The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_011985	Agrobacterium radiobacter K84 chromosome 1, complete sequence	4005130	1675275	1688852	4005130	tRNA	uncultured_Mediterranean_phage(90.91%)	13	NA	NA
WP_012651308.1|1675275_1676289_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	43.4	1.5e-25
WP_007690950.1|1676312_1677164_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	36.8	4.3e-34
WP_012651309.1|1677199_1677889_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	46.5	1.2e-39
WP_007690954.1|1678139_1678349_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	67.4	2.8e-08
WP_012651310.1|1678404_1679091_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_007690958.1|1679087_1679915_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	42.4	4.4e-44
WP_012651311.1|1680015_1681299_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	46.3	5.3e-97
WP_012651312.1|1681315_1682089_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	29.4	2.4e-23
WP_007690964.1|1682085_1682739_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	35.4	7.6e-15
WP_012651313.1|1682909_1684628_+	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV24	Clostridium_phage	33.3	2.2e-13
WP_012651314.1|1684706_1685582_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_007690971.1|1685785_1686136_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	38.0	2.1e-11
WP_012651315.1|1686305_1688852_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	46.6	5.3e-56
>prophage 2
NC_011985	Agrobacterium radiobacter K84 chromosome 1, complete sequence	4005130	1756574	1831800	4005130	capsid,tRNA,tail,head,terminase,portal,protease	Rhizobium_phage(25.0%)	75	NA	NA
WP_012651361.1|1756574_1758248_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_007693425.1|1758446_1760780_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_012651362.1|1760830_1761898_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_007693429.1|1761890_1762364_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_007693431.1|1762360_1763176_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_012651363.1|1763177_1764059_+	LpxI family protein	NA	NA	NA	NA	NA
WP_012651364.1|1764055_1765237_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_007693439.1|1765266_1766556_-	citrate (Si)-synthase	NA	NA	NA	NA	NA
WP_007693442.1|1769282_1770005_-	transcriptional repressor LexA	NA	A0A1B2APZ3	Phage_Wrath	36.8	1.4e-09
WP_012651365.1|1770409_1771297_+	VOC family protein	NA	NA	NA	NA	NA
WP_012651366.1|1771293_1772133_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	40.4	7.4e-47
WP_012651367.1|1772283_1773558_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	62.6	9.9e-144
WP_012651368.1|1773800_1774112_+	septum formation initiator family protein	NA	NA	NA	NA	NA
WP_007693451.1|1774269_1775313_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA	NA
WP_012651369.1|1775331_1776708_+	pyruvate dehydrogenase complex E1 component subunit beta	NA	NA	NA	NA	NA
WP_012651370.1|1776723_1778061_+	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
WP_012651371.1|1778086_1778728_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_012651372.1|1778782_1780228_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_007693459.1|1780283_1780541_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_007693461.1|1780554_1780803_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_012651373.1|1780839_1781811_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_012651374.1|1781952_1782552_+	ATPase AAA	NA	A0A097BYE2	Leuconostoc_phage	34.4	3.2e-28
WP_012651375.1|1782603_1783170_+	ATPase AAA	NA	A0A097BYE2	Leuconostoc_phage	32.9	7.7e-24
WP_041722509.1|1783179_1783623_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_012651377.1|1783613_1784114_-	CinA family protein	NA	B5TK85	Pseudomonas_phage	46.2	1.5e-23
WP_012651378.1|1784110_1785331_-	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_012651379.1|1785553_1786582_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_007693476.1|1786578_1787736_+	nitrogen regulation protein NR(II)	NA	W8CYF6	Bacillus_phage	24.7	4.6e-07
WP_007693477.1|1787732_1789184_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_012651380.1|1789467_1791741_+	PAS domain-containing sensor histidine kinase	NA	W8CYF6	Bacillus_phage	22.8	2.8e-08
WP_007693479.1|1791730_1793095_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_012651381.1|1793170_1794034_+	D-amino-acid transaminase	NA	NA	NA	NA	NA
WP_007693481.1|1794141_1794384_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_007693483.1|1794462_1795794_+	GTPase HflX	NA	NA	NA	NA	NA
WP_012651382.1|1795814_1796651_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_012651383.1|1796676_1797264_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_012651384.1|1797559_1798996_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_007693487.1|1799000_1799315_+	DUF2849 domain-containing protein	NA	NA	NA	NA	NA
WP_012651385.1|1799334_1801008_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_012651386.1|1801018_1801531_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_007693490.1|1801771_1802584_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_041722512.1|1802639_1803254_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_041722515.1|1803431_1803638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007693493.1|1803801_1804050_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_041722516.1|1804697_1804931_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012651389.1|1805025_1805454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012651390.1|1805457_1805730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_151210615.1|1805974_1808059_+	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
WP_012651392.1|1808380_1808593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012651393.1|1808589_1809648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_151210591.1|1809763_1810453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012651395.1|1811273_1811660_+	hypothetical protein	NA	A0A0U2C0X7	Paracoccus_phage	37.0	7.4e-10
WP_151210592.1|1811625_1813530_+|terminase	terminase large subunit	terminase	A0A0U2C138	Paracoccus_phage	49.4	3.3e-159
WP_012651397.1|1813529_1814786_+|portal	phage portal protein	portal	B4UTP1	Rhizobium_phage	76.1	4.6e-170
WP_012651398.1|1814782_1815394_+|head,protease	HK97 family phage prohead protease	head,protease	B4UTP2	Rhizobium_phage	61.1	9.2e-47
WP_012651399.1|1815486_1816767_+|capsid	phage major capsid protein	capsid	B4UTP3	Rhizobium_phage	72.5	8.6e-172
WP_041722519.1|1816813_1817047_+	hypothetical protein	NA	B4UTP6	Rhizobium_phage	72.2	2.1e-20
WP_041722521.1|1817006_1817552_+|head,tail	phage head-tail connector protein	head,tail	B4UTP7	Rhizobium_phage	64.4	3.5e-66
WP_151210593.1|1817557_1817752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012651401.1|1817761_1817920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041722525.1|1817920_1818205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041722527.1|1818316_1818673_+|head,tail	head-tail adaptor protein	head,tail	B4UTP9	Rhizobium_phage	37.0	6.1e-11
WP_187152332.1|1818669_1818840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012651403.1|1818839_1819271_+	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_012651404.1|1819274_1819685_+	DUF3168 domain-containing protein	NA	I3UM06	Rhodobacter_phage	33.6	8.7e-09
WP_012651405.1|1819727_1820159_+|tail	phage tail protein	tail	I3UM07	Rhodobacter_phage	37.1	2.0e-19
WP_012651406.1|1820162_1820546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012651407.1|1820578_1820749_+|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
WP_041723007.1|1820893_1824181_+	M15 family metallopeptidase	NA	A0A2H4GY14	Pseudomonas_phage	45.2	5.9e-31
WP_012651409.1|1824183_1824936_+	hypothetical protein	NA	A0A076GD29	Sinorhizobium_phage	50.4	9.8e-59
WP_012651410.1|1825027_1825627_+	hypothetical protein	NA	A0A076G707	Sinorhizobium_phage	72.9	2.3e-79
WP_151210594.1|1825641_1825989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012651412.1|1826048_1826456_+	hypothetical protein	NA	A0A076G6J4	Sinorhizobium_phage	58.0	2.0e-42
WP_041723008.1|1826479_1829068_+	hypothetical protein	NA	A0A076G8H4	Sinorhizobium_phage	62.5	2.0e-236
WP_151210595.1|1829130_1831800_+	SGNH/GDSL hydrolase family protein	NA	I1VX96	Halocynthia_phage	26.3	1.1e-14
>prophage 1
NC_011983	Agrobacterium radiobacter K84 chromosome 2, complete sequence	2650913	639022	708554	2650913	transposase,integrase,coat	Bacillus_virus(15.38%)	58	644865:644879	711562:711576
WP_012649494.1|639022_639970_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_012649495.1|639985_642400_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_012649496.1|642371_643091_-	molecular chaperone	NA	NA	NA	NA	NA
WP_012649497.1|643112_643610_-|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
WP_012649498.1|644105_646667_+	GcvT family protein	NA	NA	NA	NA	NA
644865:644879	attL	GACCAGGGCAATTCC	NA	NA	NA	NA
WP_012649499.1|646774_647275_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012649500.1|647294_648188_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_012649501.1|648193_649084_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_012649502.1|649080_650181_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.9	4.0e-24
WP_012649503.1|650295_651552_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_034522229.1|651759_652512_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012649505.1|652559_653591_-	glycoside hydrolase family 25 protein	NA	A0A1U9WQS3	Geobacillus_phage	33.2	3.6e-27
WP_007690404.1|653771_654959_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	31.7	2.3e-46
WP_012649506.1|655039_656761_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	29.5	1.5e-06
WP_012649507.1|656768_657890_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_007690398.1|657899_658886_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_012649508.1|659015_660956_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_007690393.1|661169_661883_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012649510.1|661981_662881_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_012649511.1|662959_664546_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_153510648.1|664597_665650_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_012649513.1|665655_666591_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_012649514.1|666587_667445_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_012649515.1|667441_668200_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.3	6.7e-23
WP_012649516.1|668589_669378_-	Myo-inositol-monophosphatase	NA	NA	NA	NA	NA
WP_041723262.1|669377_670250_-	glycerophosphodiester phosphodiesterase family protein	NA	M1ICP4	Paramecium_bursaria_Chlorella_virus	30.6	1.2e-07
WP_161990908.1|670473_671586_+	ROK family transcriptional regulator	NA	NA	NA	NA	NA
WP_012649519.1|671616_673704_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA	NA
WP_007691446.1|674037_674838_-	EF-hand domain-containing protein	NA	NA	NA	NA	NA
WP_012649521.1|675368_676508_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012649522.1|676624_677428_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_007691449.1|677495_677903_-	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_165586804.1|678065_678227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012649524.1|678315_679152_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012649525.1|679207_679441_-	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
WP_012649526.1|679535_681380_-	Cache 3/Cache 2 fusion domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	32.7	1.1e-10
WP_041723264.1|681464_682463_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_012649528.1|682465_683488_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_012649529.1|683477_685028_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.1	1.8e-14
WP_034522204.1|685084_686092_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_007691466.1|686266_686545_-	DUF982 domain-containing protein	NA	NA	NA	NA	NA
WP_012649532.1|687019_688357_+	MHS family MFS transporter	NA	Q6JIH2	Burkholderia_virus	30.8	8.5e-37
WP_012649533.1|688486_689155_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_034522199.1|689277_690147_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_012649536.1|690750_691749_-|transposase	IS5 family transposase	transposase	Q1MVF0	Enterobacteria_phage	36.7	2.5e-49
WP_049783238.1|693202_693739_+	helix-turn-helix transcriptional regulator	NA	K4JNA7	Caulobacter_virus	33.3	1.2e-10
WP_012649540.1|693875_694580_-|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
WP_041723267.1|695020_695998_+	3'-5' exonuclease	NA	M1I8M0	Bacillus_virus	28.7	9.3e-09
WP_034522605.1|697097_697334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012649544.1|697684_699721_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	34.9	1.5e-13
WP_034522191.1|700844_701267_+	DUF4168 domain-containing protein	NA	NA	NA	NA	NA
WP_012649546.1|701526_702648_-	Fic family protein	NA	NA	NA	NA	NA
WP_012649547.1|702812_703994_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012649548.1|703990_704395_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_041723271.1|704391_704649_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA	NA
WP_012649549.1|705147_706041_-	TniQ family protein	NA	NA	NA	NA	NA
WP_012649550.1|706037_706922_-	TniB family NTP-binding protein	NA	NA	NA	NA	NA
WP_041723672.1|706922_708554_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
711562:711576	attR	GACCAGGGCAATTCC	NA	NA	NA	NA
