assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000016785.1_ASM1678v1	NC_009486	Thermotoga petrophila RKU-1, complete sequence	1	523936-524234	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		TnpB_regular.1,cas14k,DEDDh,cas3,cas3HD,csa3,cas2,cas1,cas4,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,WYL,cas14j	Orphan	GTTTCAATAGTTCCTTAGAGGTATGGAAAC,GTTTCAATAGTTCCTTAGAGGTATGGAAAC,GTTTCAATAGTTCCTTAGAGGTATGGAAAC	30,30,30	0	0	NA	NA	III-A:III-A:III-A	4,4,4	4	Orphan	TnpB_regular.1,cas14k,DEDDh,cas3,cas3HD,csa3,cas2,cas1,cas4,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,WYL,cas14j	NA,NA	NA|185aa|up_9|NC_009486.1_512997_513552_+	COG1435, Tdk, Thymidine kinase [Nucleotide transport and metabolism]	NA|406aa|up_8|NC_009486.1_513535_514753_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|226aa|up_7|NC_009486.1_514733_515411_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|378aa|up_6|NC_009486.1_515811_516945_+	cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type	NA|508aa|up_5|NC_009486.1_516937_518461_+	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]	NA|152aa|up_4|NC_009486.1_518457_518913_+	cd10563, CooF_like, CooF, iron-sulfur subunit of carbon monoxide dehydrogenase	NA|426aa|up_3|NC_009486.1_518909_520187_+	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]	NA|246aa|up_2|NC_009486.1_520174_520912_+	cd00981, arch_gltB, Archaeal-type gltB domain	NA|372aa|up_1|NC_009486.1_520938_522054_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|407aa|up_0|NC_009486.1_522058_523279_-	cd03792, GT4_trehalose_phosphorylase, trehalose phosphorylase and similar proteins	NA|322aa|down_0|NC_009486.1_524343_525309_+	COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|444aa|down_1|NC_009486.1_525415_526747_+	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase	NA|112aa|down_2|NC_009486.1_526771_527107_+	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|450aa|down_3|NC_009486.1_527152_528502_+	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase	NA|221aa|down_4|NC_009486.1_528478_529141_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|167aa|down_5|NC_009486.1_529169_529670_+	cd02150, nitroreductase, nitroreductase family protein	NA|184aa|down_6|NC_009486.1_529795_530347_+	TIGR02826, hypothetical_protein, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|652aa|down_7|NC_009486.1_530312_532268_+	PRK08271, PRK08271, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|322aa|down_8|NC_009486.1_532349_533315_+	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD	NA|362aa|down_9|NC_009486.1_534304_535390_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein
GCF_000016785.1_ASM1678v1	NC_009486	Thermotoga petrophila RKU-1, complete sequence	2	536387-537215	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no		TnpB_regular.1,cas14k,DEDDh,cas3,cas3HD,csa3,cas2,cas1,cas4,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,WYL,cas14j	Orphan	GTTTCCATACCTCTAAGGAACTATTGAAAC,GTTTCCATACCTCTAAGGAACTATTGAAAC,GTTTCAATAGTTCCTTAGAGGTATGGAAAC	30,30,30	0	0	NA	NA	III-A:III-A:III-A	12,12,11	12	Orphan	TnpB_regular.1,cas14k,DEDDh,cas3,cas3HD,csa3,cas2,cas1,cas4,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,WYL,cas14j	NA,NA	NA|444aa|up_9|NC_009486.1_525415_526747_+	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase	NA|112aa|up_8|NC_009486.1_526771_527107_+	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|450aa|up_7|NC_009486.1_527152_528502_+	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase	NA|221aa|up_6|NC_009486.1_528478_529141_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|167aa|up_5|NC_009486.1_529169_529670_+	cd02150, nitroreductase, nitroreductase family protein	NA|184aa|up_4|NC_009486.1_529795_530347_+	TIGR02826, hypothetical_protein, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|652aa|up_3|NC_009486.1_530312_532268_+	PRK08271, PRK08271, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|322aa|up_2|NC_009486.1_532349_533315_+	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD	NA|362aa|up_1|NC_009486.1_534304_535390_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|302aa|up_0|NC_009486.1_535386_536292_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|242aa|down_0|NC_009486.1_537841_538567_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|196aa|down_1|NC_009486.1_538645_539233_+	PRK15070, PRK15070, phosphate propanoyltransferase	NA|148aa|down_2|NC_009486.1_539262_539706_-	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|597aa|down_3|NC_009486.1_539721_541512_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|1001aa|down_4|NC_009486.1_541745_544748_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|153aa|down_5|NC_009486.1_544737_545196_-	TIGR01529, Arginine_repressor	NA|243aa|down_6|NC_009486.1_545367_546096_+	PRK04328, PRK04328, hypothetical protein; Provisional	NA|149aa|down_7|NC_009486.1_546092_546539_+	COG1318, COG1318, Predicted transcriptional regulators [Transcription]	NA|370aa|down_8|NC_009486.1_546548_547658_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|661aa|down_9|NC_009486.1_547797_549780_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
GCF_000016785.1_ASM1678v1	NC_009486	Thermotoga petrophila RKU-1, complete sequence	3	568240-568733	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no		TnpB_regular.1,cas14k,DEDDh,cas3,cas3HD,csa3,cas2,cas1,cas4,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,WYL,cas14j	Orphan	GTTTCCATACCTCTAAGGAACTATTGAAAC,GTTTCCATACCTCTAAGGAACTATTGAAAC,GTTTCAATAGTTCCTTAGAGGTATGGAAAC	30,30,30	0	0	NA	NA	III-A:III-A:III-A	7,7,6	7	Orphan	TnpB_regular.1,cas14k,DEDDh,cas3,cas3HD,csa3,cas2,cas1,cas4,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,WYL,cas14j	NA|69aa|up_7|NC_009486.1_560012_560219_-,NA|59aa|down_9|NC_009486.1_578240_578417_-	NA|357aa|up_9|NC_009486.1_558017_559088_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|303aa|up_8|NC_009486.1_559101_560010_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|69aa|up_7|NC_009486.1_560012_560219_-	NA	NA|398aa|up_6|NC_009486.1_560300_561494_-	cd08186, Fe-ADH-like, Iron-containing alcohol dehydrogenase	NA|402aa|up_5|NC_009486.1_561590_562796_-	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|329aa|up_4|NC_009486.1_562963_563950_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|433aa|up_3|NC_009486.1_563965_565264_+	pfam02321, OEP, Outer membrane efflux protein	NA|336aa|up_2|NC_009486.1_565260_566268_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|235aa|up_1|NC_009486.1_566264_566969_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|405aa|up_0|NC_009486.1_566955_568170_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|201aa|down_0|NC_009486.1_569356_569959_+	pfam01810, LysE, LysE type translocator	NA|145aa|down_1|NC_009486.1_569951_570386_-	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|493aa|down_2|NC_009486.1_570382_571861_-	PRK13951, PRK13951, bifunctional shikimate kinase AroK/3-dehydroquinate synthase AroB	NA|377aa|down_3|NC_009486.1_571808_572939_-	TIGR00033, Chorismate_synthase, chorismate synthase	NA|254aa|down_4|NC_009486.1_572935_573697_-	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]	NA|422aa|down_5|NC_009486.1_573693_574959_-	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|254aa|down_6|NC_009486.1_574955_575717_-	COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and metabolism]	NA|339aa|down_7|NC_009486.1_575713_576730_-	PRK08673, PRK08673, 3-deoxy-7-phosphoheptulonate synthase; Reviewed	NA|414aa|down_8|NC_009486.1_576986_578228_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|59aa|down_9|NC_009486.1_578240_578417_-	NA
GCF_000016785.1_ASM1678v1	NC_009486	Thermotoga petrophila RKU-1, complete sequence	4	940034-941261	4,4,4	CRISPRCasFinder,CRT,PILER-CR	no		TnpB_regular.1,cas14k,DEDDh,cas3,cas3HD,csa3,cas2,cas1,cas4,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,WYL,cas14j	Orphan	GTTTCCATACCTCTAAGGAATTATTGAAAC,GTTTCCATACCTCTAAGGAA,GTTTCAATAATTCCTTAGAGGTATGGAAAC	30,20,30	0	0	NA	NA	III-A:III-A:III-A	18,18,18	18	Orphan	TnpB_regular.1,cas14k,DEDDh,cas3,cas3HD,csa3,cas2,cas1,cas4,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,WYL,cas14j	NA,NA	NA|279aa|up_9|NC_009486.1_929984_930821_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|254aa|up_8|NC_009486.1_930830_931592_-	COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion]	NA|163aa|up_7|NC_009486.1_931795_932284_+	COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]	NA|127aa|up_6|NC_009486.1_932286_932667_+	COG3411, COG3411, Ferredoxin [Energy production and conversion]	NA|608aa|up_5|NC_009486.1_932685_934509_+	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]	NA|143aa|up_4|NC_009486.1_934505_934934_+	COG1633, COG1633, Uncharacterized conserved protein [Function unknown]	NA|225aa|up_3|NC_009486.1_934969_935644_-	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism]	NA|439aa|up_2|NC_009486.1_935677_936994_+	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|346aa|up_1|NC_009486.1_936997_938035_+	cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides	NA|651aa|up_0|NC_009486.1_938031_939984_+	TIGR00376, DNA-binding_protein_SMUBP-2, DNA helicase, putative	NA|509aa|down_0|NC_009486.1_941896_943423_-	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed	NA|250aa|down_1|NC_009486.1_943497_944247_+	COG1856, COG1856, Uncharacterized homolog of biotin synthetase [Function unknown]	NA|255aa|down_2|NC_009486.1_944230_944995_-	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain	NA|465aa|down_3|NC_009486.1_945027_946422_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|67aa|down_4|NC_009486.1_946519_946720_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|389aa|down_5|NC_009486.1_946953_948120_+	cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase	NA|133aa|down_6|NC_009486.1_948121_948520_-	pfam01894, UPF0047, Uncharacterized protein family UPF0047	NA|92aa|down_7|NC_009486.1_948535_948811_-	COG0851, MinE, Septum formation topological specificity factor [Cell division and chromosome partitioning]	NA|272aa|down_8|NC_009486.1_948815_949631_-	TIGR01968, Septum_site-determining_protein_MinD, septum site-determining protein MinD	NA|795aa|down_9|NC_009486.1_949730_952115_+	pfam13654, AAA_32, AAA domain
GCF_000016785.1_ASM1678v1	NC_009486	Thermotoga petrophila RKU-1, complete sequence	5	1107494-1110144	5,5,5	CRT,CRISPRCasFinder,PILER-CR	no	csa3,cas2,cas1,cas4,cas3,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1	TnpB_regular.1,cas14k,DEDDh,cas3,cas3HD,csa3,cas2,cas1,cas4,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,WYL,cas14j	Type III-C,Type III-B,Type III-A,Type III-D	GTTCATATTCCTCTTAGGAAGATAAAAAC,GTTCATATTCCTCTTAGGAAGATAAAAAC,GTTCATATTCCTCTTAGGAAGATAAAAAC	29,29,29	0	0	NA	NA	NA:NA:NA	40,39,39	40	TypeIII-C,TypeIII-B,TypeIII-A,TypeIII-D	TnpB_regular.1,cas14k,DEDDh,cas3,cas3HD,csa3,cas2,cas1,cas4,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,WYL,cas14j	NA|109aa|up_2|NC_009486.1_1103233_1103560_+,NA|157aa|down_9|NC_009486.1_1119622_1120093_+	NA|399aa|up_9|NC_009486.1_1096149_1097346_+	COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and metabolism]	NA|340aa|up_8|NC_009486.1_1097342_1098362_+	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|398aa|up_7|NC_009486.1_1098378_1099572_+	pfam01960, ArgJ, ArgJ family	NA|283aa|up_6|NC_009486.1_1099568_1100417_+	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|386aa|up_5|NC_009486.1_1100419_1101577_+	PRK02627, PRK02627, acetylornithine aminotransferase; Provisional	NA|61aa|up_4|NC_009486.1_1101596_1101779_-	cd01407, SIR2-fam, SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose	csa3|81aa|up_3|NC_009486.1_1102976_1103219_+	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|109aa|up_2|NC_009486.1_1103233_1103560_+	NA	NA|182aa|up_1|NC_009486.1_1103914_1104460_-	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only]	NA|284aa|up_0|NC_009486.1_1104537_1105389_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	cas2|94aa|down_0|NC_009486.1_1110222_1110504_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|328aa|down_1|NC_009486.1_1110513_1111497_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|173aa|down_2|NC_009486.1_1111506_1112025_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|764aa|down_3|NC_009486.1_1112027_1114319_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|261aa|down_4|NC_009486.1_1114321_1115104_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas7|333aa|down_5|NC_009486.1_1115100_1116099_-	pfam01905, DevR, CRISPR-associated negative auto-regulator DevR/Csa2	NA|441aa|down_6|NC_009486.1_1116091_1117414_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|242aa|down_7|NC_009486.1_1117623_1118349_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|117aa|down_8|NC_009486.1_1119281_1119632_+	smart00271, DnaJ, DnaJ molecular chaperone homology domain	NA|157aa|down_9|NC_009486.1_1119622_1120093_+	NA
GCF_000016785.1_ASM1678v1	NC_009486	Thermotoga petrophila RKU-1, complete sequence	6	1171790-1172614	6,6,6	PILER-CR,CRISPRCasFinder,CRT	no		TnpB_regular.1,cas14k,DEDDh,cas3,cas3HD,csa3,cas2,cas1,cas4,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,WYL,cas14j	Orphan	GTTTCAATAATTCCTTAGAGGTATGGAAAC,GTTTCAATAATTCCTTAGAGGTATGGAAAC,GTTTCAATAATTCCTTAGAGGTATGGAAAC	30,30,30	0	0	NA	NA	III-A:III-A:III-A	12,12,12	12	Orphan	TnpB_regular.1,cas14k,DEDDh,cas3,cas3HD,csa3,cas2,cas1,cas4,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,WYL,cas14j	NA|219aa|up_4|NC_009486.1_1167582_1168239_+,NA|208aa|down_5|NC_009486.1_1177711_1178335_-,NA|129aa|down_8|NC_009486.1_1182025_1182412_-	NA|554aa|up_9|NC_009486.1_1161723_1163385_+	pfam09992, NAGPA, Phosphodiester glycosidase	NA|684aa|up_8|NC_009486.1_1163384_1165436_+	PRK12740, PRK12740, elongation factor G-like protein EF-G2	NA|423aa|up_7|NC_009486.1_1165437_1166706_+	cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in archaeal and bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)	NA|94aa|up_6|NC_009486.1_1166720_1167002_+	COG1550, COG1550, Uncharacterized protein conserved in bacteria [Function unknown]	NA|199aa|up_5|NC_009486.1_1167002_1167599_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|219aa|up_4|NC_009486.1_1167582_1168239_+	NA	NA|153aa|up_3|NC_009486.1_1168235_1168694_+	COG1728, COG1728, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_2|NC_009486.1_1168684_1169506_-	TIGR00078, Probable_nicotinate-nucleotide_pyrophosphorylase, nicotinate-nucleotide pyrophosphorylase	NA|299aa|up_1|NC_009486.1_1169510_1170407_-	PRK09375, PRK09375, quinolinate synthase NadA	NA|242aa|up_0|NC_009486.1_1170419_1171145_-	PRK13303, PRK13303, aspartate dehydrogenase	NA|528aa|down_0|NC_009486.1_1172737_1174321_-	PRK13376, pyrB, bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional	NA|170aa|down_1|NC_009486.1_1174356_1174866_-	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	NA|469aa|down_2|NC_009486.1_1174853_1176260_-	PRK12831, PRK12831, putative oxidoreductase; Provisional	NA|278aa|down_3|NC_009486.1_1176256_1177090_-	PRK06222, PRK06222, sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein	NA|207aa|down_4|NC_009486.1_1177073_1177694_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|208aa|down_5|NC_009486.1_1177711_1178335_-	NA	NA|853aa|down_6|NC_009486.1_1178327_1180886_-	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|383aa|down_7|NC_009486.1_1180875_1182024_-	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|129aa|down_8|NC_009486.1_1182025_1182412_-	NA	NA|788aa|down_9|NC_009486.1_1182408_1184772_-	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
GCF_000016785.1_ASM1678v1	NC_009486	Thermotoga petrophila RKU-1, complete sequence	7	1221108-1221202	7	CRISPRCasFinder	no	WYL	TnpB_regular.1,cas14k,DEDDh,cas3,cas3HD,csa3,cas2,cas1,cas4,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,WYL,cas14j	Unclear	GGTTTTTTCAATTCGAATAATCGAAAGAAC	30	0	0	NA	NA	NA	1	1	Orphan	TnpB_regular.1,cas14k,DEDDh,cas3,cas3HD,csa3,cas2,cas1,cas4,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,WYL,cas14j	NA|261aa|up_5|NC_009486.1_1213683_1214466_-,NA|118aa|up_4|NC_009486.1_1214455_1214809_-,NA	NA|232aa|up_9|NC_009486.1_1209525_1210221_+	PRK14558, pyrH, uridylate kinase; Provisional	NA|423aa|up_8|NC_009486.1_1210217_1211486_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	WYL|174aa|up_7|NC_009486.1_1211489_1212011_-	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only]	NA|552aa|up_6|NC_009486.1_1212031_1213687_-	COG1031, COG1031, Uncharacterized Fe-S oxidoreductase [Energy production and conversion]	NA|261aa|up_5|NC_009486.1_1213683_1214466_-	NA	NA|118aa|up_4|NC_009486.1_1214455_1214809_-	NA	NA|190aa|up_3|NC_009486.1_1214798_1215368_-	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|355aa|up_2|NC_009486.1_1215400_1216465_-	cd06815, PLPDE_III_AR_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1	NA|266aa|up_1|NC_009486.1_1216514_1217312_+	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA)	NA|334aa|up_0|NC_009486.1_1217312_1218314_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|248aa|down_0|NC_009486.1_1221912_1222656_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|119aa|down_1|NC_009486.1_1222666_1223023_-	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|66aa|down_2|NC_009486.1_1223036_1223234_-	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|171aa|down_3|NC_009486.1_1223248_1223761_-	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|241aa|down_4|NC_009486.1_1224550_1225273_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|207aa|down_5|NC_009486.1_1225693_1226314_+	pfam14512, TM1586_NiRdase, Putative TM nitroreductase	NA|418aa|down_6|NC_009486.1_1226292_1227546_+	COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism]	NA|203aa|down_7|NC_009486.1_1227535_1228144_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|361aa|down_8|NC_009486.1_1228137_1229220_-	cd01421, IMPCH, Inosine monophosphate cyclohydrolase domain	NA|148aa|down_9|NC_009486.1_1229232_1229676_-	COG1978, COG1978, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000016785.1_ASM1678v1	NC_009486	Thermotoga petrophila RKU-1, complete sequence	8	1280989-1281151	8	CRISPRCasFinder	no		TnpB_regular.1,cas14k,DEDDh,cas3,cas3HD,csa3,cas2,cas1,cas4,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,WYL,cas14j	Orphan	GTTTCCATACCTCTAAGGAATTATTGAAAC	30	0	0	NA	NA	III-A	2	2	Orphan	TnpB_regular.1,cas14k,DEDDh,cas3,cas3HD,csa3,cas2,cas1,cas4,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,WYL,cas14j	NA,NA|131aa|down_9|NC_009486.1_1289876_1290269_+	NA|114aa|up_9|NC_009486.1_1272843_1273185_-	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|93aa|up_8|NC_009486.1_1273194_1273473_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|439aa|up_7|NC_009486.1_1273479_1274796_-	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|339aa|up_6|NC_009486.1_1274792_1275809_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|286aa|up_5|NC_009486.1_1275801_1276659_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|207aa|up_4|NC_009486.1_1276760_1277381_-	pfam02517, Abi, CAAX protease self-immunity	NA|290aa|up_3|NC_009486.1_1277386_1278256_-	COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]	NA|141aa|up_2|NC_009486.1_1278283_1278706_+	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein	NA|146aa|up_1|NC_009486.1_1278667_1279105_-	COG1633, COG1633, Uncharacterized conserved protein [Function unknown]	NA|275aa|up_0|NC_009486.1_1279255_1280080_-	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|326aa|down_0|NC_009486.1_1282078_1283056_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|237aa|down_1|NC_009486.1_1283060_1283771_+	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|295aa|down_2|NC_009486.1_1283755_1284640_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|217aa|down_3|NC_009486.1_1284636_1285287_+	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|234aa|down_4|NC_009486.1_1285288_1285990_+	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA|402aa|down_5|NC_009486.1_1286005_1287211_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|387aa|down_6|NC_009486.1_1287220_1288381_+	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase	NA|358aa|down_7|NC_009486.1_1288381_1289455_+	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family	NA|137aa|down_8|NC_009486.1_1289469_1289880_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|131aa|down_9|NC_009486.1_1289876_1290269_+	NA
GCF_000016785.1_ASM1678v1	NC_009486	Thermotoga petrophila RKU-1, complete sequence	9	1372310-1372743	7,9,7	PILER-CR,CRISPRCasFinder,CRT	no		TnpB_regular.1,cas14k,DEDDh,cas3,cas3HD,csa3,cas2,cas1,cas4,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,WYL,cas14j	Orphan	GTTTCAATAATTCCTTAGAGGTATGGAAAC,GTTTCAATAATTCCTTAGAGGTATGGAAAC,GTTTCAATAATTCCTTAGAGGTATGGAAAC	30,30,30	0	0	NA	NA	III-A:III-A:III-A	5,6,6	6	Orphan	TnpB_regular.1,cas14k,DEDDh,cas3,cas3HD,csa3,cas2,cas1,cas4,cas5,cas7,cas6,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,WYL,cas14j	NA,NA|51aa|down_2|NC_009486.1_1374753_1374906_+,NA|351aa|down_9|NC_009486.1_1381828_1382881_+	NA|380aa|up_9|NC_009486.1_1362094_1363234_-	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|522aa|up_8|NC_009486.1_1363220_1364786_-	COG4624, COG4624, Iron only hydrogenase large subunit, C-terminal domain [General function prediction only]	NA|76aa|up_7|NC_009486.1_1364778_1365006_-	COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]	NA|383aa|up_6|NC_009486.1_1365273_1366422_+	COG1260, INO1, Myo-inositol-1-phosphate synthase [Lipid metabolism]	NA|242aa|up_5|NC_009486.1_1366462_1367188_+	COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]	NA|206aa|up_4|NC_009486.1_1367181_1367799_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|244aa|up_3|NC_009486.1_1367831_1368563_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|318aa|up_2|NC_009486.1_1368559_1369513_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|257aa|up_1|NC_009486.1_1369669_1370440_+	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	NA|433aa|up_0|NC_009486.1_1370441_1371740_+	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]	NA|257aa|down_0|NC_009486.1_1372855_1373626_-	TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein	NA|328aa|down_1|NC_009486.1_1373630_1374614_-	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein	NA|51aa|down_2|NC_009486.1_1374753_1374906_+	NA	NA|307aa|down_3|NC_009486.1_1374886_1375807_-	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains	NA|385aa|down_4|NC_009486.1_1375812_1376967_-	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]	NA|186aa|down_5|NC_009486.1_1377173_1377731_+	PRK00083, frr, ribosome recycling factor; Reviewed	NA|234aa|down_6|NC_009486.1_1377727_1378429_+	PRK14841, PRK14841, undecaprenyl pyrophosphate synthase; Provisional	NA|271aa|down_7|NC_009486.1_1378421_1379234_+	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|864aa|down_8|NC_009486.1_1379230_1381822_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|351aa|down_9|NC_009486.1_1381828_1382881_+	NA
