assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000016005.1_ASM1600v1	NC_009077	Mycobacterium sp. JLS, complete genome	1	2523548-2523632	1	CRISPRCasFinder	no		WYL,cas3,csa3,casR,cas4,DEDDh,DinG	Orphan	CCGTCTGACGACGATGCGGGGCGAG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,casR,cas4,DEDDh,DinG	NA|167aa|up_7|NC_009077.1_2513352_2513853_+,NA|106aa|up_3|NC_009077.1_2519632_2519950_+,NA	NA|317aa|up_9|NC_009077.1_2511113_2512064_+	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|432aa|up_8|NC_009077.1_2512060_2513356_+	PRK09357, pyrC, dihydroorotase; Validated	NA|167aa|up_7|NC_009077.1_2513352_2513853_+	NA	NA|388aa|up_6|NC_009077.1_2513849_2515013_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1113aa|up_5|NC_009077.1_2515012_2518351_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|273aa|up_4|NC_009077.1_2518353_2519172_+	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed	NA|106aa|up_3|NC_009077.1_2519632_2519950_+	NA	NA|199aa|up_2|NC_009077.1_2519960_2520557_+	PRK00300, gmk, guanylate kinase; Provisional	NA|108aa|up_1|NC_009077.1_2520615_2520939_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|417aa|up_0|NC_009077.1_2520954_2522205_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|192aa|down_0|NC_009077.1_2525162_2525738_-	TIGR03968, transcriptional_regulator_TetR_family, mycofactocin system transcriptional regulator	NA|297aa|down_1|NC_009077.1_2525813_2526704_+	cd05262, SDR_a7, atypical (a) SDRs, subgroup 7	NA|301aa|down_2|NC_009077.1_2526685_2527588_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|253aa|down_3|NC_009077.1_2527610_2528369_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|417aa|down_4|NC_009077.1_2528480_2529731_+	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion]	NA|666aa|down_5|NC_009077.1_2529806_2531804_+	PRK14873, PRK14873, primosomal protein N'	NA|607aa|down_6|NC_009077.1_2531831_2533652_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|179aa|down_7|NC_009077.1_2533645_2534182_+	pfam04011, LemA, LemA family	NA|309aa|down_8|NC_009077.1_2534201_2535128_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|456aa|down_9|NC_009077.1_2535124_2536492_+	PRK14902, PRK14902, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB
GCF_000016005.1_ASM1600v1	NC_009077	Mycobacterium sp. JLS, complete genome	2	4951810-4951896	2	CRISPRCasFinder	no	csa3	WYL,cas3,csa3,casR,cas4,DEDDh,DinG	Type I-A	GCATCATCCGCCGTCACCCGACCGGCG	27	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,casR,cas4,DEDDh,DinG	NA|473aa|up_7|NC_009077.1_4941961_4943380_-,NA	NA|528aa|up_9|NC_009077.1_4939732_4941316_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|210aa|up_8|NC_009077.1_4941312_4941942_-	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|473aa|up_7|NC_009077.1_4941961_4943380_-	NA	NA|296aa|up_6|NC_009077.1_4943437_4944325_-	pfam17270, DUF5336, Family of unknown function (DUF5336)	NA|386aa|up_5|NC_009077.1_4944470_4945628_-	TIGR04021, LLM_DMSO2_sfnG, dimethyl sulfone monooxygenase SfnG	NA|283aa|up_4|NC_009077.1_4945728_4946577_+	TIGR03619, F420_Rv2161c, probable F420-dependent oxidoreductase, Rv2161c family	NA|510aa|up_3|NC_009077.1_4946648_4948178_-	PRK08257, PRK08257, acetyl-CoA acetyltransferase; Validated	NA|301aa|up_2|NC_009077.1_4948323_4949226_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|388aa|up_1|NC_009077.1_4949236_4950400_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|361aa|up_0|NC_009077.1_4950662_4951745_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|785aa|down_0|NC_009077.1_4952386_4954741_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|99aa|down_1|NC_009077.1_4954939_4955236_+	PRK07857, PRK07857, chorismate mutase	NA|681aa|down_2|NC_009077.1_4955288_4957331_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|483aa|down_3|NC_009077.1_4957490_4958939_-	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|555aa|down_4|NC_009077.1_4958990_4960655_+	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|250aa|down_5|NC_009077.1_4960704_4961454_-	PRK08251, PRK08251, SDR family oxidoreductase	NA|288aa|down_6|NC_009077.1_4961527_4962391_-	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]	NA|130aa|down_7|NC_009077.1_4962407_4962797_-	COG1950, COG1950, Predicted membrane protein [Function unknown]	NA|255aa|down_8|NC_009077.1_4962815_4963580_-	PRK08284, PRK08284, precorrin 6A synthase; Provisional	NA|351aa|down_9|NC_009077.1_4963607_4964660_-	pfam03631, Virul_fac_BrkB, Virulence factor BrkB
GCF_000016005.1_ASM1600v1	NC_009077	Mycobacterium sp. JLS, complete genome	3	5881863-5881963	3	CRISPRCasFinder	no	csa3	WYL,cas3,csa3,casR,cas4,DEDDh,DinG	Type I-A	GGCCACGACGGCGGGGCCGACGGCACCGC	29	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,casR,cas4,DEDDh,DinG	NA,NA|117aa|down_7|NC_009077.1_5889436_5889787_+,NA|260aa|down_8|NC_009077.1_5889805_5890585_+	NA|237aa|up_9|NC_009077.1_5870879_5871590_-	smart01012, ANTAR, ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins	NA|236aa|up_8|NC_009077.1_5871605_5872313_-	smart01012, ANTAR, ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins	NA|709aa|up_7|NC_009077.1_5872747_5874874_-	pfam02538, Hydantoinase_B, Hydantoinase B/oxoprolinase	NA|707aa|up_6|NC_009077.1_5874876_5876997_-	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|196aa|up_5|NC_009077.1_5877168_5877756_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|426aa|up_4|NC_009077.1_5877721_5878999_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|164aa|up_3|NC_009077.1_5879088_5879580_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|323aa|up_2|NC_009077.1_5879583_5880552_-	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs	NA|152aa|up_1|NC_009077.1_5880614_5881070_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|173aa|up_0|NC_009077.1_5881163_5881682_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|405aa|down_0|NC_009077.1_5881976_5883191_+	pfam08007, Cupin_4, Cupin superfamily protein	NA|296aa|down_1|NC_009077.1_5883187_5884075_+	COG4759, COG4759, Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones]	NA|321aa|down_2|NC_009077.1_5884536_5885499_-	cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcriptional regulator) and triphenylmethane reductase (TMR) like proteins, subgroup 1, atypical (a) SDRs	NA|197aa|down_3|NC_009077.1_5885734_5886325_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|459aa|down_4|NC_009077.1_5886327_5887704_-	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters	NA|280aa|down_5|NC_009077.1_5887866_5888706_+	pfam02211, NHase_beta, Nitrile hydratase beta subunit	NA|221aa|down_6|NC_009077.1_5888769_5889432_+	TIGR03887, Thiocyanate_hydrolase_subunit_gamma, thiocyanate hydrolase, gamma subunit	NA|117aa|down_7|NC_009077.1_5889436_5889787_+	NA	NA|260aa|down_8|NC_009077.1_5889805_5890585_+	NA	NA|853aa|down_9|NC_009077.1_5890646_5893205_+	pfam12029, DUF3516, Domain of unknown function (DUF3516)
