	41.5	9.1e-78
WP_012043170.1|3165306_3166710_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_012043171.1|3166728_3167946_-	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	36.0	1.6e-18
WP_012043172.1|3168095_3169193_-|protease	trypsin-like serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	26.4	2.3e-24
WP_012043173.1|3169415_3169730_+	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	55.4	1.2e-21
WP_012043174.1|3169770_3171393_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	60.7	1.3e-177
WP_012043175.1|3171656_3171887_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012043176.1|3172105_3172555_+	Hsp20 family protein	NA	A0A1B1IW69	uncultured_Mediterranean_phage	42.0	2.9e-26
>prophage 3
NC_009485	Bradyrhizobium sp. BTAi1, complete sequence	8264687	4621964	4631618	8264687	tRNA	uncultured_Mediterranean_phage(88.89%)	11	NA	NA
WP_012044445.1|4621964_4623419_-	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	NA	Q8SBN9	Clostridium_phage	40.9	7.3e-18
WP_041751544.1|4623526_4624144_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	48.1	1.6e-27
WP_012044447.1|4624451_4624847_+	response regulator	NA	NA	NA	NA	NA
WP_012044448.1|4624838_4625606_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	38.3	2.8e-37
WP_012044449.1|4625701_4626061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012044450.1|4626164_4627493_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.5	4.5e-99
WP_012044451.1|4627624_4628440_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	46.4	1.5e-52
WP_012044452.1|4628436_4628979_-	twin-arginine translocase subunit TatB	NA	A0A1B1IVT0	uncultured_Mediterranean_phage	48.9	5.9e-05
WP_006614346.1|4629088_4629322_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	55.4	4.2e-08
WP_012044453.1|4629601_4630759_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	49.7	5.2e-43
WP_012044454.1|4630778_4631618_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	35.5	3.1e-29
>prophage 4
NC_009485	Bradyrhizobium sp. BTAi1, complete sequence	8264687	5176345	5215041	8264687	integrase,transposase	Shigella_phage(25.0%)	35	5176104:5176145	5191946:5191987
5176104:5176145	attL	TTGCGCTCGTAGCTCAGCTGGATAGAGCATCGGATTTCGATT	NA	NA	NA	NA
WP_012044936.1|5176345_5177650_+|integrase	site-specific integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	30.6	1.7e-13
WP_148221488.1|5177646_5178123_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012044937.1|5178307_5178556_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012044938.1|5178742_5179051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_083780693.1|5179212_5179389_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012044939.1|5180071_5182282_+	hypothetical protein	NA	A0A1W6JQ82	Corynebacterium_phage	41.8	7.9e-40
WP_012044940.1|5183068_5183713_+	recombinase family protein	NA	A0A0F7L6S1	uncultured_marine_virus	38.5	5.2e-24
WP_012044941.1|5183871_5184723_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_012044942.1|5184757_5185657_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_012044943.1|5185789_5186200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012044944.1|5186199_5187648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_168167913.1|5187667_5187823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012044945.1|5187819_5188113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148221489.1|5188159_5188933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041750836.1|5188916_5189138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148221490.1|5189236_5191456_-	DUF2254 domain-containing protein	NA	NA	NA	NA	NA
WP_041751575.1|5193511_5193718_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
5191946:5191987	attR	TTGCGCTCGTAGCTCAGCTGGATAGAGCATCGGATTTCGATT	NA	NA	NA	NA
WP_012044951.1|5194267_5194981_-	hypothetical protein	NA	A0A291AUS5	Sinorhizobium_phage	43.3	5.0e-12
WP_012044953.1|5195404_5195650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041751576.1|5195646_5196114_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012044955.1|5196353_5197262_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_012044956.1|5197671_5198568_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_041750838.1|5198856_5199207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012044958.1|5199299_5202710_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_012044959.1|5202706_5204530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012044960.1|5204534_5205683_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA	NA
WP_012044961.1|5205960_5207334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049795396.1|5208261_5208543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049795508.1|5209043_5209394_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_148221492.1|5209479_5210649_-	GRRM system radical SAM/SPASM domain protein	NA	NA	NA	NA	NA
WP_012044965.1|5210629_5210929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_168167914.1|5211654_5212461_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	35.3	1.6e-30
WP_083780697.1|5212580_5212976_+|transposase	transposase	transposase	Q76S41	Shigella_phage	46.4	5.4e-08
WP_041750840.1|5212972_5213320_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	56.6	5.2e-31
WP_012044968.1|5213391_5215041_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	42.5	2.1e-106
>prophage 5
NC_009485	Bradyrhizobium sp. BTAi1, complete sequence	8264687	5873581	5879838	8264687		Yellowstone_lake_phycodnavirus(50.0%)	7	NA	NA
WP_012045550.1|5873581_5874304_+	nucleotidyltransferase family protein	NA	A0A127AW70	Bacillus_phage	23.1	3.8e-07
WP_012045551.1|5874412_5875351_+	SDR family oxidoreductase	NA	E3T4Y8	Cafeteria_roenbergensis_virus	28.8	3.7e-07
WP_012045552.1|5875347_5875956_+	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_012045553.1|5875968_5876967_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A0N7KVW3	Yellowstone_lake_phycodnavirus	35.8	1.6e-35
WP_012045554.1|5877023_5877872_+	transketolase	NA	A0A0P0YMZ3	Yellowstone_lake_phycodnavirus	36.1	7.8e-12
WP_012045555.1|5877868_5878792_+	transketolase	NA	A0A0P0YNE1	Yellowstone_lake_phycodnavirus	31.0	2.0e-16
WP_012045556.1|5878800_5879838_+	zinc-binding dehydrogenase	NA	E3SJ82	Synechococcus_phage	37.4	4.1e-55
>prophage 6
NC_009485	Bradyrhizobium sp. BTAi1, complete sequence	8264687	6862117	6879996	8264687	tail,plate,portal,terminase,protease	Rhizobium_phage(33.33%)	18	NA	NA
WP_012046426.1|6862117_6863236_-|plate	baseplate J/gp47 family protein	plate	M1PJA4	Vibrio_phage	27.4	1.5e-10
WP_012046427.1|6863235_6863793_-	phage protein	NA	A0A068CDD6	Rhizobium_phage	36.5	1.6e-18
WP_012046428.1|6863794_6864313_-	bacteriophage protein, gp45-like protein	NA	NA	NA	NA	NA
WP_012046429.1|6864315_6865419_-|tail	phage tail protein	tail	A0A068CH59	Rhizobium_phage	32.1	9.7e-39
WP_012046430.1|6865422_6866691_-	DNA circularization protein	NA	NA	NA	NA	NA
WP_012046431.1|6866834_6868841_-	hypothetical protein	NA	A0A1S5NRM8	Burkholderia_phage	25.9	2.4e-19
WP_012046432.1|6869056_6869356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012046433.1|6869424_6869814_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012046434.1|6869889_6871389_-|tail	Mu-like prophage FluMu tail sheath protein	tail	A0A068CC80	Rhizobium_phage	35.5	4.7e-68
WP_012046435.1|6871468_6871798_-	DUF2635 domain-containing protein	NA	NA	NA	NA	NA
WP_148221533.1|6871798_6872320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148221534.1|6872568_6872910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012046438.1|6872981_6873326_-	DUF2190 family protein	NA	NA	NA	NA	NA
WP_012046439.1|6873416_6875471_-|protease	Clp protease ClpP	protease	A0A1W6JT88	Pseudomonas_phage	41.7	3.1e-107
WP_012046440.1|6875442_6876981_-|portal	phage portal protein	portal	D4HTU3	Vibrio_phage	32.2	4.5e-58
WP_012046441.1|6876980_6877241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012046442.1|6877271_6877925_-	hypothetical protein	NA	A0A1X9SH03	Bradyrhizobium_phage	41.7	2.4e-37
WP_012046443.1|6877962_6879996_-|terminase	terminase	terminase	A0A0A8ILA6	Aurantimonas_phage	47.1	5.6e-157
>prophage 1
NC_009475	Bradyrhizobium sp. BTAi1 plasmid pBBta01, complete sequence	228826	105880	162525	228826	transposase	Leptospira_phage(50.0%)	53	NA	NA
WP_148221383.1|105880_107019_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	34.8	3.1e-32
WP_168167962.1|107228_107390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011931000.1|107421_107835_-	DUF1622 domain-containing protein	NA	NA	NA	NA	NA
WP_085972756.1|107891_109154_-	OpgC domain-containing protein	NA	NA	NA	NA	NA
WP_011931002.1|109131_109806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148221670.1|110381_110708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_168167961.1|110772_110940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011931004.1|111054_112419_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_011931005.1|112646_113537_+	TIGR00730 family Rossman fold protein	NA	F4YCQ1	Synechococcus_phage	31.9	9.0e-11
WP_041751817.1|113928_114135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011931007.1|115402_116686_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
WP_011931008.1|117030_118578_-	glycogen synthase GlgA	NA	NA	NA	NA	NA
WP_148221682.1|119195_119789_+	periplasmic heavy metal sensor	NA	NA	NA	NA	NA
WP_041751818.1|119941_120151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_168167963.1|120179_120347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011931012.1|121934_122186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011931013.1|122369_122906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_083780819.1|123141_123603_-	four-helix bundle copper-binding protein	NA	NA	NA	NA	NA
WP_148221671.1|123754_125239_+	MFS transporter	NA	NA	NA	NA	NA
WP_011931017.1|125507_125906_-	copper-binding protein	NA	NA	NA	NA	NA
WP_049795539.1|126251_126620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011931019.1|126639_127680_-	hydrogenase expression/formation protein HypE	NA	NA	NA	NA	NA
WP_041751865.1|127676_129917_-	carbamoyltransferase HypF	NA	NA	NA	NA	NA
WP_011931021.1|129945_130458_-	HyaD/HybD family hydrogenase maturation endopeptidase	NA	NA	NA	NA	NA
WP_011931022.1|130454_131594_-	hydrogenase formation protein HypD	NA	NA	NA	NA	NA
WP_011931023.1|131590_132430_-	hydrogenase nickel incorporation protein HypB	NA	NA	NA	NA	NA
WP_011931024.1|132422_132860_-	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA	NA
WP_011931025.1|132852_133092_-	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
WP_011931026.1|133121_134033_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083780820.1|134029_135829_-	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA	NA
WP_011931028.1|135812_136790_-	hydrogenase small subunit	NA	NA	NA	NA	NA
WP_148221672.1|136872_137193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011931030.1|138029_138452_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011931031.1|138445_138799_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_011931032.1|138850_140413_+|transposase	IS66-like element ISBrsp6 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	38.0	3.6e-87
WP_011931033.1|140409_141012_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA	NA
WP_011931035.1|141984_142767_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_011931036.1|142776_144819_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA	NA
WP_011931038.1|145080_145773_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011931039.1|145890_146667_-	cytochrome c3 family protein	NA	NA	NA	NA	NA
WP_011931040.1|146663_147368_-	iron reductase	NA	NA	NA	NA	NA
WP_041751869.1|147369_149085_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	A0A0E3FC86	Synechococcus_phage	36.1	4.7e-08
WP_011931042.1|149557_150244_-	Spy/CpxP family protein refolding chaperone	NA	NA	NA	NA	NA
WP_011931043.1|150474_152229_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_041751824.1|152614_152881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011931045.1|153528_155700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011931047.1|156101_156878_-	class III cytochrome C family protein	NA	NA	NA	NA	NA
WP_011931048.1|156874_157618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148221673.1|157620_158256_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_148221383.1|158236_159374_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	34.8	3.1e-32
WP_011931051.1|159750_160011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011931052.1|160133_161249_-	OpgC domain-containing protein	NA	NA	NA	NA	NA
WP_148221383.1|161387_162525_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	34.8	3.1e-32
