assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000017285.1_ASM1728v1	NC_009654	Marinomonas sp. MWYL1, complete genome	1	703485-703592	1	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,DinG,RT,cas6f,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TTATTTATAAGTAATTTTTCTTAA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,DinG,RT,cas6f,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|323aa|up_9|NC_009654.1_692870_693839_+	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only]	NA|140aa|up_8|NC_009654.1_693840_694260_+	PRK05578, PRK05578, cytidine deaminase; Validated	NA|360aa|up_7|NC_009654.1_694311_695391_-	pfam05145, AbrB, Transition state regulatory protein AbrB	NA|128aa|up_6|NC_009654.1_695684_696068_+	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|811aa|up_5|NC_009654.1_696064_698497_-	TIGR02717, Uncharacterized_protein_MJ0590, acetyl coenzyme A synthetase (ADP forming), alpha domain	NA|308aa|up_4|NC_009654.1_698687_699611_+	cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII	NA|222aa|up_3|NC_009654.1_699627_700293_-	PRK10826, PRK10826, hexitol phosphatase HxpB	NA|435aa|up_2|NC_009654.1_700343_701648_-	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|171aa|up_1|NC_009654.1_701649_702162_-	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|327aa|up_0|NC_009654.1_702158_703139_-	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|342aa|down_0|NC_009654.1_703631_704657_+	cd13683, PBP2_TRAP_DctP6_7, Substrate-binding domain of Tripartite ATP-independent Periplasmic transporter DctP6 and DctP7; type 2 periplasmic-binding protein fold	NA|167aa|down_1|NC_009654.1_704724_705225_+	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|430aa|down_2|NC_009654.1_705221_706511_+	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|355aa|down_3|NC_009654.1_706522_707587_-	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|374aa|down_4|NC_009654.1_707781_708903_-	COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|297aa|down_5|NC_009654.1_708899_709790_-	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]	NA|287aa|down_6|NC_009654.1_709799_710660_-	PRK10971, PRK10971, sulfate/thiosulfate ABC transporter permease CysT	NA|338aa|down_7|NC_009654.1_710798_711812_-	COG4150, CysP, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|75aa|down_8|NC_009654.1_712236_712461_+	pfam04023, FeoA, FeoA domain	NA|694aa|down_9|NC_009654.1_712492_714574_+	PRK09554, feoB, Fe(2+) transporter permease subunit FeoB
GCF_000017285.1_ASM1728v1	NC_009654	Marinomonas sp. MWYL1, complete genome	2	864927-865384	1	CRT	no		WYL,DEDDh,cas3,csa3,DinG,RT,cas6f,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	AACCAAATCACATGTAGGTCGGCCTT	26	3	3	865005-865036|865168-865185|865212-865244	NC_009654.1_846575-846606|NC_009654.1_846627-846644|NC_009654.1_846685-846717	NA	8	8	Orphan	WYL,DEDDh,cas3,csa3,DinG,RT,cas6f,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|3324aa|up_4|NC_009654.1_848034_858006_+,NA	NA|250aa|up_9|NC_009654.1_843498_844248_+	PRK08993, PRK08993, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA|261aa|up_8|NC_009654.1_844481_845264_+	PRK15090, PRK15090, DNA-binding transcriptional regulator KdgR; Provisional	NA|107aa|up_7|NC_009654.1_845512_845833_+	cd02238, cupin_KdgF, pectin degradation protein KdgF and related proteins, cupin domain	NA|212aa|up_6|NC_009654.1_845881_846517_+	PRK09273, PRK09273, hypothetical protein; Provisional	NA|371aa|up_5|NC_009654.1_846773_847886_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|3324aa|up_4|NC_009654.1_848034_858006_+	NA	NA|710aa|up_3|NC_009654.1_858090_860220_+	pfam13469, Sulfotransfer_3, Sulfotransferase family	NA|468aa|up_2|NC_009654.1_860114_861518_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|723aa|up_1|NC_009654.1_861541_863710_+	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|404aa|up_0|NC_009654.1_863699_864911_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|151aa|down_0|NC_009654.1_865415_865868_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|738aa|down_1|NC_009654.1_866123_868337_-	pfam06082, YjbH, Exopolysaccharide biosynthesis protein YbjH	NA|264aa|down_2|NC_009654.1_868336_869128_-	pfam06251, Caps_synth_GfcC, Capsule biosynthesis GfcC	NA|235aa|down_3|NC_009654.1_869140_869845_-	pfam11102, YjbF, Group 4 capsule polysaccharide lipoprotein gfcB, YjbF	NA|130aa|down_4|NC_009654.1_869908_870298_-	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|445aa|down_5|NC_009654.1_870653_871988_+	pfam14052, Caps_assemb_Wzi, Capsule assembly protein Wzi	NA|858aa|down_6|NC_009654.1_872093_874667_+	TIGR03028, EpsE, polysaccharide export protein EpsE	NA|316aa|down_7|NC_009654.1_874843_875791_+	COG3206, GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]	NA|160aa|down_8|NC_009654.1_875889_876369_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|478aa|down_9|NC_009654.1_876935_878369_-	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
GCF_000017285.1_ASM1728v1	NC_009654	Marinomonas sp. MWYL1, complete genome	3	3034875-3037304	2,2,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas6f,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7	WYL,DEDDh,cas3,csa3,DinG,RT,cas6f,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type III-C,Type III-D,Type III-B,Type III-A	TTTCTAAGCCGCGTGCTCGGCGGCGAAC,TTTCTAAGCCGCGTGCTCGGCGGCGAAC,TAAATTTCTAAGCCGCGTGCTCGGCGGCGAAC,TTTCTAAGCCGCGTGCTCGGCGGCGAAC	28,28,32,28	0	0	NA	NA	NA:NA:NA:NA	40,40,37,37	40	TypeIII-C,TypeIII-D,TypeIII-B,TypeIII-A	WYL,DEDDh,cas3,csa3,DinG,RT,cas6f,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|615aa|up_5|NC_009654.1_3026051_3027896_+,NA|305aa|up_4|NC_009654.1_3028200_3029115_-,NA	NA|235aa|up_9|NC_009654.1_3022135_3022840_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|446aa|up_8|NC_009654.1_3022904_3024242_-	PRK09428, pssA, CDP-diacylglycerol--serine O-phosphatidyltransferase	NA|318aa|up_7|NC_009654.1_3024399_3025353_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|73aa|up_6|NC_009654.1_3025507_3025726_+	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown]	NA|615aa|up_5|NC_009654.1_3026051_3027896_+	NA	NA|305aa|up_4|NC_009654.1_3028200_3029115_-	NA	NA|302aa|up_3|NC_009654.1_3029760_3030666_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|306aa|up_2|NC_009654.1_3030821_3031739_+	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|332aa|up_1|NC_009654.1_3031829_3032825_+	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|633aa|up_0|NC_009654.1_3032870_3034769_+	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein	cas6f|200aa|down_0|NC_009654.1_3037433_3038033_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cmr6gr7|370aa|down_1|NC_009654.1_3038796_3039906_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	cmr5gr11|142aa|down_2|NC_009654.1_3039898_3040324_-	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5	cmr4gr7|284aa|down_3|NC_009654.1_3040320_3041172_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|389aa|down_4|NC_009654.1_3041186_3042353_-	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3)	cas10|613aa|down_5|NC_009654.1_3042349_3044188_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|408aa|down_6|NC_009654.1_3044190_3045414_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	NA|244aa|down_7|NC_009654.1_3045583_3046315_-	COG3680, COG3680, Uncharacterized protein conserved in bacteria [Function unknown]	NA|100aa|down_8|NC_009654.1_3046747_3047047_-	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|90aa|down_9|NC_009654.1_3047047_3047317_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system
GCF_000017285.1_ASM1728v1	NC_009654	Marinomonas sp. MWYL1, complete genome	4	3878644-3878726	3	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,DinG,RT,cas6f,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TCAGACATTGCAGCAGCCCATTC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,DinG,RT,cas6f,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|633aa|down_5|NC_009654.1_3884199_3886098_-,NA|626aa|down_6|NC_009654.1_3886118_3887996_-	NA|263aa|up_9|NC_009654.1_3869365_3870154_-	pfam04344, CheZ, Chemotaxis phosphatase, CheZ	NA|131aa|up_8|NC_009654.1_3870163_3870556_-	cd19923, REC_CheY_CheY3, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY family proteins	NA|246aa|up_7|NC_009654.1_3870598_3871336_-	PRK06986, fliA, flagellar biosynthesis sigma factor; Validated	NA|428aa|up_6|NC_009654.1_3871432_3872716_-	PRK05703, flhF, flagellar biosynthesis protein FlhF	NA|706aa|up_5|NC_009654.1_3872817_3874935_-	PRK06012, flhA, flagellar type III secretion system protein FlhA	NA|379aa|up_4|NC_009654.1_3874972_3876109_-	PRK05702, flhB, flagellar type III secretion system protein FlhB	NA|261aa|up_3|NC_009654.1_3876101_3876884_-	PRK05701, fliR, flagellar type III secretion system protein FliR	NA|90aa|up_2|NC_009654.1_3876883_3877153_-	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|246aa|up_1|NC_009654.1_3877155_3877893_-	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|128aa|up_0|NC_009654.1_3877889_3878273_-	COG3190, FliO, Flagellar biogenesis protein [Cell motility and secretion]	NA|325aa|down_0|NC_009654.1_3878781_3879756_-	PRK06666, fliM, flagellar motor switch protein FliM; Validated	NA|171aa|down_1|NC_009654.1_3879760_3880273_-	PRK05696, fliL, flagellar basal body-associated protein FliL; Reviewed	NA|568aa|down_2|NC_009654.1_3880390_3882094_-	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|573aa|down_3|NC_009654.1_3882141_3883860_-	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|101aa|down_4|NC_009654.1_3883866_3884169_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|633aa|down_5|NC_009654.1_3884199_3886098_-	NA	NA|626aa|down_6|NC_009654.1_3886118_3887996_-	NA	NA|145aa|down_7|NC_009654.1_3888047_3888482_-	pfam02050, FliJ, Flagellar FliJ protein	NA|444aa|down_8|NC_009654.1_3888535_3889867_-	TIGR03496, FliI_clade1, flagellar protein export ATPase FliI	NA|269aa|down_9|NC_009654.1_3889872_3890679_-	PRK05687, fliH, flagellar assembly protein FliH
GCF_000017285.1_ASM1728v1	NC_009654	Marinomonas sp. MWYL1, complete genome	5	3991376-3997996	4,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	WYL,DEDDh,cas3,csa3,DinG,RT,cas6f,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGTGTGCTCGGGGAACGC,CGGTTTATCCCCGTGTGCTCGGGGAACGC,CGGTTTATCCCCGTGTGCTCGGGGAACGC	29,29,29	0	0	NA	NA	NA:NA:NA	108,108,107	108	TypeI-E	WYL,DEDDh,cas3,csa3,DinG,RT,cas6f,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|293aa|up_9|NC_009654.1_3980288_3981167_+	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|279aa|up_8|NC_009654.1_3981253_3982090_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|322aa|up_7|NC_009654.1_3982196_3983162_-	PRK11618, PRK11618, inner membrane ABC transporter permease protein YjfF; Provisional	NA|353aa|up_6|NC_009654.1_3983161_3984220_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|473aa|up_5|NC_009654.1_3984282_3985701_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|309aa|up_4|NC_009654.1_3985938_3986865_-	cd06309, PBP1_galactofuranose_YtfQ-like, periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems	NA|316aa|up_3|NC_009654.1_3987165_3988113_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|307aa|up_2|NC_009654.1_3988266_3989187_-	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|233aa|up_1|NC_009654.1_3989320_3990019_+	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain	NA|275aa|up_0|NC_009654.1_3990138_3990963_-	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	cas2|97aa|down_0|NC_009654.1_3998078_3998369_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NC_009654.1_3998371_3999295_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	NA|275aa|down_2|NC_009654.1_3999294_4000119_-	pfam04383, KilA-N, KilA-N domain	cas6e|225aa|down_3|NC_009654.1_4000176_4000851_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|259aa|down_4|NC_009654.1_4000851_4001628_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|345aa|down_5|NC_009654.1_4001640_4002675_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|207aa|down_6|NC_009654.1_4002692_4003313_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|535aa|down_7|NC_009654.1_4003312_4004917_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|909aa|down_8|NC_009654.1_4005541_4008268_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	WYL|279aa|down_9|NC_009654.1_4009466_4010303_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]
