assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000017265.1_ASM1726v1	NC_011144	Phenylobacterium zucineum HLK1, complete sequence	1	1160253-1160386	1	CRISPRCasFinder	no	csa3	DEDDh,csa3,WYL,RT,DinG,cas3	Type I-A	GGCCCCCTCCACCGCTGTCGCGGTCCCCCTCCCCCGA	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,RT,DinG,cas3	NA|72aa|up_8|NC_011144.1_1151662_1151878_+,NA|92aa|up_6|NC_011144.1_1154536_1154812_+,NA|52aa|up_5|NC_011144.1_1154818_1154974_-,NA|127aa|up_1|NC_011144.1_1159422_1159803_+,NA|118aa|up_0|NC_011144.1_1159799_1160153_+,NA|103aa|down_5|NC_011144.1_1167071_1167380_+,NA|50aa|down_7|NC_011144.1_1168661_1168811_-	NA|131aa|up_9|NC_011144.1_1150932_1151325_-	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases	NA|72aa|up_8|NC_011144.1_1151662_1151878_+	NA	NA|833aa|up_7|NC_011144.1_1151942_1154441_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|92aa|up_6|NC_011144.1_1154536_1154812_+	NA	NA|52aa|up_5|NC_011144.1_1154818_1154974_-	NA	NA|654aa|up_4|NC_011144.1_1155089_1157051_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|179aa|up_3|NC_011144.1_1157050_1157587_+	pfam13689, DUF4154, Domain of unknown function (DUF4154)	NA|605aa|up_2|NC_011144.1_1157583_1159398_+	PRK13557, PRK13557, histidine kinase; Provisional	NA|127aa|up_1|NC_011144.1_1159422_1159803_+	NA	NA|118aa|up_0|NC_011144.1_1159799_1160153_+	NA	NA|831aa|down_0|NC_011144.1_1160470_1162963_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|354aa|down_1|NC_011144.1_1163273_1164335_+	pfam09925, DUF2157, Predicted membrane protein (DUF2157)	NA|205aa|down_2|NC_011144.1_1164331_1164946_+	pfam14345, GDYXXLXY, GDYXXLXY protein	NA|433aa|down_3|NC_011144.1_1165049_1166348_+	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed	NA|141aa|down_4|NC_011144.1_1166365_1166788_-	cd17546, REC_hyHK_CKI1_RcsC-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinases/response regulators similar to Arabidopsis thaliana CKI1 and Escherichia coli RcsC	NA|103aa|down_5|NC_011144.1_1167071_1167380_+	NA	NA|369aa|down_6|NC_011144.1_1167376_1168483_-	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|50aa|down_7|NC_011144.1_1168661_1168811_-	NA	NA|126aa|down_8|NC_011144.1_1168881_1169259_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|348aa|down_9|NC_011144.1_1169293_1170337_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold
GCF_000017265.1_ASM1726v1	NC_011144	Phenylobacterium zucineum HLK1, complete sequence	2	1418678-1418926	1	CRT	no	csa3	DEDDh,csa3,WYL,RT,DinG,cas3	Type I-A	NATCGCCGGCTCGGGCGA	18	0	0	NA	NA	NA	4	4	Orphan	DEDDh,csa3,WYL,RT,DinG,cas3	NA|218aa|up_4|NC_011144.1_1412693_1413347_-,NA	NA|1357aa|up_9|NC_011144.1_1400554_1404625_+	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|1398aa|up_8|NC_011144.1_1404726_1408920_+	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|655aa|up_7|NC_011144.1_1409057_1411022_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|109aa|up_6|NC_011144.1_1411099_1411426_+	COG3809, COG3809, Uncharacterized protein conserved in bacteria [Function unknown]	NA|368aa|up_5|NC_011144.1_1411572_1412676_+	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins	NA|218aa|up_4|NC_011144.1_1412693_1413347_-	NA	NA|124aa|up_3|NC_011144.1_1413676_1414048_+	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|158aa|up_2|NC_011144.1_1414059_1414533_+	PRK05302, PRK05302, 30S ribosomal protein S7; Validated	NA|693aa|up_1|NC_011144.1_1414635_1416714_+	PRK00007, PRK00007, elongation factor G; Reviewed	NA|397aa|up_0|NC_011144.1_1416763_1417954_+	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|103aa|down_0|NC_011144.1_1419284_1419593_+	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed	NA|262aa|down_1|NC_011144.1_1419606_1420392_+	PRK00001, rplC, 50S ribosomal protein L3; Validated	NA|213aa|down_2|NC_011144.1_1420391_1421030_+	PRK05319, rplD, 50S ribosomal protein L4; Provisional	NA|101aa|down_3|NC_011144.1_1421029_1421332_+	PRK05738, rplW, 50S ribosomal protein L23; Reviewed	NA|279aa|down_4|NC_011144.1_1421336_1422173_+	PRK09374, rplB, 50S ribosomal protein L2; Validated	NA|93aa|down_5|NC_011144.1_1422176_1422455_+	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed	NA|127aa|down_6|NC_011144.1_1422456_1422837_+	PRK00565, rplV, 50S ribosomal protein L22; Reviewed	NA|254aa|down_7|NC_011144.1_1422836_1423598_+	PRK00310, rpsC, 30S ribosomal protein S3; Reviewed	NA|143aa|down_8|NC_011144.1_1423611_1424040_+	PRK09203, rplP, 50S ribosomal protein L16; Reviewed	NA|65aa|down_9|NC_011144.1_1424039_1424234_+	PRK00306, PRK00306, 50S ribosomal protein L29; Reviewed
GCF_000017265.1_ASM1726v1	NC_011144	Phenylobacterium zucineum HLK1, complete sequence	3	2030730-2031103	2	CRISPRCasFinder	no		DEDDh,csa3,WYL,RT,DinG,cas3	Orphan	CCGCCGCCGAAGCCCCCGTCGCCGCC	26	3	8	2030864-2030879|2030906-2030921|2030906-2030921|2030906-2030921|2030906-2030921|2030948-2030963|2030948-2030963|2030948-2030963	NC_011144.1_1780693-1780708|NC_011143.1_312524-312539|NC_011144.1_1832048-1832063|NC_011144.1_2336236-2336251|NC_011144.1_2363452-2363467|NC_011144.1_155205-155220|NC_011144.1_925619-925634|NC_011144.1_1108017-1108032	NA	7	7	Orphan	DEDDh,csa3,WYL,RT,DinG,cas3	NA,NA	NA|194aa|up_9|NC_011144.1_2018787_2019369_-	PRK06411, PRK06411, NADH-quinone oxidoreductase subunit NuoB	NA|126aa|up_8|NC_011144.1_2019338_2019716_-	PRK06602, PRK06602, NADH:ubiquinone oxidoreductase subunit A; Validated	NA|261aa|up_7|NC_011144.1_2020034_2020817_-	pfam09864, MliC, Membrane-bound lysozyme-inhibitor of c-type lysozyme	NA|642aa|up_6|NC_011144.1_2020840_2022766_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|307aa|up_5|NC_011144.1_2022855_2023776_-	cd19095, AKR_PA4992-like, Pseudomona aeruginosa PA4992 and similar proteins	NA|468aa|up_4|NC_011144.1_2023893_2025297_-	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters	NA|191aa|up_3|NC_011144.1_2025323_2025896_-	COG2119, COG2119, Predicted membrane protein [Function unknown]	NA|92aa|up_2|NC_011144.1_2026187_2026463_-	cd13831, HU, histone-like DNA-binding protein HU	NA|801aa|up_1|NC_011144.1_2026637_2029040_-	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|150aa|up_0|NC_011144.1_2029349_2029799_-	NF033203, entero_EhxA, enterohemolysin EhxA	NA|421aa|down_0|NC_011144.1_2031742_2033005_-	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|209aa|down_1|NC_011144.1_2033239_2033866_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|467aa|down_2|NC_011144.1_2033862_2035263_-	TIGR02400, Alphaalpha-trehalose-phosphate_synthase, alpha,alpha-trehalose-phosphate synthase [UDP-forming]	NA|98aa|down_3|NC_011144.1_2035291_2035585_-	PRK13435, PRK13435, response regulator; Provisional	NA|206aa|down_4|NC_011144.1_2035728_2036346_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|213aa|down_5|NC_011144.1_2036438_2037077_-	cd03025, DsbA_FrnE_like, DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE	NA|71aa|down_6|NC_011144.1_2037228_2037441_+	pfam09954, DUF2188, Uncharacterized protein conserved in bacteria (DUF2188)	NA|119aa|down_7|NC_011144.1_2037437_2037794_-	pfam07946, DUF1682, Protein of unknown function (DUF1682)	NA|140aa|down_8|NC_011144.1_2037858_2038278_-	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|625aa|down_9|NC_011144.1_2038536_2040411_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
GCF_000017265.1_ASM1726v1	NC_011144	Phenylobacterium zucineum HLK1, complete sequence	4	2855370-2855464	3	CRISPRCasFinder	no		DEDDh,csa3,WYL,RT,DinG,cas3	Orphan	TTCGTGCTCAGGTCGTTGTTGTT	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,RT,DinG,cas3	NA|180aa|up_2|NC_011144.1_2853173_2853713_-,NA|146aa|up_0|NC_011144.1_2854478_2854916_-,NA	NA|370aa|up_9|NC_011144.1_2844391_2845501_-	pfam00331, Glyco_hydro_10, Glycosyl hydrolase family 10	NA|231aa|up_8|NC_011144.1_2845663_2846356_-	pfam17036, CBP_BcsS, Cellulose biosynthesis protein BcsS	NA|363aa|up_7|NC_011144.1_2846585_2847674_+	pfam00331, Glyco_hydro_10, Glycosyl hydrolase family 10	NA|380aa|up_6|NC_011144.1_2847686_2848826_-	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|483aa|up_5|NC_011144.1_2848838_2850287_-	pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 2	NA|377aa|up_4|NC_011144.1_2850331_2851462_-	cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs	NA|413aa|up_3|NC_011144.1_2851775_2853014_+	pfam04102, SlyX, SlyX	NA|180aa|up_2|NC_011144.1_2853173_2853713_-	NA	NA|251aa|up_1|NC_011144.1_2853709_2854462_-	cd02423, Peptidase_C39G, A sub-family of peptidase family C39	NA|146aa|up_0|NC_011144.1_2854478_2854916_-	NA	NA|209aa|down_0|NC_011144.1_2856176_2856803_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|244aa|down_1|NC_011144.1_2856927_2857659_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|157aa|down_2|NC_011144.1_2858621_2859092_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|362aa|down_3|NC_011144.1_2859328_2860414_-	cd13654, PBP2_phosphate_like_2, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|268aa|down_4|NC_011144.1_2860480_2861284_-	pfam07885, Ion_trans_2, Ion channel	NA|65aa|down_5|NC_011144.1_2861381_2861576_+	pfam11450, DUF3008, Protein of unknwon function (DUF3008)	NA|496aa|down_6|NC_011144.1_2861659_2863147_+	PRK07869, PRK07869, amidase; Provisional	NA|358aa|down_7|NC_011144.1_2863143_2864217_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|389aa|down_8|NC_011144.1_2864218_2865385_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|446aa|down_9|NC_011144.1_2865489_2866827_+	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
GCF_000017265.1_ASM1726v1	NC_011144	Phenylobacterium zucineum HLK1, complete sequence	5	3679716-3679896	4	CRISPRCasFinder	no		DEDDh,csa3,WYL,RT,DinG,cas3	Orphan	GACCACCGGCACGATGGGCGACACC	25	0	0	NA	NA	NA	3	3	Orphan	DEDDh,csa3,WYL,RT,DinG,cas3	NA,NA|87aa|down_3|NC_011144.1_3683168_3683429_-	NA|278aa|up_9|NC_011144.1_3669332_3670166_-	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|344aa|up_8|NC_011144.1_3670162_3671194_-	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB	NA|197aa|up_7|NC_011144.1_3671729_3672320_+	pfam04940, BLUF, Sensors of blue-light using FAD	NA|532aa|up_6|NC_011144.1_3672470_3674066_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|278aa|up_5|NC_011144.1_3674041_3674875_-	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family	NA|232aa|up_4|NC_011144.1_3674918_3675614_-	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins	NA|141aa|up_3|NC_011144.1_3676780_3677203_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|155aa|up_2|NC_011144.1_3677199_3677664_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|398aa|up_1|NC_011144.1_3677833_3679027_+	PRK08142, PRK08142, thiolase domain-containing protein	NA|134aa|up_0|NC_011144.1_3679029_3679431_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|417aa|down_0|NC_011144.1_3679924_3681175_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|389aa|down_1|NC_011144.1_3681219_3682386_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|261aa|down_2|NC_011144.1_3682382_3683165_+	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|87aa|down_3|NC_011144.1_3683168_3683429_-	NA	NA|212aa|down_4|NC_011144.1_3683431_3684067_-	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	NA|324aa|down_5|NC_011144.1_3684063_3685035_-	pfam02685, Glucokinase, Glucokinase	NA|605aa|down_6|NC_011144.1_3685034_3686849_-	PRK09054, PRK09054, phosphogluconate dehydratase; Validated	NA|219aa|down_7|NC_011144.1_3686868_3687525_-	cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate	NA|471aa|down_8|NC_011144.1_3687561_3688974_-	PRK06247, PRK06247, pyruvate kinase; Provisional	NA|630aa|down_9|NC_011144.1_3689128_3691018_+	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
