assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	1	205780-205870	1	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GGGCAAAGCCCGCCTGCGCGGGC	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|458aa|up_7|NC_009523.1_190437_191811_-,NA|786aa|up_5|NC_009523.1_194913_197271_-,NA|169aa|up_4|NC_009523.1_198140_198647_-,NA|118aa|down_6|NC_009523.1_209180_209534_+,NA|156aa|down_7|NC_009523.1_209536_210004_+	NA|508aa|up_9|NC_009523.1_183976_185500_+	TIGR04064, rSAM_nif11, nif11-like peptide radical SAM maturase	NA|1029aa|up_8|NC_009523.1_187336_190423_-	pfam13191, AAA_16, AAA ATPase domain	NA|458aa|up_7|NC_009523.1_190437_191811_-	NA	NA|465aa|up_6|NC_009523.1_193519_194914_-	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators	NA|786aa|up_5|NC_009523.1_194913_197271_-	NA	NA|169aa|up_4|NC_009523.1_198140_198647_-	NA	NA|321aa|up_3|NC_009523.1_198723_199686_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|85aa|up_2|NC_009523.1_199853_200108_-	pfam18475, PIN7, PIN domain	NA|353aa|up_1|NC_009523.1_200409_201467_+	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease	NA|969aa|up_0|NC_009523.1_201995_204902_-	COG1026, COG1026, Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]	NA|67aa|down_0|NC_009523.1_206010_206211_-	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|155aa|down_1|NC_009523.1_206214_206679_-	cd13225, PH-like_bacteria, Pleckstrin homology (PH)-like domains in bacteria (PHb)	NA|121aa|down_2|NC_009523.1_206864_207227_+	cd17574, REC_OmpR, phosphoacceptor receiver (REC) domain of OmpR family response regulators	NA|134aa|down_3|NC_009523.1_207303_207705_-	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains	NA|128aa|down_4|NC_009523.1_207691_208075_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|146aa|down_5|NC_009523.1_208321_208759_+	cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|118aa|down_6|NC_009523.1_209180_209534_+	NA	NA|156aa|down_7|NC_009523.1_209536_210004_+	NA	NA|527aa|down_8|NC_009523.1_209936_211517_-	TIGR03491, TIGR03491, RecB family nuclease, putative, TM0106 family	NA|402aa|down_9|NC_009523.1_211513_212719_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	2	246614-246722	2	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	AAGCCCTCGGCTAGGCGAGGCAAAGCCCGCCTGCGCGGGCT	41	1	25	246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681|246655-246681	NC_009523.1_1977498-1977472|NC_009523.1_2502108-2502082|NC_009523.1_4331639-4331613|NC_009523.1_4846785-4846759|NC_009523.1_5232465-5232439|NC_009523.1_5321622-5321648|NC_009523.1_335950-335976|NC_009523.1_487993-488019|NC_009523.1_814526-814500|NC_009523.1_916962-916936|NC_009523.1_988127-988101|NC_009523.1_1195349-1195323|NC_009523.1_1877125-1877151|NC_009523.1_2137801-2137827|NC_009523.1_2519686-2519660|NC_009523.1_2543527-2543501|NC_009523.1_2891821-2891795|NC_009523.1_3282639-3282665|NC_009523.1_3715486-3715460|NC_009523.1_4452746-4452772|NC_009523.1_4463035-4463009|NC_009523.1_5132772-5132746|NC_009523.1_5230715-5230689|NC_009523.1_5616994-5617020|NC_009523.1_5645119-5645145	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|171aa|up_8|NC_009523.1_239266_239779_+,NA|96aa|up_3|NC_009523.1_243870_244158_+,NA|86aa|down_0|NC_009523.1_247403_247661_+,NA|102aa|down_6|NC_009523.1_254294_254600_-,NA|46aa|down_7|NC_009523.1_254799_254937_-,NA|145aa|down_9|NC_009523.1_255566_256001_+	NA|94aa|up_9|NC_009523.1_238833_239115_+	pfam01329, Pterin_4a, Pterin 4 alpha carbinolamine dehydratase	NA|171aa|up_8|NC_009523.1_239266_239779_+	NA	NA|251aa|up_7|NC_009523.1_239784_240537_+	PRK00104, scpA, segregation and condensation protein A; Reviewed	NA|244aa|up_6|NC_009523.1_240564_241296_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|557aa|up_5|NC_009523.1_241309_242980_-	COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|148aa|up_4|NC_009523.1_243105_243549_+	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|96aa|up_3|NC_009523.1_243870_244158_+	NA	NA|165aa|up_2|NC_009523.1_244388_244883_+	smart00960, Robl_LC7, Roadblock/LC7 domain	NA|192aa|up_1|NC_009523.1_244945_245521_+	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)	NA|269aa|up_0|NC_009523.1_245578_246385_+	pfam14332, DUF4388, Domain of unknown function (DUF4388)	NA|86aa|down_0|NC_009523.1_247403_247661_+	NA	NA|688aa|down_1|NC_009523.1_247811_249875_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|137aa|down_2|NC_009523.1_249915_250326_+	cd17548, REC_DivK-like, phosphoacceptor receiver (REC) domain of DivK and similar proteins	NA|506aa|down_3|NC_009523.1_250855_252373_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|209aa|down_4|NC_009523.1_252380_253007_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|424aa|down_5|NC_009523.1_253003_254275_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|102aa|down_6|NC_009523.1_254294_254600_-	NA	NA|46aa|down_7|NC_009523.1_254799_254937_-	NA	NA|104aa|down_8|NC_009523.1_255135_255447_-	pfam02325, YGGT, YGGT family	NA|145aa|down_9|NC_009523.1_255566_256001_+	NA
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	3	328365-328494	3	CRISPRCasFinder	no	PD-DExK	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Unclear	GCAGCGGCGGCGGCGGGGCGCAGC	24	0	0	NA	NA	NA	2	2	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|216aa|up_1|NC_009523.1_326825_327473_-,NA|143aa|down_1|NC_009523.1_330924_331353_-	NA|414aa|up_9|NC_009523.1_317899_319141_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|224aa|up_8|NC_009523.1_319196_319868_+	cd02588, HAD_L2-DEX, L-2-haloacid dehalogenase	NA|298aa|up_7|NC_009523.1_320507_321401_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|592aa|up_6|NC_009523.1_321397_323173_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|310aa|up_5|NC_009523.1_323442_324372_-	PRK06223, PRK06223, malate dehydrogenase; Reviewed	NA|317aa|up_4|NC_009523.1_324479_325430_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|198aa|up_3|NC_009523.1_325466_326060_-	PRK14790, PRK14790, lipoprotein signal peptidase; Provisional	NA|122aa|up_2|NC_009523.1_326307_326673_-	TIGR02890, conserved_hypothetical_protein, regulatory protein, yteA family	NA|216aa|up_1|NC_009523.1_326825_327473_-	NA	NA|110aa|up_0|NC_009523.1_327629_327959_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|264aa|down_0|NC_009523.1_328628_329420_+	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|143aa|down_1|NC_009523.1_330924_331353_-	NA	NA|440aa|down_2|NC_009523.1_331593_332913_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|169aa|down_3|NC_009523.1_333025_333532_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|513aa|down_4|NC_009523.1_333805_335344_+	pfam00171, Aldedh, Aldehyde dehydrogenase family	NA|208aa|down_5|NC_009523.1_336649_337273_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|587aa|down_6|NC_009523.1_337361_339122_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|266aa|down_7|NC_009523.1_339228_340026_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|415aa|down_8|NC_009523.1_340032_341277_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|671aa|down_9|NC_009523.1_341346_343359_-	pfam08386, Abhydrolase_4, TAP-like protein
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	4	398287-398437	4	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GAGTAGACCACGGATGGGCACGGAT	25	1	1	398312-398331	NC_009523.1_4371012-4370993	NA	2	2	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|197aa|up_9|NC_009523.1_389325_389916_+,NA|282aa|up_8|NC_009523.1_389917_390763_+,NA|276aa|up_6|NC_009523.1_392192_393020_+,NA|378aa|up_5|NC_009523.1_393097_394231_-,NA|281aa|down_0|NC_009523.1_398856_399699_+,NA|61aa|down_1|NC_009523.1_399923_400106_+,NA|145aa|down_2|NC_009523.1_400227_400662_+,NA|161aa|down_3|NC_009523.1_400827_401310_+	NA|197aa|up_9|NC_009523.1_389325_389916_+	NA	NA|282aa|up_8|NC_009523.1_389917_390763_+	NA	NA|295aa|up_7|NC_009523.1_391296_392181_+	pfam04343, DUF488, Protein of unknown function, DUF488	NA|276aa|up_6|NC_009523.1_392192_393020_+	NA	NA|378aa|up_5|NC_009523.1_393097_394231_-	NA	NA|427aa|up_4|NC_009523.1_394230_395511_-	cd02874, GH18_CFLE_spore_hydrolase, Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in  bacterial endospore germination	NA|122aa|up_3|NC_009523.1_395557_395923_-	cd12952, MMP_ACEL2062, Minimal MMP-like domain found in Acidothermus cellulolyticus hypothetical protein ACEL2062 and similar protein	NA|198aa|up_2|NC_009523.1_396060_396654_-	TIGR02952, RNA_polymerase_sigma-70_factor_ECF_subfamily, RNA polymerase sigma-70 factor, TIGR02952 family	NA|219aa|up_1|NC_009523.1_397317_397974_+	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|94aa|up_0|NC_009523.1_397970_398252_+	PRK14444, PRK14444, acylphosphatase; Provisional	NA|281aa|down_0|NC_009523.1_398856_399699_+	NA	NA|61aa|down_1|NC_009523.1_399923_400106_+	NA	NA|145aa|down_2|NC_009523.1_400227_400662_+	NA	NA|161aa|down_3|NC_009523.1_400827_401310_+	NA	NA|816aa|down_4|NC_009523.1_401457_403905_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|258aa|down_5|NC_009523.1_403901_404675_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|408aa|down_6|NC_009523.1_404743_405967_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|193aa|down_7|NC_009523.1_405966_406545_+	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins	NA|384aa|down_8|NC_009523.1_406541_407693_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|472aa|down_9|NC_009523.1_407986_409402_-	PRK13237, PRK13237, tyrosine phenol-lyase; Provisional
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	5	424995-425104	5	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	TAGCCTGCGCAGGCGGGCTTCGCCCTGGATAGCCGAGGGCTT	42	1	39	425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062|425037-425062	NC_009523.1_3647927-3647902|NC_009523.1_4768830-4768805|NC_009523.1_4768898-4768873|NC_009523.1_4768966-4768941|NC_009523.1_4769034-4769009|NC_009523.1_584902-584927|NC_009523.1_585038-585063|NC_009523.1_1140549-1140574|NC_009523.1_1140617-1140642|NC_009523.1_1140685-1140710|NC_009523.1_2520083-2520108|NC_009523.1_3421901-3421876|NC_009523.1_3562744-3562719|NC_009523.1_3925274-3925249|NC_009523.1_4336467-4336492|NC_009523.1_5194044-5194069|NC_009523.1_5558195-5558220|NC_009523.1_186691-186716|NC_009523.1_304639-304664|NC_009523.1_335665-335640|NC_009523.1_335976-335951|NC_009523.1_1091710-1091735|NC_009523.1_1195323-1195348|NC_009523.1_1462489-1462464|NC_009523.1_1570106-1570081|NC_009523.1_1693660-1693685|NC_009523.1_1787542-1787517|NC_009523.1_2309984-2309959|NC_009523.1_2891795-2891820|NC_009523.1_3004418-3004393|NC_009523.1_3485139-3485114|NC_009523.1_3550446-3550421|NC_009523.1_3715460-3715485|NC_009523.1_3867990-3868015|NC_009523.1_4093422-4093397|NC_009523.1_4093490-4093465|NC_009523.1_5193976-5194001|NC_009523.1_5469647-5469672|NC_009523.1_5674881-5674856	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|628aa|up_9|NC_009523.1_411486_413370_-,NA|151aa|down_1|NC_009523.1_426853_427306_-,NA|56aa|down_3|NC_009523.1_429519_429687_+	NA|628aa|up_9|NC_009523.1_411486_413370_-	NA	NA|554aa|up_8|NC_009523.1_413389_415051_-	pfam03703, bPH_2, Bacterial PH domain	NA|245aa|up_7|NC_009523.1_415013_415748_-	PRK00023, cmk, (d)CMP kinase	NA|190aa|up_6|NC_009523.1_415843_416413_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|247aa|up_5|NC_009523.1_416414_417155_+	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed	NA|256aa|up_4|NC_009523.1_417151_417919_+	pfam01927, Mut7-C, Mut7-C RNAse domain	NA|316aa|up_3|NC_009523.1_418023_418971_+	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|114aa|up_2|NC_009523.1_419018_419360_-	pfam04232, SpoVS, Stage V sporulation protein S (SpoVS)	NA|511aa|up_1|NC_009523.1_419549_421082_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|1202aa|up_0|NC_009523.1_421281_424887_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|223aa|down_0|NC_009523.1_425739_426408_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|151aa|down_1|NC_009523.1_426853_427306_-	NA	NA|704aa|down_2|NC_009523.1_427398_429510_+	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|56aa|down_3|NC_009523.1_429519_429687_+	NA	NA|378aa|down_4|NC_009523.1_429700_430834_+	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|287aa|down_5|NC_009523.1_430830_431691_+	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|140aa|down_6|NC_009523.1_431913_432333_+	pfam00072, Response_reg, Response regulator receiver domain	NA|514aa|down_7|NC_009523.1_432580_434122_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|242aa|down_8|NC_009523.1_434503_435229_+	cd05018, CoxG, Carbon monoxide dehydrogenase subunit G (CoxG)	NA|161aa|down_9|NC_009523.1_435279_435762_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	6	522310-522532	1	CRT	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	ACGTTCAACCTTCACCGCTCAACCTTCAACCTTCAACC	38	1	4	522477-522494|522477-522494|522477-522494|522477-522494	NC_009523.1_3922826-3922809|NC_009523.1_5168060-5168043|NC_009523.1_517190-517207|NC_009523.1_1764786-1764803	NA	3	3	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|872aa|up_7|NC_009523.1_510811_513427_+,NA|49aa|down_9|NC_009523.1_536874_537021_+	NA|402aa|up_9|NC_009523.1_507914_509120_+	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated	NA|495aa|up_8|NC_009523.1_509116_510601_+	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|872aa|up_7|NC_009523.1_510811_513427_+	NA	NA|455aa|up_6|NC_009523.1_513508_514873_-	COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]	NA|196aa|up_5|NC_009523.1_515184_515772_+	pfam05818, TraT, Enterobacterial TraT complement resistance protein	NA|446aa|up_4|NC_009523.1_515809_517147_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|487aa|up_3|NC_009523.1_517218_518679_-	PRK05326, PRK05326, potassium/proton antiporter	NA|169aa|up_2|NC_009523.1_519010_519517_-	PRK00522, tpx, thiol peroxidase	NA|492aa|up_1|NC_009523.1_519732_521208_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|134aa|up_0|NC_009523.1_521220_521622_-	pfam09186, DUF1949, Domain of unknown function (DUF1949)	NA|375aa|down_0|NC_009523.1_523857_524982_-	pfam04471, Mrr_cat, Restriction endonuclease	NA|696aa|down_1|NC_009523.1_525035_527123_-	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|654aa|down_2|NC_009523.1_527558_529520_+	cd08513, PBP2_thermophilic_Hb8_like, The substrate-binding component of ABC-type thermophilic oligopeptide-binding protein Hb8-like import systems, contains the type 2 periplasmic binding fold	NA|401aa|down_3|NC_009523.1_529611_530814_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|335aa|down_4|NC_009523.1_530830_531835_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|321aa|down_5|NC_009523.1_531927_532890_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|336aa|down_6|NC_009523.1_532907_533915_+	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional	NA|340aa|down_7|NC_009523.1_533927_534947_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|356aa|down_8|NC_009523.1_534981_536049_+	PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional	NA|49aa|down_9|NC_009523.1_536874_537021_+	NA
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	7	687465-687560	6	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	CCCTACATTGCCCCTCGCCTCGCCCC	26	1	2	687491-687534|687491-687534	NC_009523.1_687422-687465|NC_009523.1_687563-687606	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|88aa|up_5|NC_009523.1_684554_684818_+,NA	NA|159aa|up_9|NC_009523.1_678065_678542_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|724aa|up_8|NC_009523.1_678924_681096_+	pfam01642, MM_CoA_mutase, Methylmalonyl-CoA mutase	NA|741aa|up_7|NC_009523.1_681092_683315_+	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed	NA|379aa|up_6|NC_009523.1_683311_684448_+	PRK09435, PRK09435, methylmalonyl Co-A mutase-associated GTPase MeaB	NA|88aa|up_5|NC_009523.1_684554_684818_+	NA	NA|97aa|up_4|NC_009523.1_684913_685204_+	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|115aa|up_3|NC_009523.1_685193_685538_+	COG2361, COG2361, Uncharacterized conserved protein [Function unknown]	NA|64aa|up_2|NC_009523.1_685644_685836_+	PRK07219, PRK07219, DNA topoisomerase I; Validated	NA|178aa|up_1|NC_009523.1_685863_686397_+	pfam11716, MDMPI_N, Mycothiol maleylpyruvate isomerase N-terminal domain	NA|255aa|up_0|NC_009523.1_686465_687230_+	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|85aa|down_0|NC_009523.1_687822_688077_+	pfam04023, FeoA, FeoA domain	NA|84aa|down_1|NC_009523.1_688069_688321_+	pfam04023, FeoA, FeoA domain	NA|177aa|down_2|NC_009523.1_688317_688848_+	pfam02421, FeoB_N, Ferrous iron transport protein B	NA|578aa|down_3|NC_009523.1_688847_690581_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|85aa|down_4|NC_009523.1_690734_690989_+	pfam09012, FeoC, FeoC like transcriptional regulator	NA|227aa|down_5|NC_009523.1_691586_692267_+	pfam02572, CobA_CobO_BtuR, ATP:corrinoid adenosyltransferase BtuR/CobO/CobP	NA|1454aa|down_6|NC_009523.1_692361_696723_+	PRK05989, cobN, cobaltochelatase subunit CobN; Reviewed	NA|354aa|down_7|NC_009523.1_696949_698011_+	pfam02277, DBI_PRT, Phosphoribosyltransferase	NA|250aa|down_8|NC_009523.1_698151_698901_+	PRK08319, PRK08319, energy-coupling factor ABC transporter permease	NA|99aa|down_9|NC_009523.1_698897_699194_+	PRK02898, PRK02898, energy-coupling factor ABC transporter substrate-binding protein
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	8	796948-798073	7,2,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Type I-E	CGGTTCACCCCCACGGGCGTGGGGACAAT,CGGTTCACCCCCACGGGCGTGGGGACAAT,CGGTTCACCCCCACGGGCGTGGGGACAAT	29,29,29	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	18,18,14	18	TypeI-E	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|438aa|up_9|NC_009523.1_785779_787093_-,NA|64aa|up_7|NC_009523.1_788329_788521_-,NA|109aa|up_6|NC_009523.1_788652_788979_-,NA|163aa|up_4|NC_009523.1_789640_790129_-,NA	NA|438aa|up_9|NC_009523.1_785779_787093_-	NA	NA|353aa|up_8|NC_009523.1_787047_788105_-	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease	NA|64aa|up_7|NC_009523.1_788329_788521_-	NA	NA|109aa|up_6|NC_009523.1_788652_788979_-	NA	NA|97aa|up_5|NC_009523.1_789187_789478_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|163aa|up_4|NC_009523.1_789640_790129_-	NA	NA|230aa|up_3|NC_009523.1_790384_791074_-	pfam13240, zinc_ribbon_2, zinc-ribbon domain	NA|967aa|up_2|NC_009523.1_791446_794347_+	COG0457, NrfG, FOG: TPR repeat [General function prediction only]	NA|352aa|up_1|NC_009523.1_794488_795544_-	pfam05544, Pro_racemase, Proline racemase	NA|139aa|up_0|NC_009523.1_795673_796090_-	pfam12158, DUF3592, Protein of unknown function (DUF3592)	cas2|92aa|down_0|NC_009523.1_798138_798414_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|316aa|down_1|NC_009523.1_798410_799358_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|239aa|down_2|NC_009523.1_799452_800169_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|263aa|down_3|NC_009523.1_800170_800959_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|403aa|down_4|NC_009523.1_800955_802164_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|168aa|down_5|NC_009523.1_802230_802734_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|526aa|down_6|NC_009523.1_802726_804304_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|966aa|down_7|NC_009523.1_804300_807198_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	WYL|333aa|down_8|NC_009523.1_807083_808082_-	pfam13280, WYL, WYL domain	NA|122aa|down_9|NC_009523.1_808234_808600_-	cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	9	899020-899132	8	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GCGGCGCGCAGGCGCGCTTCGGCTTCCCG	29	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|81aa|down_3|NC_009523.1_906232_906475_-,NA|259aa|down_4|NC_009523.1_906532_907309_+,NA|418aa|down_9|NC_009523.1_915113_916367_+	NA|151aa|up_9|NC_009523.1_888030_888483_+	pfam02657, SufE, Fe-S metabolism associated domain	NA|130aa|up_8|NC_009523.1_888482_888872_+	cd06664, IscU_like, Iron-sulfur cluster scaffold-like proteins	NA|313aa|up_7|NC_009523.1_888895_889834_+	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism]	NA|158aa|up_6|NC_009523.1_890016_890490_+	cd08070, MPN_like, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding)	NA|93aa|up_5|NC_009523.1_890758_891037_+	cd17074, Ubl_CysO_like, ubiquitin-like (Ubl) domain found in Mycobacterium tuberculosis CysO and similar proteins	NA|384aa|up_4|NC_009523.1_891149_892301_+	PRK07411, PRK07411, molybdopterin-synthase adenylyltransferase MoeB	NA|70aa|up_3|NC_009523.1_892372_892582_+	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|557aa|up_2|NC_009523.1_892656_894327_+	cd08513, PBP2_thermophilic_Hb8_like, The substrate-binding component of ABC-type thermophilic oligopeptide-binding protein Hb8-like import systems, contains the type 2 periplasmic binding fold	NA|292aa|up_1|NC_009523.1_894347_895223_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|1070aa|up_0|NC_009523.1_895500_898710_+	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|824aa|down_0|NC_009523.1_899924_902396_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|244aa|down_1|NC_009523.1_902518_903250_-	COG1768, COG1768, Predicted phosphohydrolase [General function prediction only]	NA|900aa|down_2|NC_009523.1_903522_906222_+	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|81aa|down_3|NC_009523.1_906232_906475_-	NA	NA|259aa|down_4|NC_009523.1_906532_907309_+	NA	NA|138aa|down_5|NC_009523.1_907774_908188_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|535aa|down_6|NC_009523.1_908610_910215_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|393aa|down_7|NC_009523.1_910211_911390_+	cd17253, RMtype1_S_Eco933I-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Escherichia coli O157:H7 EDL933 S subunit (S	NA|510aa|down_8|NC_009523.1_913567_915097_+	TIGR04435, ABC_transporter, restriction system-associated AAA family ATPase	NA|418aa|down_9|NC_009523.1_915113_916367_+	NA
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	10	907518-907609	9	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	TCGTGCAAGCCCTGCGGGCTGGGATC	26	1	3	907544-907583|907544-907583|907544-907583	NC_009523.1_906371-906410|NC_009523.1_906437-906476|NC_009523.1_906305-906344	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|81aa|up_1|NC_009523.1_906232_906475_-,NA|259aa|up_0|NC_009523.1_906532_907309_+,NA|418aa|down_4|NC_009523.1_915113_916367_+,NA|378aa|down_8|NC_009523.1_919836_920970_-	NA|384aa|up_9|NC_009523.1_891149_892301_+	PRK07411, PRK07411, molybdopterin-synthase adenylyltransferase MoeB	NA|70aa|up_8|NC_009523.1_892372_892582_+	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|557aa|up_7|NC_009523.1_892656_894327_+	cd08513, PBP2_thermophilic_Hb8_like, The substrate-binding component of ABC-type thermophilic oligopeptide-binding protein Hb8-like import systems, contains the type 2 periplasmic binding fold	NA|292aa|up_6|NC_009523.1_894347_895223_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|1070aa|up_5|NC_009523.1_895500_898710_+	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|824aa|up_4|NC_009523.1_899924_902396_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|244aa|up_3|NC_009523.1_902518_903250_-	COG1768, COG1768, Predicted phosphohydrolase [General function prediction only]	NA|900aa|up_2|NC_009523.1_903522_906222_+	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|81aa|up_1|NC_009523.1_906232_906475_-	NA	NA|259aa|up_0|NC_009523.1_906532_907309_+	NA	NA|138aa|down_0|NC_009523.1_907774_908188_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|535aa|down_1|NC_009523.1_908610_910215_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|393aa|down_2|NC_009523.1_910211_911390_+	cd17253, RMtype1_S_Eco933I-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Escherichia coli O157:H7 EDL933 S subunit (S	NA|510aa|down_3|NC_009523.1_913567_915097_+	TIGR04435, ABC_transporter, restriction system-associated AAA family ATPase	NA|418aa|down_4|NC_009523.1_915113_916367_+	NA	NA|239aa|down_5|NC_009523.1_917124_917841_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|435aa|down_6|NC_009523.1_917907_919212_-	TIGR00601, UV_excision_repair_protein_RAD23_homolog_A, UV excision repair protein Rad23	NA|173aa|down_7|NC_009523.1_919227_919746_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|378aa|down_8|NC_009523.1_919836_920970_-	NA	NA|292aa|down_9|NC_009523.1_920980_921856_-	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	11	912500-912793	3	CRT	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GGAGGGGGATGCGTCTGCCCAGGG	24	0	0	NA	NA	NA	4	4	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|81aa|up_4|NC_009523.1_906232_906475_-,NA|259aa|up_3|NC_009523.1_906532_907309_+,NA|418aa|down_1|NC_009523.1_915113_916367_+,NA|378aa|down_5|NC_009523.1_919836_920970_-	NA|292aa|up_9|NC_009523.1_894347_895223_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|1070aa|up_8|NC_009523.1_895500_898710_+	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|824aa|up_7|NC_009523.1_899924_902396_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|244aa|up_6|NC_009523.1_902518_903250_-	COG1768, COG1768, Predicted phosphohydrolase [General function prediction only]	NA|900aa|up_5|NC_009523.1_903522_906222_+	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|81aa|up_4|NC_009523.1_906232_906475_-	NA	NA|259aa|up_3|NC_009523.1_906532_907309_+	NA	NA|138aa|up_2|NC_009523.1_907774_908188_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|535aa|up_1|NC_009523.1_908610_910215_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|393aa|up_0|NC_009523.1_910211_911390_+	cd17253, RMtype1_S_Eco933I-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Escherichia coli O157:H7 EDL933 S subunit (S	NA|510aa|down_0|NC_009523.1_913567_915097_+	TIGR04435, ABC_transporter, restriction system-associated AAA family ATPase	NA|418aa|down_1|NC_009523.1_915113_916367_+	NA	NA|239aa|down_2|NC_009523.1_917124_917841_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|435aa|down_3|NC_009523.1_917907_919212_-	TIGR00601, UV_excision_repair_protein_RAD23_homolog_A, UV excision repair protein Rad23	NA|173aa|down_4|NC_009523.1_919227_919746_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|378aa|down_5|NC_009523.1_919836_920970_-	NA	NA|292aa|down_6|NC_009523.1_920980_921856_-	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|279aa|down_7|NC_009523.1_921933_922770_-	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase	NA|279aa|down_8|NC_009523.1_922776_923613_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|123aa|down_9|NC_009523.1_923687_924056_-	COG2018, COG2018, Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	12	983030-983120	10	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GGCGAAGCCCGCCTGCGCGGGCT	23	1	2	983053-983097|983053-983097	NC_009523.1_4331639-4331595|NC_009523.1_5132772-5132728	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA	NA|134aa|up_9|NC_009523.1_970132_970534_+	cd14771, TrHb2_Mt-trHbO-like_O, Truncated hemoglobins, group 2 (O); Mycobacterium tuberculosis hemoglobin O like	NA|214aa|up_8|NC_009523.1_970611_971253_+	cd04630, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria	NA|454aa|up_7|NC_009523.1_971315_972677_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|712aa|up_6|NC_009523.1_972933_975069_+	pfam13229, Beta_helix, Right handed beta helix region	NA|318aa|up_5|NC_009523.1_975814_976768_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|321aa|up_4|NC_009523.1_977199_978162_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|471aa|up_3|NC_009523.1_978547_979960_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|373aa|up_2|NC_009523.1_979923_981042_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|260aa|up_1|NC_009523.1_981068_981848_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|299aa|up_0|NC_009523.1_981852_982749_-	COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|411aa|down_0|NC_009523.1_983224_984457_-	cd13549, PBP2_Fbp_like_3, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|510aa|down_1|NC_009523.1_984795_986325_+	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|353aa|down_2|NC_009523.1_986396_987455_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|325aa|down_3|NC_009523.1_988550_989525_-	pfam05448, AXE1, Acetyl xylan esterase (AXE1)	NA|304aa|down_4|NC_009523.1_989670_990582_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|294aa|down_5|NC_009523.1_990708_991590_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|205aa|down_6|NC_009523.1_991964_992579_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|164aa|down_7|NC_009523.1_992630_993122_+	PRK09448, PRK09448, DNA starvation/stationary phase protection protein Dps; Provisional	NA|291aa|down_8|NC_009523.1_993471_994344_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|331aa|down_9|NC_009523.1_994340_995333_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	13	984639-984749	11	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	TCGCCACAACGTCGCGTGATTGACAATCCTTCCCGTC	37	1	1	984676-984712	NC_009523.1_5261388-5261424	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA	NA|214aa|up_9|NC_009523.1_970611_971253_+	cd04630, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria	NA|454aa|up_8|NC_009523.1_971315_972677_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|712aa|up_7|NC_009523.1_972933_975069_+	pfam13229, Beta_helix, Right handed beta helix region	NA|318aa|up_6|NC_009523.1_975814_976768_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|321aa|up_5|NC_009523.1_977199_978162_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|471aa|up_4|NC_009523.1_978547_979960_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|373aa|up_3|NC_009523.1_979923_981042_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|260aa|up_2|NC_009523.1_981068_981848_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|299aa|up_1|NC_009523.1_981852_982749_-	COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|411aa|up_0|NC_009523.1_983224_984457_-	cd13549, PBP2_Fbp_like_3, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|510aa|down_0|NC_009523.1_984795_986325_+	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|353aa|down_1|NC_009523.1_986396_987455_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|325aa|down_2|NC_009523.1_988550_989525_-	pfam05448, AXE1, Acetyl xylan esterase (AXE1)	NA|304aa|down_3|NC_009523.1_989670_990582_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|294aa|down_4|NC_009523.1_990708_991590_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|205aa|down_5|NC_009523.1_991964_992579_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|164aa|down_6|NC_009523.1_992630_993122_+	PRK09448, PRK09448, DNA starvation/stationary phase protection protein Dps; Provisional	NA|291aa|down_7|NC_009523.1_993471_994344_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|331aa|down_8|NC_009523.1_994340_995333_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|436aa|down_9|NC_009523.1_995604_996912_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	14	988027-988118	12	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GGGCTTATGGTCTTTGAGTAATTA	24	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA	NA|712aa|up_9|NC_009523.1_972933_975069_+	pfam13229, Beta_helix, Right handed beta helix region	NA|318aa|up_8|NC_009523.1_975814_976768_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|321aa|up_7|NC_009523.1_977199_978162_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|471aa|up_6|NC_009523.1_978547_979960_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|373aa|up_5|NC_009523.1_979923_981042_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|260aa|up_4|NC_009523.1_981068_981848_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|299aa|up_3|NC_009523.1_981852_982749_-	COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|411aa|up_2|NC_009523.1_983224_984457_-	cd13549, PBP2_Fbp_like_3, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|510aa|up_1|NC_009523.1_984795_986325_+	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|353aa|up_0|NC_009523.1_986396_987455_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|325aa|down_0|NC_009523.1_988550_989525_-	pfam05448, AXE1, Acetyl xylan esterase (AXE1)	NA|304aa|down_1|NC_009523.1_989670_990582_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|294aa|down_2|NC_009523.1_990708_991590_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|205aa|down_3|NC_009523.1_991964_992579_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|164aa|down_4|NC_009523.1_992630_993122_+	PRK09448, PRK09448, DNA starvation/stationary phase protection protein Dps; Provisional	NA|291aa|down_5|NC_009523.1_993471_994344_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|331aa|down_6|NC_009523.1_994340_995333_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|436aa|down_7|NC_009523.1_995604_996912_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|354aa|down_8|NC_009523.1_997055_998117_-	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS	NA|230aa|down_9|NC_009523.1_998118_998808_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	15	1004147-1004259	13	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	ATTGTAATCGGTACTGCTTGCTCAATGGCAAACTGATGAG	40	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|55aa|down_7|NC_009523.1_1011540_1011705_+	NA|291aa|up_9|NC_009523.1_993471_994344_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|331aa|up_8|NC_009523.1_994340_995333_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|436aa|up_7|NC_009523.1_995604_996912_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|354aa|up_6|NC_009523.1_997055_998117_-	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS	NA|230aa|up_5|NC_009523.1_998118_998808_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|175aa|up_4|NC_009523.1_998782_999307_-	pfam02627, CMD, Carboxymuconolactone decarboxylase family	NA|234aa|up_3|NC_009523.1_999303_1000005_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|321aa|up_2|NC_009523.1_1001069_1002032_+	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion]	NA|116aa|up_1|NC_009523.1_1002028_1002376_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|231aa|up_0|NC_009523.1_1002399_1003092_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|586aa|down_0|NC_009523.1_1004567_1006325_-	TIGR00815, Sulfate_transporter, high affinity sulphate transporter 1	NA|166aa|down_1|NC_009523.1_1006345_1006843_-	cd14503, PTP-bact, bacterial tyrosine-protein phosphataseS similar to Neisseria NMA1982	NA|197aa|down_2|NC_009523.1_1006868_1007459_-	pfam13686, DrsE_2, DsrE/DsrF/DrsH-like family	NA|84aa|down_3|NC_009523.1_1007500_1007752_-	pfam01206, TusA, Sulfurtransferase TusA	NA|394aa|down_4|NC_009523.1_1007785_1008967_-	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain	NA|135aa|down_5|NC_009523.1_1009637_1010042_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|359aa|down_6|NC_009523.1_1010216_1011293_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|55aa|down_7|NC_009523.1_1011540_1011705_+	NA	NA|501aa|down_8|NC_009523.1_1011749_1013252_+	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|801aa|down_9|NC_009523.1_1013307_1015710_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	16	1009231-1009323	14	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	TTATGGTCTTTGAAGAAATAATCCG	25	1	1	1009256-1009298	NC_009523.1_2377216-2377258	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|55aa|down_2|NC_009523.1_1011540_1011705_+	NA|234aa|up_9|NC_009523.1_999303_1000005_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|321aa|up_8|NC_009523.1_1001069_1002032_+	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion]	NA|116aa|up_7|NC_009523.1_1002028_1002376_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|231aa|up_6|NC_009523.1_1002399_1003092_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|332aa|up_5|NC_009523.1_1003157_1004153_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|586aa|up_4|NC_009523.1_1004567_1006325_-	TIGR00815, Sulfate_transporter, high affinity sulphate transporter 1	NA|166aa|up_3|NC_009523.1_1006345_1006843_-	cd14503, PTP-bact, bacterial tyrosine-protein phosphataseS similar to Neisseria NMA1982	NA|197aa|up_2|NC_009523.1_1006868_1007459_-	pfam13686, DrsE_2, DsrE/DsrF/DrsH-like family	NA|84aa|up_1|NC_009523.1_1007500_1007752_-	pfam01206, TusA, Sulfurtransferase TusA	NA|394aa|up_0|NC_009523.1_1007785_1008967_-	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain	NA|135aa|down_0|NC_009523.1_1009637_1010042_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|359aa|down_1|NC_009523.1_1010216_1011293_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|55aa|down_2|NC_009523.1_1011540_1011705_+	NA	NA|501aa|down_3|NC_009523.1_1011749_1013252_+	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|801aa|down_4|NC_009523.1_1013307_1015710_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|321aa|down_5|NC_009523.1_1016948_1017911_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|524aa|down_6|NC_009523.1_1018276_1019848_-	cd16010, iPGM, 2 3 bisphosphoglycerate independent phosphoglycerate mutase iPGM	NA|1011aa|down_7|NC_009523.1_1019867_1022900_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|567aa|down_8|NC_009523.1_1023248_1024949_+	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|197aa|down_9|NC_009523.1_1024951_1025542_+	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	17	1186318-1186409	15	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GGTTGATAGGACGATGGGAATGG	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA	NA|373aa|up_9|NC_009523.1_1176350_1177469_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|574aa|up_8|NC_009523.1_1177633_1179355_-	COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]	NA|107aa|up_7|NC_009523.1_1179487_1179808_+	pfam14242, DUF4342, Domain of unknown function (DUF4342)	NA|282aa|up_6|NC_009523.1_1180172_1181018_+	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases	NA|343aa|up_5|NC_009523.1_1181014_1182043_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|438aa|up_4|NC_009523.1_1182023_1183337_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|111aa|up_3|NC_009523.1_1183339_1183672_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|283aa|up_2|NC_009523.1_1183816_1184665_-	cd16922, HATPase_EvgS-ArcB-TorS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases, many are hybrid sensor histidine kinases, similar to Escherichia coli EvgS, ArcB, TorS, BarA, RcsC	NA|213aa|up_1|NC_009523.1_1184620_1185259_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|254aa|up_0|NC_009523.1_1185310_1186072_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|450aa|down_0|NC_009523.1_1186818_1188168_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|316aa|down_1|NC_009523.1_1188426_1189374_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|279aa|down_2|NC_009523.1_1189386_1190223_+	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain	NA|124aa|down_3|NC_009523.1_1190437_1190809_+	pfam01155, HypA, Hydrogenase/urease nickel incorporation, metallochaperone, hypA	NA|204aa|down_4|NC_009523.1_1193236_1193848_+	PRK09289, PRK09289, riboflavin synthase	NA|168aa|down_5|NC_009523.1_1194638_1195142_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|144aa|down_6|NC_009523.1_1195544_1195976_+	pfam07849, DUF1641, Protein of unknown function (DUF1641)	NA|236aa|down_7|NC_009523.1_1195953_1196661_+	cd05390, HypB, nickel incorporation protein HypB	NA|90aa|down_8|NC_009523.1_1196999_1197269_+	pfam01455, HupF_HypC, HupF/HypC family	NA|372aa|down_9|NC_009523.1_1197265_1198381_+	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	18	1228958-1229028	16	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GTGGGTGTATTGGTCGGCGTCGG	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|107aa|down_2|NC_009523.1_1231445_1231766_-	NA|220aa|up_9|NC_009523.1_1217143_1217803_+	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|469aa|up_8|NC_009523.1_1217814_1219221_-	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|347aa|up_7|NC_009523.1_1219217_1220258_-	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB	NA|147aa|up_6|NC_009523.1_1220254_1220695_-	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|121aa|up_5|NC_009523.1_1220709_1221072_-	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains	NA|127aa|up_4|NC_009523.1_1221092_1221473_-	cd17574, REC_OmpR, phosphoacceptor receiver (REC) domain of OmpR family response regulators	NA|784aa|up_3|NC_009523.1_1221485_1223837_-	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	NA|609aa|up_2|NC_009523.1_1223854_1225681_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|183aa|up_1|NC_009523.1_1225775_1226324_-	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|218aa|up_0|NC_009523.1_1226458_1227112_-	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|302aa|down_0|NC_009523.1_1229466_1230372_-	pfam04203, Sortase, Sortase family	NA|292aa|down_1|NC_009523.1_1230560_1231436_+	pfam09858, DUF2085, Predicted membrane protein (DUF2085)	NA|107aa|down_2|NC_009523.1_1231445_1231766_-	NA	NA|260aa|down_3|NC_009523.1_1231943_1232723_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|522aa|down_4|NC_009523.1_1232783_1234349_-	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD	NA|55aa|down_5|NC_009523.1_1234528_1234693_+	PRK00595, rpmG, 50S ribosomal protein L33; Validated	NA|519aa|down_6|NC_009523.1_1234959_1236516_+	pfam13552, DUF4127, Protein of unknown function (DUF4127)	NA|297aa|down_7|NC_009523.1_1236512_1237403_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|250aa|down_8|NC_009523.1_1237335_1238085_-	PRK11234, nfrB, phage adsorption protein NrfB	NA|176aa|down_9|NC_009523.1_1238551_1239079_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	19	1257689-1257873	2	PILER-CR	no	WYL	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Unclear	ATAAATAATCCGGTATAGCCCGCGCCGGCGGGCTTCGCCTTGGATAGCCGAG	52	2	207	1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257741-1257758|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826|1257811-1257826	NC_009523.1_11087-11070|NC_009523.1_17634-17617|NC_009523.1_17825-17808|NC_009523.1_149778-149795|NC_009523.1_232634-232651|NC_009523.1_262460-262443|NC_009523.1_262528-262511|NC_009523.1_304380-304363|NC_009523.1_335915-335898|NC_009523.1_336226-336209|NC_009523.1_488026-488009|NC_009523.1_562506-562489|NC_009523.1_579678-579695|NC_009523.1_579746-579763|NC_009523.1_723878-723895|NC_009523.1_814493-814510|NC_009523.1_839858-839841|NC_009523.1_916929-916946|NC_009523.1_1016438-1016455|NC_009523.1_1257872-1257889|NC_009523.1_1462428-1462411|NC_009523.1_1467578-1467561|NC_009523.1_1483964-1483947|NC_009523.1_1634599-1634582|NC_009523.1_1693653-1693670|NC_009523.1_1731704-1731687|NC_009523.1_1787215-1787198|NC_009523.1_1787800-1787783|NC_009523.1_1827446-1827463|NC_009523.1_1829415-1829432|NC_009523.1_1877158-1877141|NC_009523.1_2137834-2137817|NC_009523.1_2150396-2150413|NC_009523.1_2230842-2230825|NC_009523.1_2327133-2327116|NC_009523.1_2351860-2351843|NC_009523.1_2497918-2497935|NC_009523.1_2520076-2520093|NC_009523.1_2860940-2860957|NC_009523.1_2861280-2861297|NC_009523.1_3004155-3004138|NC_009523.1_3282672-3282655|NC_009523.1_3398019-3398036|NC_009523.1_3421840-3421823|NC_009523.1_3421908-3421891|NC_009523.1_3484771-3484754|NC_009523.1_3484839-3484822|NC_009523.1_3496329-3496312|NC_009523.1_3496396-3496379|NC_009523.1_3496673-3496656|NC_009523.1_3550453-3550436|NC_009523.1_3550521-3550504|NC_009523.1_3652901-3652918|NC_009523.1_3654470-3654487|NC_009523.1_3678114-3678097|NC_009523.1_3687098-3687115|NC_009523.1_3852391-3852408|NC_009523.1_4093429-4093412|NC_009523.1_4093497-4093480|NC_009523.1_4126091-4126074|NC_009523.1_4331606-4331623|NC_009523.1_4331674-4331691|NC_009523.1_4366126-4366109|NC_009523.1_4429454-4429437|NC_009523.1_4463002-4463019|NC_009523.1_4699864-4699881|NC_009523.1_4699932-4699949|NC_009523.1_4859241-4859258|NC_009523.1_4978297-4978314|NC_009523.1_5064263-5064246|NC_009523.1_5194037-5194054|NC_009523.1_5230682-5230699|NC_009523.1_5232432-5232449|NC_009523.1_5327928-5327911|NC_009523.1_5328064-5328047|NC_009523.1_149846-149863|NC_009523.1_197805-197788|NC_009523.1_197961-197944|NC_009523.1_268582-268565|NC_009523.1_268650-268633|NC_009523.1_315133-315116|NC_009523.1_536416-536399|NC_009523.1_551413-551430|NC_009523.1_723006-723023|NC_009523.1_771757-771774|NC_009523.1_782283-782266|NC_009523.1_808664-808647|NC_009523.1_991771-991788|NC_009523.1_1000129-1000146|NC_009523.1_1075425-1075442|NC_009523.1_1075493-1075510|NC_009523.1_1075561-1075578|NC_009523.1_1091771-1091788|NC_009523.1_1140542-1140559|NC_009523.1_1140610-1140627|NC_009523.1_1140678-1140695|NC_009523.1_1498764-1498781|NC_009523.1_1525903-1525920|NC_009523.1_1877226-1877209|NC_009523.1_2623747-2623730|NC_009523.1_2860872-2860889|NC_009523.1_2884834-2884851|NC_009523.1_3002765-3002748|NC_009523.1_3003599-3003582|NC_009523.1_3460967-3460984|NC_009523.1_3484910-3484893|NC_009523.1_3562751-3562734|NC_009523.1_3851110-3851127|NC_009523.1_3913896-3913879|NC_009523.1_3919802-3919785|NC_009523.1_4102993-4103010|NC_009523.1_4454107-4454090|NC_009523.1_4707422-4707405|NC_009523.1_5052517-5052500|NC_009523.1_5193969-5193986|NC_009523.1_5327996-5327979|NC_009523.1_5469640-5469657|NC_009523.1_5469708-5469725|NC_009523.1_5469776-5469793|NC_009523.1_5585989-5586006|NC_009523.1_5586057-5586074|NC_009523.1_11085-11070|NC_009523.1_17632-17617|NC_009523.1_17823-17808|NC_009523.1_149780-149795|NC_009523.1_232636-232651|NC_009523.1_262458-262443|NC_009523.1_262526-262511|NC_009523.1_304378-304363|NC_009523.1_335913-335898|NC_009523.1_336224-336209|NC_009523.1_488024-488009|NC_009523.1_562504-562489|NC_009523.1_562572-562557|NC_009523.1_579680-579695|NC_009523.1_579748-579763|NC_009523.1_584897-584912|NC_009523.1_584965-584980|NC_009523.1_585033-585048|NC_009523.1_723880-723895|NC_009523.1_814495-814510|NC_009523.1_839856-839841|NC_009523.1_916931-916946|NC_009523.1_1016440-1016455|NC_009523.1_1257874-1257889|NC_009523.1_1462426-1462411|NC_009523.1_1467576-1467561|NC_009523.1_1483962-1483947|NC_009523.1_1634597-1634582|NC_009523.1_1693655-1693670|NC_009523.1_1731702-1731687|NC_009523.1_1787213-1787198|NC_009523.1_1787798-1787783|NC_009523.1_1827448-1827463|NC_009523.1_1829417-1829432|NC_009523.1_1857610-1857595|NC_009523.1_1857678-1857663|NC_009523.1_1877156-1877141|NC_009523.1_2137832-2137817|NC_009523.1_2150398-2150413|NC_009523.1_2230840-2230825|NC_009523.1_2327131-2327116|NC_009523.1_2351858-2351843|NC_009523.1_2491950-2491935|NC_009523.1_2497920-2497935|NC_009523.1_2502077-2502092|NC_009523.1_2520078-2520093|NC_009523.1_2572668-2572653|NC_009523.1_2825386-2825401|NC_009523.1_2860942-2860957|NC_009523.1_2861282-2861297|NC_009523.1_3004153-3004138|NC_009523.1_3282670-3282655|NC_009523.1_3398021-3398036|NC_009523.1_3421838-3421823|NC_009523.1_3421906-3421891|NC_009523.1_3484769-3484754|NC_009523.1_3484837-3484822|NC_009523.1_3496327-3496312|NC_009523.1_3496394-3496379|NC_009523.1_3496671-3496656|NC_009523.1_3550451-3550436|NC_009523.1_3550519-3550504|NC_009523.1_3652903-3652918|NC_009523.1_3654472-3654487|NC_009523.1_3678112-3678097|NC_009523.1_3687100-3687115|NC_009523.1_3852393-3852408|NC_009523.1_3867985-3868000|NC_009523.1_4093427-4093412|NC_009523.1_4093495-4093480|NC_009523.1_4126089-4126074|NC_009523.1_4331608-4331623|NC_009523.1_4331676-4331691|NC_009523.1_4366124-4366109|NC_009523.1_4429452-4429437|NC_009523.1_4463004-4463019|NC_009523.1_4699866-4699881|NC_009523.1_4699934-4699949|NC_009523.1_4859243-4859258|NC_009523.1_4978299-4978314|NC_009523.1_5064261-5064246|NC_009523.1_5194039-5194054|NC_009523.1_5230684-5230699|NC_009523.1_5232434-5232449|NC_009523.1_5327926-5327911|NC_009523.1_5328062-5328047	NA	2	2	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|51aa|up_3|NC_009523.1_1251476_1251629_+,NA|360aa|down_1|NC_009523.1_1259161_1260241_+,NA|770aa|down_3|NC_009523.1_1262304_1264614_+,NA|75aa|down_5|NC_009523.1_1265660_1265885_-,NA|283aa|down_6|NC_009523.1_1265999_1266848_-	NA|176aa|up_9|NC_009523.1_1238551_1239079_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|783aa|up_8|NC_009523.1_1239163_1241512_+	cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2	NA|215aa|up_7|NC_009523.1_1241857_1242502_-	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|1184aa|up_6|NC_009523.1_1242720_1246272_+	COG3629, DnrI, DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]	NA|1266aa|up_5|NC_009523.1_1246785_1250583_+	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily	NA|172aa|up_4|NC_009523.1_1250951_1251467_+	pfam12158, DUF3592, Protein of unknown function (DUF3592)	NA|51aa|up_3|NC_009523.1_1251476_1251629_+	NA	NA|660aa|up_2|NC_009523.1_1252102_1254082_-	pfam12770, CHAT, CHAT domain	NA|680aa|up_1|NC_009523.1_1254082_1256122_-	pfam12770, CHAT, CHAT domain	NA|475aa|up_0|NC_009523.1_1255943_1257368_-	pfam14353, CpXC, CpXC protein	NA|167aa|down_0|NC_009523.1_1258610_1259111_+	pfam14280, DUF4365, Domain of unknown function (DUF4365)	NA|360aa|down_1|NC_009523.1_1259161_1260241_+	NA	NA|669aa|down_2|NC_009523.1_1260296_1262303_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|770aa|down_3|NC_009523.1_1262304_1264614_+	NA	WYL|344aa|down_4|NC_009523.1_1264632_1265664_-	pfam13280, WYL, WYL domain	NA|75aa|down_5|NC_009523.1_1265660_1265885_-	NA	NA|283aa|down_6|NC_009523.1_1265999_1266848_-	NA	NA|219aa|down_7|NC_009523.1_1266844_1267501_-	cd19365, TenA_C-like, uncharacterized TenA_C proteins	NA|265aa|down_8|NC_009523.1_1267799_1268594_-	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|265aa|down_9|NC_009523.1_1268663_1269458_-	pfam13267, DUF4058, Protein of unknown function (DUF4058)
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	20	1294449-1294598	17	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	TAGCCGATAACCCATAGCCGATGGTCGAGAGGGTCGCCGTTGGAGTTCGCGTTCC	55	1	1	1294504-1294543	NC_009523.1_1294402-1294441	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|476aa|up_9|NC_009523.1_1284412_1285840_-,NA|146aa|up_7|NC_009523.1_1287207_1287645_-,NA|121aa|up_4|NC_009523.1_1289083_1289446_+,NA|46aa|down_8|NC_009523.1_1303581_1303719_+,NA|46aa|down_9|NC_009523.1_1303841_1303979_+	NA|476aa|up_9|NC_009523.1_1284412_1285840_-	NA	NA|445aa|up_8|NC_009523.1_1285876_1287211_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|146aa|up_7|NC_009523.1_1287207_1287645_-	NA	NA|66aa|up_6|NC_009523.1_1287648_1287846_-	cd13946, LysW, Lysine biosynthesis protein LysW	NA|327aa|up_5|NC_009523.1_1287862_1288843_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|121aa|up_4|NC_009523.1_1289083_1289446_+	NA	NA|186aa|up_3|NC_009523.1_1290421_1290979_-	PRK00150, def, peptide deformylase; Reviewed	NA|422aa|up_2|NC_009523.1_1291294_1292560_+	PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit; Reviewed	NA|202aa|up_1|NC_009523.1_1292613_1293219_+	pfam01810, LysE, LysE type translocator	NA|381aa|up_0|NC_009523.1_1293232_1294375_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|167aa|down_0|NC_009523.1_1294915_1295416_+	PRK14023, PRK14023, homoaconitate hydratase small subunit; Provisional	NA|363aa|down_1|NC_009523.1_1295412_1296501_+	COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]	NA|56aa|down_2|NC_009523.1_1296517_1296685_+	cd13946, LysW, Lysine biosynthesis protein LysW	NA|283aa|down_3|NC_009523.1_1296688_1297537_+	TIGR02144, lysine_biosynthesis_enzyme, Lysine biosynthesis enzyme LysX	NA|349aa|down_4|NC_009523.1_1297554_1298601_+	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|504aa|down_5|NC_009523.1_1299274_1300786_+	cd07948, DRE_TIM_HCS, Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain	NA|268aa|down_6|NC_009523.1_1300782_1301586_+	PRK14058, PRK14058, [LysW]-aminoadipate/[LysW]-glutamate kinase	NA|408aa|down_7|NC_009523.1_1301582_1302806_+	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|46aa|down_8|NC_009523.1_1303581_1303719_+	NA	NA|46aa|down_9|NC_009523.1_1303841_1303979_+	NA
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	21	1298897-1299043	18	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GCCGTCGGGCTGAAGCCCTCGGCTATACGGGGCAAAGCCCGCCTGCGCGGGCT	53	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|121aa|up_9|NC_009523.1_1289083_1289446_+,NA|46aa|down_3|NC_009523.1_1303581_1303719_+,NA|46aa|down_4|NC_009523.1_1303841_1303979_+,NA|128aa|down_8|NC_009523.1_1310710_1311094_+	NA|121aa|up_9|NC_009523.1_1289083_1289446_+	NA	NA|186aa|up_8|NC_009523.1_1290421_1290979_-	PRK00150, def, peptide deformylase; Reviewed	NA|422aa|up_7|NC_009523.1_1291294_1292560_+	PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit; Reviewed	NA|202aa|up_6|NC_009523.1_1292613_1293219_+	pfam01810, LysE, LysE type translocator	NA|381aa|up_5|NC_009523.1_1293232_1294375_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|167aa|up_4|NC_009523.1_1294915_1295416_+	PRK14023, PRK14023, homoaconitate hydratase small subunit; Provisional	NA|363aa|up_3|NC_009523.1_1295412_1296501_+	COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]	NA|56aa|up_2|NC_009523.1_1296517_1296685_+	cd13946, LysW, Lysine biosynthesis protein LysW	NA|283aa|up_1|NC_009523.1_1296688_1297537_+	TIGR02144, lysine_biosynthesis_enzyme, Lysine biosynthesis enzyme LysX	NA|349aa|up_0|NC_009523.1_1297554_1298601_+	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|504aa|down_0|NC_009523.1_1299274_1300786_+	cd07948, DRE_TIM_HCS, Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain	NA|268aa|down_1|NC_009523.1_1300782_1301586_+	PRK14058, PRK14058, [LysW]-aminoadipate/[LysW]-glutamate kinase	NA|408aa|down_2|NC_009523.1_1301582_1302806_+	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|46aa|down_3|NC_009523.1_1303581_1303719_+	NA	NA|46aa|down_4|NC_009523.1_1303841_1303979_+	NA	NA|891aa|down_5|NC_009523.1_1304915_1307588_+	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional	NA|415aa|down_6|NC_009523.1_1307768_1309013_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|392aa|down_7|NC_009523.1_1309332_1310508_+	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|128aa|down_8|NC_009523.1_1310710_1311094_+	NA	NA|5167aa|down_9|NC_009523.1_1311534_1327035_+	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	22	1463873-1463987	19	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	CGCCTGCTGTCTCTGGGGACGGGTCGTCTGA	31	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|160aa|up_0|NC_009523.1_1461746_1462226_+,NA|119aa|down_0|NC_009523.1_1464735_1465092_-,NA|100aa|down_2|NC_009523.1_1467651_1467951_-	NA|95aa|up_9|NC_009523.1_1453830_1454115_-	PRK05738, rplW, 50S ribosomal protein L23; Reviewed	NA|224aa|up_8|NC_009523.1_1454111_1454783_-	PRK05319, rplD, 50S ribosomal protein L4; Provisional	NA|211aa|up_7|NC_009523.1_1454827_1455460_-	PRK00001, rplC, 50S ribosomal protein L3; Validated	NA|103aa|up_6|NC_009523.1_1455520_1455829_-	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed	NA|402aa|up_5|NC_009523.1_1455943_1457149_-	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|702aa|up_4|NC_009523.1_1457203_1459309_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|158aa|up_3|NC_009523.1_1459415_1459889_-	PRK05302, PRK05302, 30S ribosomal protein S7; Validated	NA|145aa|up_2|NC_009523.1_1459945_1460380_-	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|305aa|up_1|NC_009523.1_1460685_1461600_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|160aa|up_0|NC_009523.1_1461746_1462226_+	NA	NA|119aa|down_0|NC_009523.1_1464735_1465092_-	NA	NA|149aa|down_1|NC_009523.1_1466167_1466614_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|100aa|down_2|NC_009523.1_1467651_1467951_-	NA	NA|476aa|down_3|NC_009523.1_1468053_1469481_-	cd01965, Nitrogenase_MoFe_beta_like, Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like	NA|477aa|down_4|NC_009523.1_1469477_1470908_-	cd01967, Nitrogenase_MoFe_alpha_like, Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like	NA|314aa|down_5|NC_009523.1_1470876_1471818_-	TIGR01290, FeMo_cofactor_biosynthesis_protein_NifB, nitrogenase cofactor biosynthesis protein NifB	NA|274aa|down_6|NC_009523.1_1471845_1472667_-	cd02040, NifH, nitrogenase component II NifH	NA|302aa|down_7|NC_009523.1_1473423_1474329_+	cd10935, CE4_WalW, Putative catalytic domain of lipopolysaccharide biosynthesis protein WalW and its bacterial homologs	NA|969aa|down_8|NC_009523.1_1474341_1477248_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|321aa|down_9|NC_009523.1_1477327_1478290_-	pfam01548, DEDD_Tnp_IS110, Transposase
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	23	1492763-1492846	20	CRISPRCasFinder	no	csa3	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Type I-A	GATGTCGAGGCGCAGCGCCGCTGCGCCC	28	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|106aa|up_4|NC_009523.1_1484920_1485238_+,NA|137aa|up_1|NC_009523.1_1488241_1488652_-,NA	NA|321aa|up_9|NC_009523.1_1477327_1478290_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|885aa|up_8|NC_009523.1_1479279_1481934_+	cd10914, Peptidase_C25_N_1, uncharacterized subgroup of the Peptidase C25 family N-terminal domain	NA|207aa|up_7|NC_009523.1_1482478_1483099_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|196aa|up_6|NC_009523.1_1483123_1483711_+	cd12124, Pgbs, Protoglobins (Pgbs)	NA|262aa|up_5|NC_009523.1_1484098_1484884_+	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|106aa|up_4|NC_009523.1_1484920_1485238_+	NA	NA|549aa|up_3|NC_009523.1_1485676_1487323_-	PRK13169, PRK13169, DNA replication initiation control protein YabA	NA|276aa|up_2|NC_009523.1_1487410_1488238_+	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism]	NA|137aa|up_1|NC_009523.1_1488241_1488652_-	NA	NA|1193aa|up_0|NC_009523.1_1489160_1492739_+	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	NA|225aa|down_0|NC_009523.1_1492852_1493527_-	PRK00279, adk, adenylate kinase; Reviewed	NA|229aa|down_1|NC_009523.1_1493557_1494244_-	PRK14562, PRK14562, haloacid dehalogenase superfamily protein; Provisional	NA|598aa|down_2|NC_009523.1_1494461_1496255_+	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein	NA|315aa|down_3|NC_009523.1_1496309_1497254_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|327aa|down_4|NC_009523.1_1497491_1498472_+	pfam01916, DS, Deoxyhypusine synthase	NA|353aa|down_5|NC_009523.1_1499935_1500993_-	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease	csa3|122aa|down_6|NC_009523.1_1502979_1503345_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|283aa|down_7|NC_009523.1_1503434_1504283_+	PRK11873, arsM, arsenite methyltransferase	NA|433aa|down_8|NC_009523.1_1504349_1505648_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|337aa|down_9|NC_009523.1_1505772_1506783_-	PRK08955, PRK08955, glyceraldehyde-3-phosphate dehydrogenase; Validated
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	24	1517439-1517521	21	CRISPRCasFinder	no	csa3	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Type I-A	ATGACTTCACTGCAAACGCGCACCGC	26	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|121aa|up_1|NC_009523.1_1515960_1516323_+,NA|169aa|down_2|NC_009523.1_1519536_1520043_+,NA|58aa|down_4|NC_009523.1_1523433_1523607_+,NA|115aa|down_7|NC_009523.1_1526423_1526768_+	NA|259aa|up_9|NC_009523.1_1506811_1507588_-	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family	NA|255aa|up_8|NC_009523.1_1507609_1508374_-	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family	NA|279aa|up_7|NC_009523.1_1508464_1509301_-	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel	NA|439aa|up_6|NC_009523.1_1509324_1510641_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|165aa|up_5|NC_009523.1_1511396_1511891_-	cd10441, GIY-YIG_COG1833, GIY-YIG domain of hypothetical proteins from archaea and their bacterial homologs	NA|660aa|up_4|NC_009523.1_1511955_1513935_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|213aa|up_3|NC_009523.1_1514022_1514661_+	PRK09639, PRK09639, RNA polymerase sigma factor SigX; Provisional	NA|382aa|up_2|NC_009523.1_1514657_1515803_+	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]	NA|121aa|up_1|NC_009523.1_1515960_1516323_+	NA	NA|311aa|up_0|NC_009523.1_1516416_1517349_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|346aa|down_0|NC_009523.1_1517581_1518619_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|305aa|down_1|NC_009523.1_1518615_1519530_+	TIGR03448, mycothiol_MshD, mycothiol synthase	NA|169aa|down_2|NC_009523.1_1519536_1520043_+	NA	NA|863aa|down_3|NC_009523.1_1520205_1522794_-	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|58aa|down_4|NC_009523.1_1523433_1523607_+	NA	NA|181aa|down_5|NC_009523.1_1523610_1524153_+	pfam09572, RE_XamI, XamI restriction endonuclease	NA|535aa|down_6|NC_009523.1_1524158_1525763_+	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|115aa|down_7|NC_009523.1_1526423_1526768_+	NA	NA|859aa|down_8|NC_009523.1_1526737_1529314_+	pfam12770, CHAT, CHAT domain	NA|458aa|down_9|NC_009523.1_1529344_1530718_-	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	25	1548242-1548314	22	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GCTGCGTCCCAGGGTGCTGCGTCC	24	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA	NA|741aa|up_9|NC_009523.1_1534643_1536866_+	cd00102, IPT, Immunoglobulin-like fold, Plexins, Transcription factors (IPT)	NA|484aa|up_8|NC_009523.1_1537080_1538532_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|270aa|up_7|NC_009523.1_1538627_1539437_+	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|173aa|up_6|NC_009523.1_1539433_1539952_+	pfam13828, DUF4190, Domain of unknown function (DUF4190)	NA|473aa|up_5|NC_009523.1_1539972_1541391_+	PRK07486, PRK07486, amidase; Provisional	NA|601aa|up_4|NC_009523.1_1541490_1543293_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|281aa|up_3|NC_009523.1_1543394_1544237_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|272aa|up_2|NC_009523.1_1544233_1545049_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|495aa|up_1|NC_009523.1_1545045_1546530_-	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic	NA|464aa|up_0|NC_009523.1_1546821_1548213_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|248aa|down_0|NC_009523.1_1548440_1549184_+	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|260aa|down_1|NC_009523.1_1549230_1550010_+	cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E	NA|206aa|down_2|NC_009523.1_1550031_1550649_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|186aa|down_3|NC_009523.1_1550747_1551305_+	pfam14907, NTP_transf_5, Uncharacterized nucleotidyltransferase	NA|1505aa|down_4|NC_009523.1_1551586_1556101_-	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|1230aa|down_5|NC_009523.1_1556186_1559876_-	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|176aa|down_6|NC_009523.1_1565014_1565542_+	pfam07811, TadE, TadE-like protein	NA|579aa|down_7|NC_009523.1_1565565_1567302_+	smart00758, PA14, domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins	NA|825aa|down_8|NC_009523.1_1567443_1569918_+	smart00327, VWA, von Willebrand factor (vWF) type A domain	c2c9_V-U4|254aa|down_9|NC_009523.1_1570283_1571045_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	26	1560859-1560935	23	CRISPRCasFinder	no	c2c9_V-U4	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Type V-U4	TTCAACGTTCAACCTTCAACGTTCAAC	27	1	5	1560886-1560907|1560886-1560907|1560886-1560907|1560886-1560907|1560886-1560907	NC_009523.1_1560970-1560991|NC_009523.1_1560844-1560865|NC_009523.1_1560928-1560949|NC_009523.1_1560949-1560970|NC_009523.1_1560991-1561012	NA	1	1	TypeV-U4	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|46aa|down_5|NC_009523.1_1574035_1574173_-	NA|281aa|up_9|NC_009523.1_1543394_1544237_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|272aa|up_8|NC_009523.1_1544233_1545049_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|495aa|up_7|NC_009523.1_1545045_1546530_-	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic	NA|464aa|up_6|NC_009523.1_1546821_1548213_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|248aa|up_5|NC_009523.1_1548440_1549184_+	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|260aa|up_4|NC_009523.1_1549230_1550010_+	cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E	NA|206aa|up_3|NC_009523.1_1550031_1550649_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|186aa|up_2|NC_009523.1_1550747_1551305_+	pfam14907, NTP_transf_5, Uncharacterized nucleotidyltransferase	NA|1505aa|up_1|NC_009523.1_1551586_1556101_-	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|1230aa|up_0|NC_009523.1_1556186_1559876_-	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|176aa|down_0|NC_009523.1_1565014_1565542_+	pfam07811, TadE, TadE-like protein	NA|579aa|down_1|NC_009523.1_1565565_1567302_+	smart00758, PA14, domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins	NA|825aa|down_2|NC_009523.1_1567443_1569918_+	smart00327, VWA, von Willebrand factor (vWF) type A domain	c2c9_V-U4|254aa|down_3|NC_009523.1_1570283_1571045_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|863aa|down_4|NC_009523.1_1571070_1573659_+	sd00038, Kelch, Kelch repeat	NA|46aa|down_5|NC_009523.1_1574035_1574173_-	NA	NA|339aa|down_6|NC_009523.1_1574760_1575777_+	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|431aa|down_7|NC_009523.1_1575910_1577203_+	cd03111, CpaE-like, pilus assembly ATPase CpaE	NA|464aa|down_8|NC_009523.1_1577229_1578621_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|328aa|down_9|NC_009523.1_1578681_1579665_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	27	1561006-1561145	24	CRISPRCasFinder	no	c2c9_V-U4	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Type V-U4	TTCAACGTTCAACCTTCAACGTTCAAC	27	1	243	1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117|1561096-1561117	NC_009523.1_20624-20603|NC_009523.1_30952-30973|NC_009523.1_30959-30980|NC_009523.1_30966-30987|NC_009523.1_30973-30994|NC_009523.1_30980-31001|NC_009523.1_30987-31008|NC_009523.1_30994-31015|NC_009523.1_73091-73112|NC_009523.1_363378-363399|NC_009523.1_363385-363406|NC_009523.1_363441-363462|NC_009523.1_522518-522539|NC_009523.1_522525-522546|NC_009523.1_711004-710983|NC_009523.1_711084-711063|NC_009523.1_917877-917898|NC_009523.1_921876-921897|NC_009523.1_921883-921904|NC_009523.1_1177604-1177625|NC_009523.1_1177611-1177632|NC_009523.1_1290388-1290409|NC_009523.1_1290395-1290416|NC_009523.1_1562006-1562027|NC_009523.1_1562013-1562034|NC_009523.1_1770223-1770244|NC_009523.1_1770230-1770251|NC_009523.1_1770258-1770279|NC_009523.1_1821689-1821710|NC_009523.1_1821696-1821717|NC_009523.1_1821703-1821724|NC_009523.1_1821710-1821731|NC_009523.1_1821739-1821760|NC_009523.1_1821746-1821767|NC_009523.1_1821753-1821774|NC_009523.1_1821760-1821781|NC_009523.1_1893935-1893914|NC_009523.1_1971441-1971420|NC_009523.1_1971448-1971427|NC_009523.1_1971455-1971434|NC_009523.1_1971462-1971441|NC_009523.1_1971469-1971448|NC_009523.1_1971476-1971455|NC_009523.1_2314265-2314244|NC_009523.1_2314272-2314251|NC_009523.1_2314279-2314258|NC_009523.1_2314286-2314265|NC_009523.1_2669441-2669462|NC_009523.1_2669448-2669469|NC_009523.1_2677727-2677706|NC_009523.1_2677734-2677713|NC_009523.1_2677741-2677720|NC_009523.1_2677748-2677727|NC_009523.1_2765674-2765653|NC_009523.1_2765681-2765660|NC_009523.1_2765688-2765667|NC_009523.1_2842004-2842025|NC_009523.1_2842011-2842032|NC_009523.1_3329149-3329128|NC_009523.1_3329156-3329135|NC_009523.1_3922813-3922792|NC_009523.1_4018572-4018551|NC_009523.1_4068454-4068475|NC_009523.1_4112174-4112195|NC_009523.1_4116974-4116995|NC_009523.1_4182171-4182150|NC_009523.1_4222832-4222853|NC_009523.1_4222874-4222895|NC_009523.1_4491554-4491575|NC_009523.1_4491561-4491582|NC_009523.1_4491568-4491589|NC_009523.1_4656950-4656971|NC_009523.1_4656957-4656978|NC_009523.1_4656999-4657020|NC_009523.1_4657006-4657027|NC_009523.1_4657013-4657034|NC_009523.1_4657020-4657041|NC_009523.1_4882245-4882266|NC_009523.1_5067452-5067473|NC_009523.1_5067459-5067480|NC_009523.1_5067466-5067487|NC_009523.1_5082859-5082838|NC_009523.1_5136962-5136983|NC_009523.1_5136969-5136990|NC_009523.1_5136976-5136997|NC_009523.1_5136983-5137004|NC_009523.1_5136990-5137011|NC_009523.1_5136997-5137018|NC_009523.1_5137004-5137025|NC_009523.1_5137011-5137032|NC_009523.1_5137018-5137039|NC_009523.1_5138082-5138103|NC_009523.1_5168047-5168026|NC_009523.1_5217058-5217079|NC_009523.1_5232252-5232231|NC_009523.1_5232259-5232238|NC_009523.1_5506835-5506856|NC_009523.1_5506870-5506891|NC_009523.1_5506877-5506898|NC_009523.1_5506884-5506905|NC_009523.1_5538613-5538634|NC_009523.1_5538620-5538641|NC_009523.1_5538627-5538648|NC_009523.1_5538664-5538685|NC_009523.1_5538671-5538692|NC_009523.1_5538708-5538729|NC_009523.1_5538715-5538736|NC_009523.1_5538722-5538743|NC_009523.1_5573050-5573029|NC_009523.1_31001-31022|NC_009523.1_282964-282943|NC_009523.1_363056-363077|NC_009523.1_522532-522553|NC_009523.1_611213-611192|NC_009523.1_1505751-1505772|NC_009523.1_1679325-1679346|NC_009523.1_1679353-1679374|NC_009523.1_1679367-1679388|NC_009523.1_1679381-1679402|NC_009523.1_1764899-1764920|NC_009523.1_1764906-1764927|NC_009523.1_1764920-1764941|NC_009523.1_1764927-1764948|NC_009523.1_1770237-1770258|NC_009523.1_1770244-1770265|NC_009523.1_1818835-1818856|NC_009523.1_1819002-1819023|NC_009523.1_1893928-1893907|NC_009523.1_1971427-1971406|NC_009523.1_1971434-1971413|NC_009523.1_2238860-2238839|NC_009523.1_2238909-2238888|NC_009523.1_2238923-2238902|NC_009523.1_2373242-2373263|NC_009523.1_2373256-2373277|NC_009523.1_2480456-2480477|NC_009523.1_2764200-2764179|NC_009523.1_2764207-2764186|NC_009523.1_2768235-2768256|NC_009523.1_2869538-2869517|NC_009523.1_2869573-2869552|NC_009523.1_2869608-2869587|NC_009523.1_3667730-3667709|NC_009523.1_4068483-4068504|NC_009523.1_4112181-4112202|NC_009523.1_4116960-4116981|NC_009523.1_4130844-4130823|NC_009523.1_4130851-4130830|NC_009523.1_4222846-4222867|NC_009523.1_4222860-4222881|NC_009523.1_4222867-4222888|NC_009523.1_4438217-4438238|NC_009523.1_4438252-4438273|NC_009523.1_4651971-4651950|NC_009523.1_4656873-4656894|NC_009523.1_4656922-4656943|NC_009523.1_4656971-4656992|NC_009523.1_4756253-4756274|NC_009523.1_5067531-5067552|NC_009523.1_5067538-5067559|NC_009523.1_5217065-5217086|NC_009523.1_5232238-5232217|NC_009523.1_5232245-5232224|NC_009523.1_5244198-5244177|NC_009523.1_5244205-5244184|NC_009523.1_5506821-5506842|NC_009523.1_5506849-5506870|NC_009523.1_5506856-5506877|NC_009523.1_5571175-5571196|NC_009523.1_5571182-5571203|NC_009523.1_5572966-5572945|NC_009523.1_5572980-5572959|NC_009523.1_5572994-5572973|NC_009523.1_5573008-5572987|NC_009523.1_5573022-5573001|NC_009523.1_5573036-5573015|NC_009523.1_5573043-5573022|NC_009523.1_5573064-5573043|NC_009523.1_363392-363413|NC_009523.1_363448-363469|NC_009523.1_517203-517224|NC_009523.1_611206-611185|NC_009523.1_764080-764059|NC_009523.1_764094-764073|NC_009523.1_921897-921918|NC_009523.1_1164807-1164828|NC_009523.1_1177590-1177611|NC_009523.1_1290359-1290380|NC_009523.1_1290381-1290402|NC_009523.1_1505702-1505723|NC_009523.1_1505744-1505765|NC_009523.1_1573717-1573696|NC_009523.1_1573738-1573717|NC_009523.1_1586052-1586073|NC_009523.1_1679311-1679332|NC_009523.1_1679339-1679360|NC_009523.1_1679360-1679381|NC_009523.1_1679374-1679395|NC_009523.1_1679388-1679409|NC_009523.1_1957373-1957394|NC_009523.1_2238895-2238874|NC_009523.1_2390474-2390495|NC_009523.1_2390481-2390502|NC_009523.1_2451235-2451214|NC_009523.1_2480296-2480317|NC_009523.1_2562798-2562819|NC_009523.1_2562805-2562826|NC_009523.1_2562896-2562917|NC_009523.1_2562903-2562924|NC_009523.1_2562932-2562953|NC_009523.1_2562980-2563001|NC_009523.1_2562987-2563008|NC_009523.1_2563001-2563022|NC_009523.1_2563037-2563058|NC_009523.1_2669455-2669476|NC_009523.1_2768214-2768235|NC_009523.1_2768221-2768242|NC_009523.1_2869496-2869475|NC_009523.1_2869503-2869482|NC_009523.1_2869517-2869496|NC_009523.1_2869524-2869503|NC_009523.1_2869552-2869531|NC_009523.1_2869559-2869538|NC_009523.1_2869587-2869566|NC_009523.1_2869594-2869573|NC_009523.1_3101098-3101077|NC_009523.1_3471371-3471350|NC_009523.1_4067320-4067341|NC_009523.1_4130880-4130859|NC_009523.1_4222811-4222832|NC_009523.1_4222818-4222839|NC_009523.1_4222853-4222874|NC_009523.1_4397696-4397717|NC_009523.1_4397724-4397745|NC_009523.1_4651978-4651957|NC_009523.1_4656845-4656866|NC_009523.1_4656852-4656873|NC_009523.1_4656901-4656922|NC_009523.1_5067517-5067538|NC_009523.1_5067552-5067573|NC_009523.1_5082845-5082824|NC_009523.1_5535850-5535871|NC_009523.1_5726400-5726421	NA	2	2	TypeV-U4	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|46aa|down_5|NC_009523.1_1574035_1574173_-	NA|281aa|up_9|NC_009523.1_1543394_1544237_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|272aa|up_8|NC_009523.1_1544233_1545049_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|495aa|up_7|NC_009523.1_1545045_1546530_-	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic	NA|464aa|up_6|NC_009523.1_1546821_1548213_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|248aa|up_5|NC_009523.1_1548440_1549184_+	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|260aa|up_4|NC_009523.1_1549230_1550010_+	cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E	NA|206aa|up_3|NC_009523.1_1550031_1550649_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|186aa|up_2|NC_009523.1_1550747_1551305_+	pfam14907, NTP_transf_5, Uncharacterized nucleotidyltransferase	NA|1505aa|up_1|NC_009523.1_1551586_1556101_-	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|1230aa|up_0|NC_009523.1_1556186_1559876_-	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|176aa|down_0|NC_009523.1_1565014_1565542_+	pfam07811, TadE, TadE-like protein	NA|579aa|down_1|NC_009523.1_1565565_1567302_+	smart00758, PA14, domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins	NA|825aa|down_2|NC_009523.1_1567443_1569918_+	smart00327, VWA, von Willebrand factor (vWF) type A domain	c2c9_V-U4|254aa|down_3|NC_009523.1_1570283_1571045_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|863aa|down_4|NC_009523.1_1571070_1573659_+	sd00038, Kelch, Kelch repeat	NA|46aa|down_5|NC_009523.1_1574035_1574173_-	NA	NA|339aa|down_6|NC_009523.1_1574760_1575777_+	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|431aa|down_7|NC_009523.1_1575910_1577203_+	cd03111, CpaE-like, pilus assembly ATPase CpaE	NA|464aa|down_8|NC_009523.1_1577229_1578621_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|328aa|down_9|NC_009523.1_1578681_1579665_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	28	1561754-1562020	25	CRISPRCasFinder	no	c2c9_V-U4	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Type 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NC_009523.1_1905064-1905046|NC_009523.1_2016955-2016937|NC_009523.1_2451196-2451178|NC_009523.1_2538187-2538169|NC_009523.1_2538194-2538176|NC_009523.1_3101102-3101084|NC_009523.1_3667720-3667702|NC_009523.1_3765467-3765449|NC_009523.1_3765509-3765491|NC_009523.1_3765593-3765575|NC_009523.1_3765614-3765596|NC_009523.1_3771952-3771934|NC_009523.1_3922838-3922820|NC_009523.1_4130748-4130730|NC_009523.1_4182161-4182143|NC_009523.1_4306778-4306760|NC_009523.1_4352125-4352107|NC_009523.1_4727071-4727053|NC_009523.1_4806606-4806588|NC_009523.1_5082926-5082908|NC_009523.1_5082954-5082936|NC_009523.1_5265492-5265474|NC_009523.1_5267259-5267241|NC_009523.1_5267288-5267270|NC_009523.1_363073-363091|NC_009523.1_363283-363301|NC_009523.1_363332-363350|NC_009523.1_363416-363434|NC_009523.1_1238511-1238529|NC_009523.1_1356187-1356205|NC_009523.1_1356209-1356227|NC_009523.1_1356246-1356264|NC_009523.1_1505719-1505737|NC_009523.1_1505740-1505758|NC_009523.1_1562023-1562041|NC_009523.1_1586048-1586066|NC_009523.1_1679129-1679147|NC_009523.1_1724587-1724605|NC_009523.1_1724609-1724627|NC_009523.1_1724631-1724649|NC_009523.1_1724720-1724738|NC_009523.1_1724780-1724798|NC_009523.1_1821641-1821659|NC_009523.1_2390287-2390305|NC_009523.1_2390294-2390312|NC_009523.1_2526027-2526045|NC_009523.1_2526292-2526310|NC_009523.1_2526425-2526443|NC_009523.1_3068613-3068631|NC_009523.1_3068663-3068681|NC_009523.1_3068670-3068688|NC_009523.1_3068726-3068744|NC_009523.1_3068733-3068751|NC_009523.1_3068740-3068758|NC_009523.1_3471403-3471421|NC_009523.1_3498109-3498127|NC_009523.1_3695975-3695993|NC_009523.1_4067432-4067450|NC_009523.1_4067502-4067520|NC_009523.1_4067544-4067562|NC_009523.1_4655716-4655734|NC_009523.1_4655788-4655806|NC_009523.1_4655802-4655820|NC_009523.1_4655860-4655878|NC_009523.1_4655924-4655942|NC_009523.1_4756227-4756245|NC_009523.1_5042178-5042196|NC_009523.1_5042318-5042336|NC_009523.1_5042403-5042421|NC_009523.1_5042431-5042449|NC_009523.1_5042459-5042477|NC_009523.1_5042487-5042505|NC_009523.1_5042544-5042562|NC_009523.1_5042600-5042618|NC_009523.1_5042628-5042646|NC_009523.1_5137984-5138002|NC_009523.1_5550575-5550593|NC_009523.1_5550627-5550645|NC_009523.1_5550716-5550734	NA	5	5	TypeV-U4	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|46aa|down_5|NC_009523.1_1574035_1574173_-	NA|281aa|up_9|NC_009523.1_1543394_1544237_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|272aa|up_8|NC_009523.1_1544233_1545049_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|495aa|up_7|NC_009523.1_1545045_1546530_-	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic	NA|464aa|up_6|NC_009523.1_1546821_1548213_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|248aa|up_5|NC_009523.1_1548440_1549184_+	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|260aa|up_4|NC_009523.1_1549230_1550010_+	cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E	NA|206aa|up_3|NC_009523.1_1550031_1550649_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|186aa|up_2|NC_009523.1_1550747_1551305_+	pfam14907, NTP_transf_5, Uncharacterized nucleotidyltransferase	NA|1505aa|up_1|NC_009523.1_1551586_1556101_-	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|1230aa|up_0|NC_009523.1_1556186_1559876_-	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|176aa|down_0|NC_009523.1_1565014_1565542_+	pfam07811, TadE, TadE-like protein	NA|579aa|down_1|NC_009523.1_1565565_1567302_+	smart00758, PA14, domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins	NA|825aa|down_2|NC_009523.1_1567443_1569918_+	smart00327, VWA, von Willebrand factor (vWF) type A domain	c2c9_V-U4|254aa|down_3|NC_009523.1_1570283_1571045_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|863aa|down_4|NC_009523.1_1571070_1573659_+	sd00038, Kelch, Kelch repeat	NA|46aa|down_5|NC_009523.1_1574035_1574173_-	NA	NA|339aa|down_6|NC_009523.1_1574760_1575777_+	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|431aa|down_7|NC_009523.1_1575910_1577203_+	cd03111, CpaE-like, pilus assembly ATPase CpaE	NA|464aa|down_8|NC_009523.1_1577229_1578621_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|328aa|down_9|NC_009523.1_1578681_1579665_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	29	1563315-1563485	26	CRISPRCasFinder	no	c2c9_V-U4	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Type V-U4	TTCAACGTTCAACCTTCAACGTTCAAC	27	2	122	1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563387-1563408|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457|1563436-1563457	NC_009523.1_1177597-1177618|NC_009523.1_1818995-1819016|NC_009523.1_1900522-1900543|NC_009523.1_2451206-2451185|NC_009523.1_2562812-2562833|NC_009523.1_2563008-2563029|NC_009523.1_2869489-2869468|NC_009523.1_2869510-2869489|NC_009523.1_3792626-3792647|NC_009523.1_3792655-3792676|NC_009523.1_3792728-3792749|NC_009523.1_3792757-3792778|NC_009523.1_3792786-3792807|NC_009523.1_3792815-3792836|NC_009523.1_3792888-3792909|NC_009523.1_4222825-4222846|NC_009523.1_5067524-5067545|NC_009523.1_5067559-5067580|NC_009523.1_764073-764052|NC_009523.1_889857-889836|NC_009523.1_1679318-1679339|NC_009523.1_1679346-1679367|NC_009523.1_1764913-1764934|NC_009523.1_1770251-1770272|NC_009523.1_2480233-2480254|NC_009523.1_2480254-2480275|NC_009523.1_2768228-2768249|NC_009523.1_2869531-2869510|NC_009523.1_2869545-2869524|NC_009523.1_2869566-2869545|NC_009523.1_2869580-2869559|NC_009523.1_2869601-2869580|NC_009523.1_2869615-2869594|NC_009523.1_3792597-3792618|NC_009523.1_4116967-4116988|NC_009523.1_4182112-4182091|NC_009523.1_4438224-4438245|NC_009523.1_4438259-4438280|NC_009523.1_4656838-4656859|NC_009523.1_4656859-4656880|NC_009523.1_4656908-4656929|NC_009523.1_4656943-4656964|NC_009523.1_4656992-4657013|NC_009523.1_5232266-5232245|NC_009523.1_5535864-5535885|NC_009523.1_5572959-5572938|NC_009523.1_5573057-5573036|NC_009523.1_363077-363098|NC_009523.1_889871-889850|NC_009523.1_1679213-1679234|NC_009523.1_1679297-1679318|NC_009523.1_1679304-1679325|NC_009523.1_1764934-1764955|NC_009523.1_1900558-1900579|NC_009523.1_2238867-2238846|NC_009523.1_2238874-2238853|NC_009523.1_2238902-2238881|NC_009523.1_2238916-2238895|NC_009523.1_2373235-2373256|NC_009523.1_2373249-2373270|NC_009523.1_2373263-2373284|NC_009523.1_2480289-2480310|NC_009523.1_2562994-2563015|NC_009523.1_2669483-2669504|NC_009523.1_3117339-3117318|NC_009523.1_3117374-3117353|NC_009523.1_4067327-4067348|NC_009523.1_4116953-4116974|NC_009523.1_4397710-4397731|NC_009523.1_4397731-4397752|NC_009523.1_5535836-5535857|NC_009523.1_5535843-5535864|NC_009523.1_5535857-5535878|NC_009523.1_5571168-5571189|NC_009523.1_5572973-5572952|NC_009523.1_5572987-5572966|NC_009523.1_5573001-5572980|NC_009523.1_5573015-5572994|NC_009523.1_5573029-5573008|NC_009523.1_5573071-5573050|NC_009523.1_5573078-5573057|NC_009523.1_5535822-5535843|NC_009523.1_2869503-2869482|NC_009523.1_2869524-2869503|NC_009523.1_2869559-2869538|NC_009523.1_2869594-2869573|NC_009523.1_1290359-1290380|NC_009523.1_2562798-2562819|NC_009523.1_2562896-2562917|NC_009523.1_2562980-2563001|NC_009523.1_2669455-2669476|NC_009523.1_4222811-4222832|NC_009523.1_1893928-1893907|NC_009523.1_1971434-1971413|NC_009523.1_2314258-2314237|NC_009523.1_2509388-2509367|NC_009523.1_2764207-2764186|NC_009523.1_3117182-3117161|NC_009523.1_3667730-3667709|NC_009523.1_5232245-5232224|NC_009523.1_5573043-5573022|NC_009523.1_31001-31022|NC_009523.1_522532-522553|NC_009523.1_1561131-1561152|NC_009523.1_1679332-1679353|NC_009523.1_1764899-1764920|NC_009523.1_1764920-1764941|NC_009523.1_1770237-1770258|NC_009523.1_1902761-1902782|NC_009523.1_1902782-1902803|NC_009523.1_1902803-1902824|NC_009523.1_1902824-1902845|NC_009523.1_1902852-1902873|NC_009523.1_2480219-2480240|NC_009523.1_2480240-2480261|NC_009523.1_2480261-2480282|NC_009523.1_2768214-2768235|NC_009523.1_3230253-3230274|NC_009523.1_4656845-4656866|NC_009523.1_5067531-5067552|NC_009523.1_5067545-5067566|NC_009523.1_5571182-5571203	NA	3	3	TypeV-U4	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|46aa|down_5|NC_009523.1_1574035_1574173_-	NA|281aa|up_9|NC_009523.1_1543394_1544237_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|272aa|up_8|NC_009523.1_1544233_1545049_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|495aa|up_7|NC_009523.1_1545045_1546530_-	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic	NA|464aa|up_6|NC_009523.1_1546821_1548213_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|248aa|up_5|NC_009523.1_1548440_1549184_+	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|260aa|up_4|NC_009523.1_1549230_1550010_+	cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E	NA|206aa|up_3|NC_009523.1_1550031_1550649_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|186aa|up_2|NC_009523.1_1550747_1551305_+	pfam14907, NTP_transf_5, Uncharacterized nucleotidyltransferase	NA|1505aa|up_1|NC_009523.1_1551586_1556101_-	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|1230aa|up_0|NC_009523.1_1556186_1559876_-	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|176aa|down_0|NC_009523.1_1565014_1565542_+	pfam07811, TadE, TadE-like protein	NA|579aa|down_1|NC_009523.1_1565565_1567302_+	smart00758, PA14, domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins	NA|825aa|down_2|NC_009523.1_1567443_1569918_+	smart00327, VWA, von Willebrand factor (vWF) type A domain	c2c9_V-U4|254aa|down_3|NC_009523.1_1570283_1571045_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|863aa|down_4|NC_009523.1_1571070_1573659_+	sd00038, Kelch, Kelch repeat	NA|46aa|down_5|NC_009523.1_1574035_1574173_-	NA	NA|339aa|down_6|NC_009523.1_1574760_1575777_+	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|431aa|down_7|NC_009523.1_1575910_1577203_+	cd03111, CpaE-like, pilus assembly ATPase CpaE	NA|464aa|down_8|NC_009523.1_1577229_1578621_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|328aa|down_9|NC_009523.1_1578681_1579665_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	30	1564684-1564857	27	CRISPRCasFinder	no	c2c9_V-U4	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Type V-U4	TTCAACGTTCAACCTTCAACGTTCAAC	27	3	361	1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564711-1564732|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564760-1564781|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-1564830|1564809-156483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09523.1_2526289-2526310|NC_009523.1_2563030-2563051|NC_009523.1_3068695-3068716|NC_009523.1_3068709-3068730|NC_009523.1_3068723-3068744|NC_009523.1_3068765-3068786|NC_009523.1_4655879-4655900|NC_009523.1_4657034-4657055|NC_009523.1_4756304-4756325|NC_009523.1_5041978-5041999|NC_009523.1_5042006-5042027|NC_009523.1_5042034-5042055|NC_009523.1_5042090-5042111|NC_009523.1_5042118-5042139|NC_009523.1_5042147-5042168|NC_009523.1_5042175-5042196|NC_009523.1_5042203-5042224|NC_009523.1_5042259-5042280|NC_009523.1_5042287-5042308|NC_009523.1_5042315-5042336|NC_009523.1_5042343-5042364|NC_009523.1_5042372-5042393|NC_009523.1_5042400-5042421|NC_009523.1_5042428-5042449|NC_009523.1_5042456-5042477|NC_009523.1_5042484-5042505|NC_009523.1_5042513-5042534|NC_009523.1_5042541-5042562|NC_009523.1_5042570-5042591	NA	3	3	TypeV-U4	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|46aa|down_5|NC_009523.1_1574035_1574173_-	NA|281aa|up_9|NC_009523.1_1543394_1544237_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|272aa|up_8|NC_009523.1_1544233_1545049_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|495aa|up_7|NC_009523.1_1545045_1546530_-	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic	NA|464aa|up_6|NC_009523.1_1546821_1548213_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|248aa|up_5|NC_009523.1_1548440_1549184_+	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|260aa|up_4|NC_009523.1_1549230_1550010_+	cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E	NA|206aa|up_3|NC_009523.1_1550031_1550649_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|186aa|up_2|NC_009523.1_1550747_1551305_+	pfam14907, NTP_transf_5, Uncharacterized nucleotidyltransferase	NA|1505aa|up_1|NC_009523.1_1551586_1556101_-	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|1230aa|up_0|NC_009523.1_1556186_1559876_-	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|176aa|down_0|NC_009523.1_1565014_1565542_+	pfam07811, TadE, TadE-like protein	NA|579aa|down_1|NC_009523.1_1565565_1567302_+	smart00758, PA14, domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins	NA|825aa|down_2|NC_009523.1_1567443_1569918_+	smart00327, VWA, von Willebrand factor (vWF) type A domain	c2c9_V-U4|254aa|down_3|NC_009523.1_1570283_1571045_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|863aa|down_4|NC_009523.1_1571070_1573659_+	sd00038, Kelch, Kelch repeat	NA|46aa|down_5|NC_009523.1_1574035_1574173_-	NA	NA|339aa|down_6|NC_009523.1_1574760_1575777_+	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|431aa|down_7|NC_009523.1_1575910_1577203_+	cd03111, CpaE-like, pilus assembly ATPase CpaE	NA|464aa|down_8|NC_009523.1_1577229_1578621_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|328aa|down_9|NC_009523.1_1578681_1579665_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	31	1721711-1721816	28	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	CCCTCGGCTAGCCAGGGCGAAGCCCGCCTGCGCGGGCT	38	1	4	1721749-1721778|1721749-1721778|1721749-1721778|1721749-1721778	NC_009523.1_4846785-4846756|NC_009523.1_1195349-1195320|NC_009523.1_2543527-2543498|NC_009523.1_2891821-2891792	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|92aa|up_9|NC_009523.1_1711298_1711574_-,NA|184aa|up_5|NC_009523.1_1714645_1715197_-,NA|81aa|up_3|NC_009523.1_1715861_1716104_-,NA|113aa|down_4|NC_009523.1_1726086_1726425_+,NA|106aa|down_8|NC_009523.1_1734378_1734696_+,NA|82aa|down_9|NC_009523.1_1734815_1735061_+	NA|92aa|up_9|NC_009523.1_1711298_1711574_-	NA	NA|437aa|up_8|NC_009523.1_1711607_1712918_-	PRK15387, PRK15387, type III secretion system effector E3 ubiquitin transferase SspH2	NA|201aa|up_7|NC_009523.1_1713275_1713878_-	pfam06271, RDD, RDD family	NA|127aa|up_6|NC_009523.1_1713918_1714299_-	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit	NA|184aa|up_5|NC_009523.1_1714645_1715197_-	NA	NA|184aa|up_4|NC_009523.1_1715283_1715835_-	pfam12158, DUF3592, Protein of unknown function (DUF3592)	NA|81aa|up_3|NC_009523.1_1715861_1716104_-	NA	NA|286aa|up_2|NC_009523.1_1716876_1717734_-	cd19100, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein	NA|887aa|up_1|NC_009523.1_1717877_1720538_+	pfam09594, GT87, Glycosyltransferase family 87	NA|185aa|up_0|NC_009523.1_1720740_1721295_-	pfam05685, Uma2, Putative restriction endonuclease	NA|185aa|down_0|NC_009523.1_1721900_1722455_-	pfam05685, Uma2, Putative restriction endonuclease	NA|277aa|down_1|NC_009523.1_1722737_1723568_-	cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation	NA|313aa|down_2|NC_009523.1_1723577_1724516_-	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|282aa|down_3|NC_009523.1_1724940_1725786_-	COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]	NA|113aa|down_4|NC_009523.1_1726086_1726425_+	NA	NA|553aa|down_5|NC_009523.1_1726430_1728089_+	pfam01752, Peptidase_M9, Collagenase	NA|416aa|down_6|NC_009523.1_1729989_1731237_+	cd13692, PBP2_BztA, Substrate bindng domain of ABC glutamate/glutamine/aspartate/asparagine transporter; the type 2 periplasmic binding protein fold	NA|531aa|down_7|NC_009523.1_1732394_1733987_-	TIGR02800, Protein_TolB, tol-pal system beta propeller repeat protein TolB	NA|106aa|down_8|NC_009523.1_1734378_1734696_+	NA	NA|82aa|down_9|NC_009523.1_1734815_1735061_+	NA
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	32	1735901-1736001	29	CRISPRCasFinder	no	cmr1gr7,cas10,csm3gr7,csx10gr5	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	 or Type III-D?,Type III-A, Type III-A,Type III-C,Type III-D,Type III-B	TTGGAGTTCGCGTTCCGTGCAGGGGGGCTT	30	0	0	NA	NA	NA	1	1	orTypeIII-D?,TypeIII-A,TypeIII-C,TypeIII-A,TypeIII-D,TypeIII-B	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|113aa|up_6|NC_009523.1_1726086_1726425_+,NA|106aa|up_2|NC_009523.1_1734378_1734696_+,NA|82aa|up_1|NC_009523.1_1734815_1735061_+,NA|89aa|down_0|NC_009523.1_1738126_1738393_-,NA|50aa|down_7|NC_009523.1_1745648_1745798_+	NA|277aa|up_9|NC_009523.1_1722737_1723568_-	cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation	NA|313aa|up_8|NC_009523.1_1723577_1724516_-	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|282aa|up_7|NC_009523.1_1724940_1725786_-	COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]	NA|113aa|up_6|NC_009523.1_1726086_1726425_+	NA	NA|553aa|up_5|NC_009523.1_1726430_1728089_+	pfam01752, Peptidase_M9, Collagenase	NA|416aa|up_4|NC_009523.1_1729989_1731237_+	cd13692, PBP2_BztA, Substrate bindng domain of ABC glutamate/glutamine/aspartate/asparagine transporter; the type 2 periplasmic binding protein fold	NA|531aa|up_3|NC_009523.1_1732394_1733987_-	TIGR02800, Protein_TolB, tol-pal system beta propeller repeat protein TolB	NA|106aa|up_2|NC_009523.1_1734378_1734696_+	NA	NA|82aa|up_1|NC_009523.1_1734815_1735061_+	NA	NA|89aa|up_0|NC_009523.1_1735057_1735324_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|89aa|down_0|NC_009523.1_1738126_1738393_-	NA	NA|53aa|down_1|NC_009523.1_1738399_1738558_-	PRK14715, PRK14715, DNA-directed DNA polymerase II large subunit	NA|474aa|down_2|NC_009523.1_1738715_1740137_-	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism]	NA|221aa|down_3|NC_009523.1_1740151_1740814_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|790aa|down_4|NC_009523.1_1741027_1743397_-	PRK06599, PRK06599, DNA topoisomerase I; Validated	NA|302aa|down_5|NC_009523.1_1743783_1744689_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|262aa|down_6|NC_009523.1_1744875_1745661_-	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|50aa|down_7|NC_009523.1_1745648_1745798_+	NA	NA|292aa|down_8|NC_009523.1_1745801_1746677_-	cd09989, Arginase, Arginase family	NA|1058aa|down_9|NC_009523.1_1746724_1749898_-	COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and metabolism]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	33	1787024-1787114	30	CRISPRCasFinder	no	WYL	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Unclear	ATGGAGATTGAGAATTTAATCCG	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|82aa|up_7|NC_009523.1_1776995_1777241_-,NA|283aa|down_0|NC_009523.1_1790727_1791576_-,NA|85aa|down_2|NC_009523.1_1792377_1792632_+,NA|248aa|down_6|NC_009523.1_1795732_1796476_-	NA|453aa|up_9|NC_009523.1_1774121_1775480_-	PRK12391, PRK12391, TrpB-like pyridoxal phosphate-dependent enzyme	NA|253aa|up_8|NC_009523.1_1776123_1776882_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|82aa|up_7|NC_009523.1_1776995_1777241_-	NA	NA|174aa|up_6|NC_009523.1_1777253_1777775_-	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins	NA|426aa|up_5|NC_009523.1_1777851_1779129_-	cd01465, vWA_subgroup, VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|323aa|up_4|NC_009523.1_1779236_1780205_-	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|654aa|up_3|NC_009523.1_1780282_1782244_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|208aa|up_2|NC_009523.1_1782684_1783308_+	pfam08239, SH3_3, Bacterial SH3 domain	NA|387aa|up_1|NC_009523.1_1783338_1784499_-	COG4277, COG4277, Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]	WYL|342aa|up_0|NC_009523.1_1785846_1786872_+	pfam13280, WYL, WYL domain	NA|283aa|down_0|NC_009523.1_1790727_1791576_-	NA	NA|191aa|down_1|NC_009523.1_1791593_1792166_-	PRK09641, PRK09641, RNA polymerase sigma factor SigW; Provisional	NA|85aa|down_2|NC_009523.1_1792377_1792632_+	NA	NA|396aa|down_3|NC_009523.1_1792693_1793881_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|216aa|down_4|NC_009523.1_1794012_1794660_-	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|360aa|down_5|NC_009523.1_1794656_1795736_-	pfam12358, DUF3644, Protein of unknown function (DUF3644)	NA|248aa|down_6|NC_009523.1_1795732_1796476_-	NA	NA|353aa|down_7|NC_009523.1_1796589_1797647_+	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease	NA|839aa|down_8|NC_009523.1_1797653_1800170_-	NF033455, BREX_6_MTaseX, BREX-6 system adenine-specific DNA-methyltransferase PglX	NA|1141aa|down_9|NC_009523.1_1800174_1803597_-	cd09178, PLDc_N_Snf2_like, N-terminal putative catalytic domain of uncharacterized HKD family nucleases fused to putative helicases from the Snf2-like family
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	34	1804007-1804119	31	CRISPRCasFinder	no	WYL	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Unclear	ATGTCAACGCCTGTGCCCAACGTTCAACGGTTGCCGCTT	39	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|283aa|up_9|NC_009523.1_1790727_1791576_-,NA|85aa|up_7|NC_009523.1_1792377_1792632_+,NA|248aa|up_3|NC_009523.1_1795732_1796476_-,NA|418aa|down_5|NC_009523.1_1812623_1813877_+	NA|283aa|up_9|NC_009523.1_1790727_1791576_-	NA	NA|191aa|up_8|NC_009523.1_1791593_1792166_-	PRK09641, PRK09641, RNA polymerase sigma factor SigW; Provisional	NA|85aa|up_7|NC_009523.1_1792377_1792632_+	NA	NA|396aa|up_6|NC_009523.1_1792693_1793881_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|216aa|up_5|NC_009523.1_1794012_1794660_-	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|360aa|up_4|NC_009523.1_1794656_1795736_-	pfam12358, DUF3644, Protein of unknown function (DUF3644)	NA|248aa|up_3|NC_009523.1_1795732_1796476_-	NA	NA|353aa|up_2|NC_009523.1_1796589_1797647_+	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease	NA|839aa|up_1|NC_009523.1_1797653_1800170_-	NF033455, BREX_6_MTaseX, BREX-6 system adenine-specific DNA-methyltransferase PglX	NA|1141aa|up_0|NC_009523.1_1800174_1803597_-	cd09178, PLDc_N_Snf2_like, N-terminal putative catalytic domain of uncharacterized HKD family nucleases fused to putative helicases from the Snf2-like family	NA|240aa|down_0|NC_009523.1_1804178_1804898_+	cd05233, SDR_c, classical (c) SDRs	NA|389aa|down_1|NC_009523.1_1804872_1806039_-	cd02165, NMNAT, Nicotinamide/nicotinate mononucleotide adenylyltransferase	NA|309aa|down_2|NC_009523.1_1806092_1807019_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|323aa|down_3|NC_009523.1_1807167_1808136_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|1236aa|down_4|NC_009523.1_1808135_1811843_-	cd11347, AmyAc_1, Alpha amylase catalytic domain found in an uncharacterized protein family	NA|418aa|down_5|NC_009523.1_1812623_1813877_+	NA	NA|248aa|down_6|NC_009523.1_1814082_1814826_+	pfam10881, DUF2726, Protein of unknown function (DUF2726)	NA|344aa|down_7|NC_009523.1_1814981_1816013_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|413aa|down_8|NC_009523.1_1816019_1817258_+	pfam04143, Sulf_transp, Sulphur transport	NA|510aa|down_9|NC_009523.1_1817279_1818809_-	COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	35	1889811-1889910	32	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	AATAATCCGGTCTAGCCCGCGCAGGCGGGCTT	32	1	9	1889843-1889878|1889843-1889878|1889843-1889878|1889843-1889878|1889843-1889878|1889843-1889878|1889843-1889878|1889843-1889878|1889843-1889878	NC_009523.1_4126106-4126071|NC_009523.1_808679-808644|NC_009523.1_3398004-3398039|NC_009523.1_4699917-4699952|NC_009523.1_268597-268562|NC_009523.1_268665-268630|NC_009523.1_1462443-1462408|NC_009523.1_1257857-1257892|NC_009523.1_2860857-2860892	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|92aa|down_6|NC_009523.1_1900175_1900451_-	NA|311aa|up_9|NC_009523.1_1879692_1880625_-	pfam05853, BKACE, beta-keto acid cleavage enzyme	NA|235aa|up_8|NC_009523.1_1880642_1881347_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|243aa|up_7|NC_009523.1_1881333_1882062_-	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|254aa|up_6|NC_009523.1_1882082_1882844_-	pfam04199, Cyclase, Putative cyclase	NA|201aa|up_5|NC_009523.1_1883224_1883827_-	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|133aa|up_4|NC_009523.1_1883830_1884229_-	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|290aa|up_3|NC_009523.1_1884243_1885113_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|429aa|up_2|NC_009523.1_1885119_1886406_-	cd06338, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|230aa|up_1|NC_009523.1_1886433_1887123_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|624aa|up_0|NC_009523.1_1887628_1889500_-	cd15482, Sialidase_non-viral, Non-viral sialidases	NA|632aa|down_0|NC_009523.1_1890088_1891984_-	pfam15902, Sortilin-Vps10, Sortilin, neurotensin receptor 3,	NA|517aa|down_1|NC_009523.1_1892317_1893868_+	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional	NA|514aa|down_2|NC_009523.1_1894196_1895738_+	cd06460, M32_Taq, Peptidase family M32, which includes thermostable carboxypeptidases TaqCP, PfuCP and FisCP	NA|239aa|down_3|NC_009523.1_1895792_1896509_+	COG4305, COG4305, Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]	NA|617aa|down_4|NC_009523.1_1896766_1898617_+	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit	NA|349aa|down_5|NC_009523.1_1898971_1900018_+	PRK05778, PRK05778, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated	NA|92aa|down_6|NC_009523.1_1900175_1900451_-	NA	NA|204aa|down_7|NC_009523.1_1900770_1901382_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|360aa|down_8|NC_009523.1_1901384_1902464_-	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|260aa|down_9|NC_009523.1_1902940_1903720_+	COG0623, FabI, Enoyl-[acyl-carrier-protein]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	36	1891959-1892065	33	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	TTCTCTTCCTCCGCCGGGCGCAACAGGGCGAACCCC	36	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|92aa|down_5|NC_009523.1_1900175_1900451_-	NA|311aa|up_9|NC_009523.1_1879692_1880625_-	pfam05853, BKACE, beta-keto acid cleavage enzyme	NA|235aa|up_8|NC_009523.1_1880642_1881347_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|243aa|up_7|NC_009523.1_1881333_1882062_-	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|254aa|up_6|NC_009523.1_1882082_1882844_-	pfam04199, Cyclase, Putative cyclase	NA|201aa|up_5|NC_009523.1_1883224_1883827_-	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|133aa|up_4|NC_009523.1_1883830_1884229_-	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|290aa|up_3|NC_009523.1_1884243_1885113_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|429aa|up_2|NC_009523.1_1885119_1886406_-	cd06338, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|230aa|up_1|NC_009523.1_1886433_1887123_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|624aa|up_0|NC_009523.1_1887628_1889500_-	cd15482, Sialidase_non-viral, Non-viral sialidases	NA|517aa|down_0|NC_009523.1_1892317_1893868_+	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional	NA|514aa|down_1|NC_009523.1_1894196_1895738_+	cd06460, M32_Taq, Peptidase family M32, which includes thermostable carboxypeptidases TaqCP, PfuCP and FisCP	NA|239aa|down_2|NC_009523.1_1895792_1896509_+	COG4305, COG4305, Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]	NA|617aa|down_3|NC_009523.1_1896766_1898617_+	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit	NA|349aa|down_4|NC_009523.1_1898971_1900018_+	PRK05778, PRK05778, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated	NA|92aa|down_5|NC_009523.1_1900175_1900451_-	NA	NA|204aa|down_6|NC_009523.1_1900770_1901382_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|360aa|down_7|NC_009523.1_1901384_1902464_-	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|260aa|down_8|NC_009523.1_1902940_1903720_+	COG0623, FabI, Enoyl-[acyl-carrier-protein]	NA|408aa|down_9|NC_009523.1_1903703_1904927_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	37	1980540-1980665	34	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	CCGACCACCCCTTCAGCAGGTGGCGGATTCGGT	33	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|61aa|up_9|NC_009523.1_1963689_1963872_+,NA|88aa|down_8|NC_009523.1_1994653_1994917_+	NA|61aa|up_9|NC_009523.1_1963689_1963872_+	NA	NA|667aa|up_8|NC_009523.1_1963905_1965906_+	pfam05547, Peptidase_M6, Immune inhibitor A peptidase M6	NA|278aa|up_7|NC_009523.1_1965917_1966751_+	TIGR04001, thiol_BshB1, bacillithiol biosynthesis deacetylase BshB1	NA|515aa|up_6|NC_009523.1_1966698_1968243_-	pfam03772, Competence, Competence protein	NA|965aa|up_5|NC_009523.1_1968493_1971388_+	cd06583, PGRP, Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls	NA|351aa|up_4|NC_009523.1_1971554_1972607_+	cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs	NA|891aa|up_3|NC_009523.1_1972706_1975379_-	TIGR00387, Glycolate_oxidase_subunit_glcD	NA|143aa|up_2|NC_009523.1_1975636_1976065_-	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]	NA|306aa|up_1|NC_009523.1_1976302_1977220_+	COG2962, RarD, Predicted permeases [General function prediction only]	NA|767aa|up_0|NC_009523.1_1977703_1980004_+	COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|471aa|down_0|NC_009523.1_1981526_1982939_+	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|712aa|down_1|NC_009523.1_1983079_1985215_+	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|900aa|down_2|NC_009523.1_1985361_1988061_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|469aa|down_3|NC_009523.1_1988008_1989415_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|231aa|down_4|NC_009523.1_1989772_1990465_+	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	NA|324aa|down_5|NC_009523.1_1990529_1991501_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|865aa|down_6|NC_009523.1_1991560_1994155_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|88aa|down_7|NC_009523.1_1994393_1994657_+	COG0579, COG0579, Predicted dehydrogenase [General function prediction only]	NA|88aa|down_8|NC_009523.1_1994653_1994917_+	NA	NA|391aa|down_9|NC_009523.1_1994928_1996101_+	TIGR03883, DUF2342_F420, uncharacterized protein, coenzyme F420 biosynthesis associated
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	38	2038700-2038822	35	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GCCAGAAGGTGGCGCTACGCCAGCATTCGCTCC	33	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|551aa|up_9|NC_009523.1_2027358_2029011_+,NA|139aa|up_6|NC_009523.1_2033007_2033424_+,NA|123aa|up_2|NC_009523.1_2036660_2037029_+,NA|65aa|up_1|NC_009523.1_2037033_2037228_+,NA	NA|551aa|up_9|NC_009523.1_2027358_2029011_+	NA	NA|275aa|up_8|NC_009523.1_2029047_2029872_+	pfam13699, DUF4157, Domain of unknown function (DUF4157)	NA|975aa|up_7|NC_009523.1_2030057_2032982_+	pfam13699, DUF4157, Domain of unknown function (DUF4157)	NA|139aa|up_6|NC_009523.1_2033007_2033424_+	NA	NA|321aa|up_5|NC_009523.1_2033430_2034393_+	pfam14065, DUF4255, Protein of unknown function (DUF4255)	NA|522aa|up_4|NC_009523.1_2034405_2035971_+	COG3497, COG3497, Phage tail sheath protein FI [General function prediction only]	NA|147aa|up_3|NC_009523.1_2036036_2036477_+	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19	NA|123aa|up_2|NC_009523.1_2036660_2037029_+	NA	NA|65aa|up_1|NC_009523.1_2037033_2037228_+	NA	NA|143aa|up_0|NC_009523.1_2037232_2037661_+	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19	NA|226aa|down_0|NC_009523.1_2040602_2041280_+	COG1652, XkdP, Uncharacterized protein containing LysM domain [Function unknown]	NA|590aa|down_1|NC_009523.1_2041272_2043042_+	COG3501, VgrG, Uncharacterized protein conserved in bacteria [Function unknown]	NA|97aa|down_2|NC_009523.1_2043055_2043346_+	cd14738, PAAR_2, proline-alanine-alanine-arginine (PAAR) domain	NA|131aa|down_3|NC_009523.1_2043352_2043745_+	pfam04965, GPW_gp25, Gene 25-like lysozyme	NA|677aa|down_4|NC_009523.1_2043757_2045788_+	TIGR02243, hypothetical_protein_SCD8A	NA|351aa|down_5|NC_009523.1_2045939_2046992_+	TIGR02242, putative_secreted_protein, phage tail protein domain	NA|536aa|down_6|NC_009523.1_2046984_2048592_+	pfam10119, MethyTransf_Reg, Predicted methyltransferase regulatory domain	NA|1054aa|down_7|NC_009523.1_2048871_2052033_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|1074aa|down_8|NC_009523.1_2052096_2055318_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|618aa|down_9|NC_009523.1_2055321_2057175_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	39	2110396-2110504	36	CRISPRCasFinder	no	csa3,Cas9_archaeal	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Unclear	GTTGCATACTGCCTTGCCACAAACAAGGGGGGAACACT	38	0	0	NA	NA	NA	1	1	Unclear	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|828aa|down_1|NC_009523.1_2113037_2115521_-	NA|130aa|up_9|NC_009523.1_2101512_2101902_+	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|353aa|up_8|NC_009523.1_2102089_2103148_-	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|80aa|up_7|NC_009523.1_2103269_2103509_-	pfam13192, Thioredoxin_3, Thioredoxin domain	csa3|126aa|up_6|NC_009523.1_2103523_2103901_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|325aa|up_5|NC_009523.1_2104089_2105064_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|232aa|up_4|NC_009523.1_2105060_2105756_-	pfam05076, SUFU, Suppressor of fused protein (SUFU)	NA|482aa|up_3|NC_009523.1_2105752_2107198_-	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|224aa|up_2|NC_009523.1_2107209_2107881_-	pfam05685, Uma2, Putative restriction endonuclease	NA|529aa|up_1|NC_009523.1_2107889_2109476_-	COG1316, LytR, Transcriptional regulator [Transcription]	Cas9_archaeal|169aa|up_0|NC_009523.1_2109876_2110383_+	COG1403, McrA, Restriction endonuclease [Defense mechanisms]	NA|648aa|down_0|NC_009523.1_2110546_2112490_-	COG3211, PhoX, Predicted phosphatase [General function prediction only]	NA|828aa|down_1|NC_009523.1_2113037_2115521_-	NA	NA|391aa|down_2|NC_009523.1_2115564_2116737_-	cd08194, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like	NA|378aa|down_3|NC_009523.1_2116826_2117960_-	cd03798, GT4_WlbH-like, Bordetella parapertussis WlbH and similar proteins	NA|212aa|down_4|NC_009523.1_2117976_2118612_-	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|418aa|down_5|NC_009523.1_2118855_2120109_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|124aa|down_6|NC_009523.1_2120115_2120487_+	PRK14678, PRK14678, hypothetical protein; Provisional	NA|183aa|down_7|NC_009523.1_2120543_2121092_+	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain	NA|139aa|down_8|NC_009523.1_2121139_2121556_+	cd04586, CBS_pair_BON_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain	NA|460aa|down_9|NC_009523.1_2121624_2123004_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	40	2227779-2227869	37	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	ATGGTCTTTGAATAAATAATCCG	23	1	8	2227802-2227846|2227802-2227846|2227802-2227846|2227802-2227846|2227802-2227846|2227802-2227846|2227802-2227846|2227802-2227846	NC_009523.1_17795-17751|NC_009523.1_487996-487952|NC_009523.1_1770094-1770050|NC_009523.1_2137804-2137760|NC_009523.1_3421946-3421902|NC_009523.1_5135540-5135496|NC_009523.1_723036-723080|NC_009523.1_5132769-5132813	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|308aa|down_3|NC_009523.1_2233743_2234667_-	NA|348aa|up_9|NC_009523.1_2218465_2219509_+	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only]	NA|209aa|up_8|NC_009523.1_2219548_2220175_+	COG2191, COG2191, Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]	NA|394aa|up_7|NC_009523.1_2220143_2221325_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|226aa|up_6|NC_009523.1_2221321_2221999_-	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]	NA|269aa|up_5|NC_009523.1_2221995_2222802_-	cd13539, PBP2_AvModA, Substrate binding domain of ModA/WtpA from Azotobacter vinelandii and its closest homologs;the type 2 periplasmic binding protein fold	NA|439aa|up_4|NC_009523.1_2222924_2224241_-	pfam04015, DUF362, Domain of unknown function (DUF362)	NA|225aa|up_3|NC_009523.1_2224524_2225199_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|247aa|up_2|NC_009523.1_2225229_2225970_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|217aa|up_1|NC_009523.1_2226013_2226664_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|289aa|up_0|NC_009523.1_2226670_2227537_-	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold	NA|448aa|down_0|NC_009523.1_2228168_2229512_-	pfam13204, DUF4038, Protein of unknown function (DUF4038)	NA|180aa|down_1|NC_009523.1_2231043_2231583_-	PRK00819, PRK00819, RNA 2'-phosphotransferase; Reviewed	NA|250aa|down_2|NC_009523.1_2231839_2232589_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|308aa|down_3|NC_009523.1_2233743_2234667_-	NA	NA|492aa|down_4|NC_009523.1_2235557_2237033_-	TIGR02734, Phytoene_desaturase_lycopene-forming, phytoene desaturase	NA|515aa|down_5|NC_009523.1_2237299_2238844_+	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|288aa|down_6|NC_009523.1_2239291_2240155_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|214aa|down_7|NC_009523.1_2240421_2241063_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|327aa|down_8|NC_009523.1_2241046_2242027_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|317aa|down_9|NC_009523.1_2242031_2242982_-	cd13614, PBP2_QAT_like, Substrate-binding domain of quaternary amine ABC-type transporter; the type 2 periplasmic-binding protein fold
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	41	2230854-2230945	38	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GGCAAAGCCCGCCTGCGCGGGCTA	24	1	1	2230878-2230921	NC_009523.1_5637393-5637436	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|308aa|down_2|NC_009523.1_2233743_2234667_-	NA|209aa|up_9|NC_009523.1_2219548_2220175_+	COG2191, COG2191, Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]	NA|394aa|up_8|NC_009523.1_2220143_2221325_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|226aa|up_7|NC_009523.1_2221321_2221999_-	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]	NA|269aa|up_6|NC_009523.1_2221995_2222802_-	cd13539, PBP2_AvModA, Substrate binding domain of ModA/WtpA from Azotobacter vinelandii and its closest homologs;the type 2 periplasmic binding protein fold	NA|439aa|up_5|NC_009523.1_2222924_2224241_-	pfam04015, DUF362, Domain of unknown function (DUF362)	NA|225aa|up_4|NC_009523.1_2224524_2225199_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|247aa|up_3|NC_009523.1_2225229_2225970_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|217aa|up_2|NC_009523.1_2226013_2226664_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|289aa|up_1|NC_009523.1_2226670_2227537_-	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold	NA|448aa|up_0|NC_009523.1_2228168_2229512_-	pfam13204, DUF4038, Protein of unknown function (DUF4038)	NA|180aa|down_0|NC_009523.1_2231043_2231583_-	PRK00819, PRK00819, RNA 2'-phosphotransferase; Reviewed	NA|250aa|down_1|NC_009523.1_2231839_2232589_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|308aa|down_2|NC_009523.1_2233743_2234667_-	NA	NA|492aa|down_3|NC_009523.1_2235557_2237033_-	TIGR02734, Phytoene_desaturase_lycopene-forming, phytoene desaturase	NA|515aa|down_4|NC_009523.1_2237299_2238844_+	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|288aa|down_5|NC_009523.1_2239291_2240155_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|214aa|down_6|NC_009523.1_2240421_2241063_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|327aa|down_7|NC_009523.1_2241046_2242027_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|317aa|down_8|NC_009523.1_2242031_2242982_-	cd13614, PBP2_QAT_like, Substrate-binding domain of quaternary amine ABC-type transporter; the type 2 periplasmic-binding protein fold	NA|218aa|down_9|NC_009523.1_2243012_2243666_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	42	2306973-2307084	39	CRISPRCasFinder	no	csx1,csm3gr7,csx19,csx10gr5,cas10,csx3,cas8b2,cas7,cas5,cas3,cas6,cas1,cas2,cas4	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Type III-A,Type III-C,Type III-D,,Type III-B	GTGAAATTGCGACGGCGGGGGTGTCTTATCTGAGAAAG	38	0	0	NA	NA	NA	1	1	,TypeIII-A,TypeIII-C,TypeIII-D,TypeIII-B	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA	csx1|53aa|up_9|NC_009523.1_2291807_2291966_-	cd09732, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	csm3gr7|713aa|up_8|NC_009523.1_2291999_2294138_-	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	csm3gr7|712aa|up_7|NC_009523.1_2294142_2296278_-	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	csx19|196aa|up_6|NC_009523.1_2296279_2296867_-	TIGR03984, hypothetical_protein_FrEUN1fDRAFT_5778, CRISPR-associated protein, TIGR03984 family	csm3gr7|595aa|up_5|NC_009523.1_2296863_2298648_-	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csx10gr5|822aa|up_4|NC_009523.1_2298650_2301116_-	cd09700, Csx10, CRISPR/Cas system-associated RAMP superfamily protein Csx10	cas10|546aa|up_3|NC_009523.1_2301112_2302750_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	csx1|586aa|up_2|NC_009523.1_2302771_2304529_-	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	csx1|298aa|up_1|NC_009523.1_2304702_2305596_-	pfam09623, Cas_NE0113, CRISPR-associated protein NE0113 (Cas_NE0113)	csx3|398aa|up_0|NC_009523.1_2305634_2306828_+	cd09740, Csx3_III-U, CRISPR/Cas system-associated protein Csx3	cas8b2|498aa|down_0|NC_009523.1_2307163_2308657_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|364aa|down_1|NC_009523.1_2308675_2309767_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|246aa|down_2|NC_009523.1_2310195_2310933_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|784aa|down_3|NC_009523.1_2310910_2313262_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas6|320aa|down_4|NC_009523.1_2313296_2314256_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	cas1|338aa|down_5|NC_009523.1_2314535_2315549_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|85aa|down_6|NC_009523.1_2315553_2315808_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas4|199aa|down_7|NC_009523.1_2315804_2316401_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|353aa|down_8|NC_009523.1_2320561_2321619_-	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease	NA|78aa|down_9|NC_009523.1_2326206_2326440_+	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	43	2316716-2320559	3,40,4,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	csm3gr7,csx10gr5,cas10,csx1,csx3,cas8b2,cas7,cas5,cas3,cas6,cas1,cas2,cas4	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Type III-A,Type III-C,Type III-D,,Type III-B	ATTTCGGCAATTTCGACTCGTTGAAGAGTACTGAAAC,ATTTCGGCAATTTCGACTCGTTGAAGAGTACTGAAAC,ATTTCGGCAATTTCGACTCGTTGAAGAGTACTGAAAC,ATTTCGGCAATTTCGACTCGTTGAAGAGTACTGAAACG	37,37,37,38	0	0	NA	NA	NA:NA:NA:NA	49,52,52,49	52	,TypeIII-A,TypeIII-C,TypeIII-D,TypeIII-B	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|231aa|down_6|NC_009523.1_2330882_2331575_-	csx1|298aa|up_9|NC_009523.1_2304702_2305596_-	pfam09623, Cas_NE0113, CRISPR-associated protein NE0113 (Cas_NE0113)	csx3|398aa|up_8|NC_009523.1_2305634_2306828_+	cd09740, Csx3_III-U, CRISPR/Cas system-associated protein Csx3	cas8b2|498aa|up_7|NC_009523.1_2307163_2308657_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|364aa|up_6|NC_009523.1_2308675_2309767_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|246aa|up_5|NC_009523.1_2310195_2310933_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|784aa|up_4|NC_009523.1_2310910_2313262_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas6|320aa|up_3|NC_009523.1_2313296_2314256_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	cas1|338aa|up_2|NC_009523.1_2314535_2315549_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|85aa|up_1|NC_009523.1_2315553_2315808_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas4|199aa|up_0|NC_009523.1_2315804_2316401_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|353aa|down_0|NC_009523.1_2320561_2321619_-	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease	NA|78aa|down_1|NC_009523.1_2326206_2326440_+	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|63aa|down_2|NC_009523.1_2326436_2326625_+	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|223aa|down_3|NC_009523.1_2327382_2328051_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|478aa|down_4|NC_009523.1_2328059_2329493_-	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|459aa|down_5|NC_009523.1_2329509_2330886_-	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|231aa|down_6|NC_009523.1_2330882_2331575_-	NA	NA|286aa|down_7|NC_009523.1_2331721_2332579_-	sd00006, TPR, Tetratricopeptide repeat	NA|280aa|down_8|NC_009523.1_2332586_2333426_-	pfam02517, Abi, CAAX protease self-immunity	NA|477aa|down_9|NC_009523.1_2333425_2334856_-	PRK14338, PRK14338, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	44	2321726-2325131	5,41,5	PILER-CR,CRISPRCasFinder,CRT	no	csx1,csx3,cas8b2,cas7,cas5,cas3,cas6,cas1,cas2,cas4	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Unclear	ATTTCAGCAATTTCGGCTCGTTGAAGAGCACTGAAAC,ATTTCGGCAATTTCGACTCGTTGAAGAGTACTGAAAC,ATTTCNGCAATTTCGNCTCGTTGAAGAGNACTGAAAC	37,37,37	0	0	NA	NA	NA:NA:NA	46,46,46	46	Unclear	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|231aa|down_5|NC_009523.1_2330882_2331575_-	csx3|398aa|up_9|NC_009523.1_2305634_2306828_+	cd09740, Csx3_III-U, CRISPR/Cas system-associated protein Csx3	cas8b2|498aa|up_8|NC_009523.1_2307163_2308657_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|364aa|up_7|NC_009523.1_2308675_2309767_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|246aa|up_6|NC_009523.1_2310195_2310933_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|784aa|up_5|NC_009523.1_2310910_2313262_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas6|320aa|up_4|NC_009523.1_2313296_2314256_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	cas1|338aa|up_3|NC_009523.1_2314535_2315549_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|85aa|up_2|NC_009523.1_2315553_2315808_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas4|199aa|up_1|NC_009523.1_2315804_2316401_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|353aa|up_0|NC_009523.1_2320561_2321619_-	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease	NA|78aa|down_0|NC_009523.1_2326206_2326440_+	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|63aa|down_1|NC_009523.1_2326436_2326625_+	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|223aa|down_2|NC_009523.1_2327382_2328051_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|478aa|down_3|NC_009523.1_2328059_2329493_-	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|459aa|down_4|NC_009523.1_2329509_2330886_-	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|231aa|down_5|NC_009523.1_2330882_2331575_-	NA	NA|286aa|down_6|NC_009523.1_2331721_2332579_-	sd00006, TPR, Tetratricopeptide repeat	NA|280aa|down_7|NC_009523.1_2332586_2333426_-	pfam02517, Abi, CAAX protease self-immunity	NA|477aa|down_8|NC_009523.1_2333425_2334856_-	PRK14338, PRK14338, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|1423aa|down_9|NC_009523.1_2335148_2339417_+	NF033451, BREX_2_MTaseX, BREX-2 system adenine-specific DNA-methyltransferase PglX
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	45	2362722-2362803	42	CRISPRCasFinder	no	DinG	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Type IV-A	CCTTTCATTCCTGGCGTTGAACGTTC	26	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|103aa|up_7|NC_009523.1_2353041_2353350_-,NA|110aa|down_2|NC_009523.1_2367914_2368244_-,NA|323aa|down_9|NC_009523.1_2377313_2378282_-	NA|205aa|up_9|NC_009523.1_2351971_2352586_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|134aa|up_8|NC_009523.1_2352582_2352984_-	cd04584, CBS_pair_AcuB_like, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the ACT domain	NA|103aa|up_7|NC_009523.1_2353041_2353350_-	NA	NA|489aa|up_6|NC_009523.1_2353525_2354992_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|262aa|up_5|NC_009523.1_2355565_2356351_+	cd00569, HTH_Hin_like, Helix-turn-helix domain of Hin and related proteins	DinG|957aa|up_4|NC_009523.1_2356598_2359469_+	PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	NA|102aa|up_3|NC_009523.1_2359530_2359836_-	pfam10387, DUF2442, Protein of unknown function (DUF2442)	NA|77aa|up_2|NC_009523.1_2359847_2360078_-	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|378aa|up_1|NC_009523.1_2360266_2361400_-	TIGR02030, Magnesium-chelatase_subunit_ChlI, magnesium chelatase ATPase subunit I	NA|434aa|up_0|NC_009523.1_2361411_2362713_-	cd06176, MFS_BCD_PucC-like, Bacteriochlorophyll delivery (BCD) family, also called PucC family, of the Major Facilitator Superfamily	NA|1297aa|down_0|NC_009523.1_2362838_2366729_-	PRK12493, PRK12493, magnesium chelatase subunit H; Provisional	NA|372aa|down_1|NC_009523.1_2366737_2367853_-	PRK13654, PRK13654, magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional	NA|110aa|down_2|NC_009523.1_2367914_2368244_-	NA	NA|238aa|down_3|NC_009523.1_2368457_2369171_-	PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated	NA|274aa|down_4|NC_009523.1_2369161_2369983_-	PRK13185, chlL, protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional	NA|569aa|down_5|NC_009523.1_2370003_2371710_-	PRK02910, PRK02910, ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit B	NA|416aa|down_6|NC_009523.1_2371874_2373122_-	PRK02842, PRK02842, ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit N	NA|267aa|down_7|NC_009523.1_2373264_2374065_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|458aa|down_8|NC_009523.1_2374081_2375455_-	cd06176, MFS_BCD_PucC-like, Bacteriochlorophyll delivery (BCD) family, also called PucC family, of the Major Facilitator Superfamily	NA|323aa|down_9|NC_009523.1_2377313_2378282_-	NA
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	46	2382937-2383027	43	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	TGGAACCGACCCGTCGCTCGCGGTTGGTAT	30	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|323aa|up_3|NC_009523.1_2377313_2378282_-,NA|141aa|down_2|NC_009523.1_2385966_2386389_+	NA|238aa|up_9|NC_009523.1_2368457_2369171_-	PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated	NA|274aa|up_8|NC_009523.1_2369161_2369983_-	PRK13185, chlL, protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional	NA|569aa|up_7|NC_009523.1_2370003_2371710_-	PRK02910, PRK02910, ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit B	NA|416aa|up_6|NC_009523.1_2371874_2373122_-	PRK02842, PRK02842, ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit N	NA|267aa|up_5|NC_009523.1_2373264_2374065_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|458aa|up_4|NC_009523.1_2374081_2375455_-	cd06176, MFS_BCD_PucC-like, Bacteriochlorophyll delivery (BCD) family, also called PucC family, of the Major Facilitator Superfamily	NA|323aa|up_3|NC_009523.1_2377313_2378282_-	NA	NA|290aa|up_2|NC_009523.1_2378365_2379235_-	PLN02824, PLN02824, hydrolase, alpha/beta fold family protein	NA|568aa|up_1|NC_009523.1_2379368_2381072_+	TIGR02800, Protein_TolB, tol-pal system beta propeller repeat protein TolB	NA|596aa|up_0|NC_009523.1_2381102_2382890_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|390aa|down_0|NC_009523.1_2383212_2384382_+	TIGR00832, Uncharacterized_transporter_slr0944, arsenical-resistance protein	NA|275aa|down_1|NC_009523.1_2384466_2385291_-	pfam02517, Abi, CAAX protease self-immunity	NA|141aa|down_2|NC_009523.1_2385966_2386389_+	NA	NA|268aa|down_3|NC_009523.1_2386452_2387256_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|222aa|down_4|NC_009523.1_2387266_2387932_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|164aa|down_5|NC_009523.1_2387928_2388420_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|354aa|down_6|NC_009523.1_2388474_2389536_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|175aa|down_7|NC_009523.1_2389532_2390057_-	pfam09512, ThiW, Thiamine-precursor transporter protein (ThiW)	NA|271aa|down_8|NC_009523.1_2390542_2391355_-	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|237aa|down_9|NC_009523.1_2391397_2392108_-	PRK00043, thiE, thiamine phosphate synthase
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	47	2390322-2390489	44	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	CAACGTACAACGTGCCACAACCTCCCCACCTTCAACCTTCAACGT	45	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|141aa|up_5|NC_009523.1_2385966_2386389_+,NA	NA|568aa|up_9|NC_009523.1_2379368_2381072_+	TIGR02800, Protein_TolB, tol-pal system beta propeller repeat protein TolB	NA|596aa|up_8|NC_009523.1_2381102_2382890_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|390aa|up_7|NC_009523.1_2383212_2384382_+	TIGR00832, Uncharacterized_transporter_slr0944, arsenical-resistance protein	NA|275aa|up_6|NC_009523.1_2384466_2385291_-	pfam02517, Abi, CAAX protease self-immunity	NA|141aa|up_5|NC_009523.1_2385966_2386389_+	NA	NA|268aa|up_4|NC_009523.1_2386452_2387256_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|222aa|up_3|NC_009523.1_2387266_2387932_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|164aa|up_2|NC_009523.1_2387928_2388420_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|354aa|up_1|NC_009523.1_2388474_2389536_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|175aa|up_0|NC_009523.1_2389532_2390057_-	pfam09512, ThiW, Thiamine-precursor transporter protein (ThiW)	NA|271aa|down_0|NC_009523.1_2390542_2391355_-	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|237aa|down_1|NC_009523.1_2391397_2392108_-	PRK00043, thiE, thiamine phosphate synthase	NA|297aa|down_2|NC_009523.1_2392511_2393402_-	cd07336, M48B_HtpX_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase	NA|150aa|down_3|NC_009523.1_2393562_2394012_-	cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)	NA|460aa|down_4|NC_009523.1_2394104_2395484_-	PRK10885, cca, multifunctional CCA addition/repair protein	NA|542aa|down_5|NC_009523.1_2395732_2397358_+	cd11331, AmyAc_OligoGlu_like, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins	NA|463aa|down_6|NC_009523.1_2397568_2398957_+	pfam08378, NERD, Nuclease-related domain	NA|473aa|down_7|NC_009523.1_2399751_2401170_-	TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase	NA|328aa|down_8|NC_009523.1_2401676_2402660_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|315aa|down_9|NC_009523.1_2402656_2403601_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	48	2403814-2403905	45	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	ATAGCCCGCGCAGGCGGGCTTTGC	24	1	6	2403838-2403881|2403838-2403881|2403838-2403881|2403838-2403881|2403838-2403881|2403838-2403881	NC_009523.1_2327145-2327102|NC_009523.1_1483976-1483933|NC_009523.1_1857624-1857581|NC_009523.1_771745-771788|NC_009523.1_1009282-1009325|NC_009523.1_4366138-4366095	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|61aa|down_0|NC_009523.1_2404042_2404225_+,NA|296aa|down_5|NC_009523.1_2408082_2408970_+,NA|191aa|down_6|NC_009523.1_2408979_2409552_+	NA|271aa|up_9|NC_009523.1_2390542_2391355_-	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|237aa|up_8|NC_009523.1_2391397_2392108_-	PRK00043, thiE, thiamine phosphate synthase	NA|297aa|up_7|NC_009523.1_2392511_2393402_-	cd07336, M48B_HtpX_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase	NA|150aa|up_6|NC_009523.1_2393562_2394012_-	cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)	NA|460aa|up_5|NC_009523.1_2394104_2395484_-	PRK10885, cca, multifunctional CCA addition/repair protein	NA|542aa|up_4|NC_009523.1_2395732_2397358_+	cd11331, AmyAc_OligoGlu_like, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins	NA|463aa|up_3|NC_009523.1_2397568_2398957_+	pfam08378, NERD, Nuclease-related domain	NA|473aa|up_2|NC_009523.1_2399751_2401170_-	TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase	NA|328aa|up_1|NC_009523.1_2401676_2402660_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|315aa|up_0|NC_009523.1_2402656_2403601_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|61aa|down_0|NC_009523.1_2404042_2404225_+	NA	NA|177aa|down_1|NC_009523.1_2404314_2404845_-	pfam09843, DUF2070, Predicted membrane protein (DUF2070)	NA|470aa|down_2|NC_009523.1_2405091_2406501_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|199aa|down_3|NC_009523.1_2406585_2407182_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|86aa|down_4|NC_009523.1_2407362_2407620_+	pfam18480, DUF5615, Domain of unknown function (DUF5615)	NA|296aa|down_5|NC_009523.1_2408082_2408970_+	NA	NA|191aa|down_6|NC_009523.1_2408979_2409552_+	NA	NA|73aa|down_7|NC_009523.1_2410123_2410342_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|274aa|down_8|NC_009523.1_2410423_2411245_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|272aa|down_9|NC_009523.1_2411294_2412110_+	pfam13485, Peptidase_MA_2, Peptidase MA superfamily
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	49	2427392-2436730	6,6,46	CRT,PILER-CR,CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GTTTCAGTGCTCTTCAGCGAGCCGAAAATTCCTCAAT,ATTGAGGAATTTTCGGCTCGCTGAAGAGCACTGAAAC,GTTTCAGTGCTCTTCAGCGAGCCGAAAATTCCTCAAT	37,37,37	0	0	NA	NA	NA:NA:NA	126,124,124	126	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA	NA|856aa|up_9|NC_009523.1_2412155_2414723_+	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|734aa|up_8|NC_009523.1_2414745_2416947_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|531aa|up_7|NC_009523.1_2417201_2418794_+	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]	NA|477aa|up_6|NC_009523.1_2418827_2420258_+	sd00006, TPR, Tetratricopeptide repeat	NA|359aa|up_5|NC_009523.1_2420274_2421351_+	PRK05382, PRK05382, chorismate synthase; Validated	NA|658aa|up_4|NC_009523.1_2421553_2423527_+	PRK03584, PRK03584, acetoacetate--CoA ligase	NA|206aa|up_3|NC_009523.1_2423530_2424148_+	COG0703, AroK, Shikimate kinase [Amino acid transport and metabolism]	NA|134aa|up_2|NC_009523.1_2424234_2424636_-	pfam00072, Response_reg, Response regulator receiver domain	NA|183aa|up_1|NC_009523.1_2425493_2426042_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|345aa|up_0|NC_009523.1_2426169_2427204_-	COG5659, COG5659, FOG: Transposase [DNA replication, recombination, and repair]	NA|368aa|down_0|NC_009523.1_2437020_2438124_-	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional	NA|163aa|down_1|NC_009523.1_2438136_2438625_-	pfam03350, UPF0114, Uncharacterized protein family, UPF0114	NA|205aa|down_2|NC_009523.1_2438631_2439246_-	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|475aa|down_3|NC_009523.1_2440365_2441790_-	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|309aa|down_4|NC_009523.1_2441846_2442773_-	PRK06606, PRK06606, branched-chain amino acid transaminase	NA|541aa|down_5|NC_009523.1_2442951_2444574_-	PRK12344, PRK12344, putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional	NA|280aa|down_6|NC_009523.1_2444613_2445453_-	COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism]	NA|557aa|down_7|NC_009523.1_2445510_2447181_-	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated	NA|341aa|down_8|NC_009523.1_2447208_2448231_-	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|181aa|down_9|NC_009523.1_2448322_2448865_-	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	50	2491828-2491926	47	CRISPRCasFinder	no	DEDDh	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Unclear	GGCGAAGCCCGCCTGCGCGGGCTAGAGCGGA	31	1	3	2491859-2491895|2491859-2491895|2491859-2491895	NC_009523.1_336201-336237|NC_009523.1_579771-579735|NC_009523.1_3639475-3639511	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|292aa|up_3|NC_009523.1_2486286_2487162_+,NA|71aa|down_0|NC_009523.1_2492448_2492661_+,NA|76aa|down_5|NC_009523.1_2502737_2502965_+	NA|604aa|up_9|NC_009523.1_2476725_2478537_-	cd09607, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|418aa|up_8|NC_009523.1_2478660_2479914_-	sd00006, TPR, Tetratricopeptide repeat	NA|246aa|up_7|NC_009523.1_2480464_2481202_-	PRK00173, rph, ribonuclease PH; Reviewed	NA|183aa|up_6|NC_009523.1_2481278_2481827_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|651aa|up_5|NC_009523.1_2481929_2483882_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|640aa|up_4|NC_009523.1_2483933_2485853_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|292aa|up_3|NC_009523.1_2486286_2487162_+	NA	DEDDh|231aa|up_2|NC_009523.1_2487091_2487784_-	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|624aa|up_1|NC_009523.1_2487794_2489666_-	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]	NA|573aa|up_0|NC_009523.1_2489677_2491396_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|71aa|down_0|NC_009523.1_2492448_2492661_+	NA	NA|1503aa|down_1|NC_009523.1_2492924_2497433_+	sd00006, TPR, Tetratricopeptide repeat	NA|529aa|down_2|NC_009523.1_2498415_2500002_+	pfam12770, CHAT, CHAT domain	NA|98aa|down_3|NC_009523.1_2500065_2500359_+	COG5304, COG5304, Uncharacterized protein conserved in bacteria [Function unknown]	NA|355aa|down_4|NC_009523.1_2500831_2501896_+	pfam09925, DUF2157, Predicted membrane protein (DUF2157)	NA|76aa|down_5|NC_009523.1_2502737_2502965_+	NA	NA|86aa|down_6|NC_009523.1_2502954_2503212_+	cd18753, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|281aa|down_7|NC_009523.1_2503127_2503970_-	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|237aa|down_8|NC_009523.1_2503974_2504685_-	cd00475, Cis_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases	NA|186aa|down_9|NC_009523.1_2504803_2505361_-	PRK00083, frr, ribosome recycling factor; Reviewed
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	51	2598414-2598517	48	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GAAGCGCAACTGGCGCAGGCGCGGGC	26	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA	NA|521aa|up_9|NC_009523.1_2587724_2589287_+	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD	NA|127aa|up_8|NC_009523.1_2589572_2589953_+	PRK09581, pleD, response regulator PleD; Reviewed	NA|136aa|up_7|NC_009523.1_2589985_2590393_-	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|88aa|up_6|NC_009523.1_2590401_2590665_-	PRK12599, PRK12599, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|157aa|up_5|NC_009523.1_2590664_2591135_-	PRK12651, PRK12651, Na+/H+ antiporter subunit E	NA|499aa|up_4|NC_009523.1_2591147_2592644_-	PRK12663, PRK12663, Na+/H+ antiporter subunit D	NA|116aa|up_3|NC_009523.1_2592693_2593041_-	PRK12659, PRK12659, Na+/H+ antiporter subunit C	NA|139aa|up_2|NC_009523.1_2593045_2593462_-	PRK12509, PRK12509, Na+/H+ antiporter subunit B	NA|794aa|up_1|NC_009523.1_2593473_2595855_-	PRK12647, PRK12647, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|210aa|up_0|NC_009523.1_2596623_2597253_+	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|257aa|down_0|NC_009523.1_2599041_2599812_+	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|312aa|down_1|NC_009523.1_2599808_2600744_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|292aa|down_2|NC_009523.1_2600740_2601616_+	cd00293, USP_Like, Usp: Universal stress protein family	NA|326aa|down_3|NC_009523.1_2601728_2602706_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|368aa|down_4|NC_009523.1_2603006_2604110_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|357aa|down_5|NC_009523.1_2604125_2605196_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|150aa|down_6|NC_009523.1_2605351_2605801_+	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]	NA|115aa|down_7|NC_009523.1_2605880_2606225_+	cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2	NA|151aa|down_8|NC_009523.1_2606185_2606638_+	pfam03745, DUF309, Domain of unknown function (DUF309)	NA|277aa|down_9|NC_009523.1_2606630_2607461_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	52	2630273-2630419	49	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GATAGCCGATAGCCGATAGCCGATAGCCGATAG	33	1	10	2630306-2630328|2630306-2630328|2630306-2630328|2630306-2630328|2630306-2630328|2630306-2630328|2630306-2630328|2630306-2630328|2630306-2630328|2630306-2630328	NC_009523.1_2892212-2892190|NC_009523.1_5328194-5328172|NC_009523.1_450686-450708|NC_009523.1_1213606-1213628|NC_009523.1_5469400-5469422|NC_009523.1_185557-185579|NC_009523.1_268908-268886|NC_009523.1_1213613-1213635|NC_009523.1_4769282-4769260|NC_009523.1_5328314-5328292	NA	2	2	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|135aa|up_4|NC_009523.1_2620324_2620729_-,NA|83aa|down_2|NC_009523.1_2632950_2633199_+,NA|148aa|down_3|NC_009523.1_2633261_2633705_+,NA|64aa|down_8|NC_009523.1_2637947_2638139_-	NA|266aa|up_9|NC_009523.1_2616344_2617142_-	cd04502, SGNH_hydrolase_like_7, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	NA|255aa|up_8|NC_009523.1_2616958_2617723_+	pfam02190, LON_substr_bdg, ATP-dependent protease La (LON) substrate-binding domain	NA|469aa|up_7|NC_009523.1_2617707_2619114_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|134aa|up_6|NC_009523.1_2619213_2619615_+	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|191aa|up_5|NC_009523.1_2619717_2620290_+	pfam09988, DUF2227, Uncharacterized metal-binding protein (DUF2227)	NA|135aa|up_4|NC_009523.1_2620324_2620729_-	NA	NA|541aa|up_3|NC_009523.1_2620790_2622413_+	TIGR02800, Protein_TolB, tol-pal system beta propeller repeat protein TolB	NA|160aa|up_2|NC_009523.1_2624146_2624626_-	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]	NA|513aa|up_1|NC_009523.1_2624716_2626255_+	PRK00074, guaA, GMP synthase; Reviewed	NA|277aa|up_0|NC_009523.1_2626316_2627147_+	pfam10114, PocR, Sensory domain found in PocR	NA|315aa|down_0|NC_009523.1_2630753_2631698_+	COG1577, ERG12, Mevalonate kinase [Lipid metabolism]	NA|374aa|down_1|NC_009523.1_2631810_2632932_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|83aa|down_2|NC_009523.1_2632950_2633199_+	NA	NA|148aa|down_3|NC_009523.1_2633261_2633705_+	NA	NA|314aa|down_4|NC_009523.1_2633865_2634807_+	pfam07136, DUF1385, Protein of unknown function (DUF1385)	NA|274aa|down_5|NC_009523.1_2634836_2635658_+	pfam14332, DUF4388, Domain of unknown function (DUF4388)	NA|177aa|down_6|NC_009523.1_2635684_2636215_+	COG2229, COG2229, Predicted GTPase [General function prediction only]	NA|309aa|down_7|NC_009523.1_2636546_2637473_+	cd07726, ST1585-like_MBL-fold, uncharacterized subgroup which includes Sulfolobus tokodaii ST1585 protein; MBL-fold metallo hydrolase domain	NA|64aa|down_8|NC_009523.1_2637947_2638139_-	NA	NA|502aa|down_9|NC_009523.1_2638174_2639680_+	TIGR03279, cyano_FeS_chp, putative radical SAM enzyme, TIGR03279 family
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	53	2904625-2904730	50	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GAGGGGGATCGAACCCCTGACCTC	24	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|46aa|up_9|NC_009523.1_2891510_2891648_-,NA|391aa|down_8|NC_009523.1_2916866_2918039_-	NA|46aa|up_9|NC_009523.1_2891510_2891648_-	NA	NA|242aa|up_8|NC_009523.1_2892276_2893002_-	cd07432, PHP_HisPPase, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase	NA|382aa|up_7|NC_009523.1_2892998_2894144_-	cd03814, GT4-like, glycosyltransferase family 4 proteins	NA|227aa|up_6|NC_009523.1_2894304_2894985_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|237aa|up_5|NC_009523.1_2894981_2895692_-	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan	NA|127aa|up_4|NC_009523.1_2895796_2896177_-	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|922aa|up_3|NC_009523.1_2896426_2899192_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|851aa|up_2|NC_009523.1_2899204_2901757_+	cd06267, PBP1_LacI_sugar_binding-like, ligand binding domain of the LacI transcriptional regulator family belonging to the type 1 periplasmic-binding fold protein superfamily	NA|353aa|up_1|NC_009523.1_2901674_2902732_-	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease	NA|203aa|up_0|NC_009523.1_2903908_2904517_+	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains	NA|546aa|down_0|NC_009523.1_2904902_2906540_+	TIGR04247, nitrous_oxide_maturation_protein_NosD, nitrous oxide reductase family maturation protein NosD	NA|368aa|down_1|NC_009523.1_2906585_2907689_+	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|195aa|down_2|NC_009523.1_2907837_2908422_+	pfam04024, PspC, PspC domain	NA|400aa|down_3|NC_009523.1_2908429_2909629_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|266aa|down_4|NC_009523.1_2909745_2910543_-	pfam17248, DUF5317, Family of unknown function (DUF5317)	NA|1071aa|down_5|NC_009523.1_2911203_2914416_-	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]	NA|284aa|down_6|NC_009523.1_2914604_2915456_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|454aa|down_7|NC_009523.1_2915483_2916845_+	pfam07593, UnbV_ASPIC, ASPIC and UnbV	NA|391aa|down_8|NC_009523.1_2916866_2918039_-	NA	NA|794aa|down_9|NC_009523.1_2918292_2920674_-	pfam04151, PPC, Bacterial pre-peptidase C-terminal domain
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	54	3064486-3064577	51	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	AGCCCGCGCAGGCGGGCTTCGCCT	24	1	11	3064510-3064553|3064510-3064553|3064510-3064553|3064510-3064553|3064510-3064553|3064510-3064553|3064510-3064553|3064510-3064553|3064510-3064553|3064510-3064553|3064510-3064553	NC_009523.1_335925-335882|NC_009523.1_4126101-4126058|NC_009523.1_268592-268549|NC_009523.1_268660-268617|NC_009523.1_1257862-1257905|NC_009523.1_1462438-1462395|NC_009523.1_1827436-1827479|NC_009523.1_3652891-3652934|NC_009523.1_3687088-3687131|NC_009523.1_3852381-3852424|NC_009523.1_4699922-4699965	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|72aa|up_4|NC_009523.1_3060867_3061083_+,NA|307aa|down_3|NC_009523.1_3070057_3070978_+	NA|260aa|up_9|NC_009523.1_3054702_3055482_-	pfam14344, DUF4397, Domain of unknown function (DUF4397)	NA|346aa|up_8|NC_009523.1_3055622_3056660_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|402aa|up_7|NC_009523.1_3056662_3057868_-	COG4552, Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]	NA|368aa|up_6|NC_009523.1_3057864_3058968_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|344aa|up_5|NC_009523.1_3059314_3060346_+	TIGR03448, mycothiol_MshD, mycothiol synthase	NA|72aa|up_4|NC_009523.1_3060867_3061083_+	NA	NA|300aa|up_3|NC_009523.1_3061121_3062021_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|301aa|up_2|NC_009523.1_3062055_3062958_+	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|204aa|up_1|NC_009523.1_3062988_3063600_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|287aa|up_0|NC_009523.1_3063596_3064457_+	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|454aa|down_0|NC_009523.1_3064771_3066133_+	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain	NA|377aa|down_1|NC_009523.1_3066178_3067309_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|412aa|down_2|NC_009523.1_3067322_3068558_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|307aa|down_3|NC_009523.1_3070057_3070978_+	NA	NA|729aa|down_4|NC_009523.1_3071102_3073289_+	COG5322, COG5322, Predicted dehydrogenase [General function prediction only]	NA|139aa|down_5|NC_009523.1_3073293_3073710_+	COG3474, COG3474, Cytochrome c2 [Energy production and conversion]	NA|354aa|down_6|NC_009523.1_3073748_3074810_-	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|255aa|down_7|NC_009523.1_3074817_3075582_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|204aa|down_8|NC_009523.1_3075663_3076275_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|328aa|down_9|NC_009523.1_3076455_3077439_+	pfam16697, Yop-YscD_cpl, Inner membrane component of T3SS, cytoplasmic domain
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	55	3070215-3070324	52	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GGGCGTGCCGCCGGGCGGCCACCTTCGTGGACG	33	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|72aa|up_7|NC_009523.1_3060867_3061083_+,NA	NA|368aa|up_9|NC_009523.1_3057864_3058968_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|344aa|up_8|NC_009523.1_3059314_3060346_+	TIGR03448, mycothiol_MshD, mycothiol synthase	NA|72aa|up_7|NC_009523.1_3060867_3061083_+	NA	NA|300aa|up_6|NC_009523.1_3061121_3062021_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|301aa|up_5|NC_009523.1_3062055_3062958_+	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|204aa|up_4|NC_009523.1_3062988_3063600_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|287aa|up_3|NC_009523.1_3063596_3064457_+	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|454aa|up_2|NC_009523.1_3064771_3066133_+	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain	NA|377aa|up_1|NC_009523.1_3066178_3067309_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|412aa|up_0|NC_009523.1_3067322_3068558_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|729aa|down_0|NC_009523.1_3071102_3073289_+	COG5322, COG5322, Predicted dehydrogenase [General function prediction only]	NA|139aa|down_1|NC_009523.1_3073293_3073710_+	COG3474, COG3474, Cytochrome c2 [Energy production and conversion]	NA|354aa|down_2|NC_009523.1_3073748_3074810_-	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|255aa|down_3|NC_009523.1_3074817_3075582_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|204aa|down_4|NC_009523.1_3075663_3076275_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|328aa|down_5|NC_009523.1_3076455_3077439_+	pfam16697, Yop-YscD_cpl, Inner membrane component of T3SS, cytoplasmic domain	NA|143aa|down_6|NC_009523.1_3077435_3077864_+	pfam01878, EVE, EVE domain	NA|88aa|down_7|NC_009523.1_3079880_3080144_+	pfam04255, DUF433, Protein of unknown function (DUF433)	NA|125aa|down_8|NC_009523.1_3080335_3080710_+	PRK14215, PRK14215, fluoride efflux transporter CrcB	NA|428aa|down_9|NC_009523.1_3080725_3082009_+	pfam02641, DUF190, Uncharacterized ACR, COG1993
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	56	3124842-3124988	53	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GCCCGCGCAGGCGGGCTTCGCCTTG	25	0	0	NA	NA	NA	2	2	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|60aa|up_9|NC_009523.1_3112285_3112465_-,NA|114aa|up_4|NC_009523.1_3117480_3117822_+,NA|141aa|up_2|NC_009523.1_3118592_3119015_+,NA|131aa|down_2|NC_009523.1_3127667_3128060_+,NA|149aa|down_5|NC_009523.1_3128772_3129219_+,NA|52aa|down_7|NC_009523.1_3130190_3130346_+	NA|60aa|up_9|NC_009523.1_3112285_3112465_-	NA	NA|305aa|up_8|NC_009523.1_3112648_3113563_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|326aa|up_7|NC_009523.1_3113568_3114546_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|453aa|up_6|NC_009523.1_3114573_3115932_+	cd01465, vWA_subgroup, VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|407aa|up_5|NC_009523.1_3115952_3117173_+	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|114aa|up_4|NC_009523.1_3117480_3117822_+	NA	NA|220aa|up_3|NC_009523.1_3117818_3118478_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|141aa|up_2|NC_009523.1_3118592_3119015_+	NA	NA|1251aa|up_1|NC_009523.1_3119096_3122849_-	TIGR02025, Magnesium-chelatase_subunit_H, magnesium chelatase, H subunit	NA|483aa|up_0|NC_009523.1_3123255_3124704_-	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins	NA|380aa|down_0|NC_009523.1_3125128_3126268_-	PRK11259, solA, N-methyl-L-tryptophan oxidase	NA|95aa|down_1|NC_009523.1_3126462_3126747_+	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|131aa|down_2|NC_009523.1_3127667_3128060_+	NA	NA|105aa|down_3|NC_009523.1_3128111_3128426_+	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|117aa|down_4|NC_009523.1_3128422_3128773_+	COG2361, COG2361, Uncharacterized conserved protein [Function unknown]	NA|149aa|down_5|NC_009523.1_3128772_3129219_+	NA	NA|71aa|down_6|NC_009523.1_3129786_3129999_+	pfam10049, DUF2283, Protein of unknown function (DUF2283)	NA|52aa|down_7|NC_009523.1_3130190_3130346_+	NA	NA|1244aa|down_8|NC_009523.1_3130710_3134442_-	NF033451, BREX_2_MTaseX, BREX-2 system adenine-specific DNA-methyltransferase PglX	NA|970aa|down_9|NC_009523.1_3134438_3137348_-	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	57	3143451-3143560	54	CRISPRCasFinder	no	WYL	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Unclear	GGTGAGGGGCAACAGCGCAACGTTAACGTACCCGCACCC	39	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|52aa|up_9|NC_009523.1_3130190_3130346_+,NA|105aa|up_5|NC_009523.1_3139254_3139569_-,NA|79aa|up_4|NC_009523.1_3139580_3139817_-,NA|131aa|up_3|NC_009523.1_3139785_3140178_-,NA|151aa|up_2|NC_009523.1_3140174_3140627_-,NA|126aa|up_1|NC_009523.1_3140595_3140973_-,NA|103aa|down_0|NC_009523.1_3145688_3145997_-,NA|139aa|down_1|NC_009523.1_3145960_3146377_-,NA|418aa|down_5|NC_009523.1_3158391_3159645_+	NA|52aa|up_9|NC_009523.1_3130190_3130346_+	NA	NA|1244aa|up_8|NC_009523.1_3130710_3134442_-	NF033451, BREX_2_MTaseX, BREX-2 system adenine-specific DNA-methyltransferase PglX	NA|970aa|up_7|NC_009523.1_3134438_3137348_-	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|144aa|up_6|NC_009523.1_3138604_3139036_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|105aa|up_5|NC_009523.1_3139254_3139569_-	NA	NA|79aa|up_4|NC_009523.1_3139580_3139817_-	NA	NA|131aa|up_3|NC_009523.1_3139785_3140178_-	NA	NA|151aa|up_2|NC_009523.1_3140174_3140627_-	NA	NA|126aa|up_1|NC_009523.1_3140595_3140973_-	NA	NA|614aa|up_0|NC_009523.1_3141119_3142961_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|103aa|down_0|NC_009523.1_3145688_3145997_-	NA	NA|139aa|down_1|NC_009523.1_3145960_3146377_-	NA	NA|309aa|down_2|NC_009523.1_3146546_3147473_+	PRK06606, PRK06606, branched-chain amino acid transaminase	NA|386aa|down_3|NC_009523.1_3147485_3148643_+	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	WYL|677aa|down_4|NC_009523.1_3149426_3151457_-	pfam13280, WYL, WYL domain	NA|418aa|down_5|NC_009523.1_3158391_3159645_+	NA	NA|368aa|down_6|NC_009523.1_3160187_3161291_-	cd03795, GT4_WfcD-like, Escherichia coli alpha-1,3-mannosyltransferase WfcD and similar proteins	NA|449aa|down_7|NC_009523.1_3161293_3162640_-	cd05681, M20_dipept_Sso-CP2, uncharacterized M20 dipeptidase	NA|353aa|down_8|NC_009523.1_3162820_3163879_+	cd07438, PHP_HisPPase_AMP, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound	NA|250aa|down_9|NC_009523.1_3165344_3166094_-	cd01416, SAICAR_synt_Ade5, Ade5_like 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	58	3151615-3158052	7,55,7,8	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	WYL	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Unclear	GAAGCGACCACTGCCCCGCAATGAAGGGGATTGAA,GAAGCGACCACTGCCCCGCAATGAAGGGGATTGAAAC,GAAGCGACCACTGCCCCGCAATGAAGGGGATTGA,GAAGCGACCACTGCCCCGCAATGAAGGGGATTGA	35,37,34,34	0	0	NA	NA	NA:NA:NA:NA	83,86,86,83	86	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|131aa|up_9|NC_009523.1_3139785_3140178_-,NA|151aa|up_8|NC_009523.1_3140174_3140627_-,NA|126aa|up_7|NC_009523.1_3140595_3140973_-,NA|708aa|up_5|NC_009523.1_3143543_3145667_-,NA|103aa|up_4|NC_009523.1_3145688_3145997_-,NA|139aa|up_3|NC_009523.1_3145960_3146377_-,NA|418aa|down_0|NC_009523.1_3158391_3159645_+,NA|219aa|down_7|NC_009523.1_3168056_3168713_+	NA|131aa|up_9|NC_009523.1_3139785_3140178_-	NA	NA|151aa|up_8|NC_009523.1_3140174_3140627_-	NA	NA|126aa|up_7|NC_009523.1_3140595_3140973_-	NA	NA|614aa|up_6|NC_009523.1_3141119_3142961_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|708aa|up_5|NC_009523.1_3143543_3145667_-	NA	NA|103aa|up_4|NC_009523.1_3145688_3145997_-	NA	NA|139aa|up_3|NC_009523.1_3145960_3146377_-	NA	NA|309aa|up_2|NC_009523.1_3146546_3147473_+	PRK06606, PRK06606, branched-chain amino acid transaminase	NA|386aa|up_1|NC_009523.1_3147485_3148643_+	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	WYL|677aa|up_0|NC_009523.1_3149426_3151457_-	pfam13280, WYL, WYL domain	NA|418aa|down_0|NC_009523.1_3158391_3159645_+	NA	NA|368aa|down_1|NC_009523.1_3160187_3161291_-	cd03795, GT4_WfcD-like, Escherichia coli alpha-1,3-mannosyltransferase WfcD and similar proteins	NA|449aa|down_2|NC_009523.1_3161293_3162640_-	cd05681, M20_dipept_Sso-CP2, uncharacterized M20 dipeptidase	NA|353aa|down_3|NC_009523.1_3162820_3163879_+	cd07438, PHP_HisPPase_AMP, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound	NA|250aa|down_4|NC_009523.1_3165344_3166094_-	cd01416, SAICAR_synt_Ade5, Ade5_like 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase	NA|249aa|down_5|NC_009523.1_3166090_3166837_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|342aa|down_6|NC_009523.1_3166917_3167943_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|219aa|down_7|NC_009523.1_3168056_3168713_+	NA	NA|777aa|down_8|NC_009523.1_3168722_3171053_+	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|340aa|down_9|NC_009523.1_3171079_3172099_+	PRK05451, PRK05451, dihydroorotase; Provisional
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	59	3194362-3194546	56	CRISPRCasFinder	no	cmr3gr5,cmr5gr11,cmr4gr7	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Type III-C	ACTTATGCGGGCGAGACGTCCGCGCACCCAGGCGGCGCTTGGGCG	45	0	0	NA	NA	NA	1	1	TypeIII-C	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|66aa|down_4|NC_009523.1_3206598_3206796_+,NA|143aa|down_5|NC_009523.1_3206798_3207227_+,cmr5gr11|139aa|down_9|NC_009523.1_3212945_3213362_-	NA|336aa|up_9|NC_009523.1_3186440_3187448_+	TIGR03211, catechol_2_3, catechol 2,3 dioxygenase	NA|259aa|up_8|NC_009523.1_3187604_3188381_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|306aa|up_7|NC_009523.1_3188362_3189280_+	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated	NA|339aa|up_6|NC_009523.1_3189276_3190293_+	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	NA|182aa|up_5|NC_009523.1_3190309_3190855_+	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|71aa|up_4|NC_009523.1_3190867_3191080_+	cd00491, 4Oxalocrotonate_Tautomerase, 4-Oxalocrotonate Tautomerase:  Catalyzes the isomerization of unsaturated ketones	NA|245aa|up_3|NC_009523.1_3191063_3191798_+	COG3971, COG3971, 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|486aa|up_2|NC_009523.1_3191794_3193252_+	cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8 member A1-like	NA|277aa|up_1|NC_009523.1_3193233_3194064_+	TIGR03220, 2-hydroxypenta-24-dienoate_hydratase, 2-oxopent-4-enoate hydratase	NA|72aa|up_0|NC_009523.1_3194050_3194266_+	COG1942, COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]	NA|175aa|down_0|NC_009523.1_3194896_3195421_+	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|1184aa|down_1|NC_009523.1_3195534_3199086_+	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|348aa|down_2|NC_009523.1_3199847_3200891_+	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	NA|1715aa|down_3|NC_009523.1_3201461_3206606_+	pfam12770, CHAT, CHAT domain	NA|66aa|down_4|NC_009523.1_3206598_3206796_+	NA	NA|143aa|down_5|NC_009523.1_3206798_3207227_+	NA	NA|867aa|down_6|NC_009523.1_3207888_3210489_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|538aa|down_7|NC_009523.1_3210505_3212119_-	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	cmr3gr5|278aa|down_8|NC_009523.1_3212115_3212949_-	pfam03787, RAMPs, RAMP superfamily	cmr5gr11|139aa|down_9|NC_009523.1_3212945_3213362_-	NA
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	60	3282751-3282880	57	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GGGCAAAGCCCGCCTGCGCGGAACGCGAACTCCAACGGTGACCCT	45	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|74aa|down_1|NC_009523.1_3283783_3284005_-	NA|327aa|up_9|NC_009523.1_3270539_3271520_+	cd05282, ETR_like, 2-enoyl thioester reductase-like	NA|422aa|up_8|NC_009523.1_3271705_3272971_+	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins	NA|446aa|up_7|NC_009523.1_3272987_3274325_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|300aa|up_6|NC_009523.1_3274328_3275228_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|258aa|up_5|NC_009523.1_3275335_3276109_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|834aa|up_4|NC_009523.1_3276138_3278640_+	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins	NA|94aa|up_3|NC_009523.1_3278640_3278922_-	pfam04368, DUF507, Protein of unknown function (DUF507)	NA|412aa|up_2|NC_009523.1_3278937_3280173_-	TIGR01790, Uncharacterized_carotenoid_cyclase_DR_0801, lycopene cyclase family protein	NA|367aa|up_1|NC_009523.1_3280181_3281282_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|342aa|up_0|NC_009523.1_3281274_3282300_-	cd07187, YvcK_like, family of mostly uncharacterized proteins similar to B	NA|262aa|down_0|NC_009523.1_3282970_3283756_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|74aa|down_1|NC_009523.1_3283783_3284005_-	NA	NA|324aa|down_2|NC_009523.1_3284200_3285172_+	cd00687, Terpene_cyclase_nonplant_C1, Non-plant Terpene Cyclases, Class 1	NA|458aa|down_3|NC_009523.1_3285291_3286665_-	TIGR03991, alt_bact_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase	NA|396aa|down_4|NC_009523.1_3286688_3287876_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|370aa|down_5|NC_009523.1_3287902_3289012_-	cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria	NA|470aa|down_6|NC_009523.1_3289033_3290443_-	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e	NA|477aa|down_7|NC_009523.1_3290551_3291982_-	pfam04932, Wzy_C, O-Antigen ligase	NA|551aa|down_8|NC_009523.1_3292068_3293721_-	pfam17996, CE2_N, Carbohydrate esterase 2 N-terminal	NA|223aa|down_9|NC_009523.1_3293855_3294524_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	61	3334440-3334531	58	CRISPRCasFinder	no	WYL	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Unclear	TAGCCCGCGCAGGCGGGCTTTGCC	24	1	5	3334464-3334507|3334464-3334507|3334464-3334507|3334464-3334507|3334464-3334507	NC_009523.1_4699921-4699964|NC_009523.1_562517-562474|NC_009523.1_1827435-1827478|NC_009523.1_3652890-3652933|NC_009523.1_4126102-4126059	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|117aa|down_2|NC_009523.1_3336819_3337170_-,NA|418aa|down_7|NC_009523.1_3342551_3343805_-	NA|128aa|up_9|NC_009523.1_3319807_3320191_-	TIGR03666, Rv2061_F420, PPOX class probable F420-dependent enzyme, Rv2061 family	NA|539aa|up_8|NC_009523.1_3320331_3321948_-	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|290aa|up_7|NC_009523.1_3322133_3323003_+	pfam13489, Methyltransf_23, Methyltransferase domain	NA|569aa|up_6|NC_009523.1_3323024_3324731_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|1268aa|up_5|NC_009523.1_3324723_3328527_+	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|163aa|up_4|NC_009523.1_3328588_3329077_-	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain	NA|687aa|up_3|NC_009523.1_3329226_3331287_+	PRK02628, nadE, NAD synthetase; Reviewed	NA|373aa|up_2|NC_009523.1_3331396_3332515_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|350aa|up_1|NC_009523.1_3332511_3333561_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|259aa|up_0|NC_009523.1_3333604_3334381_+	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel	NA|246aa|down_0|NC_009523.1_3334670_3335408_-	pfam07947, YhhN, YhhN family	NA|238aa|down_1|NC_009523.1_3335651_3336365_+	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|117aa|down_2|NC_009523.1_3336819_3337170_-	NA	NA|104aa|down_3|NC_009523.1_3337730_3338042_-	cd07344, M48_yhfN_like, Peptidase M48 YhfN-like, a novel minigluzincin	NA|980aa|down_4|NC_009523.1_3338038_3340978_-	TIGR00348, R_protein, type I site-specific deoxyribonuclease, HsdR family	NA|240aa|down_5|NC_009523.1_3340974_3341694_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|291aa|down_6|NC_009523.1_3341697_3342570_-	cd17260, RMtype1_S_EcoEI-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S	NA|418aa|down_7|NC_009523.1_3342551_3343805_-	NA	NA|524aa|down_8|NC_009523.1_3344497_3346069_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|419aa|down_9|NC_009523.1_3346279_3347536_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	62	3475641-3475747	59	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	TAGCGGATTATTTATTCAAAGACCATAAGCCCTCGGCTA	39	1	9	3475680-3475708|3475680-3475708|3475680-3475708|3475680-3475708|3475680-3475708|3475680-3475708|3475680-3475708|3475680-3475708|3475680-3475708	NC_009523.1_487965-487993|NC_009523.1_1770063-1770091|NC_009523.1_2137773-2137801|NC_009523.1_5135509-5135537|NC_009523.1_5132800-5132772|NC_009523.1_1977526-1977498|NC_009523.1_4331667-4331639|NC_009523.1_1341657-1341629|NC_009523.1_2498233-2498205	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|246aa|up_3|NC_009523.1_3469544_3470282_+,NA|82aa|up_1|NC_009523.1_3471755_3472001_+,NA|741aa|up_0|NC_009523.1_3472030_3474253_+,NA|114aa|down_1|NC_009523.1_3477264_3477606_+,NA|101aa|down_7|NC_009523.1_3480134_3480437_+	NA|803aa|up_9|NC_009523.1_3463926_3466335_-	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|140aa|up_8|NC_009523.1_3466331_3466751_-	cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)	NA|299aa|up_7|NC_009523.1_3466801_3467698_-	TIGR03619, F420_Rv2161c, probable F420-dependent oxidoreductase, Rv2161c family	NA|117aa|up_6|NC_009523.1_3467808_3468159_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|235aa|up_5|NC_009523.1_3468185_3468890_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|228aa|up_4|NC_009523.1_3468864_3469548_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|246aa|up_3|NC_009523.1_3469544_3470282_+	NA	NA|381aa|up_2|NC_009523.1_3470205_3471348_+	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|82aa|up_1|NC_009523.1_3471755_3472001_+	NA	NA|741aa|up_0|NC_009523.1_3472030_3474253_+	NA	NA|343aa|down_0|NC_009523.1_3476055_3477084_-	cd01172, RfaE_like, RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose	NA|114aa|down_1|NC_009523.1_3477264_3477606_+	NA	NA|202aa|down_2|NC_009523.1_3477612_3478218_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|202aa|down_3|NC_009523.1_3478324_3478930_+	PRK11922, PRK11922, RNA polymerase sigma factor; Provisional	NA|88aa|down_4|NC_009523.1_3478919_3479183_+	pfam13490, zf-HC2, Putative zinc-finger	NA|201aa|down_5|NC_009523.1_3479225_3479828_+	PRK11922, PRK11922, RNA polymerase sigma factor; Provisional	NA|95aa|down_6|NC_009523.1_3479860_3480145_+	pfam13490, zf-HC2, Putative zinc-finger	NA|101aa|down_7|NC_009523.1_3480134_3480437_+	NA	NA|544aa|down_8|NC_009523.1_3480761_3482393_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|313aa|down_9|NC_009523.1_3482415_3483354_-	cd06260, DUF820, Domain of unknown function (DUF820)
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	63	3639479-3639574	60	CRISPRCasFinder	no	cas3	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Unclear	TTACTCAAAGACCATAAGCCCTCGGCTA	28	1	33	3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546|3639507-3639546	NC_009523.1_814554-814515|NC_009523.1_983025-983064|NC_009523.1_1525964-1525925|NC_009523.1_2519714-2519675|NC_009523.1_4452718-4452757|NC_009523.1_4463063-4463024|NC_009523.1_5327935-5327974|NC_009523.1_17573-17612|NC_009523.1_748479-748518|NC_009523.1_839797-839836|NC_009523.1_916990-916951|NC_009523.1_988155-988116|NC_009523.1_1898760-1898799|NC_009523.1_3282611-3282650|NC_009523.1_3645787-3645826|NC_009523.1_4846813-4846774|NC_009523.1_5230743-5230704|NC_009523.1_5321594-5321633|NC_009523.1_5645091-5645130|NC_009523.1_232695-232656|NC_009523.1_233187-233148|NC_009523.1_315072-315111|NC_009523.1_584956-584917|NC_009523.1_585092-585053|NC_009523.1_1570052-1570091|NC_009523.1_1731643-1731682|NC_009523.1_1827507-1827468|NC_009523.1_3652894-3652855|NC_009523.1_3715650-3715611|NC_009523.1_3925220-3925259|NC_009523.1_4327527-4327566|NC_009523.1_5361004-5360965|NC_009523.1_5558249-5558210	NA	1	1	Unclear	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|118aa|up_8|NC_009523.1_3620812_3621166_-,NA|181aa|up_6|NC_009523.1_3622494_3623037_-,NA|111aa|down_6|NC_009523.1_3646337_3646670_+,NA|79aa|down_8|NC_009523.1_3648103_3648340_-	NA|321aa|up_9|NC_009523.1_3619364_3620327_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|118aa|up_8|NC_009523.1_3620812_3621166_-	NA	NA|158aa|up_7|NC_009523.1_3621575_3622049_-	cd17552, REC_RR468-like, phosphoacceptor receiver (REC) domain of Thermotoga maritima response regulator RR468 and similar domains	NA|181aa|up_6|NC_009523.1_3622494_3623037_-	NA	NA|558aa|up_5|NC_009523.1_3623166_3624840_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|3244aa|up_4|NC_009523.1_3624853_3634585_+	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|254aa|up_3|NC_009523.1_3634654_3635416_+	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]	NA|515aa|up_2|NC_009523.1_3635412_3636957_+	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|494aa|up_1|NC_009523.1_3636968_3638450_+	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|165aa|up_0|NC_009523.1_3638461_3638956_+	cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase	NA|234aa|down_0|NC_009523.1_3639630_3640332_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|124aa|down_1|NC_009523.1_3640345_3640717_-	cd13921, Amicyanin, Amicyanin is a type I blue copper protein that plays an essential role in electron transfer	NA|198aa|down_2|NC_009523.1_3640720_3641314_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|662aa|down_3|NC_009523.1_3641589_3643575_+	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|124aa|down_4|NC_009523.1_3643616_3643988_+	COG0633, Fdx, Ferredoxin [Energy production and conversion]	NA|321aa|down_5|NC_009523.1_3644399_3645362_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|111aa|down_6|NC_009523.1_3646337_3646670_+	NA	NA|88aa|down_7|NC_009523.1_3646683_3646947_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|79aa|down_8|NC_009523.1_3648103_3648340_-	NA	NA|125aa|down_9|NC_009523.1_3648424_3648799_-	TIGR02436, S23_ribosomal_protein, four helix bundle protein
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	64	3645789-3645881	61	CRISPRCasFinder	no	cas3	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Unclear	CAGGGCGAAGCCCGCCTGCGCGGGC	25	1	5	3645814-3645856|3645814-3645856|3645814-3645856|3645814-3645856|3645814-3645856	NC_009523.1_988128-988086|NC_009523.1_1877124-1877166|NC_009523.1_3282638-3282680|NC_009523.1_3475707-3475749|NC_009523.1_3639534-3639576	NA	1	1	Unclear	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|111aa|down_0|NC_009523.1_3646337_3646670_+,NA|79aa|down_2|NC_009523.1_3648103_3648340_-,NA|183aa|down_4|NC_009523.1_3648817_3649366_+	NA|254aa|up_9|NC_009523.1_3634654_3635416_+	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]	NA|515aa|up_8|NC_009523.1_3635412_3636957_+	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|494aa|up_7|NC_009523.1_3636968_3638450_+	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|165aa|up_6|NC_009523.1_3638461_3638956_+	cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase	NA|234aa|up_5|NC_009523.1_3639630_3640332_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|124aa|up_4|NC_009523.1_3640345_3640717_-	cd13921, Amicyanin, Amicyanin is a type I blue copper protein that plays an essential role in electron transfer	NA|198aa|up_3|NC_009523.1_3640720_3641314_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|662aa|up_2|NC_009523.1_3641589_3643575_+	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|124aa|up_1|NC_009523.1_3643616_3643988_+	COG0633, Fdx, Ferredoxin [Energy production and conversion]	NA|321aa|up_0|NC_009523.1_3644399_3645362_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|111aa|down_0|NC_009523.1_3646337_3646670_+	NA	NA|88aa|down_1|NC_009523.1_3646683_3646947_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|79aa|down_2|NC_009523.1_3648103_3648340_-	NA	NA|125aa|down_3|NC_009523.1_3648424_3648799_-	TIGR02436, S23_ribosomal_protein, four helix bundle protein	NA|183aa|down_4|NC_009523.1_3648817_3649366_+	NA	NA|1081aa|down_5|NC_009523.1_3649362_3652605_-	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|321aa|down_6|NC_009523.1_3653264_3654227_+	pfam01548, DEDD_Tnp_IS110, Transposase	cas3|869aa|down_7|NC_009523.1_3655656_3658263_-	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|250aa|down_8|NC_009523.1_3658509_3659259_+	PRK15489, nfrB, glycosyl transferase family protein	NA|221aa|down_9|NC_009523.1_3659589_3660252_+	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	65	3647299-3647391	62	CRISPRCasFinder	no	cas3,PD-DExK	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Unclear	AGACGAAGCCCGCCTGCGCGGGCTA	25	1	2	3647324-3647366|3647324-3647366	NC_009523.1_3496297-3496339|NC_009523.1_5096010-5096052	NA	1	1	Unclear	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|111aa|up_1|NC_009523.1_3646337_3646670_+,NA|79aa|down_0|NC_009523.1_3648103_3648340_-,NA|183aa|down_2|NC_009523.1_3648817_3649366_+	NA|494aa|up_9|NC_009523.1_3636968_3638450_+	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|165aa|up_8|NC_009523.1_3638461_3638956_+	cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase	NA|234aa|up_7|NC_009523.1_3639630_3640332_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|124aa|up_6|NC_009523.1_3640345_3640717_-	cd13921, Amicyanin, Amicyanin is a type I blue copper protein that plays an essential role in electron transfer	NA|198aa|up_5|NC_009523.1_3640720_3641314_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|662aa|up_4|NC_009523.1_3641589_3643575_+	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|124aa|up_3|NC_009523.1_3643616_3643988_+	COG0633, Fdx, Ferredoxin [Energy production and conversion]	NA|321aa|up_2|NC_009523.1_3644399_3645362_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|111aa|up_1|NC_009523.1_3646337_3646670_+	NA	NA|88aa|up_0|NC_009523.1_3646683_3646947_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|79aa|down_0|NC_009523.1_3648103_3648340_-	NA	NA|125aa|down_1|NC_009523.1_3648424_3648799_-	TIGR02436, S23_ribosomal_protein, four helix bundle protein	NA|183aa|down_2|NC_009523.1_3648817_3649366_+	NA	NA|1081aa|down_3|NC_009523.1_3649362_3652605_-	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|321aa|down_4|NC_009523.1_3653264_3654227_+	pfam01548, DEDD_Tnp_IS110, Transposase	cas3|869aa|down_5|NC_009523.1_3655656_3658263_-	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|250aa|down_6|NC_009523.1_3658509_3659259_+	PRK15489, nfrB, glycosyl transferase family protein	NA|221aa|down_7|NC_009523.1_3659589_3660252_+	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p	NA|319aa|down_8|NC_009523.1_3660353_3661310_-	cd03401, SPFH_prohibitin, Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|419aa|down_9|NC_009523.1_3661589_3662846_-	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	66	3678127-3678217	63	CRISPRCasFinder	no	PD-DExK	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Unclear	GCAAAGCCCGCCTGCGCGGGCTA	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|144aa|up_8|NC_009523.1_3667751_3668183_+,NA|86aa|up_7|NC_009523.1_3668302_3668560_+,NA|138aa|down_2|NC_009523.1_3682881_3683295_-,NA|121aa|down_8|NC_009523.1_3692261_3692624_+	NA|223aa|up_9|NC_009523.1_3667052_3667721_+	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|144aa|up_8|NC_009523.1_3667751_3668183_+	NA	NA|86aa|up_7|NC_009523.1_3668302_3668560_+	NA	NA|123aa|up_6|NC_009523.1_3668510_3668879_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|116aa|up_5|NC_009523.1_3668906_3669254_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|245aa|up_4|NC_009523.1_3669435_3670170_+	pfam05685, Uma2, Putative restriction endonuclease	NA|243aa|up_3|NC_009523.1_3670181_3670910_+	pfam05685, Uma2, Putative restriction endonuclease	NA|927aa|up_2|NC_009523.1_3671533_3674314_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|355aa|up_1|NC_009523.1_3674303_3675368_+	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain	NA|321aa|up_0|NC_009523.1_3675658_3676621_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|697aa|down_0|NC_009523.1_3678301_3680392_-	cd18807, SF1_C_UvrD, C-terminal helicase domain of UvrD family helicases	NA|830aa|down_1|NC_009523.1_3680395_3682885_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|138aa|down_2|NC_009523.1_3682881_3683295_-	NA	NA|1019aa|down_3|NC_009523.1_3683817_3686874_-	pfam04851, ResIII, Type III restriction enzyme, res subunit	NA|488aa|down_4|NC_009523.1_3687408_3688872_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|471aa|down_5|NC_009523.1_3688871_3690284_-	TIGR03023, Sugar_transferase	NA|300aa|down_6|NC_009523.1_3690306_3691206_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|262aa|down_7|NC_009523.1_3691344_3692130_-	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional	NA|121aa|down_8|NC_009523.1_3692261_3692624_+	NA	NA|796aa|down_9|NC_009523.1_3692719_3695107_-	COG2609, AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	67	3683476-3683595	64	CRISPRCasFinder	no	PD-DExK	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Unclear	GTGTTTTTTCCGGTTTTCTTATCCCTTCGCAT	32	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|138aa|up_0|NC_009523.1_3682881_3683295_-,NA|121aa|down_5|NC_009523.1_3692261_3692624_+	NA|123aa|up_9|NC_009523.1_3668510_3668879_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|116aa|up_8|NC_009523.1_3668906_3669254_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|245aa|up_7|NC_009523.1_3669435_3670170_+	pfam05685, Uma2, Putative restriction endonuclease	NA|243aa|up_6|NC_009523.1_3670181_3670910_+	pfam05685, Uma2, Putative restriction endonuclease	NA|927aa|up_5|NC_009523.1_3671533_3674314_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|355aa|up_4|NC_009523.1_3674303_3675368_+	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain	NA|321aa|up_3|NC_009523.1_3675658_3676621_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|697aa|up_2|NC_009523.1_3678301_3680392_-	cd18807, SF1_C_UvrD, C-terminal helicase domain of UvrD family helicases	NA|830aa|up_1|NC_009523.1_3680395_3682885_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|138aa|up_0|NC_009523.1_3682881_3683295_-	NA	NA|1019aa|down_0|NC_009523.1_3683817_3686874_-	pfam04851, ResIII, Type III restriction enzyme, res subunit	NA|488aa|down_1|NC_009523.1_3687408_3688872_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|471aa|down_2|NC_009523.1_3688871_3690284_-	TIGR03023, Sugar_transferase	NA|300aa|down_3|NC_009523.1_3690306_3691206_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|262aa|down_4|NC_009523.1_3691344_3692130_-	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional	NA|121aa|down_5|NC_009523.1_3692261_3692624_+	NA	NA|796aa|down_6|NC_009523.1_3692719_3695107_-	COG2609, AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]	NA|147aa|down_7|NC_009523.1_3695125_3695566_-	pfam01934, DUF86, Protein of unknown function DUF86	NA|134aa|down_8|NC_009523.1_3695562_3695964_-	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|204aa|down_9|NC_009523.1_3696050_3696662_-	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	68	3750413-3750527	65	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	ATCCGTGTTCTATTCATTAGAAACCACGGAT	31	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|188aa|up_6|NC_009523.1_3732009_3732573_+,NA	NA|455aa|up_9|NC_009523.1_3728495_3729860_+	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional	NA|266aa|up_8|NC_009523.1_3729871_3730669_+	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|238aa|up_7|NC_009523.1_3731243_3731957_+	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|188aa|up_6|NC_009523.1_3732009_3732573_+	NA	NA|845aa|up_5|NC_009523.1_3732588_3735123_-	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase	NA|372aa|up_4|NC_009523.1_3735240_3736356_+	cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides	NA|475aa|up_3|NC_009523.1_3736601_3738026_+	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|479aa|up_2|NC_009523.1_3738393_3739830_+	TIGR00836, Ammonium_transporter, ammonium transporter	NA|1555aa|up_1|NC_009523.1_3740281_3744946_+	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|1294aa|up_0|NC_009523.1_3746272_3750154_+	cd14955, NHL_like_4, Uncharacterized NHL-repeat domain in bacterial and archaeal proteins	NA|354aa|down_0|NC_009523.1_3750680_3751742_-	PRK06270, PRK06270, homoserine dehydrogenase; Provisional	NA|188aa|down_1|NC_009523.1_3751861_3752425_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|119aa|down_2|NC_009523.1_3752618_3752975_+	PRK06602, PRK06602, NADH:ubiquinone oxidoreductase subunit A; Validated	NA|269aa|down_3|NC_009523.1_3753286_3754093_+	PRK14819, PRK14819, NADH-quinone oxidoreductase subunit B	NA|190aa|down_4|NC_009523.1_3754070_3754640_+	pfam00329, Complex1_30kDa, Respiratory-chain NADH dehydrogenase, 30 Kd subunit	NA|375aa|down_5|NC_009523.1_3754671_3755796_+	PRK06075, PRK06075, NADH-quinone oxidoreductase subunit D	NA|441aa|down_6|NC_009523.1_3755929_3757252_+	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI	NA|453aa|down_7|NC_009523.1_3757263_3758622_+	pfam00146, NADHdh, NADH dehydrogenase	NA|216aa|down_8|NC_009523.1_3758661_3759309_+	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J	NA|109aa|down_9|NC_009523.1_3759363_3759690_+	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	69	3752997-3753121	66	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GTTGAACGTTGCACGTTGAACGTGGGACGACAAC	34	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|188aa|up_9|NC_009523.1_3732009_3732573_+,NA	NA|188aa|up_9|NC_009523.1_3732009_3732573_+	NA	NA|845aa|up_8|NC_009523.1_3732588_3735123_-	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase	NA|372aa|up_7|NC_009523.1_3735240_3736356_+	cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides	NA|475aa|up_6|NC_009523.1_3736601_3738026_+	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|479aa|up_5|NC_009523.1_3738393_3739830_+	TIGR00836, Ammonium_transporter, ammonium transporter	NA|1555aa|up_4|NC_009523.1_3740281_3744946_+	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|1294aa|up_3|NC_009523.1_3746272_3750154_+	cd14955, NHL_like_4, Uncharacterized NHL-repeat domain in bacterial and archaeal proteins	NA|354aa|up_2|NC_009523.1_3750680_3751742_-	PRK06270, PRK06270, homoserine dehydrogenase; Provisional	NA|188aa|up_1|NC_009523.1_3751861_3752425_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|119aa|up_0|NC_009523.1_3752618_3752975_+	PRK06602, PRK06602, NADH:ubiquinone oxidoreductase subunit A; Validated	NA|269aa|down_0|NC_009523.1_3753286_3754093_+	PRK14819, PRK14819, NADH-quinone oxidoreductase subunit B	NA|190aa|down_1|NC_009523.1_3754070_3754640_+	pfam00329, Complex1_30kDa, Respiratory-chain NADH dehydrogenase, 30 Kd subunit	NA|375aa|down_2|NC_009523.1_3754671_3755796_+	PRK06075, PRK06075, NADH-quinone oxidoreductase subunit D	NA|441aa|down_3|NC_009523.1_3755929_3757252_+	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI	NA|453aa|down_4|NC_009523.1_3757263_3758622_+	pfam00146, NADHdh, NADH dehydrogenase	NA|216aa|down_5|NC_009523.1_3758661_3759309_+	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J	NA|109aa|down_6|NC_009523.1_3759363_3759690_+	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK	NA|726aa|down_7|NC_009523.1_3759955_3762133_+	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed	NA|562aa|down_8|NC_009523.1_3762198_3763884_+	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|508aa|down_9|NC_009523.1_3763909_3765433_+	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	70	3781897-3786321	8,67,9	CRT,CRISPRCasFinder,PILER-CR	no	WYL,cas2,cas1,RT,csx15,csx1	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Unclear	GTTTCAATCCCCTTCATTGCGGGGCAGTGGTCGCTTC,GTTTCAATCCCCTTCATTGCGGGGCAGTGGTCGCTTC,GAAGCGACCACTGCCCCGCAATGAAGGGGATTGA	37,37,34	0	0	NA	NA	NA:NA:NA	59,58,58	59	Unclear	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|127aa|up_7|NC_009523.1_3771548_3771929_+,NA|66aa|up_2|NC_009523.1_3779844_3780042_-,NA|125aa|up_1|NC_009523.1_3780535_3780910_+,NA|53aa|up_0|NC_009523.1_3781016_3781175_+,NA	NA|645aa|up_9|NC_009523.1_3768046_3769981_+	pfam16927, HisKA_7TM, N-terminal 7TM region of histidine kinase	NA|472aa|up_8|NC_009523.1_3770120_3771536_+	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|127aa|up_7|NC_009523.1_3771548_3771929_+	NA	NA|212aa|up_6|NC_009523.1_3772098_3772734_-	cd11730, Tthb094_like_SDR_c, Tthb094 and related proteins, classical (c) SDRs	NA|816aa|up_5|NC_009523.1_3773050_3775498_-	pfam13654, AAA_32, AAA domain	NA|314aa|up_4|NC_009523.1_3775569_3776511_-	cd11592, Agmatinase_PAH, Agmatinase-like family includes proclavaminic acid amidinohydrolase	NA|983aa|up_3|NC_009523.1_3776782_3779731_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|66aa|up_2|NC_009523.1_3779844_3780042_-	NA	NA|125aa|up_1|NC_009523.1_3780535_3780910_+	NA	NA|53aa|up_0|NC_009523.1_3781016_3781175_+	NA	WYL|696aa|down_0|NC_009523.1_3786480_3788568_+	pfam13280, WYL, WYL domain	cas2|92aa|down_1|NC_009523.1_3788536_3788812_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|775aa|down_2|NC_009523.1_3788944_3791269_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	cas1|333aa|down_3|NC_009523.1_3791390_3792389_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	RT|445aa|down_4|NC_009523.1_3792896_3794231_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|180aa|down_5|NC_009523.1_3794263_3794803_-	cd09279, RNase_HI_like, RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI	NA|174aa|down_6|NC_009523.1_3795556_3796078_-	COG2405, COG2405, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|139aa|down_7|NC_009523.1_3796074_3796491_-	pfam03683, UPF0175, Uncharacterized protein family (UPF0175)	csx15|126aa|down_8|NC_009523.1_3797217_3797595_-	cd09766, Csx15_I-U, CRISPR/Cas system-associated protein Csx15	NA|250aa|down_9|NC_009523.1_3797591_3798341_-	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	71	3854177-3854510	10,68,9	PILER-CR,CRISPRCasFinder,CRT	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	CACCGCTCCTCGCGCACGCGGTTACAGCG,CACCGCTCCTCGCGCACGCGGTTACAGCG,CACCGCTCCTCGCGCACGCGGTTACAGCG	29,29,29	0	0	NA	NA	NA:NA:NA	4,5,5	5	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA	NA|321aa|up_9|NC_009523.1_3837146_3838109_-	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins	NA|323aa|up_8|NC_009523.1_3838105_3839074_-	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins	NA|506aa|up_7|NC_009523.1_3839070_3840588_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|371aa|up_6|NC_009523.1_3840592_3841705_-	cd19999, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate binding protein such as CUT2	NA|637aa|up_5|NC_009523.1_3842131_3844042_-	PRK13557, PRK13557, histidine kinase; Provisional	NA|148aa|up_4|NC_009523.1_3844053_3844497_-	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains	NA|710aa|up_3|NC_009523.1_3844456_3846586_-	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|228aa|up_2|NC_009523.1_3846829_3847513_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|215aa|up_1|NC_009523.1_3847516_3848161_-	PRK09496, trkA, Trk system potassium transporter TrkA	NA|932aa|up_0|NC_009523.1_3848178_3850974_-	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|296aa|down_0|NC_009523.1_3855655_3856543_-	pfam00950, ABC-3, ABC 3 transport family	NA|263aa|down_1|NC_009523.1_3856557_3857346_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|316aa|down_2|NC_009523.1_3857360_3858308_-	cd01016, TroA, Metal binding protein TroA	NA|193aa|down_3|NC_009523.1_3858613_3859192_+	TIGR01926, peroxid_rel, uncharacterized peroxidase-related enzyme	NA|513aa|down_4|NC_009523.1_3859221_3860760_+	pfam03891, DUF333, Domain of unknown function (DUF333)	NA|576aa|down_5|NC_009523.1_3860856_3862584_-	COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy production and conversion]	NA|334aa|down_6|NC_009523.1_3862886_3863888_+	cd19087, AKR_AKR12A1_B1_C1, AKR12A, AKR12B,  AKR12C families of aldo-keto reductase (AKR)	NA|316aa|down_7|NC_009523.1_3864127_3865075_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|91aa|down_8|NC_009523.1_3865081_3865354_-	pfam01649, Ribosomal_S20p, Ribosomal protein S20	NA|571aa|down_9|NC_009523.1_3865471_3867184_+	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	72	3876137-3876246	69	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GCCCTCGGCTATGCAGGGCGAAGCCCGCCTGCGCGGGCTATA	42	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|76aa|down_2|NC_009523.1_3878975_3879203_+,NA|192aa|down_7|NC_009523.1_3883180_3883756_+	NA|576aa|up_9|NC_009523.1_3860856_3862584_-	COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy production and conversion]	NA|334aa|up_8|NC_009523.1_3862886_3863888_+	cd19087, AKR_AKR12A1_B1_C1, AKR12A, AKR12B,  AKR12C families of aldo-keto reductase (AKR)	NA|316aa|up_7|NC_009523.1_3864127_3865075_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|91aa|up_6|NC_009523.1_3865081_3865354_-	pfam01649, Ribosomal_S20p, Ribosomal protein S20	NA|571aa|up_5|NC_009523.1_3865471_3867184_+	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|353aa|up_4|NC_009523.1_3868191_3869250_-	PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed	NA|468aa|up_3|NC_009523.1_3869272_3870676_-	PRK06291, PRK06291, aspartate kinase; Provisional	NA|347aa|up_2|NC_009523.1_3870693_3871734_-	PRK07409, PRK07409, threonine synthase; Validated	NA|638aa|up_1|NC_009523.1_3872097_3874011_+	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|601aa|up_0|NC_009523.1_3874086_3875889_+	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only]	NA|464aa|down_0|NC_009523.1_3876333_3877725_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|294aa|down_1|NC_009523.1_3877728_3878610_+	pfam01904, DUF72, Protein of unknown function DUF72	NA|76aa|down_2|NC_009523.1_3878975_3879203_+	NA	NA|435aa|down_3|NC_009523.1_3879288_3880593_+	cd01141, TroA_d, Periplasmic binding protein TroA_d	NA|115aa|down_4|NC_009523.1_3880601_3880946_+	COG3411, COG3411, Ferredoxin [Energy production and conversion]	NA|372aa|down_5|NC_009523.1_3880960_3882076_+	pfam01032, FecCD, FecCD transport family	NA|341aa|down_6|NC_009523.1_3882072_3883095_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|192aa|down_7|NC_009523.1_3883180_3883756_+	NA	NA|276aa|down_8|NC_009523.1_3883775_3884603_-	cd01144, BtuF, Cobalamin binding protein BtuF	NA|132aa|down_9|NC_009523.1_3884608_3885004_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	73	3969053-3969203	70	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GCGTCGCTTCCCCTGGCCAGGAGATTTAGC	30	0	0	NA	NA	NA	2	2	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|417aa|down_4|NC_009523.1_3978063_3979314_+,NA|93aa|down_5|NC_009523.1_3979551_3979830_-	NA|206aa|up_9|NC_009523.1_3953465_3954083_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|293aa|up_8|NC_009523.1_3954886_3955765_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|587aa|up_7|NC_009523.1_3955611_3957372_+	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|372aa|up_6|NC_009523.1_3957368_3958484_+	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|140aa|up_5|NC_009523.1_3959461_3959881_-	PRK11770, PRK11770, YccF domain-containing protein	NA|738aa|up_4|NC_009523.1_3959958_3962172_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|428aa|up_3|NC_009523.1_3962181_3963465_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|276aa|up_2|NC_009523.1_3963540_3964368_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|294aa|up_1|NC_009523.1_3964351_3965233_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|547aa|up_0|NC_009523.1_3965353_3966994_+	pfam04932, Wzy_C, O-Antigen ligase	NA|670aa|down_0|NC_009523.1_3969286_3971296_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|560aa|down_1|NC_009523.1_3971408_3973088_+	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|1061aa|down_2|NC_009523.1_3973268_3976451_+	pfam15902, Sortilin-Vps10, Sortilin, neurotensin receptor 3,	NA|346aa|down_3|NC_009523.1_3976595_3977633_-	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	NA|417aa|down_4|NC_009523.1_3978063_3979314_+	NA	NA|93aa|down_5|NC_009523.1_3979551_3979830_-	NA	NA|441aa|down_6|NC_009523.1_3979934_3981257_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|462aa|down_7|NC_009523.1_3981262_3982648_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|451aa|down_8|NC_009523.1_3982756_3984109_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|330aa|down_9|NC_009523.1_3984180_3985170_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	74	3979642-3979748	71	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	TCCATCGGCAACATCACCCGACACGCGCGCCTGCC	35	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|417aa|up_0|NC_009523.1_3978063_3979314_+,NA|199aa|down_7|NC_009523.1_3989172_3989769_-	NA|738aa|up_9|NC_009523.1_3959958_3962172_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|428aa|up_8|NC_009523.1_3962181_3963465_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|276aa|up_7|NC_009523.1_3963540_3964368_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|294aa|up_6|NC_009523.1_3964351_3965233_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|547aa|up_5|NC_009523.1_3965353_3966994_+	pfam04932, Wzy_C, O-Antigen ligase	NA|670aa|up_4|NC_009523.1_3969286_3971296_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|560aa|up_3|NC_009523.1_3971408_3973088_+	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|1061aa|up_2|NC_009523.1_3973268_3976451_+	pfam15902, Sortilin-Vps10, Sortilin, neurotensin receptor 3,	NA|346aa|up_1|NC_009523.1_3976595_3977633_-	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	NA|417aa|up_0|NC_009523.1_3978063_3979314_+	NA	NA|441aa|down_0|NC_009523.1_3979934_3981257_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|462aa|down_1|NC_009523.1_3981262_3982648_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|451aa|down_2|NC_009523.1_3982756_3984109_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|330aa|down_3|NC_009523.1_3984180_3985170_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|260aa|down_4|NC_009523.1_3985175_3985955_-	pfam12291, DUF3623, Protein of unknown function (DUF3623)	NA|475aa|down_5|NC_009523.1_3986175_3987600_-	cd06176, MFS_BCD_PucC-like, Bacteriochlorophyll delivery (BCD) family, also called PucC family, of the Major Facilitator Superfamily	NA|483aa|down_6|NC_009523.1_3987717_3989166_-	cd16367, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family	NA|199aa|down_7|NC_009523.1_3989172_3989769_-	NA	NA|680aa|down_8|NC_009523.1_3990111_3992151_+	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|253aa|down_9|NC_009523.1_3992306_3993065_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	75	4102869-4102957	72	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	ATCCTTGCCATACGCGAGAGGACTGGGG	28	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|63aa|up_3|NC_009523.1_4094817_4095006_+,NA|64aa|down_4|NC_009523.1_4109757_4109949_-	NA|145aa|up_9|NC_009523.1_4080665_4081100_-	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|1826aa|up_8|NC_009523.1_4081096_4086574_-	TIGR04247, nitrous_oxide_maturation_protein_NosD, nitrous oxide reductase family maturation protein NosD	NA|1440aa|up_7|NC_009523.1_4086587_4090907_-	pfam13229, Beta_helix, Right handed beta helix region	NA|625aa|up_6|NC_009523.1_4091163_4093038_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|159aa|up_5|NC_009523.1_4093657_4094134_+	pfam02674, Colicin_V, Colicin V production protein	NA|105aa|up_4|NC_009523.1_4094488_4094803_+	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|63aa|up_3|NC_009523.1_4094817_4095006_+	NA	NA|291aa|up_2|NC_009523.1_4095510_4096383_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|245aa|up_1|NC_009523.1_4096459_4097194_-	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins	NA|167aa|up_0|NC_009523.1_4097260_4097761_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|458aa|down_0|NC_009523.1_4103394_4104768_-	pfam00656, Peptidase_C14, Caspase domain	NA|321aa|down_1|NC_009523.1_4105000_4105963_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|494aa|down_2|NC_009523.1_4106544_4108026_-	TIGR02014, chlorin_reductase_subunit, chlorophyllide reductase subunit Z	NA|423aa|down_3|NC_009523.1_4108031_4109300_-	cd01980, Chlide_reductase_Y, Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY)	NA|64aa|down_4|NC_009523.1_4109757_4109949_-	NA	NA|249aa|down_5|NC_009523.1_4110021_4110768_-	pfam02596, DUF169, Uncharacterized ArCR, COG2043	NA|393aa|down_6|NC_009523.1_4110879_4112058_-	TIGR02016, Chlorophyllide_reductase_35	NA|324aa|down_7|NC_009523.1_4112196_4113168_-	TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase	NA|162aa|down_8|NC_009523.1_4113179_4113665_-	pfam07284, BCHF, 2-vinyl bacteriochlorophyllide hydratase (BCHF)	NA|282aa|down_9|NC_009523.1_4113961_4114807_+	cd00293, USP_Like, Usp: Universal stress protein family
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	76	4112079-4112187	73	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	AACGCCCAACCTTCAACCTTCAAC	24	1	98	4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163|4112145-4112163	NC_009523.1_1720709-1720727|NC_009523.1_1722694-1722712|NC_009523.1_1724924-1724942|NC_009523.1_1821674-1821692|NC_009523.1_1821724-1821742|NC_009523.1_1821774-1821792|NC_009523.1_1821789-1821807|NC_009523.1_1821804-1821822|NC_009523.1_1821819-1821837|NC_009523.1_1821834-1821852|NC_009523.1_2693347-2693365|NC_009523.1_2693362-2693380|NC_009523.1_4068468-4068486|NC_009523.1_4882185-4882203|NC_009523.1_4882200-4882218|NC_009523.1_4882259-4882277|NC_009523.1_43277-43259|NC_009523.1_710968-710950|NC_009523.1_710990-710972|NC_009523.1_764117-764099|NC_009523.1_2764186-2764168|NC_009523.1_4130766-4130748|NC_009523.1_4130809-4130791|NC_009523.1_4130866-4130848|NC_009523.1_5300760-5300742|NC_009523.1_5300775-5300757|NC_009523.1_5300797-5300779|NC_009523.1_363265-363283|NC_009523.1_917891-917909|NC_009523.1_1564851-1564869|NC_009523.1_1586073-1586091|NC_009523.1_1721877-1721895|NC_009523.1_1724709-1724727|NC_009523.1_1724769-1724787|NC_009523.1_1724836-1724854|NC_009523.1_1724858-1724876|NC_009523.1_1724880-1724898|NC_009523.1_1724902-1724920|NC_009523.1_1729888-1729906|NC_009523.1_1872745-1872763|NC_009523.1_1900632-1900650|NC_009523.1_2368426-2368444|NC_009523.1_2368441-2368459|NC_009523.1_2562826-2562844|NC_009523.1_2562917-2562935|NC_009523.1_4756267-4756285|NC_009523.1_5067480-5067498|NC_009523.1_5067502-5067520|NC_009523.1_5538545-5538563|NC_009523.1_5550601-5550619|NC_009523.1_5550616-5550634|NC_009523.1_5550690-5550708|NC_009523.1_5550705-5550723|NC_009523.1_5551598-5551616|NC_009523.1_43211-43193|NC_009523.1_43233-43215|NC_009523.1_282852-282834|NC_009523.1_282867-282849|NC_009523.1_282882-282864|NC_009523.1_282897-282879|NC_009523.1_282912-282894|NC_009523.1_282935-282917|NC_009523.1_282950-282932|NC_009523.1_3998938-3998920|NC_009523.1_5265510-5265492|NC_009523.1_5267211-5267193|NC_009523.1_5267226-5267208|NC_009523.1_5549992-5549974|NC_009523.1_5550007-5549989|NC_009523.1_5550022-5550004|NC_009523.1_1356126-1356144|NC_009523.1_1356169-1356187|NC_009523.1_1900647-1900665|NC_009523.1_2563022-2563040|NC_009523.1_4656051-4656069|NC_009523.1_4882230-4882248|NC_009523.1_5137025-5137043|NC_009523.1_5538634-5538652|NC_009523.1_5538641-5538659|NC_009523.1_5538649-5538667|NC_009523.1_5538656-5538674|NC_009523.1_5538678-5538696|NC_009523.1_5538685-5538703|NC_009523.1_5538693-5538711|NC_009523.1_5538700-5538718|NC_009523.1_5538729-5538747|NC_009523.1_5550660-5550678|NC_009523.1_5726363-5726381|NC_009523.1_5726385-5726403|NC_009523.1_5726414-5726432|NC_009523.1_43255-43237|NC_009523.1_2314308-2314290|NC_009523.1_3998923-3998905|NC_009523.1_3998953-3998935|NC_009523.1_4727024-4727006|NC_009523.1_4977688-4977670|NC_009523.1_5232224-5232206|NC_009523.1_5267248-5267230	NA	2	2	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|64aa|up_2|NC_009523.1_4109757_4109949_-,NA|41aa|down_8|NC_009523.1_4121237_4121360_-,NA|57aa|down_9|NC_009523.1_4121381_4121552_-	NA|291aa|up_9|NC_009523.1_4095510_4096383_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|245aa|up_8|NC_009523.1_4096459_4097194_-	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins	NA|167aa|up_7|NC_009523.1_4097260_4097761_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|458aa|up_6|NC_009523.1_4103394_4104768_-	pfam00656, Peptidase_C14, Caspase domain	NA|321aa|up_5|NC_009523.1_4105000_4105963_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|494aa|up_4|NC_009523.1_4106544_4108026_-	TIGR02014, chlorin_reductase_subunit, chlorophyllide reductase subunit Z	NA|423aa|up_3|NC_009523.1_4108031_4109300_-	cd01980, Chlide_reductase_Y, Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY)	NA|64aa|up_2|NC_009523.1_4109757_4109949_-	NA	NA|249aa|up_1|NC_009523.1_4110021_4110768_-	pfam02596, DUF169, Uncharacterized ArCR, COG2043	NA|393aa|up_0|NC_009523.1_4110879_4112058_-	TIGR02016, Chlorophyllide_reductase_35	NA|324aa|down_0|NC_009523.1_4112196_4113168_-	TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase	NA|162aa|down_1|NC_009523.1_4113179_4113665_-	pfam07284, BCHF, 2-vinyl bacteriochlorophyllide hydratase (BCHF)	NA|282aa|down_2|NC_009523.1_4113961_4114807_+	cd00293, USP_Like, Usp: Universal stress protein family	NA|254aa|down_3|NC_009523.1_4114859_4115621_-	pfam12291, DUF3623, Protein of unknown function (DUF3623)	NA|407aa|down_4|NC_009523.1_4115656_4116877_-	TIGR02023, geranylgeranyl_bacteriochlorophyll_reductase, geranylgeranyl reductase	NA|305aa|down_5|NC_009523.1_4117013_4117928_-	PRK07566, PRK07566, chlorophyll synthase ChlG	NA|321aa|down_6|NC_009523.1_4118065_4119028_-	cd09224, CytoC_RC, Cytochrome C subunit of the bacterial photosynthetic reaction center	NA|644aa|down_7|NC_009523.1_4119126_4121058_-	PRK14505, PRK14505, bifunctional photosynthetic reaction center subunit L/M; Provisional	NA|41aa|down_8|NC_009523.1_4121237_4121360_-	NA	NA|57aa|down_9|NC_009523.1_4121381_4121552_-	NA
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	77	4182383-4182474	74	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	ATAGCCCGCACAGGCGGGCTTTGC	24	1	5	4182407-4182450|4182407-4182450|4182407-4182450|4182407-4182450|4182407-4182450	NC_009523.1_771745-771788|NC_009523.1_1483976-1483933|NC_009523.1_1009282-1009325|NC_009523.1_2327145-2327102|NC_009523.1_4366138-4366095	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA	NA|402aa|up_9|NC_009523.1_4173331_4174537_+	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|85aa|up_8|NC_009523.1_4174633_4174888_+	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|195aa|up_7|NC_009523.1_4174911_4175496_+	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|142aa|up_6|NC_009523.1_4175521_4175947_+	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|241aa|up_5|NC_009523.1_4176000_4176723_+	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|187aa|up_4|NC_009523.1_4176954_4177515_+	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|141aa|up_3|NC_009523.1_4177597_4178020_+	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|402aa|up_2|NC_009523.1_4178383_4179589_-	COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	NA|371aa|up_1|NC_009523.1_4179730_4180843_+	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|407aa|up_0|NC_009523.1_4180854_4182075_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|306aa|down_0|NC_009523.1_4182654_4183572_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|301aa|down_1|NC_009523.1_4183640_4184543_-	cd07438, PHP_HisPPase_AMP, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound	NA|579aa|down_2|NC_009523.1_4184641_4186378_-	PRK05537, PRK05537, bifunctional sulfate adenylyltransferase/adenylylsulfate kinase	NA|469aa|down_3|NC_009523.1_4186391_4187798_-	COG3379, COG3379, Uncharacterized conserved protein [Function unknown]	NA|277aa|down_4|NC_009523.1_4188052_4188883_-	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed	NA|513aa|down_5|NC_009523.1_4188886_4190425_-	cd16148, sulfatase_like, uncharacterized sulfatase subfamily	NA|485aa|down_6|NC_009523.1_4190626_4192081_+	PRK12273, aspA, aspartate ammonia-lyase; Provisional	NA|364aa|down_7|NC_009523.1_4192173_4193265_+	cd02035, ArsA, Arsenical pump-driving ATPase ArsA	NA|242aa|down_8|NC_009523.1_4193278_4194004_-	pfam00412, LIM, LIM domain	NA|257aa|down_9|NC_009523.1_4194221_4194992_+	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	78	4198466-4199161	10	CRT	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	CGNNNGCGTCGGCGTATT	18	0	0	NA	NA	NA	13	13	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA	NA|469aa|up_9|NC_009523.1_4186391_4187798_-	COG3379, COG3379, Uncharacterized conserved protein [Function unknown]	NA|277aa|up_8|NC_009523.1_4188052_4188883_-	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed	NA|513aa|up_7|NC_009523.1_4188886_4190425_-	cd16148, sulfatase_like, uncharacterized sulfatase subfamily	NA|485aa|up_6|NC_009523.1_4190626_4192081_+	PRK12273, aspA, aspartate ammonia-lyase; Provisional	NA|364aa|up_5|NC_009523.1_4192173_4193265_+	cd02035, ArsA, Arsenical pump-driving ATPase ArsA	NA|242aa|up_4|NC_009523.1_4193278_4194004_-	pfam00412, LIM, LIM domain	NA|257aa|up_3|NC_009523.1_4194221_4194992_+	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|369aa|up_2|NC_009523.1_4195006_4196114_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|393aa|up_1|NC_009523.1_4196183_4197362_-	pfam13400, Tad, Putative Flp pilus-assembly TadE/G-like	NA|133aa|up_0|NC_009523.1_4197358_4197757_-	pfam07811, TadE, TadE-like protein	NA|430aa|down_0|NC_009523.1_4199766_4201056_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|310aa|down_1|NC_009523.1_4201052_4201982_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|324aa|down_2|NC_009523.1_4201981_4202953_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|472aa|down_3|NC_009523.1_4202966_4204382_-	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|420aa|down_4|NC_009523.1_4204396_4205656_-	cd03111, CpaE-like, pilus assembly ATPase CpaE	NA|261aa|down_5|NC_009523.1_4205693_4206476_-	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|123aa|down_6|NC_009523.1_4207009_4207378_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|402aa|down_7|NC_009523.1_4207568_4208774_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|292aa|down_8|NC_009523.1_4208785_4209661_+	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs)	NA|102aa|down_9|NC_009523.1_4209895_4210201_+	PRK09301, PRK09301, circadian clock protein KaiB; Provisional
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	79	4336397-4336490	75	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	TTATGGTCTTTGAGTACATAATCCGC	26	1	22	4336423-4336464|4336423-4336464|4336423-4336464|4336423-4336464|4336423-4336464|4336423-4336464|4336423-4336464|4336423-4336464|4336423-4336464|4336423-4336464|4336423-4336464|4336423-4336464|4336423-4336464|4336423-4336464|4336423-4336464|4336423-4336464|4336423-4336464|4336423-4336464|4336423-4336464|4336423-4336464|4336423-4336464|4336423-4336464	NC_009523.1_197774-197733|NC_009523.1_197930-197889|NC_009523.1_991802-991843|NC_009523.1_1132335-1132376|NC_009523.1_2622570-2622529|NC_009523.1_3496298-3496257|NC_009523.1_17794-17753|NC_009523.1_720625-720666|NC_009523.1_723037-723078|NC_009523.1_983123-983082|NC_009523.1_1829441-1829482|NC_009523.1_1877117-1877076|NC_009523.1_2171045-2171086|NC_009523.1_2230879-2230838|NC_009523.1_2491853-2491812|NC_009523.1_2623716-2623675|NC_009523.1_2884865-2884906|NC_009523.1_3484808-3484767|NC_009523.1_3484876-3484835|NC_009523.1_3852354-3852395|NC_009523.1_4327557-4327516|NC_009523.1_5096011-5095970	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|71aa|up_7|NC_009523.1_4328304_4328517_-,NA|47aa|down_7|NC_009523.1_4343934_4344075_+	NA|83aa|up_9|NC_009523.1_4327752_4328001_-	COG2361, COG2361, Uncharacterized conserved protein [Function unknown]	NA|99aa|up_8|NC_009523.1_4327987_4328284_-	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|71aa|up_7|NC_009523.1_4328304_4328517_-	NA	NA|358aa|up_6|NC_009523.1_4328623_4329697_-	sd00006, TPR, Tetratricopeptide repeat	NA|575aa|up_5|NC_009523.1_4329778_4331503_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|262aa|up_4|NC_009523.1_4331949_4332735_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|199aa|up_3|NC_009523.1_4332746_4333343_-	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family	NA|218aa|up_2|NC_009523.1_4333588_4334242_+	COG3828, COG3828, Uncharacterized protein conserved in bacteria [Function unknown]	NA|369aa|up_1|NC_009523.1_4334257_4335364_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|327aa|up_0|NC_009523.1_4335373_4336354_+	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	NA|214aa|down_0|NC_009523.1_4336844_4337486_-	COG2316, COG2316, Predicted hydrolase (HD superfamily) [General function prediction only]	NA|99aa|down_1|NC_009523.1_4337634_4337931_-	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|253aa|down_2|NC_009523.1_4338038_4338797_-	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3	NA|371aa|down_3|NC_009523.1_4338814_4339927_-	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ	NA|613aa|down_4|NC_009523.1_4339965_4341804_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|205aa|down_5|NC_009523.1_4341796_4342411_-	pfam01025, GrpE, GrpE	NA|360aa|down_6|NC_009523.1_4342442_4343522_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|47aa|down_7|NC_009523.1_4343934_4344075_+	NA	NA|163aa|down_8|NC_009523.1_4344361_4344850_+	cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|164aa|down_9|NC_009523.1_4344886_4345378_+	cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	80	4347572-4347653	76	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GCGATGCGCCAACACGACCGGTGGCAGC	28	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|47aa|up_3|NC_009523.1_4343934_4344075_+,NA|46aa|down_4|NC_009523.1_4352290_4352428_+,NA|134aa|down_7|NC_009523.1_4355652_4356054_-	NA|99aa|up_9|NC_009523.1_4337634_4337931_-	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|253aa|up_8|NC_009523.1_4338038_4338797_-	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3	NA|371aa|up_7|NC_009523.1_4338814_4339927_-	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ	NA|613aa|up_6|NC_009523.1_4339965_4341804_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|205aa|up_5|NC_009523.1_4341796_4342411_-	pfam01025, GrpE, GrpE	NA|360aa|up_4|NC_009523.1_4342442_4343522_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|47aa|up_3|NC_009523.1_4343934_4344075_+	NA	NA|163aa|up_2|NC_009523.1_4344361_4344850_+	cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|164aa|up_1|NC_009523.1_4344886_4345378_+	cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily	NA|425aa|up_0|NC_009523.1_4345390_4346665_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|416aa|down_0|NC_009523.1_4348118_4349366_-	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II	NA|325aa|down_1|NC_009523.1_4349452_4350427_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|81aa|down_2|NC_009523.1_4350686_4350929_+	pfam06153, CdAMP_rec, Cyclic-di-AMP receptor	NA|391aa|down_3|NC_009523.1_4350925_4352098_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|46aa|down_4|NC_009523.1_4352290_4352428_+	NA	NA|428aa|down_5|NC_009523.1_4352697_4353981_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|423aa|down_6|NC_009523.1_4354315_4355584_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|134aa|down_7|NC_009523.1_4355652_4356054_-	NA	NA|560aa|down_8|NC_009523.1_4356469_4358149_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|381aa|down_9|NC_009523.1_4358457_4359600_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	81	4371336-4371425	77	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	ATGGACTTTGAATAAATAATCCGC	24	1	32	4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401|4371360-4371401	NC_009523.1_17792-17751|NC_009523.1_723039-723080|NC_009523.1_487993-487952|NC_009523.1_1770091-1770050|NC_009523.1_2137801-2137760|NC_009523.1_2192350-2192309|NC_009523.1_2623782-2623741|NC_009523.1_1195349-1195390|NC_009523.1_2891821-2891862|NC_009523.1_3064485-3064526|NC_009523.1_5132772-5132813|NC_009523.1_336193-336152|NC_009523.1_375434-375393|NC_009523.1_3282639-3282598|NC_009523.1_3913863-3913822|NC_009523.1_4429421-4429380|NC_009523.1_4429657-4429616|NC_009523.1_5135537-5135496|NC_009523.1_5321622-5321581|NC_009523.1_5616994-5616953|NC_009523.1_580236-580277|NC_009523.1_916962-917003|NC_009523.1_988127-988168|NC_009523.1_1977498-1977539|NC_009523.1_2202123-2202164|NC_009523.1_2497883-2497924|NC_009523.1_2498265-2498306|NC_009523.1_2543527-2543568|NC_009523.1_4331639-4331680|NC_009523.1_4336493-4336534|NC_009523.1_4846785-4846826|NC_009523.1_5230715-5230756	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|154aa|up_5|NC_009523.1_4366742_4367204_+,NA|123aa|up_2|NC_009523.1_4368724_4369093_+,NA|327aa|down_1|NC_009523.1_4374721_4375702_+,NA|232aa|down_4|NC_009523.1_4379064_4379760_+	NA|251aa|up_9|NC_009523.1_4359596_4360349_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|276aa|up_8|NC_009523.1_4360604_4361432_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|270aa|up_7|NC_009523.1_4361906_4362716_-	pfam04264, YceI, YceI-like domain	NA|916aa|up_6|NC_009523.1_4362882_4365630_+	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]	NA|154aa|up_5|NC_009523.1_4366742_4367204_+	NA	NA|204aa|up_4|NC_009523.1_4367322_4367934_+	pfam04314, PCuAC, Copper chaperone PCu(A)C	NA|176aa|up_3|NC_009523.1_4368200_4368728_+	pfam14358, DUF4405, Domain of unknown function (DUF4405)	NA|123aa|up_2|NC_009523.1_4368724_4369093_+	NA	NA|237aa|up_1|NC_009523.1_4369089_4369800_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|472aa|up_0|NC_009523.1_4369802_4371218_+	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS	NA|429aa|down_0|NC_009523.1_4373038_4374325_-	cd06116, CaCS_like, Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like	NA|327aa|down_1|NC_009523.1_4374721_4375702_+	NA	NA|466aa|down_2|NC_009523.1_4375756_4377154_-	cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like	NA|361aa|down_3|NC_009523.1_4377503_4378586_+	smart01043, BTAD, Bacterial transcriptional activator domain	NA|232aa|down_4|NC_009523.1_4379064_4379760_+	NA	NA|93aa|down_5|NC_009523.1_4379840_4380119_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|94aa|down_6|NC_009523.1_4380161_4380443_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|1556aa|down_7|NC_009523.1_4380499_4385167_+	TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC, C-terminal domain	NA|284aa|down_8|NC_009523.1_4385159_4386011_+	pfam00498, FHA, FHA domain	NA|409aa|down_9|NC_009523.1_4386007_4387234_+	TIGR03436, acidobact_VWFA, VWFA-related Acidobacterial domain
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	82	4448116-4448206	78	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GGCAAGATGCCCTCGCTCCCAGGAGCAATGTGA	33	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|194aa|down_5|NC_009523.1_4453186_4453768_+,NA|146aa|down_8|NC_009523.1_4455160_4455598_+,NA|166aa|down_9|NC_009523.1_4455585_4456083_+	NA|236aa|up_9|NC_009523.1_4435700_4436408_-	PRK07569, PRK07569, bidirectional hydrogenase complex protein HoxU; Validated	NA|538aa|up_8|NC_009523.1_4436428_4438042_-	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]	NA|179aa|up_7|NC_009523.1_4438274_4438811_-	PRK07571, PRK07571, bidirectional hydrogenase complex protein HoxE; Reviewed	NA|967aa|up_6|NC_009523.1_4438959_4441860_+	cd01465, vWA_subgroup, VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|664aa|up_5|NC_009523.1_4441878_4443870_-	pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127	NA|237aa|up_4|NC_009523.1_4444176_4444887_-	pfam18029, Glyoxalase_6, Glyoxalase-like domain	NA|134aa|up_3|NC_009523.1_4444962_4445364_-	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV	NA|189aa|up_2|NC_009523.1_4445399_4445966_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|239aa|up_1|NC_009523.1_4446094_4446811_+	TIGR04123, hypothetical_protein, metallophosphoesterase, DNA ligase-associated	NA|416aa|up_0|NC_009523.1_4446731_4447979_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|313aa|down_0|NC_009523.1_4448370_4449309_+	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion]	NA|106aa|down_1|NC_009523.1_4449707_4450025_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|204aa|down_2|NC_009523.1_4450066_4450678_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|204aa|down_3|NC_009523.1_4450734_4451346_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|159aa|down_4|NC_009523.1_4451796_4452273_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|194aa|down_5|NC_009523.1_4453186_4453768_+	NA	NA|98aa|down_6|NC_009523.1_4454520_4454814_+	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|118aa|down_7|NC_009523.1_4454810_4455164_+	COG2361, COG2361, Uncharacterized conserved protein [Function unknown]	NA|146aa|down_8|NC_009523.1_4455160_4455598_+	NA	NA|166aa|down_9|NC_009523.1_4455585_4456083_+	NA
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	83	4462856-4462941	79	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	CGCGCCTCACGCGGCGACCGAAATGA	26	1	6	4462882-4462915|4462882-4462915|4462882-4462915|4462882-4462915|4462882-4462915|4462882-4462915	NC_009523.1_186689-186656|NC_009523.1_3715780-3715747|NC_009523.1_4483848-4483815|NC_009523.1_2309986-2310019|NC_009523.1_4406610-4406643|NC_009523.1_4860920-4860953	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|194aa|up_5|NC_009523.1_4453186_4453768_+,NA|146aa|up_2|NC_009523.1_4455160_4455598_+,NA|166aa|up_1|NC_009523.1_4455585_4456083_+,NA|128aa|down_3|NC_009523.1_4466333_4466717_+,NA|116aa|down_5|NC_009523.1_4467703_4468051_+,NA|128aa|down_8|NC_009523.1_4469511_4469895_+,NA|172aa|down_9|NC_009523.1_4469897_4470413_+	NA|106aa|up_9|NC_009523.1_4449707_4450025_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|204aa|up_8|NC_009523.1_4450066_4450678_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|204aa|up_7|NC_009523.1_4450734_4451346_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|159aa|up_6|NC_009523.1_4451796_4452273_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|194aa|up_5|NC_009523.1_4453186_4453768_+	NA	NA|98aa|up_4|NC_009523.1_4454520_4454814_+	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|118aa|up_3|NC_009523.1_4454810_4455164_+	COG2361, COG2361, Uncharacterized conserved protein [Function unknown]	NA|146aa|up_2|NC_009523.1_4455160_4455598_+	NA	NA|166aa|up_1|NC_009523.1_4455585_4456083_+	NA	NA|1123aa|up_0|NC_009523.1_4458923_4462292_+	COG1483, COG1483, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|271aa|down_0|NC_009523.1_4463380_4464193_+	PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional	NA|361aa|down_1|NC_009523.1_4464173_4465256_+	cd01149, HutB, Hemin binding protein HutB	NA|355aa|down_2|NC_009523.1_4465252_4466317_+	pfam01032, FecCD, FecCD transport family	NA|128aa|down_3|NC_009523.1_4466333_4466717_+	NA	NA|322aa|down_4|NC_009523.1_4466741_4467707_+	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|116aa|down_5|NC_009523.1_4467703_4468051_+	NA	NA|120aa|down_6|NC_009523.1_4468047_4468407_+	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|320aa|down_7|NC_009523.1_4468451_4469411_+	pfam01032, FecCD, FecCD transport family	NA|128aa|down_8|NC_009523.1_4469511_4469895_+	NA	NA|172aa|down_9|NC_009523.1_4469897_4470413_+	NA
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	84	4536914-4537009	80	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	TATAGCCCGCGCAGGCGGGCTTTGCCTT	28	1	12	4536942-4536981|4536942-4536981|4536942-4536981|4536942-4536981|4536942-4536981|4536942-4536981|4536942-4536981|4536942-4536981|4536942-4536981|4536942-4536981|4536942-4536981|4536942-4536981	NC_009523.1_1257863-1257902|NC_009523.1_4699923-4699962|NC_009523.1_1462437-1462398|NC_009523.1_1827437-1827476|NC_009523.1_3652892-3652931|NC_009523.1_4126100-4126061|NC_009523.1_814552-814591|NC_009523.1_2150387-2150426|NC_009523.1_5469767-5469806|NC_009523.1_268591-268552|NC_009523.1_268659-268620|NC_009523.1_335924-335885	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|358aa|down_5|NC_009523.1_4544481_4545555_-,NA|46aa|down_7|NC_009523.1_4547525_4547663_+,NA|46aa|down_8|NC_009523.1_4547785_4547923_+	NA|303aa|up_9|NC_009523.1_4524256_4525165_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|336aa|up_8|NC_009523.1_4525204_4526212_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|423aa|up_7|NC_009523.1_4526276_4527545_-	TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL	NA|337aa|up_6|NC_009523.1_4527696_4528707_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|105aa|up_5|NC_009523.1_4528777_4529092_-	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|666aa|up_4|NC_009523.1_4529113_4531111_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|637aa|up_3|NC_009523.1_4531121_4533032_-	COG5542, COG5542, Predicted integral membrane protein [Function unknown]	NA|936aa|up_2|NC_009523.1_4533084_4535892_+	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|206aa|up_1|NC_009523.1_4535892_4536510_-	pfam01832, Glucosaminidase, Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA|71aa|up_0|NC_009523.1_4536593_4536806_+	pfam04255, DUF433, Protein of unknown function (DUF433)	NA|941aa|down_0|NC_009523.1_4537133_4539956_-	pfam17210, SdrD_B, SdrD B-like domain	NA|374aa|down_1|NC_009523.1_4539979_4541101_-	TIGR04039, MXAN_0977_Heme2, di-heme enzyme, MXAN_0977 family	NA|133aa|down_2|NC_009523.1_4541342_4541741_+	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|321aa|down_3|NC_009523.1_4542022_4542985_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|265aa|down_4|NC_009523.1_4543781_4544576_+	cd04584, CBS_pair_AcuB_like, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the ACT domain	NA|358aa|down_5|NC_009523.1_4544481_4545555_-	NA	NA|596aa|down_6|NC_009523.1_4545551_4547339_-	pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme domain	NA|46aa|down_7|NC_009523.1_4547525_4547663_+	NA	NA|46aa|down_8|NC_009523.1_4547785_4547923_+	NA	NA|481aa|down_9|NC_009523.1_4548751_4550194_+	cd05387, BY-kinase, bacterial tyrosine-kinase
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	85	4584105-4584268	81	CRISPRCasFinder	no	cas3	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Unclear	GAGAGCGCTGACGGTGGTGAGGCGCAAACGGTTGATACGCATATCGATAGCGC	53	0	0	NA	NA	NA	1	1	Unclear	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|120aa|up_4|NC_009523.1_4574141_4574501_-,NA|231aa|down_5|NC_009523.1_4591090_4591783_-,NA|51aa|down_7|NC_009523.1_4593364_4593517_-	NA|363aa|up_9|NC_009523.1_4566947_4568036_+	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain	NA|404aa|up_8|NC_009523.1_4568122_4569334_+	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|220aa|up_7|NC_009523.1_4569342_4570002_+	cd06259, YdcF-like, YdcF-like	NA|657aa|up_6|NC_009523.1_4570045_4572016_+	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|322aa|up_5|NC_009523.1_4572399_4573365_+	cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs	NA|120aa|up_4|NC_009523.1_4574141_4574501_-	NA	NA|434aa|up_3|NC_009523.1_4574732_4576034_-	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|221aa|up_2|NC_009523.1_4576061_4576724_-	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators	NA|600aa|up_1|NC_009523.1_4576891_4578691_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	cas3|1266aa|up_0|NC_009523.1_4578721_4582519_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|220aa|down_0|NC_009523.1_4584386_4585046_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|437aa|down_1|NC_009523.1_4585064_4586375_+	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|299aa|down_2|NC_009523.1_4586393_4587290_+	PRK07432, PRK07432, S-methyl-5'-thioadenosine phosphorylase	NA|358aa|down_3|NC_009523.1_4589321_4590395_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|234aa|down_4|NC_009523.1_4590423_4591125_-	pfam02517, Abi, CAAX protease self-immunity	NA|231aa|down_5|NC_009523.1_4591090_4591783_-	NA	NA|170aa|down_6|NC_009523.1_4592215_4592725_-	pfam01035, DNA_binding_1, 6-O-methylguanine DNA methyltransferase, DNA binding domain	NA|51aa|down_7|NC_009523.1_4593364_4593517_-	NA	NA|1556aa|down_8|NC_009523.1_4594742_4599410_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|505aa|down_9|NC_009523.1_4599417_4600932_+	pfam18731, HEPN_Swt1, Swt1-like HEPN
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	86	4629109-4629197	82	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GGATGTCCCGCACGTCCACGGAACGGCT	28	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA	NA|314aa|up_9|NC_009523.1_4616889_4617831_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|377aa|up_8|NC_009523.1_4618503_4619634_-	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit	NA|153aa|up_7|NC_009523.1_4619649_4620108_-	cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase	NA|115aa|up_6|NC_009523.1_4620107_4620452_-	pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain	NA|501aa|up_5|NC_009523.1_4620590_4622093_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|302aa|up_4|NC_009523.1_4622342_4623248_+	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|175aa|up_3|NC_009523.1_4623294_4623819_-	pfam03703, bPH_2, Bacterial PH domain	NA|416aa|up_2|NC_009523.1_4623837_4625085_-	PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|418aa|up_1|NC_009523.1_4625093_4626347_-	PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|259aa|up_0|NC_009523.1_4626518_4627295_-	cd01641, Bacterial_IMPase_like_1, Predominantly bacterial family of Mg++ dependend phosphatases, related to inositol monophosphatases	NA|321aa|down_0|NC_009523.1_4630800_4631763_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|575aa|down_1|NC_009523.1_4631877_4633602_-	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|671aa|down_2|NC_009523.1_4633731_4635744_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|1086aa|down_3|NC_009523.1_4637359_4640617_+	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|167aa|down_4|NC_009523.1_4640623_4641124_-	pfam04191, PEMT, Phospholipid methyltransferase	NA|321aa|down_5|NC_009523.1_4641232_4642195_+	COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]	NA|320aa|down_6|NC_009523.1_4642220_4643180_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|331aa|down_7|NC_009523.1_4643247_4644240_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|333aa|down_8|NC_009523.1_4644334_4645333_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|598aa|down_9|NC_009523.1_4645406_4647200_-	smart00633, Glyco_10, Glycosyl hydrolase family 10
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	87	4652676-4652769	83	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	ACGGGCGCAGCAGCGCTGCGCCTC	24	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|290aa|down_7|NC_009523.1_4661903_4662773_+,NA|204aa|down_8|NC_009523.1_4662875_4663487_+,NA|192aa|down_9|NC_009523.1_4663490_4664066_-	NA|167aa|up_9|NC_009523.1_4640623_4641124_-	pfam04191, PEMT, Phospholipid methyltransferase	NA|321aa|up_8|NC_009523.1_4641232_4642195_+	COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]	NA|320aa|up_7|NC_009523.1_4642220_4643180_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|331aa|up_6|NC_009523.1_4643247_4644240_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|333aa|up_5|NC_009523.1_4644334_4645333_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|598aa|up_4|NC_009523.1_4645406_4647200_-	smart00633, Glyco_10, Glycosyl hydrolase family 10	NA|602aa|up_3|NC_009523.1_4647345_4649151_-	cd19608, GH113_mannanase-like, Glycoside hydrolase family 113 beta-1,4-mannanase and similar proteins	NA|390aa|up_2|NC_009523.1_4649283_4650453_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|413aa|up_1|NC_009523.1_4650664_4651903_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|201aa|up_0|NC_009523.1_4651992_4652595_-	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase	NA|709aa|down_0|NC_009523.1_4652855_4654982_-	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|209aa|down_1|NC_009523.1_4656142_4656769_-	pfam07187, DUF1405, Protein of unknown function (DUF1405)	NA|192aa|down_2|NC_009523.1_4657042_4657618_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|164aa|down_3|NC_009523.1_4657678_4658170_-	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|128aa|down_4|NC_009523.1_4658273_4658657_-	pfam13646, HEAT_2, HEAT repeats	NA|647aa|down_5|NC_009523.1_4658677_4660618_-	cd11352, AmyAc_5, Alpha amylase catalytic domain found in an uncharacterized protein family	NA|278aa|down_6|NC_009523.1_4660829_4661663_+	PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional	NA|290aa|down_7|NC_009523.1_4661903_4662773_+	NA	NA|204aa|down_8|NC_009523.1_4662875_4663487_+	NA	NA|192aa|down_9|NC_009523.1_4663490_4664066_-	NA
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	88	4772918-4773016	84	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GGTAGAGCCCGCGCAGGCGGGCTTCGCCTTG	31	1	21	4772949-4772985|4772949-4772985|4772949-4772985|4772949-4772985|4772949-4772985|4772949-4772985|4772949-4772985|4772949-4772985|4772949-4772985|4772949-4772985|4772949-4772985|4772949-4772985|4772949-4772985|4772949-4772985|4772949-4772985|4772949-4772985|4772949-4772985|4772949-4772985|4772949-4772985|4772949-4772985|4772949-4772985	NC_009523.1_1483972-1483936|NC_009523.1_232626-232662|NC_009523.1_536424-536388|NC_009523.1_771749-771785|NC_009523.1_1787808-1787772|NC_009523.1_1877234-1877198|NC_009523.1_2230850-2230814|NC_009523.1_2327141-2327105|NC_009523.1_2825376-2825412|NC_009523.1_4859233-4859269|NC_009523.1_5132663-5132699|NC_009523.1_488102-488066|NC_009523.1_988086-988122|NC_009523.1_1857620-1857584|NC_009523.1_1877166-1877130|NC_009523.1_2502067-2502103|NC_009523.1_2884826-2884862|NC_009523.1_3282680-3282644|NC_009523.1_3475749-3475713|NC_009523.1_3639576-3639540|NC_009523.1_5585981-5586017	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA|222aa|down_9|NC_009523.1_4786792_4787458_-	NA|87aa|up_9|NC_009523.1_4760553_4760814_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|506aa|up_8|NC_009523.1_4761649_4763167_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|386aa|up_7|NC_009523.1_4763191_4764349_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|204aa|up_6|NC_009523.1_4764345_4764957_-	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|189aa|up_5|NC_009523.1_4765272_4765839_-	TIGR02952, RNA_polymerase_sigma-70_factor_ECF_subfamily, RNA polymerase sigma-70 factor, TIGR02952 family	NA|219aa|up_4|NC_009523.1_4765980_4766637_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA|225aa|up_3|NC_009523.1_4766661_4767336_+	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|255aa|up_2|NC_009523.1_4767346_4768111_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|128aa|up_1|NC_009523.1_4769486_4769870_-	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs)	NA|784aa|up_0|NC_009523.1_4770228_4772580_+	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|798aa|down_0|NC_009523.1_4773116_4775510_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|393aa|down_1|NC_009523.1_4775599_4776778_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|229aa|down_2|NC_009523.1_4776810_4777497_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|392aa|down_3|NC_009523.1_4777592_4778768_-	PRK05101, PRK05101, galactokinase; Provisional	NA|746aa|down_4|NC_009523.1_4779002_4781240_+	pfam03170, BcsB, Bacterial cellulose synthase subunit	NA|954aa|down_5|NC_009523.1_4781404_4784266_+	pfam18582, HZS_alpha, Hydrazine synthase alpha subunit middle domain	NA|292aa|down_6|NC_009523.1_4784274_4785150_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|80aa|down_7|NC_009523.1_4785547_4785787_+	pfam10049, DUF2283, Protein of unknown function (DUF2283)	NA|257aa|down_8|NC_009523.1_4786025_4786796_-	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional	NA|222aa|down_9|NC_009523.1_4786792_4787458_-	NA
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	89	4887367-4887505	85	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	TTCTCTCGTTTTGGGCTTCAGGACGCCCAGACTCCCCCTTCTC	43	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|210aa|up_3|NC_009523.1_4885175_4885805_+,NA|115aa|up_2|NC_009523.1_4885801_4886146_+,NA	NA|329aa|up_9|NC_009523.1_4879701_4880688_-	cd19082, AKR_AKR10A1_2, AKR10A family of aldo-keto reductase (AKR)	NA|330aa|up_8|NC_009523.1_4880708_4881698_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|149aa|up_7|NC_009523.1_4881720_4882167_-	pfam13115, YtkA, YtkA-like	NA|332aa|up_6|NC_009523.1_4882275_4883271_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|312aa|up_5|NC_009523.1_4883267_4884203_-	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|206aa|up_4|NC_009523.1_4884355_4884973_-	PRK13582, thrH, bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH	NA|210aa|up_3|NC_009523.1_4885175_4885805_+	NA	NA|115aa|up_2|NC_009523.1_4885801_4886146_+	NA	NA|135aa|up_1|NC_009523.1_4886539_4886944_-	cd18745, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|78aa|up_0|NC_009523.1_4886940_4887174_-	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown]	NA|710aa|down_0|NC_009523.1_4887616_4889746_-	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase	NA|807aa|down_1|NC_009523.1_4889790_4892211_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|690aa|down_2|NC_009523.1_4892251_4894321_+	pfam12770, CHAT, CHAT domain	NA|1151aa|down_3|NC_009523.1_4894323_4897776_+	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|394aa|down_4|NC_009523.1_4897788_4898970_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|131aa|down_5|NC_009523.1_4899302_4899695_+	COG2018, COG2018, Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]	NA|183aa|down_6|NC_009523.1_4899861_4900410_+	cd14763, SSDgbs_1, Sensor single-domain globins; uncharacterized bacterial subgroup	NA|252aa|down_7|NC_009523.1_4900436_4901192_+	pfam14332, DUF4388, Domain of unknown function (DUF4388)	NA|178aa|down_8|NC_009523.1_4901209_4901743_+	COG2229, COG2229, Predicted GTPase [General function prediction only]	NA|170aa|down_9|NC_009523.1_4902020_4902530_+	cd00886, MogA_MoaB, MogA_MoaB family
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	90	4977816-4977919	86	CRISPRCasFinder	no	csx1	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	CCTGCCGCCTTTCACCTTTGCACCT	25	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|53aa|up_7|NC_009523.1_4970060_4970219_+,NA|622aa|up_6|NC_009523.1_4970215_4972081_+,NA|52aa|up_0|NC_009523.1_4975983_4976139_+,NA|123aa|down_8|NC_009523.1_4989760_4990129_-	NA|58aa|up_9|NC_009523.1_4965563_4965737_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|515aa|up_8|NC_009523.1_4966078_4967623_-	COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]	NA|53aa|up_7|NC_009523.1_4970060_4970219_+	NA	NA|622aa|up_6|NC_009523.1_4970215_4972081_+	NA	NA|310aa|up_5|NC_009523.1_4972093_4973023_+	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]	NA|264aa|up_4|NC_009523.1_4973029_4973821_+	pfam02585, PIG-L, GlcNAc-PI de-N-acetylase	NA|367aa|up_3|NC_009523.1_4973805_4974906_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|90aa|up_2|NC_009523.1_4974911_4975181_+	pfam09969, DUF2203, Uncharacterized conserved protein (DUF2203)	NA|259aa|up_1|NC_009523.1_4975177_4975954_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|52aa|up_0|NC_009523.1_4975983_4976139_+	NA	NA|1069aa|down_0|NC_009523.1_4978645_4981852_-	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	NA|254aa|down_1|NC_009523.1_4982037_4982799_+	pfam13462, Thioredoxin_4, Thioredoxin	NA|469aa|down_2|NC_009523.1_4983253_4984660_+	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|325aa|down_3|NC_009523.1_4984673_4985648_+	PRK13022, secF, protein translocase subunit SecF	NA|246aa|down_4|NC_009523.1_4985743_4986481_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|372aa|down_5|NC_009523.1_4986641_4987757_-	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|238aa|down_6|NC_009523.1_4987844_4988558_+	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	csx1|398aa|down_7|NC_009523.1_4988554_4989748_-	pfam09002, DUF1887, Domain of unknown function (DUF1887)	NA|123aa|down_8|NC_009523.1_4989760_4990129_-	NA	NA|430aa|down_9|NC_009523.1_4990125_4991415_-	cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	91	5018420-5018539	87	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	CAGCGCGGCTCGCACGCGCGACGCTCGCGCACACAGG	37	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|127aa|up_9|NC_009523.1_5006503_5006884_+,NA|137aa|up_4|NC_009523.1_5011636_5012047_+,NA	NA|127aa|up_9|NC_009523.1_5006503_5006884_+	NA	NA|254aa|up_8|NC_009523.1_5006913_5007675_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|404aa|up_7|NC_009523.1_5007691_5008903_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|397aa|up_6|NC_009523.1_5008906_5010097_-	COG4597, BatB, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|390aa|up_5|NC_009523.1_5010166_5011336_-	cd13692, PBP2_BztA, Substrate bindng domain of ABC glutamate/glutamine/aspartate/asparagine transporter; the type 2 periplasmic binding protein fold	NA|137aa|up_4|NC_009523.1_5011636_5012047_+	NA	NA|977aa|up_3|NC_009523.1_5012043_5014974_+	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|93aa|up_2|NC_009523.1_5015092_5015371_+	cd13831, HU, histone-like DNA-binding protein HU	NA|513aa|up_1|NC_009523.1_5015549_5017088_+	cd10453, GIY-YIG_RE_Cfr42I, Catalytic GIY-YIG domain of type II restriction enzyme R	NA|404aa|up_0|NC_009523.1_5017107_5018319_+	cd13682, PBP2_TRAP_alpha-ketoacid, Substrate-binding component of an alpha-keto acid binding Tripartite ATP-independent Periplasmic transporter and related proteins; contains the type 2 periplasmic-binding protein fold	NA|357aa|down_0|NC_009523.1_5018826_5019897_-	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins	NA|172aa|down_1|NC_009523.1_5019981_5020497_-	pfam14317, YcxB, YcxB-like protein	NA|204aa|down_2|NC_009523.1_5020493_5021105_-	pfam01476, LysM, LysM domain	NA|829aa|down_3|NC_009523.1_5021110_5023597_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|185aa|down_4|NC_009523.1_5023644_5024199_-	pfam02674, Colicin_V, Colicin V production protein	NA|294aa|down_5|NC_009523.1_5024517_5025399_-	pfam02517, Abi, CAAX protease self-immunity	NA|191aa|down_6|NC_009523.1_5025373_5025946_-	PRK06474, PRK06474, hypothetical protein; Provisional	NA|765aa|down_7|NC_009523.1_5026108_5028403_+	cd02767, MopB_ydeP, The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site	NA|289aa|down_8|NC_009523.1_5028455_5029322_+	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|442aa|down_9|NC_009523.1_5029576_5030902_+	pfam04434, SWIM, SWIM zinc finger
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	92	5096014-5096105	88	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GGATTATTTCTTCAAAGACCATAA	24	1	30	5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081|5096038-5096081	NC_009523.1_3496257-3496300|NC_009523.1_197733-197776|NC_009523.1_197889-197932|NC_009523.1_2623675-2623718|NC_009523.1_3484767-3484810|NC_009523.1_4327516-4327559|NC_009523.1_4483966-4484009|NC_009523.1_5095970-5096013|NC_009523.1_1829482-1829439|NC_009523.1_2884906-2884863|NC_009523.1_17562-17605|NC_009523.1_17630-17673|NC_009523.1_17821-17864|NC_009523.1_630201-630244|NC_009523.1_748468-748511|NC_009523.1_839786-839829|NC_009523.1_1898749-1898792|NC_009523.1_2622529-2622572|NC_009523.1_3004083-3004126|NC_009523.1_3645776-3645819|NC_009523.1_5637421-5637464|NC_009523.1_232706-232663|NC_009523.1_233198-233155|NC_009523.1_1132376-1132333|NC_009523.1_2543566-2543523|NC_009523.1_3064524-3064481|NC_009523.1_3334479-3334436|NC_009523.1_3398023-3397980|NC_009523.1_4699936-4699893|NC_009523.1_4961848-4961805	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|64aa|up_7|NC_009523.1_5087133_5087325_+,NA|205aa|up_0|NC_009523.1_5095065_5095680_-,NA|153aa|down_2|NC_009523.1_5099098_5099557_-	NA|408aa|up_9|NC_009523.1_5083222_5084446_+	pfam01960, ArgJ, ArgJ family	NA|711aa|up_8|NC_009523.1_5084762_5086895_+	pfam09586, YfhO, Bacterial membrane protein YfhO	NA|64aa|up_7|NC_009523.1_5087133_5087325_+	NA	NA|121aa|up_6|NC_009523.1_5087361_5087724_+	pfam09862, DUF2089, Protein of unknown function (DUF2089)	NA|122aa|up_5|NC_009523.1_5087734_5088100_+	pfam09862, DUF2089, Protein of unknown function (DUF2089)	NA|715aa|up_4|NC_009523.1_5088112_5090257_+	smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth	NA|615aa|up_3|NC_009523.1_5091194_5093039_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|315aa|up_2|NC_009523.1_5093064_5094009_+	pfam00762, Ferrochelatase, Ferrochelatase	NA|230aa|up_1|NC_009523.1_5094374_5095064_+	pfam01555, N6_N4_Mtase, DNA methylase	NA|205aa|up_0|NC_009523.1_5095065_5095680_-	NA	NA|622aa|down_0|NC_009523.1_5096268_5098134_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|254aa|down_1|NC_009523.1_5098264_5099026_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|153aa|down_2|NC_009523.1_5099098_5099557_-	NA	NA|826aa|down_3|NC_009523.1_5100604_5103082_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|246aa|down_4|NC_009523.1_5103599_5104337_+	cd06662, SURF1, SURF1 superfamily	NA|271aa|down_5|NC_009523.1_5104412_5105225_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|325aa|down_6|NC_009523.1_5105306_5106281_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|757aa|down_7|NC_009523.1_5106692_5108963_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|745aa|down_8|NC_009523.1_5109216_5111451_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|307aa|down_9|NC_009523.1_5111459_5112380_-	cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	93	5100215-5100317	89	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	CGGATTTATTTATTCAAAGACCATAAGCCCTCGGC	35	1	84	5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282|5100250-5100282	NC_009523.1_315070-315102|NC_009523.1_814488-814456|NC_009523.1_839795-839827|NC_009523.1_1498827-1498795|NC_009523.1_1721787-1721819|NC_009523.1_1731641-1731673|NC_009523.1_1827509-1827477|NC_009523.1_2036576-2036544|NC_009523.1_3652896-3652864|NC_009523.1_3687161-3687129|NC_009523.1_4699927-4699895|NC_009523.1_4961839-4961807|NC_009523.1_5052454-5052486|NC_009523.1_5100181-5100213|NC_009523.1_5327865-5327897|NC_009523.1_5328001-5328033|NC_009523.1_5361006-5360974|NC_009523.1_782288-782320|NC_009523.1_814556-814524|NC_009523.1_983023-983055|NC_009523.1_1462365-1462397|NC_009523.1_1467515-1467547|NC_009523.1_1498759-1498727|NC_009523.1_1525966-1525934|NC_009523.1_2403913-2403881|NC_009523.1_2519716-2519684|NC_009523.1_3386464-3386496|NC_009523.1_4126028-4126060|NC_009523.1_4126096-4126128|NC_009523.1_4452716-4452748|NC_009523.1_4463065-4463033|NC_009523.1_4483975-4484007|NC_009523.1_4773020-4772988|NC_009523.1_5103462-5103430|NC_009523.1_5327933-5327965|NC_009523.1_149605-149573|NC_009523.1_205555-205587|NC_009523.1_262397-262429|NC_009523.1_262465-262497|NC_009523.1_262533-262565|NC_009523.1_268519-268551|NC_009523.1_268587-268619|NC_009523.1_315138-315170|NC_009523.1_335542-335574|NC_009523.1_335852-335884|NC_009523.1_811275-811243|NC_009523.1_916992-916960|NC_009523.1_988157-988125|NC_009523.1_1257935-1257903|NC_009523.1_1574531-1574499|NC_009523.1_1787737-1787769|NC_009523.1_1857549-1857581|NC_009523.1_2327070-2327102|NC_009523.1_2351797-2351829|NC_009523.1_2543557-2543525|NC_009523.1_2825447-2825415|NC_009523.1_3148884-3148852|NC_009523.1_3282609-3282641|NC_009523.1_3421777-3421809|NC_009523.1_3484708-3484740|NC_009523.1_3652964-3652932|NC_009523.1_3851173-3851141|NC_009523.1_3851244-3851276|NC_009523.1_3927267-3927235|NC_009523.1_4141376-4141408|NC_009523.1_4182482-4182450|NC_009523.1_4331737-4331705|NC_009523.1_4366063-4366095|NC_009523.1_4429206-4429238|NC_009523.1_4462997-4462965|NC_009523.1_4543408-4543440|NC_009523.1_4587775-4587807|NC_009523.1_4684332-4684364|NC_009523.1_4699995-4699963|NC_009523.1_4706687-4706719|NC_009523.1_4846815-4846783|NC_009523.1_4978360-4978328|NC_009523.1_5230745-5230713|NC_009523.1_5321592-5321624|NC_009523.1_5469839-5469807|NC_009523.1_5586052-5586020|NC_009523.1_5586120-5586088|NC_009523.1_5645089-5645121|NC_009523.1_5754458-5754490	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|205aa|up_3|NC_009523.1_5095065_5095680_-,NA|153aa|up_0|NC_009523.1_5099098_5099557_-,NA	NA|121aa|up_9|NC_009523.1_5087361_5087724_+	pfam09862, DUF2089, Protein of unknown function (DUF2089)	NA|122aa|up_8|NC_009523.1_5087734_5088100_+	pfam09862, DUF2089, Protein of unknown function (DUF2089)	NA|715aa|up_7|NC_009523.1_5088112_5090257_+	smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth	NA|615aa|up_6|NC_009523.1_5091194_5093039_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|315aa|up_5|NC_009523.1_5093064_5094009_+	pfam00762, Ferrochelatase, Ferrochelatase	NA|230aa|up_4|NC_009523.1_5094374_5095064_+	pfam01555, N6_N4_Mtase, DNA methylase	NA|205aa|up_3|NC_009523.1_5095065_5095680_-	NA	NA|622aa|up_2|NC_009523.1_5096268_5098134_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|254aa|up_1|NC_009523.1_5098264_5099026_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|153aa|up_0|NC_009523.1_5099098_5099557_-	NA	NA|826aa|down_0|NC_009523.1_5100604_5103082_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|246aa|down_1|NC_009523.1_5103599_5104337_+	cd06662, SURF1, SURF1 superfamily	NA|271aa|down_2|NC_009523.1_5104412_5105225_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|325aa|down_3|NC_009523.1_5105306_5106281_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|757aa|down_4|NC_009523.1_5106692_5108963_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|745aa|down_5|NC_009523.1_5109216_5111451_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|307aa|down_6|NC_009523.1_5111459_5112380_-	cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs	NA|239aa|down_7|NC_009523.1_5112379_5113096_-	cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family	NA|329aa|down_8|NC_009523.1_5113098_5114085_-	TIGR04180, NAD-dependent_epimerase/dehydratase, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family	NA|348aa|down_9|NC_009523.1_5114136_5115180_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	94	5103361-5103454	90	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GTATAGCCCGCGCAGGCGGGCTTCGC	26	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|205aa|up_4|NC_009523.1_5095065_5095680_-,NA|153aa|up_1|NC_009523.1_5099098_5099557_-,NA	NA|122aa|up_9|NC_009523.1_5087734_5088100_+	pfam09862, DUF2089, Protein of unknown function (DUF2089)	NA|715aa|up_8|NC_009523.1_5088112_5090257_+	smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth	NA|615aa|up_7|NC_009523.1_5091194_5093039_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|315aa|up_6|NC_009523.1_5093064_5094009_+	pfam00762, Ferrochelatase, Ferrochelatase	NA|230aa|up_5|NC_009523.1_5094374_5095064_+	pfam01555, N6_N4_Mtase, DNA methylase	NA|205aa|up_4|NC_009523.1_5095065_5095680_-	NA	NA|622aa|up_3|NC_009523.1_5096268_5098134_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|254aa|up_2|NC_009523.1_5098264_5099026_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|153aa|up_1|NC_009523.1_5099098_5099557_-	NA	NA|826aa|up_0|NC_009523.1_5100604_5103082_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|246aa|down_0|NC_009523.1_5103599_5104337_+	cd06662, SURF1, SURF1 superfamily	NA|271aa|down_1|NC_009523.1_5104412_5105225_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|325aa|down_2|NC_009523.1_5105306_5106281_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|757aa|down_3|NC_009523.1_5106692_5108963_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|745aa|down_4|NC_009523.1_5109216_5111451_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|307aa|down_5|NC_009523.1_5111459_5112380_-	cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs	NA|239aa|down_6|NC_009523.1_5112379_5113096_-	cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family	NA|329aa|down_7|NC_009523.1_5113098_5114085_-	TIGR04180, NAD-dependent_epimerase/dehydratase, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family	NA|348aa|down_8|NC_009523.1_5114136_5115180_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|275aa|down_9|NC_009523.1_5115190_5116015_-	pfam13489, Methyltransf_23, Methyltransferase domain
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	95	5132665-5132756	91	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	TAGCCGAGGGCTTATGGTCTTTGA	24	1	1	5132689-5132732	NC_009523.1_3647338-3647295	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|820aa|up_9|NC_009523.1_5117006_5119466_-,NA|160aa|down_0|NC_009523.1_5133016_5133496_-,NA|46aa|down_3|NC_009523.1_5135552_5135690_-	NA|820aa|up_9|NC_009523.1_5117006_5119466_-	NA	NA|353aa|up_8|NC_009523.1_5119548_5120606_+	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease	NA|622aa|up_7|NC_009523.1_5120770_5122636_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|258aa|up_6|NC_009523.1_5122660_5123434_-	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|250aa|up_5|NC_009523.1_5123449_5124199_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|350aa|up_4|NC_009523.1_5124237_5125287_-	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|1033aa|up_3|NC_009523.1_5125244_5128343_-	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|884aa|up_2|NC_009523.1_5128347_5130999_-	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|143aa|up_1|NC_009523.1_5131609_5132038_-	pfam05168, HEPN, HEPN domain	NA|203aa|up_0|NC_009523.1_5132027_5132636_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|160aa|down_0|NC_009523.1_5133016_5133496_-	NA	NA|145aa|down_1|NC_009523.1_5133434_5133869_-	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|469aa|down_2|NC_009523.1_5133958_5135365_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|46aa|down_3|NC_009523.1_5135552_5135690_-	NA	NA|353aa|down_4|NC_009523.1_5135874_5136932_+	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease	NA|284aa|down_5|NC_009523.1_5137048_5137900_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|194aa|down_6|NC_009523.1_5138238_5138820_-	cd00438, cupin_RmlC, RmlC carbohydrate epimerase, involved in dTDP-L-rhamnose production	NA|136aa|down_7|NC_009523.1_5138890_5139298_-	pfam01934, DUF86, Protein of unknown function DUF86	NA|113aa|down_8|NC_009523.1_5139287_5139626_-	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|326aa|down_9|NC_009523.1_5139871_5140849_-	cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	96	5199226-5199318	92	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GCCTGTGGTCGTGGAGTCGGTGTC	24	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|82aa|up_7|NC_009523.1_5191277_5191523_-,NA|189aa|up_5|NC_009523.1_5192958_5193525_+,NA|113aa|down_6|NC_009523.1_5208137_5208476_+	NA|195aa|up_9|NC_009523.1_5188980_5189565_+	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III	NA|415aa|up_8|NC_009523.1_5189722_5190967_+	pfam11992, DUF3488, Domain of unknown function (DUF3488)	NA|82aa|up_7|NC_009523.1_5191277_5191523_-	NA	NA|380aa|up_6|NC_009523.1_5191760_5192900_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|189aa|up_5|NC_009523.1_5192958_5193525_+	NA	NA|287aa|up_4|NC_009523.1_5194342_5195203_-	COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|268aa|up_3|NC_009523.1_5195223_5196027_-	COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|278aa|up_2|NC_009523.1_5196066_5196900_-	TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA	NA|332aa|up_1|NC_009523.1_5197085_5198081_-	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]	NA|332aa|up_0|NC_009523.1_5198177_5199173_-	TIGR00975, precursor_PBP-3_PstS-3_Antigen_Ag88	NA|215aa|down_0|NC_009523.1_5200108_5200753_-	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|273aa|down_1|NC_009523.1_5200804_5201623_-	COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|425aa|down_2|NC_009523.1_5201622_5202897_-	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]	NA|320aa|down_3|NC_009523.1_5202893_5203853_-	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]	NA|667aa|down_4|NC_009523.1_5204060_5206061_-	cd13654, PBP2_phosphate_like_2, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|557aa|down_5|NC_009523.1_5206370_5208041_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|113aa|down_6|NC_009523.1_5208137_5208476_+	NA	NA|517aa|down_7|NC_009523.1_5208596_5210147_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|272aa|down_8|NC_009523.1_5210115_5210931_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|314aa|down_9|NC_009523.1_5210976_5211918_+	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	97	5222778-5222881	93	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GCTCCTTATCTCCGCGTCTCCGCGTGAGCCGGTTC	35	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|183aa|up_1|NC_009523.1_5221350_5221899_+,NA|96aa|down_6|NC_009523.1_5230711_5230999_-,NA|163aa|down_8|NC_009523.1_5232556_5233045_+	NA|272aa|up_9|NC_009523.1_5210115_5210931_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|314aa|up_8|NC_009523.1_5210976_5211918_+	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	NA|490aa|up_7|NC_009523.1_5212421_5213891_+	cd09618, CBM9_like_2, DOMON-like type 9 carbohydrate binding module	NA|429aa|up_6|NC_009523.1_5214020_5215307_-	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|524aa|up_5|NC_009523.1_5215328_5216900_-	PRK09255, PRK09255, malate synthase; Validated	NA|408aa|up_4|NC_009523.1_5217210_5218434_+	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|649aa|up_3|NC_009523.1_5218430_5220377_+	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|327aa|up_2|NC_009523.1_5220373_5221354_+	sd00006, TPR, Tetratricopeptide repeat	NA|183aa|up_1|NC_009523.1_5221350_5221899_+	NA	NA|239aa|up_0|NC_009523.1_5221895_5222612_+	cd00004, Sortase, Sortase domain	NA|217aa|down_0|NC_009523.1_5223105_5223756_+	pfam12724, Flavodoxin_5, Flavodoxin domain	NA|354aa|down_1|NC_009523.1_5223887_5224949_-	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes	NA|348aa|down_2|NC_009523.1_5224964_5226008_-	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|409aa|down_3|NC_009523.1_5226017_5227244_-	TIGR04253, mesacon_CoA_iso, mesaconyl-CoA isomerase	NA|407aa|down_4|NC_009523.1_5227578_5228799_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|455aa|down_5|NC_009523.1_5228835_5230200_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|96aa|down_6|NC_009523.1_5230711_5230999_-	NA	NA|283aa|down_7|NC_009523.1_5231358_5232207_+	COG3777, COG3777, Uncharacterized conserved protein [Function unknown]	NA|163aa|down_8|NC_009523.1_5232556_5233045_+	NA	NA|516aa|down_9|NC_009523.1_5233404_5234952_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	98	5230791-5231009	11	CRT	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	TNCTCAATCTCCATCAGCCCNACGGCA	27	2	15	5230818-5230838|5230818-5230838|5230818-5230838|5230818-5230838|5230818-5230838|5230818-5230838|5230818-5230838|5230818-5230838|5230818-5230838|5230818-5230838|5230818-5230838|5230818-5230838|5230818-5230838|5230866-5230886|5230866-5230886	NC_009523.1_1483781-1483761|NC_009523.1_3676836-3676816|NC_009523.1_473330-473310|NC_009523.1_475118-475098|NC_009523.1_1764475-1764455|NC_009523.1_4768447-4768427|NC_009523.1_4768654-4768634|NC_009523.1_487843-487823|NC_009523.1_560924-560904|NC_009523.1_1467442-1467422|NC_009523.1_2884969-2884989|NC_009523.1_4429773-4429753|NC_009523.1_4573930-4573950|NC_009523.1_2229566-2229546|NC_009523.1_3173652-3173632	NA	4	4	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|183aa|up_7|NC_009523.1_5221350_5221899_+,NA|163aa|down_1|NC_009523.1_5232556_5233045_+,NA|274aa|down_3|NC_009523.1_5234985_5235807_+	NA|649aa|up_9|NC_009523.1_5218430_5220377_+	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|327aa|up_8|NC_009523.1_5220373_5221354_+	sd00006, TPR, Tetratricopeptide repeat	NA|183aa|up_7|NC_009523.1_5221350_5221899_+	NA	NA|239aa|up_6|NC_009523.1_5221895_5222612_+	cd00004, Sortase, Sortase domain	NA|217aa|up_5|NC_009523.1_5223105_5223756_+	pfam12724, Flavodoxin_5, Flavodoxin domain	NA|354aa|up_4|NC_009523.1_5223887_5224949_-	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes	NA|348aa|up_3|NC_009523.1_5224964_5226008_-	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|409aa|up_2|NC_009523.1_5226017_5227244_-	TIGR04253, mesacon_CoA_iso, mesaconyl-CoA isomerase	NA|407aa|up_1|NC_009523.1_5227578_5228799_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|455aa|up_0|NC_009523.1_5228835_5230200_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|283aa|down_0|NC_009523.1_5231358_5232207_+	COG3777, COG3777, Uncharacterized conserved protein [Function unknown]	NA|163aa|down_1|NC_009523.1_5232556_5233045_+	NA	NA|516aa|down_2|NC_009523.1_5233404_5234952_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|274aa|down_3|NC_009523.1_5234985_5235807_+	NA	NA|720aa|down_4|NC_009523.1_5236064_5238224_+	cd04299, GT35_Glycogen_Phosphorylase-like, proteins similar to glycogen phosphorylase	NA|221aa|down_5|NC_009523.1_5238333_5238996_-	TIGR02977, phage_shock_protein_A, phage shock protein A	NA|272aa|down_6|NC_009523.1_5239207_5240023_+	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain	NA|315aa|down_7|NC_009523.1_5240233_5241178_+	pfam01555, N6_N4_Mtase, DNA methylase	NA|237aa|down_8|NC_009523.1_5241180_5241891_+	pfam11487, RestrictionSfiI, Type II restriction enzyme SfiI	NA|712aa|down_9|NC_009523.1_5242039_5244175_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	99	5244201-5244548	12	CRT	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	TGNNNCGTTGAANGTTGGGACGTTGANCGTTGAA	34	3	37	5244235-5244258|5244235-5244258|5244235-5244258|5244235-5244258|5244235-5244258|5244235-5244258|5244235-5244258|5244235-5244258|5244235-5244258|5244293-5244323|5244293-5244323|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514|5244497-5244514	NC_009523.1_1724605-1724582|NC_009523.1_1724627-1724604|NC_009523.1_1724649-1724626|NC_009523.1_1724738-1724715|NC_009523.1_1724798-1724775|NC_009523.1_1900721-1900698|NC_009523.1_5550593-5550570|NC_009523.1_5550645-5550622|NC_009523.1_5550734-5550711|NC_009523.1_4352086-4352116|NC_009523.1_5571196-5571166|NC_009523.1_1893952-1893969|NC_009523.1_1894024-1894041|NC_009523.1_1894092-1894109|NC_009523.1_3765546-3765563|NC_009523.1_3765588-3765605|NC_009523.1_4036583-4036600|NC_009523.1_1356228-1356211|NC_009523.1_1586067-1586050|NC_009523.1_1724606-1724589|NC_009523.1_1724628-1724611|NC_009523.1_1724650-1724633|NC_009523.1_1724739-1724722|NC_009523.1_1724799-1724782|NC_009523.1_2368471-2368454|NC_009523.1_2536181-2536198|NC_009523.1_3101083-3101100|NC_009523.1_4655901-4655884|NC_009523.1_4656081-4656064|NC_009523.1_4756326-4756309|NC_009523.1_4806587-4806604|NC_009523.1_4922106-4922123|NC_009523.1_5265473-5265490|NC_009523.1_5267269-5267286|NC_009523.1_5550594-5550577|NC_009523.1_5550646-5550629|NC_009523.1_5550735-5550718	NA	5	5	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|163aa|up_8|NC_009523.1_5232556_5233045_+,NA|274aa|up_6|NC_009523.1_5234985_5235807_+,NA|239aa|down_8|NC_009523.1_5254795_5255512_-,NA|87aa|down_9|NC_009523.1_5255782_5256043_-	NA|283aa|up_9|NC_009523.1_5231358_5232207_+	COG3777, COG3777, Uncharacterized conserved protein [Function unknown]	NA|163aa|up_8|NC_009523.1_5232556_5233045_+	NA	NA|516aa|up_7|NC_009523.1_5233404_5234952_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|274aa|up_6|NC_009523.1_5234985_5235807_+	NA	NA|720aa|up_5|NC_009523.1_5236064_5238224_+	cd04299, GT35_Glycogen_Phosphorylase-like, proteins similar to glycogen phosphorylase	NA|221aa|up_4|NC_009523.1_5238333_5238996_-	TIGR02977, phage_shock_protein_A, phage shock protein A	NA|272aa|up_3|NC_009523.1_5239207_5240023_+	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain	NA|315aa|up_2|NC_009523.1_5240233_5241178_+	pfam01555, N6_N4_Mtase, DNA methylase	NA|237aa|up_1|NC_009523.1_5241180_5241891_+	pfam11487, RestrictionSfiI, Type II restriction enzyme SfiI	NA|712aa|up_0|NC_009523.1_5242039_5244175_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|332aa|down_0|NC_009523.1_5244611_5245607_+	pfam03320, FBPase_glpX, Bacterial fructose-1,6-bisphosphatase, glpX-encoded	NA|427aa|down_1|NC_009523.1_5247275_5248556_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|184aa|down_2|NC_009523.1_5248524_5249076_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|549aa|down_3|NC_009523.1_5249087_5250734_+	PRK13169, PRK13169, DNA replication initiation control protein YabA	NA|190aa|down_4|NC_009523.1_5250577_5251147_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|279aa|down_5|NC_009523.1_5251385_5252222_+	pfam13369, Transglut_core2, Transglutaminase-like superfamily	NA|488aa|down_6|NC_009523.1_5252243_5253707_-	cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like	NA|182aa|down_7|NC_009523.1_5253895_5254441_-	cd02908, Macro_OAADPr_deacetylase, macrodomain, O-acetyl-ADP-ribose (OAADPr) family	NA|239aa|down_8|NC_009523.1_5254795_5255512_-	NA	NA|87aa|down_9|NC_009523.1_5255782_5256043_-	NA
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	100	5261311-5261381	94	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	AAACGCTCAATCTTCATGAGCCC	23	1	1	5261334-5261358	NC_009523.1_3654599-3654623	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|239aa|up_4|NC_009523.1_5254795_5255512_-,NA|87aa|up_3|NC_009523.1_5255782_5256043_-,NA|217aa|up_1|NC_009523.1_5258719_5259370_+,NA	NA|549aa|up_9|NC_009523.1_5249087_5250734_+	PRK13169, PRK13169, DNA replication initiation control protein YabA	NA|190aa|up_8|NC_009523.1_5250577_5251147_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|279aa|up_7|NC_009523.1_5251385_5252222_+	pfam13369, Transglut_core2, Transglutaminase-like superfamily	NA|488aa|up_6|NC_009523.1_5252243_5253707_-	cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like	NA|182aa|up_5|NC_009523.1_5253895_5254441_-	cd02908, Macro_OAADPr_deacetylase, macrodomain, O-acetyl-ADP-ribose (OAADPr) family	NA|239aa|up_4|NC_009523.1_5254795_5255512_-	NA	NA|87aa|up_3|NC_009523.1_5255782_5256043_-	NA	NA|750aa|up_2|NC_009523.1_5256044_5258294_-	pfam13485, Peptidase_MA_2, Peptidase MA superfamily	NA|217aa|up_1|NC_009523.1_5258719_5259370_+	NA	NA|563aa|up_0|NC_009523.1_5259454_5261143_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|200aa|down_0|NC_009523.1_5261482_5262082_-	pfam10069, DICT, Sensory domain in DIguanylate Cyclases and Two-component system	NA|185aa|down_1|NC_009523.1_5262356_5262911_+	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|146aa|down_2|NC_009523.1_5262920_5263358_-	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|306aa|down_3|NC_009523.1_5263382_5264300_-	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region	NA|347aa|down_4|NC_009523.1_5264320_5265361_-	COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]	NA|205aa|down_5|NC_009523.1_5265601_5266216_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|314aa|down_6|NC_009523.1_5266229_5267171_+	pfam13098, Thioredoxin_2, Thioredoxin-like domain	NA|299aa|down_7|NC_009523.1_5267167_5268064_-	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|334aa|down_8|NC_009523.1_5268184_5269186_+	pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family	NA|689aa|down_9|NC_009523.1_5269196_5271263_+	pfam09594, GT87, Glycosyltransferase family 87
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	101	5327565-5327664	95	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GGGGATGAGGGGCAAAGGCGCCC	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|46aa|up_9|NC_009523.1_5311604_5311742_-,NA|46aa|up_8|NC_009523.1_5311864_5312002_-,NA|46aa|up_7|NC_009523.1_5312124_5312262_-,NA|88aa|up_6|NC_009523.1_5312471_5312735_-,NA|556aa|up_5|NC_009523.1_5313004_5314672_+,NA|131aa|down_0|NC_009523.1_5328069_5328462_+,NA|412aa|down_1|NC_009523.1_5328419_5329655_-	NA|46aa|up_9|NC_009523.1_5311604_5311742_-	NA	NA|46aa|up_8|NC_009523.1_5311864_5312002_-	NA	NA|46aa|up_7|NC_009523.1_5312124_5312262_-	NA	NA|88aa|up_6|NC_009523.1_5312471_5312735_-	NA	NA|556aa|up_5|NC_009523.1_5313004_5314672_+	NA	NA|520aa|up_4|NC_009523.1_5316309_5317869_+	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|285aa|up_3|NC_009523.1_5317957_5318812_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|714aa|up_2|NC_009523.1_5319222_5321364_+	pfam13360, PQQ_2, PQQ-like domain	NA|1333aa|up_1|NC_009523.1_5322075_5326074_+	cd08984, GH43-like, Glycosyl hydrolase family 43	NA|369aa|up_0|NC_009523.1_5326314_5327421_+	pfam04471, Mrr_cat, Restriction endonuclease	NA|131aa|down_0|NC_009523.1_5328069_5328462_+	NA	NA|412aa|down_1|NC_009523.1_5328419_5329655_-	NA	NA|409aa|down_2|NC_009523.1_5329936_5331163_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|462aa|down_3|NC_009523.1_5331358_5332744_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|315aa|down_4|NC_009523.1_5332868_5333813_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|287aa|down_5|NC_009523.1_5333826_5334687_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|247aa|down_6|NC_009523.1_5334700_5335441_+	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|215aa|down_7|NC_009523.1_5335452_5336097_+	cd09620, CBM9_like_3, DOMON-like type 9 carbohydrate binding module	NA|261aa|down_8|NC_009523.1_5336116_5336899_+	cd05233, SDR_c, classical (c) SDRs	NA|396aa|down_9|NC_009523.1_5336929_5338117_-	PRK09237, PRK09237, amidohydrolase/deacetylase family metallohydrolase
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	102	5409680-5409788	96	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GGAGAAGGGGGAGTTTAGGCATCCTGATGCCTGAAAC	37	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|132aa|up_8|NC_009523.1_5394156_5394552_-,NA|72aa|up_7|NC_009523.1_5394666_5394882_-,NA|68aa|down_0|NC_009523.1_5410375_5410579_-,NA|148aa|down_5|NC_009523.1_5414895_5415339_-,NA|165aa|down_7|NC_009523.1_5416640_5417135_+	NA|872aa|up_9|NC_009523.1_5390744_5393360_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|132aa|up_8|NC_009523.1_5394156_5394552_-	NA	NA|72aa|up_7|NC_009523.1_5394666_5394882_-	NA	NA|187aa|up_6|NC_009523.1_5395995_5396556_-	pfam01872, RibD_C, RibD C-terminal domain	NA|856aa|up_5|NC_009523.1_5397059_5399627_+	TIGR03663, TIGR03663, TIGR03663 family protein	NA|628aa|up_4|NC_009523.1_5399693_5401577_-	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|478aa|up_3|NC_009523.1_5401789_5403223_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1178aa|up_2|NC_009523.1_5403314_5406848_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|203aa|up_1|NC_009523.1_5407086_5407695_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|414aa|up_0|NC_009523.1_5408016_5409258_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|68aa|down_0|NC_009523.1_5410375_5410579_-	NA	NA|126aa|down_1|NC_009523.1_5410946_5411324_+	pfam13565, HTH_32, Homeodomain-like domain	NA|452aa|down_2|NC_009523.1_5411386_5412742_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|90aa|down_3|NC_009523.1_5412763_5413033_+	pfam11213, DUF3006, Protein of unknown function (DUF3006)	NA|559aa|down_4|NC_009523.1_5413178_5414855_-	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product	NA|148aa|down_5|NC_009523.1_5414895_5415339_-	NA	NA|306aa|down_6|NC_009523.1_5415726_5416644_+	COG1313, PflX, Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]	NA|165aa|down_7|NC_009523.1_5416640_5417135_+	NA	NA|351aa|down_8|NC_009523.1_5417206_5418259_-	cd00321, SO_family_Moco, Sulfite oxidase (SO) family, molybdopterin binding domain	NA|212aa|down_9|NC_009523.1_5418378_5419014_-	PRK00081, coaE, dephospho-CoA kinase; Reviewed
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	103	5434247-5441685	11,97,13,12	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	 Type I-U?,Type I-U,Type I-C	GTTTCAATCCACGCCTTCCGGGGGGAAGGCGAC,GTTTCAATCCACGCCTTCCGGGGGGAAGGCGAC,GTTTCAATCCACGCCTTCCGGGGGGAAGGCGAC,GTTTCAATCCACGCCTTCCGGGGGGAAGGCGAC	33,33,33,33	0	0	NA	NA	NA:NA:NA:NA	95,110,110,95	110	TypeI-U?,TypeI-U,TypeI-C	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|188aa|up_9|NC_009523.1_5421693_5422257_-,NA|111aa|up_8|NC_009523.1_5422277_5422610_-,NA|289aa|up_0|NC_009523.1_5433169_5434036_+,NA|244aa|down_9|NC_009523.1_5452797_5453529_+	NA|188aa|up_9|NC_009523.1_5421693_5422257_-	NA	NA|111aa|up_8|NC_009523.1_5422277_5422610_-	NA	NA|357aa|up_7|NC_009523.1_5422665_5423736_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|157aa|up_6|NC_009523.1_5423732_5424203_-	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|232aa|up_5|NC_009523.1_5424432_5425128_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|621aa|up_4|NC_009523.1_5425246_5427109_+	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|692aa|up_3|NC_009523.1_5427108_5429184_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|188aa|up_2|NC_009523.1_5429134_5429698_-	pfam04264, YceI, YceI-like domain	NA|1030aa|up_1|NC_009523.1_5429764_5432854_-	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|289aa|up_0|NC_009523.1_5433169_5434036_+	NA	cas2|97aa|down_0|NC_009523.1_5441847_5442138_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|NC_009523.1_5442372_5443404_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|223aa|down_2|NC_009523.1_5443522_5444191_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas7|325aa|down_3|NC_009523.1_5444462_5445437_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|647aa|down_4|NC_009523.1_5445472_5447413_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|243aa|down_5|NC_009523.1_5447414_5448143_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|833aa|down_6|NC_009523.1_5448154_5450653_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|228aa|down_7|NC_009523.1_5451770_5452454_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|81aa|down_8|NC_009523.1_5452362_5452605_-	pfam10047, DUF2281, Protein of unknown function (DUF2281)	NA|244aa|down_9|NC_009523.1_5452797_5453529_+	NA
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	104	5495144-5495241	98	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GCTCATGGTCTTTGAATACTTAATCCGCTC	30	1	27	5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211|5495174-5495211	NC_009523.1_262563-262526|NC_009523.1_262495-262458|NC_009523.1_630240-630203|NC_009523.1_782318-782281|NC_009523.1_1462395-1462358|NC_009523.1_1462463-1462426|NC_009523.1_1467545-1467508|NC_009523.1_1634566-1634529|NC_009523.1_2351827-2351790|NC_009523.1_3004122-3004085|NC_009523.1_3386494-3386457|NC_009523.1_3639467-3639430|NC_009523.1_4141406-4141369|NC_009523.1_723911-723948|NC_009523.1_1341226-1341263|NC_009523.1_1341284-1341321|NC_009523.1_1342151-1342188|NC_009523.1_1342564-1342601|NC_009523.1_1498729-1498766|NC_009523.1_1951134-1951171|NC_009523.1_2403883-2403920|NC_009523.1_3654503-3654540|NC_009523.1_3851143-3851180|NC_009523.1_3868016-3868053|NC_009523.1_4331707-4331744|NC_009523.1_4699829-4699866|NC_009523.1_4772990-4773027	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|77aa|up_9|NC_009523.1_5486298_5486529_-,NA|184aa|up_3|NC_009523.1_5491697_5492249_-,NA|236aa|up_2|NC_009523.1_5492582_5493290_-,NA	NA|77aa|up_9|NC_009523.1_5486298_5486529_-	NA	NA|48aa|up_8|NC_009523.1_5487121_5487265_-	cd12870, MqsA, antitoxin MqsA for MqsR toxin	NA|89aa|up_7|NC_009523.1_5487437_5487704_-	pfam14384, BrnA_antitoxin, BrnA antitoxin of type II toxin-antitoxin system	NA|76aa|up_6|NC_009523.1_5487939_5488167_-	COG2442, COG2442, Uncharacterized conserved protein [Function unknown]	NA|423aa|up_5|NC_009523.1_5489919_5491188_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|163aa|up_4|NC_009523.1_5491108_5491597_-	pfam08734, GYD, GYD domain	NA|184aa|up_3|NC_009523.1_5491697_5492249_-	NA	NA|236aa|up_2|NC_009523.1_5492582_5493290_-	NA	NA|222aa|up_1|NC_009523.1_5494007_5494673_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|96aa|up_0|NC_009523.1_5494677_5494965_+	COG0011, COG0011, Uncharacterized conserved protein [Function unknown]	NA|533aa|down_0|NC_009523.1_5495812_5497411_-	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|216aa|down_1|NC_009523.1_5497664_5498312_+	COG0456, RimI, Acetyltransferases [General function prediction only]	NA|422aa|down_2|NC_009523.1_5498366_5499632_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|134aa|down_3|NC_009523.1_5499802_5500204_+	cd17574, REC_OmpR, phosphoacceptor receiver (REC) domain of OmpR family response regulators	NA|193aa|down_4|NC_009523.1_5500207_5500786_-	pfam09335, VTT, VMP1, TMEM41, and TVP38 (VTT) domain	NA|246aa|down_5|NC_009523.1_5500808_5501546_-	pfam13490, zf-HC2, Putative zinc-finger	NA|202aa|down_6|NC_009523.1_5501598_5502204_-	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|796aa|down_7|NC_009523.1_5502293_5504681_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|491aa|down_8|NC_009523.1_5505296_5506769_+	TIGR00947, 2A73, putative bicarbonate transporter, IctB family	NA|289aa|down_9|NC_009523.1_5506956_5507823_+	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	105	5592763-5592862	99	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	GGCGCTGCCGATGATGTGGCGTTCGC	26	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|418aa|up_1|NC_009523.1_5588277_5589531_-,NA|158aa|down_5|NC_009523.1_5599437_5599911_-,NA|73aa|down_8|NC_009523.1_5601141_5601360_-,NA|103aa|down_9|NC_009523.1_5601373_5601682_-	NA|429aa|up_9|NC_009523.1_5572344_5573631_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|216aa|up_8|NC_009523.1_5573952_5574600_+	smart00989, V4R, The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons	NA|466aa|up_7|NC_009523.1_5574939_5576337_+	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase	NA|315aa|up_6|NC_009523.1_5576348_5577293_+	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains	NA|2154aa|up_5|NC_009523.1_5577356_5583818_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|280aa|up_4|NC_009523.1_5583814_5584654_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|346aa|up_3|NC_009523.1_5584653_5585691_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|321aa|up_2|NC_009523.1_5586352_5587315_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|418aa|up_1|NC_009523.1_5588277_5589531_-	NA	NA|731aa|up_0|NC_009523.1_5590396_5592589_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|248aa|down_0|NC_009523.1_5593257_5594001_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|471aa|down_1|NC_009523.1_5594034_5595447_+	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]	NA|812aa|down_2|NC_009523.1_5595450_5597886_+	cd10797, GH57N_APU_like_1, N-terminal putative catalytic domain of mainly uncharacterized prokaryotic proteins similar to archaeal thermoactive amylopullulanases; glycoside hydrolase family 57 (GH57)	NA|202aa|down_3|NC_009523.1_5597996_5598602_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|268aa|down_4|NC_009523.1_5598614_5599418_-	pfam14256, YwiC, YwiC-like protein	NA|158aa|down_5|NC_009523.1_5599437_5599911_-	NA	NA|107aa|down_6|NC_009523.1_5599963_5600284_-	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain	NA|270aa|down_7|NC_009523.1_5600280_5601090_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|73aa|down_8|NC_009523.1_5601141_5601360_-	NA	NA|103aa|down_9|NC_009523.1_5601373_5601682_-	NA
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	106	5637340-5637431	100	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	TCAAAGACCATAAGCCCTCGGCTA	24	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA|93aa|up_6|NC_009523.1_5627175_5627454_-,NA|127aa|up_3|NC_009523.1_5630838_5631219_-,NA|322aa|up_2|NC_009523.1_5631243_5632209_-,NA|84aa|up_0|NC_009523.1_5635572_5635824_+,NA|385aa|down_0|NC_009523.1_5637471_5638626_-,NA|447aa|down_3|NC_009523.1_5642572_5643913_-,NA|178aa|down_4|NC_009523.1_5643992_5644526_-	NA|193aa|up_9|NC_009523.1_5623344_5623923_+	pfam09858, DUF2085, Predicted membrane protein (DUF2085)	NA|201aa|up_8|NC_009523.1_5623919_5624522_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|286aa|up_7|NC_009523.1_5624534_5625392_+	pfam09858, DUF2085, Predicted membrane protein (DUF2085)	NA|93aa|up_6|NC_009523.1_5627175_5627454_-	NA	NA|331aa|up_5|NC_009523.1_5628329_5629322_+	cd06308, PBP1_sensor_kinase-like, periplasmic binding domain of two-component sensor kinase signaling systems	NA|512aa|up_4|NC_009523.1_5629318_5630854_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|127aa|up_3|NC_009523.1_5630838_5631219_-	NA	NA|322aa|up_2|NC_009523.1_5631243_5632209_-	NA	NA|347aa|up_1|NC_009523.1_5633802_5634843_-	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|84aa|up_0|NC_009523.1_5635572_5635824_+	NA	NA|385aa|down_0|NC_009523.1_5637471_5638626_-	NA	NA|419aa|down_1|NC_009523.1_5638829_5640086_-	TIGR03593, yidC_nterm, membrane protein insertase, YidC/Oxa1 family, N-terminal domain	NA|447aa|down_2|NC_009523.1_5640403_5641744_-	COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]	NA|447aa|down_3|NC_009523.1_5642572_5643913_-	NA	NA|178aa|down_4|NC_009523.1_5643992_5644526_-	NA	NA|402aa|down_5|NC_009523.1_5645182_5646388_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|222aa|down_6|NC_009523.1_5646424_5647090_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|189aa|down_7|NC_009523.1_5647152_5647719_-	pfam07274, DUF1440, Protein of unknown function (DUF1440)	NA|193aa|down_8|NC_009523.1_5648655_5649234_-	pfam07274, DUF1440, Protein of unknown function (DUF1440)	NA|147aa|down_9|NC_009523.1_5649430_5649871_+	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like
GCF_000016665.1_ASM1666v1	NC_009523	Roseiflexus sp. RS-1, complete genome	107	5793803-5793903	101	CRISPRCasFinder	no		PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	Orphan	TACCTGCTCGCTCACAGAGCAGGCAGGTTC	30	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,c2c9_V-U4,cmr1gr7,csx1,Cas9_archaeal,csx3,cas8b2,cas4,DinG,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cmr6gr7,RT,csx15,cas8c	NA,NA	NA|675aa|up_9|NC_009523.1_5780422_5782447_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|218aa|up_8|NC_009523.1_5782490_5783144_-	PRK01362, PRK01362, fructose-6-phosphate aldolase	NA|349aa|up_7|NC_009523.1_5783521_5784568_+	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	NA|315aa|up_6|NC_009523.1_5784638_5785583_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|263aa|up_5|NC_009523.1_5785575_5786364_+	COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]	NA|246aa|up_4|NC_009523.1_5786437_5787175_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|433aa|up_3|NC_009523.1_5787192_5788491_-	cd03111, CpaE-like, pilus assembly ATPase CpaE	NA|831aa|up_2|NC_009523.1_5788753_5791246_+	pfam14312, FG-GAP_2, FG-GAP repeat	NA|342aa|up_1|NC_009523.1_5791238_5792264_-	pfam13401, AAA_22, AAA domain	NA|353aa|up_0|NC_009523.1_5792724_5793783_+	pfam13248, zf-ribbon_3, zinc-ribbon domain	NA|106aa|down_0|NC_009523.1_5794068_5794386_+	pfam03091, CutA1, CutA1 divalent ion tolerance protein	NA|383aa|down_1|NC_009523.1_5794500_5795649_+	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC	NA|593aa|down_2|NC_009523.1_5795698_5797477_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|653aa|down_3|NC_009523.1_5797623_5799582_+	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|368aa|down_4|NC_009523.1_5799649_5800753_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|185aa|down_5|NC_009523.1_5801011_5801566_+	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
