The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_009484	Acidiphilium cryptum JF-5, complete genome	3389227	865695	887985	3389227	transposase	Stx2-converting_phage(40.0%)	16	NA	NA
WP_011941767.1|865695_866919_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	46.3	4.7e-42
WP_081432875.1|867271_867607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050751093.1|867764_867947_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_007421341.1|868680_869697_-|transposase	IS1595-like element ISAcr1 family transposase	transposase	NA	NA	NA	NA
WP_050751094.1|870555_870993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155856404.1|870985_872584_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	44.2	5.4e-107
WP_011941775.1|872720_873062_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	57.3	3.3e-30
WP_155856350.1|874680_875169_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011941778.1|875243_876911_-	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_011930484.1|877364_878573_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	46.8	3.6e-95
WP_011941779.1|878934_879207_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_050751095.1|879203_881039_+	N-6 DNA methylase	NA	NA	NA	NA	NA
WP_011941781.1|881038_882118_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_081432877.1|882172_884092_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_011941783.1|884088_886008_+	ATP-dependent helicase	NA	A0A1P8CWU5	Bacillus_phage	21.4	5.9e-15
WP_011941785.1|886731_887985_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NC_009484	Acidiphilium cryptum JF-5, complete genome	3389227	2533449	2596657	3389227	transposase,integrase	Acidithiobacillus_phage(12.5%)	55	2567939:2567957	2597501:2597519
WP_011930648.1|2533449_2534997_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	47.9	5.1e-126
WP_012039952.1|2535114_2535591_-	bifunctional DNA primase/polymerase	NA	NA	NA	NA	NA
WP_043509202.1|2535590_2535854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043509204.1|2535993_2536182_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012039954.1|2536283_2536931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043509206.1|2536927_2537131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012039955.1|2537127_2537379_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012039956.1|2537375_2537780_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043509207.1|2537776_2537971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155856380.1|2538066_2539320_-	DUF4102 domain-containing protein	NA	A0A077KET4	Ralstonia_phage	47.8	6.6e-100
WP_012039958.1|2539798_2540605_+	DUF4102 domain-containing protein	NA	Q8W6M6	Sinorhizobium_phage	48.5	4.1e-63
WP_012039960.1|2541878_2542673_-	5-deoxy-glucuronate isomerase	NA	NA	NA	NA	NA
WP_012039961.1|2542704_2544543_-	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	NA	NA	NA	NA	NA
WP_012039962.1|2544539_2546450_-	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA	NA
WP_007421524.1|2546518_2547322_-	sugar ABC transporter ATP-binding protein	NA	A0A076FI99	Aureococcus_anophage	27.7	1.1e-07
WP_007421525.1|2547323_2548391_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_012039963.1|2548471_2549434_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_007421527.1|2549598_2550387_-	TIM barrel protein	NA	NA	NA	NA	NA
WP_012039964.1|2550395_2551406_-	inositol 2-dehydrogenase	NA	NA	NA	NA	NA
WP_043509209.1|2551407_2552316_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA	NA
WP_012039966.1|2552445_2553519_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_012039968.1|2554046_2554859_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_012039969.1|2554855_2555767_-	myo-inosose-2 dehydratase	NA	NA	NA	NA	NA
WP_012039970.1|2555880_2556825_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012039971.1|2557148_2557940_+	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase	NA	NA	NA	NA	NA
WP_007421625.1|2557941_2558928_+	hydroxyacid dehydrogenase	NA	A0A1B1IVB5	uncultured_Mediterranean_phage	28.7	7.9e-16
WP_012039972.1|2558998_2559991_+	inositol 2-dehydrogenase	NA	NA	NA	NA	NA
WP_007421623.1|2559995_2561117_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_012039974.1|2561465_2563892_-	DUF2309 domain-containing protein	NA	NA	NA	NA	NA
WP_012039975.1|2563911_2565471_-	oxidoreductase	NA	NA	NA	NA	NA
WP_012039976.1|2565578_2566454_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012039977.1|2566985_2567243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012039978.1|2567304_2567925_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_012039979.1|2567921_2568350_+	hypothetical protein	NA	NA	NA	NA	NA
2567939:2567957	attL	CGCCGCCCTTGCCGCCGCC	NA	NA	NA	NA
WP_012039980.1|2568346_2568886_+	periplasmic heavy metal sensor	NA	NA	NA	NA	NA
WP_043509210.1|2568974_2569163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043509211.1|2569211_2569478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155856381.1|2569491_2570871_+	DUF1800 family protein	NA	NA	NA	NA	NA
WP_012039982.1|2570876_2572094_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_011930454.1|2572945_2574199_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_155856417.1|2574424_2575387_+	FAD-binding protein	NA	NA	NA	NA	NA
WP_012039985.1|2575414_2575840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043509361.1|2576039_2577008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012039987.1|2577007_2578132_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_012039988.1|2578332_2578656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012039989.1|2578861_2579767_+|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	32.6	5.2e-30
WP_012039990.1|2579771_2580965_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_012039991.1|2581572_2582007_-	group 1 truncated hemoglobin	NA	NA	NA	NA	NA
WP_050751121.1|2582027_2583008_-	DUF3034 family protein	NA	NA	NA	NA	NA
WP_012039993.1|2583945_2585640_+	recombinase family protein	NA	R9TP69	Rhizobium_phage	36.6	3.3e-78
WP_035189036.1|2591484_2592453_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A0K0KW07	Prochlorococcus_phage	27.1	8.3e-10
WP_007422999.1|2592449_2593049_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_007422998.1|2593038_2593824_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_007422997.1|2594672_2595263_-	heme-binding protein	NA	NA	NA	NA	NA
WP_155856382.1|2595883_2596657_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
2597501:2597519	attR	GGCGGCGGCAAGGGCGGCG	NA	NA	NA	NA
>prophage 3
NC_009484	Acidiphilium cryptum JF-5, complete genome	3389227	2749998	2797600	3389227	terminase,tRNA,protease,portal,tail,plate	uncultured_virus(45.45%)	51	NA	NA
WP_007423537.1|2749998_2751234_-|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	tRNA	NA	NA	NA	NA
WP_012040099.1|2751230_2752064_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_012040100.1|2752106_2753576_-	APC family permease	NA	NA	NA	NA	NA
WP_012040101.1|2753572_2754295_-	endonuclease III	NA	NA	NA	NA	NA
WP_012040102.1|2754347_2754893_+	DUF2244 domain-containing protein	NA	NA	NA	NA	NA
WP_012040103.1|2754965_2756114_+	MFS transporter	NA	NA	NA	NA	NA
WP_007423234.1|2756209_2757859_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	61.2	2.6e-173
WP_007423235.1|2757903_2758218_-	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	58.5	1.8e-22
WP_012040104.1|2758435_2758762_+	Usg family protein	NA	NA	NA	NA	NA
WP_012040105.1|2758881_2759712_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012040106.1|2759836_2761222_+|terminase	phage terminase large subunit	terminase	A0A1X9SGU8	Bradyrhizobium_phage	39.3	2.7e-70
WP_007423133.1|2761226_2762639_+|portal	phage portal protein	portal	NA	NA	NA	NA
WP_007423132.1|2762635_2763061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012040107.1|2763160_2764483_+	DUF4043 family protein	NA	NA	NA	NA	NA
WP_007423130.1|2764496_2764805_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012040108.1|2764806_2765214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012040109.1|2765221_2765866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012040110.1|2765865_2766711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007421564.1|2766862_2768419_+|tail	tail protein	tail	B3GAJ6	uncultured_virus	46.4	3.7e-100
WP_007421565.1|2768427_2768856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007421566.1|2768852_2769158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043509231.1|2769321_2770095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012040112.1|2770111_2770798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007422926.1|2770794_2770989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012040113.1|2770960_2771962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012040114.1|2771958_2772507_+|plate	baseplate assembly protein	plate	B3GAJ7	uncultured_virus	38.7	5.4e-14
WP_012040115.1|2772506_2772875_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012040116.1|2772893_2774018_+|plate	baseplate J/gp47 family protein	plate	B3GAJ9	uncultured_virus	43.3	1.1e-50
WP_007422920.1|2774021_2774696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012040117.1|2774788_2776042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043509232.1|2776056_2776548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012040118.1|2776557_2779101_+	hypothetical protein	NA	A0A2I7S0A8	Vibrio_phage	28.8	2.7e-07
WP_012040119.1|2779128_2781021_+	collagen-like protein	NA	NA	NA	NA	NA
WP_012040120.1|2781023_2783162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007422432.1|2783167_2783521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007422431.1|2783537_2783777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012040121.1|2783764_2784160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012040122.1|2784156_2784462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012040123.1|2784431_2786615_-	RNA degradosome polyphosphate kinase	NA	NA	NA	NA	NA
WP_007422427.1|2786645_2787359_-	DNA replication protein	NA	NA	NA	NA	NA
WP_012040125.1|2787381_2788476_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_012040126.1|2788630_2789701_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3HVS1	Synechococcus_phage	39.5	3.6e-54
WP_012040127.1|2789697_2790318_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.5	1.4e-23
WP_154653547.1|2790458_2790620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012040128.1|2790690_2791593_+	EamA family transporter	NA	NA	NA	NA	NA
WP_007423189.1|2791599_2792541_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_081432893.1|2792537_2793719_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.9	2.9e-25
WP_013640877.1|2793915_2795421_+	Ppx/GppA family phosphatase	NA	NA	NA	NA	NA
WP_035186673.1|2795421_2795952_-	DUF2147 domain-containing protein	NA	NA	NA	NA	NA
WP_012040132.1|2796173_2797169_+	lipid A deacylase LpxR family protein	NA	NA	NA	NA	NA
WP_012040133.1|2797243_2797600_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	48.1	3.5e-14
>prophage 1
NC_009467	Acidiphilium cryptum JF-5 plasmid pACRY01, complete sequence	203589	9867	85164	203589	transposase	Streptococcus_phage(18.18%)	49	NA	NA
WP_011930574.1|9867_10911_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_011930427.1|11942_12653_-|transposase	IS6 family transposase	transposase	A0A1X9I6E7	Streptococcus_phage	38.5	2.3e-25
WP_011930570.1|14155_15196_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_011930569.1|15616_16633_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_155856271.1|18462_18726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011930565.1|18694_20044_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	37.3	1.1e-55
WP_155856272.1|20404_20665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155856273.1|21364_21517_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_011930564.1|22308_22620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930562.1|23751_24960_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	46.6	1.0e-94
WP_043508769.1|25665_26481_-	glyoxalase	NA	NA	NA	NA	NA
WP_011930559.1|26465_26924_-	cupin	NA	NA	NA	NA	NA
WP_011930558.1|26920_27385_-	DoxX family protein	NA	NA	NA	NA	NA
WP_011930556.1|27998_29513_-	mercuric reductase	NA	NA	NA	NA	NA
WP_011930555.1|29515_30799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011930554.1|30804_32238_-	glycoside hydrolase	NA	NA	NA	NA	NA
WP_011930553.1|32234_33797_-	GMC family oxidoreductase	NA	NA	NA	NA	NA
WP_011930552.1|33802_34612_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	29.8	2.0e-17
WP_155856274.1|35439_35766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930549.1|35853_44382_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_011930548.1|44515_45322_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011930547.1|45388_45715_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011930546.1|46127_47306_-	class I SAM-dependent methyltransferase	NA	A0A2I2L5L3	Orpheovirus	41.3	1.3e-49
WP_155856275.1|47455_47911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011930506.1|48368_50351_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_155856276.1|50395_51673_-	PHB depolymerase family esterase	NA	NA	NA	NA	NA
WP_011930545.1|51818_51989_-	CsbD family protein	NA	NA	NA	NA	NA
WP_011930509.1|52423_52981_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_043508772.1|53110_53335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011930511.1|53348_53687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155856290.1|53738_53933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155856277.1|55009_55258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011930539.1|57097_58138_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_011930538.1|58471_59488_+|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	27.7	5.1e-10
WP_011930501.1|60648_61905_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
WP_155856291.1|62983_63136_+	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_155856278.1|63835_64096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043508774.1|64361_64541_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930535.1|65814_67458_+|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_011930533.1|68002_68251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930532.1|68805_69588_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	34.7	4.5e-30
WP_011930482.1|70522_71398_-	ATPase AAA	NA	A0A059NT77	Lactococcus_phage	34.2	2.5e-29
WP_011930483.1|71394_72924_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_155856279.1|73406_73739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930530.1|75371_79709_+	response regulator	NA	A0A1V0SGX0	Hokovirus	25.1	1.6e-15
WP_011930529.1|80153_81200_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_011930484.1|82616_83825_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	46.8	3.6e-95
WP_155856280.1|84296_84566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930527.1|84453_85164_-|transposase	IS6 family transposase	transposase	A0A1X9I6E7	Streptococcus_phage	38.5	3.0e-25
>prophage 2
NC_009467	Acidiphilium cryptum JF-5 plasmid pACRY01, complete sequence	203589	94195	161017	203589	transposase	Corynebacterium_phage(13.33%)	57	NA	NA
WP_011930484.1|94195_95404_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	46.8	3.6e-95
WP_081432806.1|96209_96482_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930514.1|96949_97573_+|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
WP_155856292.1|97407_98121_+|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
WP_155856290.1|98879_99074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930511.1|99125_99464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043508772.1|99477_99702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930509.1|99831_100389_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011930545.1|100823_100994_+	CsbD family protein	NA	NA	NA	NA	NA
WP_155856276.1|101139_102417_+	PHB depolymerase family esterase	NA	NA	NA	NA	NA
WP_011930506.1|102461_104444_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_043508783.1|104656_105076_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_043508784.1|105466_105886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011930502.1|106951_107788_+	slipin family protein	NA	A0A0U2UF06	Niemeyer_virus	32.5	7.2e-26
WP_011930501.1|108037_109294_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
WP_011930499.1|111081_111759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930498.1|111776_112193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930497.1|112482_114747_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_011930496.1|114876_117558_+	plasma-membrane proton-efflux P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	25.6	1.5e-48
WP_011941795.1|117811_118843_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_011930494.1|118967_119774_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_099156038.1|120082_120715_-|transposase	IS6-like element ISAcr2 family transposase	transposase	A0A077SL39	Escherichia_phage	66.8	2.2e-83
WP_081432807.1|120747_120924_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011930491.1|121947_123171_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.1	1.2e-40
WP_011930489.1|123842_124535_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA	NA
WP_155856283.1|125943_126285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043508786.1|126526_126730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011930488.1|127228_128599_+	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	37.3	2.4e-55
WP_081432809.1|129083_129350_+	DUF2147 domain-containing protein	NA	NA	NA	NA	NA
WP_011930487.1|129491_130319_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_011930486.1|130376_130631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155856284.1|130925_131180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930485.1|131325_131589_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_011930484.1|131728_132937_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	46.8	3.6e-95
WP_155856285.1|132933_133350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930483.1|133464_134994_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_011930482.1|134990_135866_+	ATPase AAA	NA	A0A059NT77	Lactococcus_phage	34.2	2.5e-29
WP_011930481.1|135928_137575_-|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_155856286.1|138165_138375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011930479.1|138371_139010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043508788.1|139095_144195_-	relaxase domain-containing protein	NA	NA	NA	NA	NA
WP_011930477.1|144188_144527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081432810.1|144790_145345_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930475.1|145354_146245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930474.1|146460_146946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930473.1|146950_147355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081432811.1|147822_149052_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	44.4	5.7e-72
WP_011930470.1|149079_149886_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	32.9	4.9e-32
WP_011930469.1|149875_151402_-|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	25.6	1.4e-19
WP_011930468.1|151499_152534_-	E1-E2 ATPase-associated domain-containing protein	NA	E4ZFI9	Streptococcus_phage	34.9	1.1e-44
WP_081432812.1|152599_153028_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_081432813.1|153037_154285_-	MFS transporter	NA	NA	NA	NA	NA
WP_011930465.1|154281_155013_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_011930464.1|155098_155764_+	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA	NA
WP_011930463.1|155936_156224_-	HigA family addiction module antidote protein	NA	A0A0M3LPV0	Mannheimia_phage	41.6	1.5e-12
WP_011930462.1|156235_156514_-	plasmid maintenance system killer	NA	A0A2L1IV28	Escherichia_phage	41.3	5.8e-17
WP_011930460.1|159793_161017_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.7	4.7e-42
>prophage 1
NC_009468	Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence	187422	5853	56460	187422	transposase	Aeromonas_phage(16.67%)	51	NA	NA
WP_043508926.1|5853_7950_+	ATP-dependent helicase	NA	A7KV33	Bacillus_phage	29.8	7.7e-69
WP_011930744.1|7942_8677_+	SOS response-associated peptidase	NA	A0A291AUP1	Sinorhizobium_phage	50.2	1.7e-55
WP_011930743.1|8577_9501_-|transposase	transposase	transposase	O80301	Enterobacteria_phage	32.8	5.5e-19
WP_081432838.1|9624_11154_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_011930741.1|11150_12026_+	ATPase AAA	NA	A0A059NT77	Lactococcus_phage	33.9	9.5e-29
WP_011930740.1|12088_12448_-	helix-turn-helix domain-containing protein	NA	A0A1I9KF42	Aeromonas_phage	35.1	8.4e-08
WP_011930739.1|12471_12888_+|transposase	IS200/IS605 family transposase	transposase	I4AZM1	Saccharomonospora_phage	46.8	3.0e-25
WP_155856295.1|13348_14263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930737.1|14556_15813_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_011930736.1|15809_16952_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011930735.1|16944_17709_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.8	2.2e-34
WP_011930734.1|18026_18344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043508872.1|18374_18614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011930733.1|19015_20407_-	replication protein C	NA	L7TKN6	Rhizobium_phage	27.0	3.7e-11
WP_081432823.1|20589_20802_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043508932.1|21034_21901_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011930731.1|22009_23197_+	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA	NA
WP_011930730.1|23193_24246_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_155856312.1|24630_24858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011930728.1|25325_25595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043508875.1|25766_26090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930726.1|26163_28842_+	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA	NA
WP_011930725.1|29132_30722_+	type I-E CRISPR-associated protein Cse1/CasA	NA	NA	NA	NA	NA
WP_011930724.1|30718_31258_+	type I-E CRISPR-associated protein Cse2/CasB	NA	NA	NA	NA	NA
WP_011930723.1|31257_32370_+	type I-E CRISPR-associated protein Cas7/Cse4/CasC	NA	NA	NA	NA	NA
WP_011930722.1|32371_33121_+	type I-E CRISPR-associated protein Cas5/CasD	NA	NA	NA	NA	NA
WP_011930721.1|33126_33804_+	type I-E CRISPR-associated protein Cas6/Cse3/CasE	NA	NA	NA	NA	NA
WP_007424557.1|33796_34759_+	type I-E CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
WP_081432824.1|34739_35066_+	type I-E CRISPR-associated endoribonuclease Cas2	NA	NA	NA	NA	NA
WP_011930720.1|38111_40184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011930719.1|40186_41011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011930718.1|41007_41421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043508878.1|41620_42250_+|transposase	IS607 family transposase	transposase	A0A7Q0	Microcystis_virus	60.8	7.2e-63
WP_011930716.1|42243_43443_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A7P9	Microcystis_virus	40.0	7.3e-72
WP_043508880.1|43496_43679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930715.1|43829_44450_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_081432825.1|44446_45445_+	Holliday junction branch migration DNA helicase RuvB	NA	NA	NA	NA	NA
WP_011930713.1|45444_45996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081432839.1|46164_46320_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_043508881.1|46667_46955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155856296.1|46977_47367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043508935.1|47660_48353_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_011930709.1|48345_48891_+	cytochrome b	NA	NA	NA	NA	NA
WP_155856297.1|49462_49705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007421341.1|49941_50958_+|transposase	IS1595-like element ISAcr1 family transposase	transposase	NA	NA	NA	NA
WP_011930708.1|51403_52369_-	sensor domain-containing diguanylate cyclase	NA	G3MA91	Bacillus_virus	31.9	2.3e-20
WP_011930707.1|53071_53572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930706.1|53884_54379_+	LysE family transporter	NA	NA	NA	NA	NA
WP_011930705.1|54385_55231_-	EamA family transporter	NA	NA	NA	NA	NA
WP_043508886.1|55334_55844_-	recombinase family protein	NA	A0A219Y9V9	Aeromonas_phage	49.0	9.7e-26
WP_011930703.1|55947_56460_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
NC_009468	Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence	187422	94822	132533	187422	transposase	Acidithiobacillus_phage(25.0%)	30	NA	NA
WP_011930665.1|94822_96502_+|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_081432840.1|97089_97416_-	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_043508904.1|97969_98353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930662.1|99227_100943_-	ubiquinone-dependent pyruvate dehydrogenase	NA	E5ERI2	Ostreococcus_lucimarinus_virus	23.8	1.4e-15
WP_011930661.1|100956_102585_-	FMN-binding glutamate synthase family protein	NA	NA	NA	NA	NA
WP_011930660.1|103175_104042_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_011930658.1|104710_105934_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.2	1.2e-40
WP_081432828.1|108920_109058_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_043508907.1|109406_109601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043508908.1|109590_111663_+	recombinase family protein	NA	A0A1B2LRQ3	Wolbachia_phage	24.0	5.7e-08
WP_081432831.1|114436_114688_-	abortive infection family protein	NA	NA	NA	NA	NA
WP_011930651.1|114945_115974_-	aldehyde reductase	NA	NA	NA	NA	NA
WP_011930650.1|116043_116397_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011930648.1|116927_118475_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	47.9	5.1e-126
WP_011930647.1|118492_119239_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	49.8	7.7e-64
WP_011930646.1|120005_120416_-	DUF2000 domain-containing protein	NA	NA	NA	NA	NA
WP_043508912.1|120450_121287_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_011930644.1|121974_122688_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011930643.1|122848_123253_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_155856304.1|123249_124173_+	NAD-binding protein	NA	A0A077SLF7	Escherichia_phage	25.8	8.2e-15
WP_011930641.1|124228_125566_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	23.6	2.9e-13
WP_155856305.1|125552_126365_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_011930639.1|126361_127243_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_011930638.1|127235_128147_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011930637.1|128143_128524_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_011930636.1|128520_129273_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_011930635.1|129512_129839_+	NIPSNAP family protein	NA	NA	NA	NA	NA
WP_081432833.1|130004_130352_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_155856306.1|130411_131579_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	38.0	1.5e-37
WP_011930631.1|131822_132533_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 1
NC_009469	Acidiphilium cryptum JF-5 plasmid pACRY03, complete sequence	88953	12625	45584	88953	transposase,integrase	Acidithiobacillus_phage(14.29%)	28	14909:14926	45219:45236
WP_155856318.1|12625_13633_+|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
WP_011930760.1|13616_14444_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011930761.1|14665_15412_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	49.4	3.8e-63
14909:14926	attL	GTCGTCGAGGATCAGCAG	NA	NA	NA	NA
WP_011930648.1|15429_16977_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	47.9	5.1e-126
WP_011930454.1|17436_18690_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_138919284.1|19342_19432_+	potassium-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_155856319.1|19437_19578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930762.1|19599_21297_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_011930763.1|21308_23345_+	potassium-transporting ATPase subunit KdpB	NA	E4ZFI9	Streptococcus_phage	27.3	7.8e-34
WP_007425088.1|23360_23960_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_007425087.1|23976_24477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011930764.1|24584_25796_+	outer membrane beta-barrel protein	NA	NA	NA	NA	NA
WP_011930765.1|26085_28689_+	sensor histidine kinase KdpD	NA	Q8QNA2	Ectocarpus_siliculosus_virus	26.5	5.2e-06
WP_011930766.1|28685_29381_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	29.0	4.3e-24
WP_011930768.1|29817_32808_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	45.6	1.9e-246
WP_011930769.1|32746_33406_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	52.0	4.7e-41
WP_007425034.1|34258_34534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011930771.1|34956_35931_+	recombinase family protein	NA	A0A286S1P7	Klebsiella_phage	46.4	1.6e-32
WP_007424223.1|36269_37616_+|transposase	IS1380-like element ISAcr4 family transposase	transposase	NA	NA	NA	NA
WP_043508964.1|37750_37969_+	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_011930772.1|38073_38616_-	hypothetical protein	NA	A0A1B1IRD0	uncultured_Mediterranean_phage	42.5	9.4e-11
WP_011930773.1|38618_39611_-|integrase	site-specific integrase	integrase	A0A1P8DJ76	Virus_Rctr85	31.2	2.4e-12
WP_011930774.1|39607_40549_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B1P7C7	Bacillus_phage	26.1	2.6e-08
WP_011930775.1|40545_41757_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1L4BKH1	Thermus_phage	32.8	8.5e-12
WP_043508965.1|41816_42509_-	DUF1738 domain-containing protein	NA	A0A1B1IWW8	uncultured_Mediterranean_phage	28.0	3.9e-09
WP_043508966.1|42498_42687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155856320.1|43209_44712_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_011930778.1|44708_45584_+	ATPase AAA	NA	A0A059NT77	Lactococcus_phage	33.5	1.4e-27
45219:45236	attR	CTGCTGATCCTCGACGAC	NA	NA	NA	NA
>prophage 1
NC_009470	Acidiphilium cryptum JF-5 plasmid pACRY04, complete sequence	37415	13257	22942	37415	transposase	Salmonella_phage(33.33%)	6	NA	NA
WP_011930829.1|13257_13974_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	45.9	1.6e-10
WP_011930830.1|14026_16660_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	37.6	1.3e-169
WP_155856331.1|16678_19699_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	46.4	2.4e-244
WP_011930832.1|19768_20977_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	47.0	2.3e-94
WP_011930833.1|21119_21713_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.4	9.5e-41
WP_155856332.1|22381_22942_+	AAA family ATPase	NA	V5UQM2	Mycobacterium_phage	43.1	1.1e-22
