assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	1	142939-143027	1	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CCAGGACCCTTGAGCGCGCGGGCGCGCC	28	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|70aa|up_4|NC_009767.1_139331_139541_+,NA|51aa|down_4|NC_009767.1_149100_149253_+	NA|288aa|up_9|NC_009767.1_132881_133745_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|252aa|up_8|NC_009767.1_134043_134799_-	TIGR02865, Stage_II_sporulation_protein_E, stage II sporulation protein E	NA|456aa|up_7|NC_009767.1_135102_136470_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|300aa|up_6|NC_009767.1_136890_137790_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|304aa|up_5|NC_009767.1_138017_138929_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|70aa|up_4|NC_009767.1_139331_139541_+	NA	NA|454aa|up_3|NC_009767.1_139672_141034_+	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]	NA|255aa|up_2|NC_009767.1_141026_141791_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|206aa|up_1|NC_009767.1_141787_142405_+	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|116aa|up_0|NC_009767.1_142578_142926_+	pfam12905, Glyco_hydro_101, Endo-alpha-N-acetylgalactosaminidase	NA|455aa|down_0|NC_009767.1_143240_144605_+	TIGR00442, hisS, histidyl-tRNA synthetase	NA|213aa|down_1|NC_009767.1_144594_145233_+	pfam04961, FTCD_C, Formiminotransferase-cyclodeaminase	NA|317aa|down_2|NC_009767.1_145305_146256_+	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|770aa|down_3|NC_009767.1_146792_149102_-	cd01676, RNR_II_monomer, Class II ribonucleotide reductase, monomeric form	NA|51aa|down_4|NC_009767.1_149100_149253_+	NA	NA|855aa|down_5|NC_009767.1_149775_152340_+	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|372aa|down_6|NC_009767.1_153078_154194_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|241aa|down_7|NC_009767.1_154197_154920_-	cd03142, GATase1_ThuA, Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA)	NA|434aa|down_8|NC_009767.1_154991_156293_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|552aa|down_9|NC_009767.1_156491_158147_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	2	275871-275975	2	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CCCCCCTTCTCCCACAAGGGGCGAAGGGGG	30	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|461aa|up_4|NC_009767.1_263359_264742_+,NA|106aa|up_3|NC_009767.1_264775_265093_+,NA|183aa|down_3|NC_009767.1_279032_279581_+	NA|574aa|up_9|NC_009767.1_256813_258535_-	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase	NA|311aa|up_8|NC_009767.1_258893_259826_+	TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family	NA|324aa|up_7|NC_009767.1_260052_261024_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|228aa|up_6|NC_009767.1_261026_261710_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|419aa|up_5|NC_009767.1_261990_263247_+	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|461aa|up_4|NC_009767.1_263359_264742_+	NA	NA|106aa|up_3|NC_009767.1_264775_265093_+	NA	NA|2263aa|up_2|NC_009767.1_265159_271948_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|865aa|up_1|NC_009767.1_272114_274709_+	sd00006, TPR, Tetratricopeptide repeat	NA|205aa|up_0|NC_009767.1_274987_275602_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|481aa|down_0|NC_009767.1_276016_277459_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|157aa|down_1|NC_009767.1_277461_277932_-	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|274aa|down_2|NC_009767.1_278214_279036_+	COG1409, Icc, Predicted phosphohydrolases [General function prediction only]	NA|183aa|down_3|NC_009767.1_279032_279581_+	NA	NA|513aa|down_4|NC_009767.1_279587_281126_+	cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins	NA|164aa|down_5|NC_009767.1_281851_282343_-	pfam14376, Haem_bd, Haem-binding domain	NA|292aa|down_6|NC_009767.1_282537_283413_-	COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism]	NA|318aa|down_7|NC_009767.1_283405_284359_-	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|140aa|down_8|NC_009767.1_284370_284790_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|275aa|down_9|NC_009767.1_285007_285832_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	3	288077-288192	3	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GACCGTCGCTGCCAATGACCTGTGACCATCCGGCATGGTCAC	42	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|183aa|up_7|NC_009767.1_279032_279581_+,NA|379aa|down_3|NC_009767.1_291519_292656_-	NA|157aa|up_9|NC_009767.1_277461_277932_-	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|274aa|up_8|NC_009767.1_278214_279036_+	COG1409, Icc, Predicted phosphohydrolases [General function prediction only]	NA|183aa|up_7|NC_009767.1_279032_279581_+	NA	NA|513aa|up_6|NC_009767.1_279587_281126_+	cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins	NA|164aa|up_5|NC_009767.1_281851_282343_-	pfam14376, Haem_bd, Haem-binding domain	NA|292aa|up_4|NC_009767.1_282537_283413_-	COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism]	NA|318aa|up_3|NC_009767.1_283405_284359_-	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|140aa|up_2|NC_009767.1_284370_284790_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|275aa|up_1|NC_009767.1_285007_285832_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|228aa|up_0|NC_009767.1_285997_286681_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|144aa|down_0|NC_009767.1_288297_288729_-	pfam00520, Ion_trans, Ion transport protein	NA|353aa|down_1|NC_009767.1_288728_289787_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|364aa|down_2|NC_009767.1_290306_291398_+	pfam05544, Pro_racemase, Proline racemase	NA|379aa|down_3|NC_009767.1_291519_292656_-	NA	NA|428aa|down_4|NC_009767.1_292655_293939_-	cd02874, GH18_CFLE_spore_hydrolase, Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in  bacterial endospore germination	NA|122aa|down_5|NC_009767.1_293966_294332_-	cd12952, MMP_ACEL2062, Minimal MMP-like domain found in Acidothermus cellulolyticus hypothetical protein ACEL2062 and similar protein	NA|198aa|down_6|NC_009767.1_294459_295053_-	TIGR02952, RNA_polymerase_sigma-70_factor_ECF_subfamily, RNA polymerase sigma-70 factor, TIGR02952 family	NA|219aa|down_7|NC_009767.1_295731_296388_+	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|94aa|down_8|NC_009767.1_296384_296666_+	PRK14444, PRK14444, acylphosphatase; Provisional	NA|275aa|down_9|NC_009767.1_296655_297480_-	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	4	338176-338286	4	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CCAGCATGAGGCGTTGATCGGTAATCATCACTGCGGC	37	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|279aa|up_9|NC_009767.1_322194_323031_+,NA|147aa|down_2|NC_009767.1_342151_342592_+,NA|532aa|down_3|NC_009767.1_342588_344184_+,NA|209aa|down_6|NC_009767.1_345632_346259_+	NA|279aa|up_9|NC_009767.1_322194_323031_+	NA	NA|525aa|up_8|NC_009767.1_324617_326192_-	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional	NA|793aa|up_7|NC_009767.1_326967_329346_-	COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]	NA|670aa|up_6|NC_009767.1_330057_332067_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|415aa|up_5|NC_009767.1_332391_333636_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|278aa|up_4|NC_009767.1_333642_334476_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|588aa|up_3|NC_009767.1_334541_336305_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|208aa|up_2|NC_009767.1_336393_337017_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|69aa|up_1|NC_009767.1_337613_337820_-	pfam10049, DUF2283, Protein of unknown function (DUF2283)	NA|95aa|up_0|NC_009767.1_337816_338101_-	pfam14076, DUF4258, Domain of unknown function (DUF4258)	NA|518aa|down_0|NC_009767.1_338404_339958_-	pfam00171, Aldedh, Aldehyde dehydrogenase family	NA|440aa|down_1|NC_009767.1_340471_341791_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|147aa|down_2|NC_009767.1_342151_342592_+	NA	NA|532aa|down_3|NC_009767.1_342588_344184_+	NA	NA|104aa|down_4|NC_009767.1_344711_345023_-	pfam08822, DUF1804, Protein of unknown function (DUF1804)	NA|111aa|down_5|NC_009767.1_345121_345454_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|209aa|down_6|NC_009767.1_345632_346259_+	NA	NA|122aa|down_7|NC_009767.1_346409_346775_+	TIGR02890, conserved_hypothetical_protein, regulatory protein, yteA family	NA|192aa|down_8|NC_009767.1_347332_347908_+	PRK14790, PRK14790, lipoprotein signal peptidase; Provisional	NA|315aa|down_9|NC_009767.1_348143_349088_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	5	344336-344447	5	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GCGCTCATCGTCGGCAACATATTCGAGCCAATGGGAG	37	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|147aa|up_1|NC_009767.1_342151_342592_+,NA|532aa|up_0|NC_009767.1_342588_344184_+,NA|209aa|down_2|NC_009767.1_345632_346259_+	NA|415aa|up_9|NC_009767.1_332391_333636_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|278aa|up_8|NC_009767.1_333642_334476_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|588aa|up_7|NC_009767.1_334541_336305_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|208aa|up_6|NC_009767.1_336393_337017_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|69aa|up_5|NC_009767.1_337613_337820_-	pfam10049, DUF2283, Protein of unknown function (DUF2283)	NA|95aa|up_4|NC_009767.1_337816_338101_-	pfam14076, DUF4258, Domain of unknown function (DUF4258)	NA|518aa|up_3|NC_009767.1_338404_339958_-	pfam00171, Aldedh, Aldehyde dehydrogenase family	NA|440aa|up_2|NC_009767.1_340471_341791_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|147aa|up_1|NC_009767.1_342151_342592_+	NA	NA|532aa|up_0|NC_009767.1_342588_344184_+	NA	NA|104aa|down_0|NC_009767.1_344711_345023_-	pfam08822, DUF1804, Protein of unknown function (DUF1804)	NA|111aa|down_1|NC_009767.1_345121_345454_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|209aa|down_2|NC_009767.1_345632_346259_+	NA	NA|122aa|down_3|NC_009767.1_346409_346775_+	TIGR02890, conserved_hypothetical_protein, regulatory protein, yteA family	NA|192aa|down_4|NC_009767.1_347332_347908_+	PRK14790, PRK14790, lipoprotein signal peptidase; Provisional	NA|315aa|down_5|NC_009767.1_348143_349088_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|310aa|down_6|NC_009767.1_349704_350634_+	PRK06223, PRK06223, malate dehydrogenase; Reviewed	NA|592aa|down_7|NC_009767.1_350980_352756_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|303aa|down_8|NC_009767.1_352752_353661_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|226aa|down_9|NC_009767.1_354091_354769_-	cd02588, HAD_L2-DEX, L-2-haloacid dehalogenase
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	6	364358-364436	6	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CAACGACATCAACGTTGCCGGGCTT	25	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|283aa|down_2|NC_009767.1_368691_369540_+	NA|310aa|up_9|NC_009767.1_349704_350634_+	PRK06223, PRK06223, malate dehydrogenase; Reviewed	NA|592aa|up_8|NC_009767.1_350980_352756_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|303aa|up_7|NC_009767.1_352752_353661_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|226aa|up_6|NC_009767.1_354091_354769_-	cd02588, HAD_L2-DEX, L-2-haloacid dehalogenase	NA|461aa|up_5|NC_009767.1_354790_356173_-	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain	NA|274aa|up_4|NC_009767.1_357044_357866_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|142aa|up_3|NC_009767.1_358609_359035_+	pfam11255, DUF3054, Protein of unknown function (DUF3054)	NA|221aa|up_2|NC_009767.1_359130_359793_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|206aa|up_1|NC_009767.1_359845_360463_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|833aa|up_0|NC_009767.1_360542_363041_+	TIGR03663, TIGR03663, TIGR03663 family protein	NA|72aa|down_0|NC_009767.1_366767_366983_-	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|489aa|down_1|NC_009767.1_367212_368679_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|283aa|down_2|NC_009767.1_368691_369540_+	NA	NA|271aa|down_3|NC_009767.1_369540_370353_+	pfam10086, DUF2324, Putative membrane peptidase family (DUF2324)	NA|332aa|down_4|NC_009767.1_371029_372025_-	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	NA|394aa|down_5|NC_009767.1_372293_373475_+	TIGR04350, aminotransferase_class_I_and_II, putative C-S lyase	NA|281aa|down_6|NC_009767.1_375201_376044_+	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase	NA|226aa|down_7|NC_009767.1_376113_376791_+	pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I	NA|233aa|down_8|NC_009767.1_377363_378062_+	PRK07454, PRK07454, SDR family oxidoreductase	NA|210aa|down_9|NC_009767.1_379068_379698_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	7	403841-403947	7	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	ACCTACAACGAGATGCCGTTACAGAAATAACCGTCAC	37	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|205aa|up_2|NC_009767.1_400641_401256_-,NA|493aa|down_9|NC_009767.1_423168_424647_+	NA|159aa|up_9|NC_009767.1_390241_390718_+	cd08070, MPN_like, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding)	NA|94aa|up_8|NC_009767.1_390935_391217_+	cd17074, Ubl_CysO_like, ubiquitin-like (Ubl) domain found in Mycobacterium tuberculosis CysO and similar proteins	NA|384aa|up_7|NC_009767.1_391240_392392_+	PRK07411, PRK07411, molybdopterin-synthase adenylyltransferase MoeB	NA|70aa|up_6|NC_009767.1_392462_392672_+	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|557aa|up_5|NC_009767.1_392796_394467_+	cd08513, PBP2_thermophilic_Hb8_like, The substrate-binding component of ABC-type thermophilic oligopeptide-binding protein Hb8-like import systems, contains the type 2 periplasmic binding fold	NA|289aa|up_4|NC_009767.1_394719_395586_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|1080aa|up_3|NC_009767.1_396027_399267_+	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|205aa|up_2|NC_009767.1_400641_401256_-	NA	NA|106aa|up_1|NC_009767.1_401567_401885_-	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|294aa|up_0|NC_009767.1_402272_403154_+	TIGR04474, conserved_hypothetical_protein, three-Cys-motif partner protein	NA|244aa|down_0|NC_009767.1_406537_407269_-	COG1768, COG1768, Predicted phosphohydrolase [General function prediction only]	NA|239aa|down_1|NC_009767.1_407297_408014_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|173aa|down_2|NC_009767.1_409768_410287_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|279aa|down_3|NC_009767.1_410673_411510_-	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase	NA|279aa|down_4|NC_009767.1_411516_412353_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|123aa|down_5|NC_009767.1_412428_412797_-	COG2018, COG2018, Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]	NA|337aa|down_6|NC_009767.1_416184_417195_-	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|1194aa|down_7|NC_009767.1_417184_420766_-	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|612aa|down_8|NC_009767.1_421179_423015_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|493aa|down_9|NC_009767.1_423168_424647_+	NA
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	8	508413-508516	8	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CCGTCAGGCGTTTTCTTCTCAAGCATTCAAAG	32	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|104aa|down_0|NC_009767.1_508773_509085_-,NA|269aa|down_2|NC_009767.1_509930_510737_+,NA|204aa|down_3|NC_009767.1_510745_511357_+,NA|241aa|down_4|NC_009767.1_511313_512036_+,NA|80aa|down_6|NC_009767.1_513692_513932_-	NA|526aa|up_9|NC_009767.1_491133_492711_-	COG3835, CdaR, Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms]	NA|456aa|up_8|NC_009767.1_492778_494146_-	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase	NA|318aa|up_7|NC_009767.1_494482_495436_+	cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail	NA|736aa|up_6|NC_009767.1_495458_497666_+	cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in archaeal and bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)	NA|429aa|up_5|NC_009767.1_498302_499589_-	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase	NA|253aa|up_4|NC_009767.1_499808_500567_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|224aa|up_3|NC_009767.1_500681_501353_+	pfam18029, Glyoxalase_6, Glyoxalase-like domain	NA|1029aa|up_2|NC_009767.1_501586_504673_+	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|121aa|up_1|NC_009767.1_504698_505061_+	TIGR02436, S23_ribosomal_protein, four helix bundle protein	NA|1105aa|up_0|NC_009767.1_505057_508372_+	pfam04851, ResIII, Type III restriction enzyme, res subunit	NA|104aa|down_0|NC_009767.1_508773_509085_-	NA	NA|158aa|down_1|NC_009767.1_509395_509869_+	TIGR02246, hypothetical_protein, conserved hypothetical protein	NA|269aa|down_2|NC_009767.1_509930_510737_+	NA	NA|204aa|down_3|NC_009767.1_510745_511357_+	NA	NA|241aa|down_4|NC_009767.1_511313_512036_+	NA	NA|384aa|down_5|NC_009767.1_512029_513181_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|80aa|down_6|NC_009767.1_513692_513932_-	NA	NA|477aa|down_7|NC_009767.1_514607_516038_+	COG0863, COG0863, DNA modification methylase [DNA replication, recombination, and repair]	NA|321aa|down_8|NC_009767.1_516037_517000_+	pfam09194, Endonuc-BsobI, Restriction endonuclease BsobI	NA|84aa|down_9|NC_009767.1_517803_518055_+	pfam03683, UPF0175, Uncharacterized protein family (UPF0175)
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	9	567479-567590	9	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GCGGAAGATGCGCCGCCAGATCGCACCCGACCTCAGCGCA	40	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|97aa|up_3|NC_009767.1_562111_562402_-,NA|672aa|down_2|NC_009767.1_570942_572958_+	NA|341aa|up_9|NC_009767.1_553087_554110_+	pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family	NA|706aa|up_8|NC_009767.1_554102_556220_+	pfam09594, GT87, Glycosyltransferase family 87	NA|145aa|up_7|NC_009767.1_556163_556598_-	pfam07366, SnoaL, SnoaL-like polyketide cyclase	NA|726aa|up_6|NC_009767.1_557443_559621_+	COG3408, GDB1, Glycogen debranching enzyme [Carbohydrate transport and metabolism]	NA|282aa|up_5|NC_009767.1_559624_560470_-	TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family	NA|431aa|up_4|NC_009767.1_560814_562107_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|97aa|up_3|NC_009767.1_562111_562402_-	NA	NA|317aa|up_2|NC_009767.1_562600_563551_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|348aa|up_1|NC_009767.1_563777_564821_+	COG2605, COG2605, Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]	NA|208aa|up_0|NC_009767.1_564907_565531_+	cd07503, HAD_HisB-N, histidinol phosphate phosphatase and related phosphatases	NA|241aa|down_0|NC_009767.1_567681_568404_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|415aa|down_1|NC_009767.1_569441_570686_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|672aa|down_2|NC_009767.1_570942_572958_+	NA	NA|829aa|down_3|NC_009767.1_573768_576255_+	COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism]	NA|577aa|down_4|NC_009767.1_576687_578418_+	TIGR03471, HpnJ, hopanoid biosynthesis associated radical SAM protein HpnJ	NA|390aa|down_5|NC_009767.1_579058_580228_+	COG3503, COG3503, Predicted membrane protein [Function unknown]	NA|395aa|down_6|NC_009767.1_580485_581670_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|489aa|down_7|NC_009767.1_581843_583310_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|448aa|down_8|NC_009767.1_583326_584670_+	cd03823, GT4_ExpE7-like, glycosyltransferase ExpE7 and similar proteins	NA|301aa|down_9|NC_009767.1_584980_585883_+	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	10	665171-665301	10	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GAGACGCCAACGGCCACATCGACGCCAACCGACACGCCGGTTCCGCCAAC	50	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|596aa|up_8|NC_009767.1_648415_650203_+,NA	NA|489aa|up_9|NC_009767.1_646128_647595_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|596aa|up_8|NC_009767.1_648415_650203_+	NA	NA|356aa|up_7|NC_009767.1_650202_651270_+	COG1580, FliL, Flagellar basal body-associated protein [Cell motility and secretion]	NA|119aa|up_6|NC_009767.1_651175_651532_-	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily	NA|133aa|up_5|NC_009767.1_652885_653284_-	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|366aa|up_4|NC_009767.1_653562_654660_+	TIGR04039, MXAN_0977_Heme2, di-heme enzyme, MXAN_0977 family	NA|942aa|up_3|NC_009767.1_654679_657505_+	pfam17210, SdrD_B, SdrD B-like domain	NA|206aa|up_2|NC_009767.1_658347_658965_+	pfam01832, Glucosaminidase, Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA|907aa|up_1|NC_009767.1_659119_661840_-	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|635aa|up_0|NC_009767.1_661980_663885_+	COG5542, COG5542, Predicted integral membrane protein [Function unknown]	NA|105aa|down_0|NC_009767.1_666030_666345_+	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|337aa|down_1|NC_009767.1_666494_667505_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|423aa|down_2|NC_009767.1_667639_668908_+	TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL	NA|336aa|down_3|NC_009767.1_668972_669980_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|303aa|down_4|NC_009767.1_670019_670928_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|489aa|down_5|NC_009767.1_671224_672691_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|837aa|down_6|NC_009767.1_672822_675333_+	COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism]	NA|347aa|down_7|NC_009767.1_675366_676407_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|620aa|down_8|NC_009767.1_676417_678277_+	cd06565, GH20_GcnA-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins	NA|417aa|down_9|NC_009767.1_678273_679524_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	11	681123-681456	1,11	PILER-CR,CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	TCCCTCCCCCCTGCGTGCGGGGGGTTCTGGGATGCAGGGCTGTACAC,CCCCTGCCCCCTCGCGTGCGGGGGTTCTG	47,29	1	1	681336-681366	NC_009767.1_681456-681486	NA:NA	2,4	4	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|178aa|down_7|NC_009767.1_692994_693528_+	NA|337aa|up_9|NC_009767.1_666494_667505_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|423aa|up_8|NC_009767.1_667639_668908_+	TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL	NA|336aa|up_7|NC_009767.1_668972_669980_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|303aa|up_6|NC_009767.1_670019_670928_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|489aa|up_5|NC_009767.1_671224_672691_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|837aa|up_4|NC_009767.1_672822_675333_+	COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism]	NA|347aa|up_3|NC_009767.1_675366_676407_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|620aa|up_2|NC_009767.1_676417_678277_+	cd06565, GH20_GcnA-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins	NA|417aa|up_1|NC_009767.1_678273_679524_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|452aa|up_0|NC_009767.1_679580_680936_+	TIGR03356, BGL, beta-galactosidase	NA|565aa|down_0|NC_009767.1_681743_683438_-	pfam01268, FTHFS, Formate--tetrahydrofolate ligase	NA|245aa|down_1|NC_009767.1_683552_684287_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|323aa|down_2|NC_009767.1_684594_685563_-	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|881aa|down_3|NC_009767.1_685592_688235_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|393aa|down_4|NC_009767.1_688454_689633_+	cd17335, MFS_MFSD6, Major facilitator superfamily domain-containing protein 6	NA|689aa|down_5|NC_009767.1_689668_691735_-	cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins	NA|312aa|down_6|NC_009767.1_691873_692809_+	TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase	NA|178aa|down_7|NC_009767.1_692994_693528_+	NA	NA|626aa|down_8|NC_009767.1_693781_695659_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|940aa|down_9|NC_009767.1_695659_698479_-	TIGR03662, Chlor_Arch_YYY, Chlor_Arch_YYY domain
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	12	708257-708503	1	CRT	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CCCGACCAAGGCGTAGCGCGAGATGTATCTCGCATT	36	3	5	708293-708326|708293-708326|708363-708397|708434-708467|708434-708467	NC_009767.1_707803-707836|NC_009767.1_708027-708060|NC_009767.1_707873-707907|NC_009767.1_707803-707836|NC_009767.1_708027-708060	NA	3	3	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|178aa|up_3|NC_009767.1_692994_693528_+,NA|69aa|down_3|NC_009767.1_715271_715478_+,NA|109aa|down_6|NC_009767.1_717033_717360_-,NA|77aa|down_7|NC_009767.1_717514_717745_+,NA|49aa|down_8|NC_009767.1_717896_718043_-	NA|245aa|up_9|NC_009767.1_683552_684287_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|323aa|up_8|NC_009767.1_684594_685563_-	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|881aa|up_7|NC_009767.1_685592_688235_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|393aa|up_6|NC_009767.1_688454_689633_+	cd17335, MFS_MFSD6, Major facilitator superfamily domain-containing protein 6	NA|689aa|up_5|NC_009767.1_689668_691735_-	cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins	NA|312aa|up_4|NC_009767.1_691873_692809_+	TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase	NA|178aa|up_3|NC_009767.1_692994_693528_+	NA	NA|626aa|up_2|NC_009767.1_693781_695659_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|940aa|up_1|NC_009767.1_695659_698479_-	TIGR03662, Chlor_Arch_YYY, Chlor_Arch_YYY domain	NA|2680aa|up_0|NC_009767.1_699418_707458_-	TIGR03662, Chlor_Arch_YYY, Chlor_Arch_YYY domain	NA|422aa|down_0|NC_009767.1_708953_710219_-	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|438aa|down_1|NC_009767.1_711742_713056_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|223aa|down_2|NC_009767.1_714141_714810_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|69aa|down_3|NC_009767.1_715271_715478_+	NA	NA|116aa|down_4|NC_009767.1_715631_715979_-	pfam18480, DUF5615, Domain of unknown function (DUF5615)	NA|82aa|down_5|NC_009767.1_715979_716225_-	pfam04255, DUF433, Protein of unknown function (DUF433)	NA|109aa|down_6|NC_009767.1_717033_717360_-	NA	NA|77aa|down_7|NC_009767.1_717514_717745_+	NA	NA|49aa|down_8|NC_009767.1_717896_718043_-	NA	NA|407aa|down_9|NC_009767.1_718771_719992_-	cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK)
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	13	749509-749613	12	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	AGTAGCGATGCCGTCACTCAGGAGTAAGCGTT	32	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|163aa|up_2|NC_009767.1_743222_743711_-,NA|193aa|down_1|NC_009767.1_751899_752478_-,NA|99aa|down_3|NC_009767.1_753333_753630_-	NA|373aa|up_9|NC_009767.1_730692_731811_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|456aa|up_8|NC_009767.1_731980_733348_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|441aa|up_7|NC_009767.1_733325_734648_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|214aa|up_6|NC_009767.1_734828_735470_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|350aa|up_5|NC_009767.1_735510_736560_-	cd06820, PLPDE_III_LS_D-TA_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like	NA|1598aa|up_4|NC_009767.1_737239_742033_+	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily	NA|273aa|up_3|NC_009767.1_742404_743223_-	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|163aa|up_2|NC_009767.1_743222_743711_-	NA	NA|397aa|up_1|NC_009767.1_743734_744925_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|508aa|up_0|NC_009767.1_745046_746570_+	cd05941, MCS, Malonyl-CoA synthetase (MCS)	NA|615aa|down_0|NC_009767.1_749870_751715_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|193aa|down_1|NC_009767.1_751899_752478_-	NA	NA|203aa|down_2|NC_009767.1_752885_753494_+	TIGR02249, Integrase/recombinase_E2_protein	NA|99aa|down_3|NC_009767.1_753333_753630_-	NA	NA|373aa|down_4|NC_009767.1_753635_754754_-	pfam01145, Band_7, SPFH domain / Band 7 family	NA|527aa|down_5|NC_009767.1_755360_756941_+	PRK08168, PRK08168, NADH-quinone oxidoreductase subunit L	NA|839aa|down_6|NC_009767.1_756985_759502_+	pfam10070, DUF2309, Uncharacterized protein conserved in bacteria (DUF2309)	NA|124aa|down_7|NC_009767.1_760028_760400_+	pfam02635, DrsE, DsrE/DsrF-like family	NA|459aa|down_8|NC_009767.1_760633_762010_+	pfam00486, Trans_reg_C, Transcriptional regulatory protein, C terminal	NA|336aa|down_9|NC_009767.1_762151_763159_+	pfam05982, Sbt_1, Na+-dependent bicarbonate transporter superfamily
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	14	779040-779141	13	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GCGTCGCAGGACACACCGATGTTGTGTTAT	30	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|82aa|up_2|NC_009767.1_776577_776823_-,NA|206aa|up_0|NC_009767.1_778206_778824_+,NA|113aa|down_6|NC_009767.1_787496_787835_+	NA|132aa|up_9|NC_009767.1_767418_767814_-	pfam05168, HEPN, HEPN domain	NA|122aa|up_8|NC_009767.1_767800_768166_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|521aa|up_7|NC_009767.1_768277_769840_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|444aa|up_6|NC_009767.1_769849_771181_+	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW	NA|579aa|up_5|NC_009767.1_771520_773257_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|320aa|up_4|NC_009767.1_773253_774213_+	sd00006, TPR, Tetratricopeptide repeat	NA|429aa|up_3|NC_009767.1_774412_775699_-	cd06116, CaCS_like, Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like	NA|82aa|up_2|NC_009767.1_776577_776823_-	NA	NA|380aa|up_1|NC_009767.1_777058_778198_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|206aa|up_0|NC_009767.1_778206_778824_+	NA	NA|215aa|down_0|NC_009767.1_779286_779931_-	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|273aa|down_1|NC_009767.1_779957_780776_-	COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|420aa|down_2|NC_009767.1_780775_782035_-	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]	NA|320aa|down_3|NC_009767.1_782031_782991_-	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]	NA|670aa|down_4|NC_009767.1_783214_785224_-	cd13654, PBP2_phosphate_like_2, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|550aa|down_5|NC_009767.1_785536_787186_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|113aa|down_6|NC_009767.1_787496_787835_+	NA	NA|517aa|down_7|NC_009767.1_787964_789515_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|268aa|down_8|NC_009767.1_789483_790287_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|314aa|down_9|NC_009767.1_790348_791290_+	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	15	814464-814573	14	CRISPRCasFinder	no	cas3	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Unclear	GGCGGTGCGCTGAGCCGGTCGAAGCG	26	0	0	NA	NA	NA	1	1	Unclear	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|326aa|up_4|NC_009767.1_808533_809511_+,NA|83aa|up_2|NC_009767.1_810993_811242_-,NA|66aa|down_0|NC_009767.1_814743_814941_+,NA|66aa|down_6|NC_009767.1_818331_818529_+	NA|517aa|up_9|NC_009767.1_804143_805694_-	TIGR03599, YloV, DAK2 domain fusion protein YloV	NA|128aa|up_8|NC_009767.1_805693_806077_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|69aa|up_7|NC_009767.1_806154_806361_+	pfam00830, Ribosomal_L28, Ribosomal L28 family	NA|272aa|up_6|NC_009767.1_806452_807268_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|346aa|up_5|NC_009767.1_807242_808280_-	cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains	NA|326aa|up_4|NC_009767.1_808533_809511_+	NA	NA|477aa|up_3|NC_009767.1_809529_810960_-	cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like	NA|83aa|up_2|NC_009767.1_810993_811242_-	NA	NA|330aa|up_1|NC_009767.1_811646_812636_+	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|403aa|up_0|NC_009767.1_812732_813941_-	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	NA|66aa|down_0|NC_009767.1_814743_814941_+	NA	NA|230aa|down_1|NC_009767.1_815091_815781_-	TIGR02249, Integrase/recombinase_E2_protein	NA|71aa|down_2|NC_009767.1_816050_816263_+	pfam10047, DUF2281, Protein of unknown function (DUF2281)	NA|116aa|down_3|NC_009767.1_816259_816607_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|196aa|down_4|NC_009767.1_816737_817325_+	pfam14338, Mrr_N, Mrr N-terminal domain	NA|158aa|down_5|NC_009767.1_817590_818064_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|66aa|down_6|NC_009767.1_818331_818529_+	NA	NA|314aa|down_7|NC_009767.1_818776_819718_+	pfam00892, EamA, EamA-like transporter family	NA|378aa|down_8|NC_009767.1_819772_820906_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|327aa|down_9|NC_009767.1_820923_821904_-	cd00687, Terpene_cyclase_nonplant_C1, Non-plant Terpene Cyclases, Class 1
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	16	818052-818161	15	CRISPRCasFinder	no	cas3	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Unclear	GGCGGTGCGCTGAGCCGGTCGAAGCG	26	0	0	NA	NA	NA	1	1	Unclear	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|83aa|up_8|NC_009767.1_810993_811242_-,NA|66aa|up_4|NC_009767.1_814743_814941_+,NA|66aa|down_0|NC_009767.1_818331_818529_+	NA|477aa|up_9|NC_009767.1_809529_810960_-	cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like	NA|83aa|up_8|NC_009767.1_810993_811242_-	NA	NA|330aa|up_7|NC_009767.1_811646_812636_+	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|403aa|up_6|NC_009767.1_812732_813941_-	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	NA|158aa|up_5|NC_009767.1_814002_814476_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|66aa|up_4|NC_009767.1_814743_814941_+	NA	NA|230aa|up_3|NC_009767.1_815091_815781_-	TIGR02249, Integrase/recombinase_E2_protein	NA|71aa|up_2|NC_009767.1_816050_816263_+	pfam10047, DUF2281, Protein of unknown function (DUF2281)	NA|116aa|up_1|NC_009767.1_816259_816607_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|196aa|up_0|NC_009767.1_816737_817325_+	pfam14338, Mrr_N, Mrr N-terminal domain	NA|66aa|down_0|NC_009767.1_818331_818529_+	NA	NA|314aa|down_1|NC_009767.1_818776_819718_+	pfam00892, EamA, EamA-like transporter family	NA|378aa|down_2|NC_009767.1_819772_820906_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|327aa|down_3|NC_009767.1_820923_821904_-	cd00687, Terpene_cyclase_nonplant_C1, Non-plant Terpene Cyclases, Class 1	NA|279aa|down_4|NC_009767.1_821931_822768_-	PLN02244, PLN02244, tocopherol O-methyltransferase	NA|371aa|down_5|NC_009767.1_822992_824105_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|449aa|down_6|NC_009767.1_824388_825735_-	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|332aa|down_7|NC_009767.1_825731_826727_-	cd03465, URO-D_like, The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases	NA|291aa|down_8|NC_009767.1_827453_828326_+	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase	NA|169aa|down_9|NC_009767.1_828864_829371_-	COG2405, COG2405, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	17	951630-951738	16	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GTGACCATGCCGGATGGTCACAGGTCATTGGTATAA	36	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA	NA|639aa|up_9|NC_009767.1_939957_941874_+	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|256aa|up_8|NC_009767.1_941998_942766_+	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|169aa|up_7|NC_009767.1_942769_943276_+	PRK00039, ruvC, Holliday junction resolvase; Reviewed	NA|226aa|up_6|NC_009767.1_943301_943979_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|93aa|up_5|NC_009767.1_943985_944264_+	COG0011, COG0011, Uncharacterized conserved protein [Function unknown]	NA|216aa|up_4|NC_009767.1_946184_946832_+	COG0456, RimI, Acetyltransferases [General function prediction only]	NA|422aa|up_3|NC_009767.1_946885_948151_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|329aa|up_2|NC_009767.1_948193_949180_-	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein	NA|317aa|up_1|NC_009767.1_949163_950114_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|395aa|up_0|NC_009767.1_950127_951312_-	COG1470, COG1470, Predicted membrane protein [Function unknown]	NA|134aa|down_0|NC_009767.1_951974_952376_+	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs)	NA|192aa|down_1|NC_009767.1_952380_952956_-	pfam09335, VTT, VMP1, TMEM41, and TVP38 (VTT) domain	NA|259aa|down_2|NC_009767.1_952987_953764_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|202aa|down_3|NC_009767.1_953820_954426_-	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|813aa|down_4|NC_009767.1_954521_956960_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|486aa|down_5|NC_009767.1_957450_958908_+	TIGR00947, 2A73, putative bicarbonate transporter, IctB family	NA|360aa|down_6|NC_009767.1_959305_960385_-	PLN02721, PLN02721, threonine aldolase	NA|289aa|down_7|NC_009767.1_961277_962144_+	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]	NA|355aa|down_8|NC_009767.1_962720_963785_+	COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]	NA|313aa|down_9|NC_009767.1_963790_964729_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	18	962441-962556	17	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	TTCCCTTTGCACTCTCTTGCCTCTCGTCTCTTACCTCGCACC	42	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|486aa|down_9|NC_009767.1_975245_976703_+	NA|317aa|up_9|NC_009767.1_949163_950114_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|395aa|up_8|NC_009767.1_950127_951312_-	COG1470, COG1470, Predicted membrane protein [Function unknown]	NA|134aa|up_7|NC_009767.1_951974_952376_+	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs)	NA|192aa|up_6|NC_009767.1_952380_952956_-	pfam09335, VTT, VMP1, TMEM41, and TVP38 (VTT) domain	NA|259aa|up_5|NC_009767.1_952987_953764_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|202aa|up_4|NC_009767.1_953820_954426_-	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|813aa|up_3|NC_009767.1_954521_956960_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|486aa|up_2|NC_009767.1_957450_958908_+	TIGR00947, 2A73, putative bicarbonate transporter, IctB family	NA|360aa|up_1|NC_009767.1_959305_960385_-	PLN02721, PLN02721, threonine aldolase	NA|289aa|up_0|NC_009767.1_961277_962144_+	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]	NA|355aa|down_0|NC_009767.1_962720_963785_+	COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]	NA|313aa|down_1|NC_009767.1_963790_964729_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|436aa|down_2|NC_009767.1_964762_966070_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|138aa|down_3|NC_009767.1_966062_966476_+	TIGR01354, Cytidine_deaminase, cytidine deaminase, homotetrameric	NA|833aa|down_4|NC_009767.1_966820_969319_-	cd05805, MPG1_transferase, GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity	NA|130aa|down_5|NC_009767.1_969579_969969_-	TIGR01837, to_the_polyhydroxyalkanoate_inclusion, poly(hydroxyalkanoate) granule-associated protein	NA|315aa|down_6|NC_009767.1_970253_971198_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|681aa|down_7|NC_009767.1_971720_973763_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|409aa|down_8|NC_009767.1_973899_975126_+	PRK11646, PRK11646, multidrug efflux MFS transporter MdtH	NA|486aa|down_9|NC_009767.1_975245_976703_+	NA
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	19	966663-966764	18	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	AACCCCTCTTGCCCCAAGCCTCGTGCCTC	29	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|486aa|down_5|NC_009767.1_975245_976703_+	NA|259aa|up_9|NC_009767.1_952987_953764_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|202aa|up_8|NC_009767.1_953820_954426_-	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|813aa|up_7|NC_009767.1_954521_956960_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|486aa|up_6|NC_009767.1_957450_958908_+	TIGR00947, 2A73, putative bicarbonate transporter, IctB family	NA|360aa|up_5|NC_009767.1_959305_960385_-	PLN02721, PLN02721, threonine aldolase	NA|289aa|up_4|NC_009767.1_961277_962144_+	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]	NA|355aa|up_3|NC_009767.1_962720_963785_+	COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]	NA|313aa|up_2|NC_009767.1_963790_964729_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|436aa|up_1|NC_009767.1_964762_966070_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|138aa|up_0|NC_009767.1_966062_966476_+	TIGR01354, Cytidine_deaminase, cytidine deaminase, homotetrameric	NA|833aa|down_0|NC_009767.1_966820_969319_-	cd05805, MPG1_transferase, GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity	NA|130aa|down_1|NC_009767.1_969579_969969_-	TIGR01837, to_the_polyhydroxyalkanoate_inclusion, poly(hydroxyalkanoate) granule-associated protein	NA|315aa|down_2|NC_009767.1_970253_971198_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|681aa|down_3|NC_009767.1_971720_973763_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|409aa|down_4|NC_009767.1_973899_975126_+	PRK11646, PRK11646, multidrug efflux MFS transporter MdtH	NA|486aa|down_5|NC_009767.1_975245_976703_+	NA	NA|154aa|down_6|NC_009767.1_977355_977817_+	pfam08239, SH3_3, Bacterial SH3 domain	NA|251aa|down_7|NC_009767.1_977797_978550_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|322aa|down_8|NC_009767.1_978619_979585_-	PRK06815, PRK06815, threonine/serine dehydratase	NA|378aa|down_9|NC_009767.1_979787_980921_+	cd00140, beta_clamp, Beta clamp domain
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	20	984797-985092	2	PILER-CR	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	AGCCCGCCCGCCGCTTCTCGTGGTTCGACAAGTC	34	0	0	NA	NA	NA	3	3	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|486aa|up_6|NC_009767.1_975245_976703_+,NA|115aa|up_1|NC_009767.1_980927_981272_+,NA|413aa|down_8|NC_009767.1_995595_996834_-	NA|315aa|up_9|NC_009767.1_970253_971198_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|681aa|up_8|NC_009767.1_971720_973763_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|409aa|up_7|NC_009767.1_973899_975126_+	PRK11646, PRK11646, multidrug efflux MFS transporter MdtH	NA|486aa|up_6|NC_009767.1_975245_976703_+	NA	NA|154aa|up_5|NC_009767.1_977355_977817_+	pfam08239, SH3_3, Bacterial SH3 domain	NA|251aa|up_4|NC_009767.1_977797_978550_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|322aa|up_3|NC_009767.1_978619_979585_-	PRK06815, PRK06815, threonine/serine dehydratase	NA|378aa|up_2|NC_009767.1_979787_980921_+	cd00140, beta_clamp, Beta clamp domain	NA|115aa|up_1|NC_009767.1_980927_981272_+	NA	NA|383aa|up_0|NC_009767.1_981310_982459_+	pfam09594, GT87, Glycosyltransferase family 87	NA|660aa|down_0|NC_009767.1_986315_988295_-	pfam09852, DUF2079, Predicted membrane protein (DUF2079)	NA|374aa|down_1|NC_009767.1_988284_989406_-	pfam09594, GT87, Glycosyltransferase family 87	NA|384aa|down_2|NC_009767.1_989392_990544_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|235aa|down_3|NC_009767.1_990366_991071_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|359aa|down_4|NC_009767.1_991073_992150_-	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|467aa|down_5|NC_009767.1_992136_993537_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|360aa|down_6|NC_009767.1_993239_994319_-	pfam09594, GT87, Glycosyltransferase family 87	NA|344aa|down_7|NC_009767.1_994315_995347_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|413aa|down_8|NC_009767.1_995595_996834_-	NA	NA|138aa|down_9|NC_009767.1_997619_998033_-	pfam01934, DUF86, Protein of unknown function DUF86
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	21	1001118-1002206	2	CRT	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CGCCACAAATGCGAGATAAATCTCGCGCTACGCC	34	12	831	1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001152-1001172|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001207-1001227|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-1001351|1001331-10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_009767.1_2197697-2197677|NC_009767.1_2197766-2197746|NC_009767.1_5264211-5264191|NC_009767.1_711354-711374|NC_009767.1_711451-711471|NC_009767.1_960726-960746|NC_009767.1_1002207-1002227|NC_009767.1_1505088-1505108|NC_009767.1_1505318-1505338|NC_009767.1_1505484-1505504|NC_009767.1_1505636-1505656|NC_009767.1_3980734-3980754|NC_009767.1_3980964-3980984|NC_009767.1_5539797-5539817|NC_009767.1_5684232-5684252|NC_009767.1_2197421-2197401|NC_009767.1_2197849-2197829|NC_009767.1_2197932-2197912|NC_009767.1_4711530-4711510|NC_009767.1_4740417-4740397|NC_009767.1_5263778-5263758|NC_009767.1_5263904-5263884|NC_009767.1_5264030-5264010|NC_009767.1_5264124-5264104|NC_009767.1_5264376-5264356|NC_009767.1_5264463-5264443|NC_009767.1_5264550-5264530|NC_009767.1_5264809-5264789|NC_009767.1_5264942-5264922|NC_009767.1_5265114-5265094|NC_009767.1_3980734-3980775|NC_009767.1_5539797-5539838|NC_009767.1_5540225-5540266|NC_009767.1_5452533-5452492|NC_009767.1_1002207-1002227|NC_009767.1_3980734-3980754|NC_009767.1_3980964-3980984|NC_009767.1_5539797-5539817|NC_009767.1_4711530-4711510|NC_009767.1_4740417-4740397|NC_009767.1_960663-960683|NC_009767.1_960726-960746|NC_009767.1_960810-960830|NC_009767.1_960978-960998|NC_009767.1_961146-961166|NC_009767.1_1505088-1505108|NC_009767.1_1505318-1505338|NC_009767.1_1505484-1505504|NC_009767.1_1505636-1505656|NC_009767.1_2243646-2243666|NC_009767.1_3980672-3980692|NC_009767.1_5540156-5540176|NC_009767.1_2038334-2038314|NC_009767.1_2038389-2038369|NC_009767.1_2038610-2038590|NC_009767.1_2197490-2197470|NC_009767.1_2197559-2197539|NC_009767.1_2197628-2197608|NC_009767.1_2197697-2197677|NC_009767.1_2197766-2197746|NC_009767.1_2198107-2198087|NC_009767.1_2246343-2246323|NC_009767.1_2681536-2681516|NC_009767.1_2681600-2681580|NC_009767.1_2681664-2681644|NC_009767.1_2681816-2681796|NC_009767.1_4174754-4174734|NC_009767.1_5451750-5451730|NC_009767.1_5452226-5452206|NC_009767.1_5452730-5452710|NC_009767.1_5452870-5452850|NC_009767.1_961195-961215|NC_009767.1_1505394-1505414|NC_009767.1_1505574-1505594|NC_009767.1_2243785-2243805|NC_009767.1_4754512-4754532|NC_009767.1_4754800-4754820|NC_009767.1_4754868-4754888|NC_009767.1_4755080-4755100|NC_009767.1_4755148-4755168|NC_009767.1_4755216-4755236|NC_009767.1_4755520-4755540|NC_009767.1_4755588-4755608|NC_009767.1_4930247-4930267|NC_009767.1_5540087-5540107|NC_009767.1_5540225-5540245|NC_009767.1_5540515-5540535|NC_009767.1_5540584-5540604|NC_009767.1_5540653-5540673|NC_009767.1_5540715-5540735|NC_009767.1_5540784-5540804|NC_009767.1_5540853-5540873|NC_009767.1_5540922-5540942|NC_009767.1_5540991-5541011|NC_009767.1_2197421-2197401|NC_009767.1_2197849-2197829|NC_009767.1_2197932-2197912|NC_009767.1_2238523-2238503|NC_009767.1_2352861-2352841|NC_009767.1_2352939-2352919|NC_009767.1_4174070-4174050|NC_009767.1_4174148-4174128|NC_009767.1_4174256-4174236|NC_009767.1_4904374-4904354|NC_009767.1_5263778-5263758|NC_009767.1_5263904-5263884|NC_009767.1_5264030-5264010|NC_009767.1_5264124-5264104|NC_009767.1_5264376-5264356|NC_009767.1_5264463-5264443|NC_009767.1_5264550-5264530|NC_009767.1_5264809-5264789|NC_009767.1_5264942-5264922|NC_009767.1_5265114-5265094|NC_009767.1_5452086-5452066|NC_009767.1_4711530-4711496|NC_009767.1_4740417-4740383|NC_009767.1_24412-24432|NC_009767.1_24481-24501|NC_009767.1_1629689-1629709|NC_009767.1_2243646-2243666|NC_009767.1_2243785-2243805|NC_009767.1_2244109-2244129|NC_009767.1_3669872-3669892|NC_009767.1_3669927-3669947|NC_009767.1_3679231-3679251|NC_009767.1_982569-982549|NC_009767.1_2246016-2245996|NC_009767.1_2246197-2246177|NC_009767.1_2246343-2246323|NC_009767.1_2246461-2246441|NC_009767.1_2246537-2246517|NC_009767.1_2246613-2246593|NC_009767.1_2246689-2246669|NC_009767.1_2246765-2246745|NC_009767.1_2298732-2298712|NC_009767.1_4174754-4174734|NC_009767.1_5451750-5451730|NC_009767.1_5452226-5452206|NC_009767.1_5452730-5452710|NC_009767.1_5452870-5452850|NC_009767.1_19452-19472|NC_009767.1_19787-19807|NC_009767.1_20105-20125|NC_009767.1_20352-20372|NC_009767.1_20449-20469|NC_009767.1_24115-24135|NC_009767.1_25068-25088|NC_009767.1_25149-25169|NC_009767.1_1002207-1002227|NC_009767.1_1505394-1505414|NC_009767.1_1505574-1505594|NC_009767.1_2244192-2244212|NC_009767.1_2631901-2631921|NC_009767.1_2631963-2631983|NC_009767.1_2632025-2632045|NC_009767.1_2632294-2632314|NC_009767.1_2632426-2632446|NC_009767.1_2632488-2632508|NC_009767.1_2632847-2632867|NC_009767.1_3678833-3678853|NC_009767.1_3679036-3679056|NC_009767.1_3980734-3980754|NC_009767.1_3980964-3980984|NC_009767.1_4105743-4105763|NC_009767.1_4105812-4105832|NC_009767.1_4390545-4390565|NC_009767.1_4390614-4390634|NC_009767.1_4390683-4390703|NC_009767.1_4390745-4390765|NC_009767.1_4391159-4391179|NC_009767.1_4754512-4754532|NC_009767.1_4754800-4754820|NC_009767.1_4754868-4754888|NC_009767.1_4755080-4755100|NC_009767.1_4755148-4755168|NC_009767.1_4755216-4755236|NC_009767.1_4755520-4755540|NC_009767.1_4755588-4755608|NC_009767.1_4913566-4913586|NC_009767.1_4913668-4913688|NC_009767.1_4921485-4921505|NC_009767.1_4921696-4921716|NC_009767.1_4922212-4922232|NC_009767.1_4930247-4930267|NC_009767.1_4931149-4931169|NC_009767.1_5539797-5539817|NC_009767.1_5540087-5540107|NC_009767.1_5540225-5540245|NC_009767.1_5540515-5540535|NC_009767.1_5540584-5540604|NC_009767.1_5540653-5540673|NC_009767.1_5540715-5540735|NC_009767.1_5540784-5540804|NC_009767.1_5540853-5540873|NC_009767.1_5540922-5540942|NC_009767.1_5540991-5541011|NC_009767.1_454823-454803|NC_009767.1_454961-454941|NC_009767.1_455258-455238|NC_009767.1_983584-983564|NC_009767.1_1628265-1628245|NC_009767.1_1628348-1628328|NC_009767.1_1628438-1628418|NC_009767.1_1628701-1628681|NC_009767.1_1629061-1629041|NC_009767.1_2238523-2238503|NC_009767.1_2352300-2352280|NC_009767.1_2352385-2352365|NC_009767.1_2352554-2352534|NC_009767.1_2352692-2352672|NC_009767.1_2352783-2352763|NC_009767.1_2352861-2352841|NC_009767.1_2352939-2352919|NC_009767.1_2353219-2353199|NC_009767.1_2531531-2531511|NC_009767.1_2531649-2531629|NC_009767.1_2531767-2531747|NC_009767.1_2531871-2531851|NC_009767.1_2531968-2531948|NC_009767.1_2652069-2652049|NC_009767.1_4174070-4174050|NC_009767.1_4174148-4174128|NC_009767.1_4174256-4174236|NC_009767.1_4711530-4711510|NC_009767.1_4740209-4740189|NC_009767.1_4740417-4740397|NC_009767.1_4887911-4887891|NC_009767.1_4904374-4904354|NC_009767.1_5263778-5263758|NC_009767.1_5263904-5263884|NC_009767.1_5264030-5264010|NC_009767.1_5264124-5264104|NC_009767.1_5264376-5264356|NC_009767.1_5264463-5264443|NC_009767.1_5264550-5264530|NC_009767.1_5264809-5264789|NC_009767.1_5264942-5264922|NC_009767.1_5265114-5265094|NC_009767.1_5452086-5452066	NA	17	17	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|413aa|up_3|NC_009767.1_995595_996834_-,NA|85aa|down_1|NC_009767.1_1003241_1003496_-	NA|384aa|up_9|NC_009767.1_989392_990544_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|235aa|up_8|NC_009767.1_990366_991071_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|359aa|up_7|NC_009767.1_991073_992150_-	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|467aa|up_6|NC_009767.1_992136_993537_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|360aa|up_5|NC_009767.1_993239_994319_-	pfam09594, GT87, Glycosyltransferase family 87	NA|344aa|up_4|NC_009767.1_994315_995347_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|413aa|up_3|NC_009767.1_995595_996834_-	NA	NA|138aa|up_2|NC_009767.1_997619_998033_-	pfam01934, DUF86, Protein of unknown function DUF86	NA|144aa|up_1|NC_009767.1_997989_998421_-	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|664aa|up_0|NC_009767.1_998909_1000901_-	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing)	NA|321aa|down_0|NC_009767.1_1002300_1003263_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|85aa|down_1|NC_009767.1_1003241_1003496_-	NA	NA|424aa|down_2|NC_009767.1_1003599_1004871_-	cd10931, CE4_u7, Putative catalytic domain of uncharacterized bacterial proteins from the carbohydrate esterase 4 superfamily	NA|309aa|down_3|NC_009767.1_1004899_1005826_-	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain	NA|223aa|down_4|NC_009767.1_1005829_1006498_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|480aa|down_5|NC_009767.1_1006494_1007934_-	COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|453aa|down_6|NC_009767.1_1008088_1009447_+	pfam13546, DDE_5, DDE superfamily endonuclease	NA|118aa|down_7|NC_009767.1_1009615_1009969_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|489aa|down_8|NC_009767.1_1010445_1011912_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|355aa|down_9|NC_009767.1_1012392_1013457_-	TIGR03586, PseI, pseudaminic acid synthase
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	22	1020266-1020374	19	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CCATCCGCCTGCTCCCTTCCATTCCTCGTCTCTCAAG	37	1	1	1020303-1020337	NC_009767.1_3967809-3967843	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA	NA|480aa|up_9|NC_009767.1_1006494_1007934_-	COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|453aa|up_8|NC_009767.1_1008088_1009447_+	pfam13546, DDE_5, DDE superfamily endonuclease	NA|118aa|up_7|NC_009767.1_1009615_1009969_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|489aa|up_6|NC_009767.1_1010445_1011912_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|355aa|up_5|NC_009767.1_1012392_1013457_-	TIGR03586, PseI, pseudaminic acid synthase	NA|503aa|up_4|NC_009767.1_1013453_1014962_-	TIGR03590, PseG, UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase	NA|241aa|up_3|NC_009767.1_1015361_1016084_-	cd02518, GT2_SpsF, SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat	NA|114aa|up_2|NC_009767.1_1016205_1016547_-	TIGR03587, Pse_Me-ase, pseudaminic acid biosynthesis-associated methylase	NA|401aa|up_1|NC_009767.1_1016686_1017889_-	TIGR03588, PseC, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA|326aa|up_0|NC_009767.1_1017885_1018863_-	TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	NA|394aa|down_0|NC_009767.1_1022095_1023277_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|131aa|down_1|NC_009767.1_1023627_1024020_-	pfam05635, 23S_rRNA_IVP, 23S rRNA-intervening sequence protein	NA|213aa|down_2|NC_009767.1_1024351_1024990_-	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain	NA|357aa|down_3|NC_009767.1_1025275_1026346_-	cd03786, GTB_UDP-GlcNAc_2-Epimerase, UDP-N-acetylglucosamine 2-epimerase and similar proteins	NA|346aa|down_4|NC_009767.1_1027245_1028283_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|523aa|down_5|NC_009767.1_1029312_1030881_-	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase	NA|419aa|down_6|NC_009767.1_1030953_1032210_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|265aa|down_7|NC_009767.1_1032444_1033239_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|431aa|down_8|NC_009767.1_1033241_1034534_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|331aa|down_9|NC_009767.1_1034530_1035523_-	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	23	1027108-1027217	20	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GACGCGCCAGACCCCTCGCGCGGCTCGGGGTGAC	34	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|328aa|down_8|NC_009767.1_1038577_1039561_-	NA|355aa|up_9|NC_009767.1_1012392_1013457_-	TIGR03586, PseI, pseudaminic acid synthase	NA|503aa|up_8|NC_009767.1_1013453_1014962_-	TIGR03590, PseG, UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase	NA|241aa|up_7|NC_009767.1_1015361_1016084_-	cd02518, GT2_SpsF, SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat	NA|114aa|up_6|NC_009767.1_1016205_1016547_-	TIGR03587, Pse_Me-ase, pseudaminic acid biosynthesis-associated methylase	NA|401aa|up_5|NC_009767.1_1016686_1017889_-	TIGR03588, PseC, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA|326aa|up_4|NC_009767.1_1017885_1018863_-	TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	NA|394aa|up_3|NC_009767.1_1022095_1023277_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|131aa|up_2|NC_009767.1_1023627_1024020_-	pfam05635, 23S_rRNA_IVP, 23S rRNA-intervening sequence protein	NA|213aa|up_1|NC_009767.1_1024351_1024990_-	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain	NA|357aa|up_0|NC_009767.1_1025275_1026346_-	cd03786, GTB_UDP-GlcNAc_2-Epimerase, UDP-N-acetylglucosamine 2-epimerase and similar proteins	NA|346aa|down_0|NC_009767.1_1027245_1028283_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|523aa|down_1|NC_009767.1_1029312_1030881_-	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase	NA|419aa|down_2|NC_009767.1_1030953_1032210_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|265aa|down_3|NC_009767.1_1032444_1033239_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|431aa|down_4|NC_009767.1_1033241_1034534_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|331aa|down_5|NC_009767.1_1034530_1035523_-	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|424aa|down_6|NC_009767.1_1035527_1036799_-	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|640aa|down_7|NC_009767.1_1036654_1038574_-	TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1	NA|328aa|down_8|NC_009767.1_1038577_1039561_-	NA	NA|288aa|down_9|NC_009767.1_1039641_1040505_-	cd06260, DUF820, Domain of unknown function (DUF820)
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	24	1214126-1214234	21	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GGCATCTTCAATCGTCATTGGTATACGATCGTGAAAGC	38	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|62aa|down_3|NC_009767.1_1218577_1218763_-,NA|62aa|down_4|NC_009767.1_1219201_1219387_-	NA|409aa|up_9|NC_009767.1_1195113_1196340_+	TIGR04253, mesacon_CoA_iso, mesaconyl-CoA isomerase	NA|348aa|up_8|NC_009767.1_1196349_1197393_+	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|353aa|up_7|NC_009767.1_1197408_1198467_+	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes	NA|270aa|up_6|NC_009767.1_1198487_1199297_-	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	NA|396aa|up_5|NC_009767.1_1199933_1201121_+	PRK09237, PRK09237, amidohydrolase/deacetylase family metallohydrolase	NA|322aa|up_4|NC_009767.1_1201203_1202169_+	cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs	NA|276aa|up_3|NC_009767.1_1202519_1203347_-	pfam04264, YceI, YceI-like domain	NA|915aa|up_2|NC_009767.1_1203565_1206310_+	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]	NA|872aa|up_1|NC_009767.1_1206752_1209368_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|776aa|up_0|NC_009767.1_1209718_1212046_+	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain	NA|463aa|down_0|NC_009767.1_1214352_1215741_-	pfam07143, CrtC, CrtC N-terminal lipocalin domain	NA|334aa|down_1|NC_009767.1_1215773_1216775_-	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed	NA|485aa|down_2|NC_009767.1_1216973_1218428_+	PRK12273, aspA, aspartate ammonia-lyase; Provisional	NA|62aa|down_3|NC_009767.1_1218577_1218763_-	NA	NA|62aa|down_4|NC_009767.1_1219201_1219387_-	NA	NA|368aa|down_5|NC_009767.1_1220098_1221202_+	cd02035, ArsA, Arsenical pump-driving ATPase ArsA	NA|499aa|down_6|NC_009767.1_1221496_1222993_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|453aa|down_7|NC_009767.1_1223083_1224442_+	pfam13546, DDE_5, DDE superfamily endonuclease	NA|2877aa|down_8|NC_009767.1_1226040_1234671_+	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|253aa|down_9|NC_009767.1_1234833_1235592_+	pfam10411, DsbC_N, Disulfide bond isomerase protein N-terminus
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	25	1249931-1250043	22	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	TCCGCGACAGCGGACTGGCCAGGGCATCTGCCCGCGACG	39	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|66aa|up_1|NC_009767.1_1248511_1248709_+,NA	NA|389aa|up_9|NC_009767.1_1239604_1240771_+	PRK00087, PRK00087, bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1	NA|300aa|up_8|NC_009767.1_1241137_1242037_-	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase	NA|377aa|up_7|NC_009767.1_1242364_1243495_+	COG3407, MVD1, Mevalonate pyrophosphate decarboxylase [Lipid metabolism]	NA|370aa|up_6|NC_009767.1_1243898_1245008_+	cd05829, Sortase_F, Sortase domain found in the class F family of sortases	NA|173aa|up_5|NC_009767.1_1245015_1245534_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|339aa|up_4|NC_009767.1_1245557_1246574_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|132aa|up_3|NC_009767.1_1246636_1247032_+	COG3523, IcmF, Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and    vesicular transport]	NA|288aa|up_2|NC_009767.1_1247194_1248058_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|66aa|up_1|NC_009767.1_1248511_1248709_+	NA	NA|331aa|up_0|NC_009767.1_1248771_1249764_-	pfam04018, DUF368, Domain of unknown function (DUF368)	NA|451aa|down_0|NC_009767.1_1250239_1251592_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|258aa|down_1|NC_009767.1_1251957_1252731_+	cd01641, Bacterial_IMPase_like_1, Predominantly bacterial family of Mg++ dependend phosphatases, related to inositol monophosphatases	NA|417aa|down_2|NC_009767.1_1253422_1254673_+	PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|416aa|down_3|NC_009767.1_1254681_1255929_+	PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|175aa|down_4|NC_009767.1_1255947_1256472_+	pfam03703, bPH_2, Bacterial PH domain	NA|302aa|down_5|NC_009767.1_1256473_1257379_-	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|514aa|down_6|NC_009767.1_1257443_1258985_+	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|115aa|down_7|NC_009767.1_1258995_1259340_+	pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain	NA|152aa|down_8|NC_009767.1_1259336_1259792_+	PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated	NA|377aa|down_9|NC_009767.1_1260492_1261623_+	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	26	1294968-1295075	23	CRISPRCasFinder	no	cas7	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Unclear	GCGCGTAGGCTGCACAGCGGCAGCGACGCACTCTC	35	0	0	NA	NA	NA	1	1	Unclear	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA	NA|385aa|up_9|NC_009767.1_1288522_1289677_+	PRK06064, PRK06064, thiolase domain-containing protein	NA|133aa|up_8|NC_009767.1_1289692_1290091_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|49aa|up_7|NC_009767.1_1290173_1290320_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|38aa|up_6|NC_009767.1_1290903_1291017_-	pfam09572, RE_XamI, XamI restriction endonuclease	NA|51aa|up_5|NC_009767.1_1291018_1291171_-	pfam09572, RE_XamI, XamI restriction endonuclease	NA|186aa|up_4|NC_009767.1_1291497_1292055_-	TIGR02952, RNA_polymerase_sigma-70_factor_ECF_subfamily, RNA polymerase sigma-70 factor, TIGR02952 family	NA|219aa|up_3|NC_009767.1_1292199_1292856_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA|225aa|up_2|NC_009767.1_1292872_1293547_+	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|255aa|up_1|NC_009767.1_1293557_1294322_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	cas7|76aa|up_0|NC_009767.1_1294664_1294892_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	NA|128aa|down_0|NC_009767.1_1295420_1295804_-	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs)	NA|787aa|down_1|NC_009767.1_1296346_1298707_+	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|793aa|down_2|NC_009767.1_1298946_1301325_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|397aa|down_3|NC_009767.1_1301441_1302632_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|229aa|down_4|NC_009767.1_1302662_1303349_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|392aa|down_5|NC_009767.1_1303440_1304616_-	PRK05101, PRK05101, galactokinase; Provisional	NA|747aa|down_6|NC_009767.1_1304887_1307128_+	pfam03170, BcsB, Bacterial cellulose synthase subunit	NA|955aa|down_7|NC_009767.1_1307186_1310051_+	pfam18582, HZS_alpha, Hydrazine synthase alpha subunit middle domain	NA|292aa|down_8|NC_009767.1_1310117_1310993_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|282aa|down_9|NC_009767.1_1311103_1311949_+	pfam08378, NERD, Nuclease-related domain
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	27	1330006-1330098	24	CRISPRCasFinder	no	WYL,cas3,cas7,cas5	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Unclear	GTCGCCTTCCCCCCGGAAGGCGTGGA	26	0	0	NA	NA	NA	1	1	Unclear	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	cas5|232aa|up_6|NC_009767.1_1325481_1326177_+,NA|76aa|up_5|NC_009767.1_1326338_1326566_-,NA|102aa|up_4|NC_009767.1_1326645_1326951_-,NA|114aa|up_3|NC_009767.1_1326982_1327324_+,NA|95aa|down_2|NC_009767.1_1333201_1333486_+,NA|289aa|down_4|NC_009767.1_1336423_1337290_-,NA|462aa|down_6|NC_009767.1_1339703_1341089_-	WYL|352aa|up_9|NC_009767.1_1319116_1320172_+	pfam13280, WYL, WYL domain	cas3|860aa|up_8|NC_009767.1_1320174_1322754_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas7|312aa|up_7|NC_009767.1_1324543_1325479_+	pfam01905, DevR, CRISPR-associated negative auto-regulator DevR/Csa2	cas5|232aa|up_6|NC_009767.1_1325481_1326177_+	NA	NA|76aa|up_5|NC_009767.1_1326338_1326566_-	NA	NA|102aa|up_4|NC_009767.1_1326645_1326951_-	NA	NA|114aa|up_3|NC_009767.1_1326982_1327324_+	NA	NA|80aa|up_2|NC_009767.1_1327534_1327774_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	NA|309aa|up_1|NC_009767.1_1328294_1329221_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|238aa|up_0|NC_009767.1_1329254_1329968_-	PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional	NA|107aa|down_0|NC_009767.1_1330244_1330565_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|435aa|down_1|NC_009767.1_1331689_1332994_-	cd06176, MFS_BCD_PucC-like, Bacteriochlorophyll delivery (BCD) family, also called PucC family, of the Major Facilitator Superfamily	NA|95aa|down_2|NC_009767.1_1333201_1333486_+	NA	NA|834aa|down_3|NC_009767.1_1333532_1336034_-	TIGR04121, ATP-dependent_helicase, DEXH box helicase, DNA ligase-associated	NA|289aa|down_4|NC_009767.1_1336423_1337290_-	NA	NA|408aa|down_5|NC_009767.1_1338034_1339258_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|462aa|down_6|NC_009767.1_1339703_1341089_-	NA	NA|247aa|down_7|NC_009767.1_1341291_1342032_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|344aa|down_8|NC_009767.1_1342102_1343134_+	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan	NA|495aa|down_9|NC_009767.1_1343130_1344615_+	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	28	1339587-1339683	25	CRISPRCasFinder	no	cas3,cas7,cas5	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Unclear	AGGGTGACAGGCGCCCGACGTCGTGATGG	29	0	0	NA	NA	NA	1	1	Unclear	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|114aa|up_9|NC_009767.1_1326982_1327324_+,NA|95aa|up_3|NC_009767.1_1333201_1333486_+,NA|289aa|up_1|NC_009767.1_1336423_1337290_-,NA|462aa|down_0|NC_009767.1_1339703_1341089_-,NA|888aa|down_4|NC_009767.1_1344756_1347420_+	NA|114aa|up_9|NC_009767.1_1326982_1327324_+	NA	NA|80aa|up_8|NC_009767.1_1327534_1327774_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	NA|309aa|up_7|NC_009767.1_1328294_1329221_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|238aa|up_6|NC_009767.1_1329254_1329968_-	PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional	NA|107aa|up_5|NC_009767.1_1330244_1330565_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|435aa|up_4|NC_009767.1_1331689_1332994_-	cd06176, MFS_BCD_PucC-like, Bacteriochlorophyll delivery (BCD) family, also called PucC family, of the Major Facilitator Superfamily	NA|95aa|up_3|NC_009767.1_1333201_1333486_+	NA	NA|834aa|up_2|NC_009767.1_1333532_1336034_-	TIGR04121, ATP-dependent_helicase, DEXH box helicase, DNA ligase-associated	NA|289aa|up_1|NC_009767.1_1336423_1337290_-	NA	NA|408aa|up_0|NC_009767.1_1338034_1339258_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|462aa|down_0|NC_009767.1_1339703_1341089_-	NA	NA|247aa|down_1|NC_009767.1_1341291_1342032_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|344aa|down_2|NC_009767.1_1342102_1343134_+	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan	NA|495aa|down_3|NC_009767.1_1343130_1344615_+	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|888aa|down_4|NC_009767.1_1344756_1347420_+	NA	NA|451aa|down_5|NC_009767.1_1347707_1349060_-	COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]	NA|203aa|down_6|NC_009767.1_1349341_1349950_+	cd06350, PBP1_GPCR_family_C-like, ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate; categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs)	NA|449aa|down_7|NC_009767.1_1350030_1351377_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|484aa|down_8|NC_009767.1_1351602_1353054_-	PRK05326, PRK05326, potassium/proton antiporter	NA|169aa|down_9|NC_009767.1_1353513_1354020_-	PRK00522, tpx, thiol peroxidase
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	29	1402390-1402501	26	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	TGTGCGTCGGCGCGTCAATCGTTGCGAGCCGTTCC	35	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA	NA|219aa|up_9|NC_009767.1_1389314_1389971_+	PRK00215, PRK00215, transcriptional repressor LexA	NA|199aa|up_8|NC_009767.1_1390001_1390598_+	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|386aa|up_7|NC_009767.1_1390594_1391752_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|545aa|up_6|NC_009767.1_1394117_1395752_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|87aa|up_5|NC_009767.1_1396094_1396355_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|347aa|up_4|NC_009767.1_1397015_1398056_+	cd10001, HDAC_classII_APAH, Histone deacetylase class IIa	NA|195aa|up_3|NC_009767.1_1398062_1398647_+	PRK04296, PRK04296, thymidine kinase; Provisional	NA|299aa|up_2|NC_009767.1_1398656_1399553_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|354aa|up_1|NC_009767.1_1400016_1401078_+	cd07010, cupin_PMI_type_I_N_bac, Phosphomannose isomerase in bacteria and archaea, N-terminal cupin domain	NA|324aa|up_0|NC_009767.1_1401348_1402320_+	pfam01944, SpoIIM, Stage II sporulation protein M	NA|470aa|down_0|NC_009767.1_1404005_1405415_-	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|867aa|down_1|NC_009767.1_1405754_1408355_+	pfam13699, DUF4157, Domain of unknown function (DUF4157)	NA|251aa|down_2|NC_009767.1_1408623_1409376_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|398aa|down_3|NC_009767.1_1409380_1410574_-	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|415aa|down_4|NC_009767.1_1410591_1411836_-	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning]	NA|276aa|down_5|NC_009767.1_1411853_1412681_-	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane]	NA|372aa|down_6|NC_009767.1_1412673_1413789_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|296aa|down_7|NC_009767.1_1413827_1414715_-	PRK14649, PRK14649, UDP-N-acetylmuramate dehydrogenase	NA|426aa|down_8|NC_009767.1_1414718_1415996_-	sd00006, TPR, Tetratricopeptide repeat	NA|477aa|down_9|NC_009767.1_1415992_1417423_-	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	30	1451175-1451839	3	CRT	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GGGGAAGGGGCGGGTCTGTGACCCGCCCCCNC	32	0	0	NA	NA	NA	12	12	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|262aa|down_2|NC_009767.1_1452777_1453563_+,NA|504aa|down_7|NC_009767.1_1458336_1459848_+,NA|48aa|down_9|NC_009767.1_1461534_1461678_-	NA|163aa|up_9|NC_009767.1_1431472_1431961_+	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|145aa|up_8|NC_009767.1_1431881_1432316_+	COG2445, COG2445, Uncharacterized conserved protein [Function unknown]	NA|572aa|up_7|NC_009767.1_1433176_1434892_-	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|389aa|up_6|NC_009767.1_1435570_1436737_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|926aa|up_5|NC_009767.1_1437081_1439859_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|162aa|up_4|NC_009767.1_1439990_1440476_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|198aa|up_3|NC_009767.1_1440472_1441066_+	PRK14604, ruvA, Holliday junction branch migration protein RuvA	NA|1036aa|up_2|NC_009767.1_1441222_1444330_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|392aa|up_1|NC_009767.1_1444326_1445502_+	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|714aa|up_0|NC_009767.1_1446960_1449102_+	pfam03170, BcsB, Bacterial cellulose synthase subunit	NA|118aa|down_0|NC_009767.1_1451897_1452251_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|126aa|down_1|NC_009767.1_1452303_1452681_+	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|262aa|down_2|NC_009767.1_1452777_1453563_+	NA	NA|232aa|down_3|NC_009767.1_1453562_1454258_+	cd07506, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily	NA|53aa|down_4|NC_009767.1_1454374_1454533_-	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]	NA|358aa|down_5|NC_009767.1_1454780_1455854_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|241aa|down_6|NC_009767.1_1455920_1456643_-	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1	NA|504aa|down_7|NC_009767.1_1458336_1459848_+	NA	NA|415aa|down_8|NC_009767.1_1459860_1461105_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|48aa|down_9|NC_009767.1_1461534_1461678_-	NA
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	31	1645928-1646037	27	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CTTTAGCCCGCAGCGCCCTCGGGTCCGCTGCGCGCCCC	38	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|382aa|up_0|NC_009767.1_1644401_1645547_-,NA|541aa|down_5|NC_009767.1_1650438_1652061_-	NA|472aa|up_9|NC_009767.1_1635032_1636448_-	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|291aa|up_8|NC_009767.1_1636475_1637348_-	PRK14111, PRK14111, F0F1 ATP synthase subunit gamma; Provisional	NA|527aa|up_7|NC_009767.1_1637560_1639141_-	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|159aa|up_6|NC_009767.1_1639183_1639660_-	pfam00213, OSCP, ATP synthase delta (OSCP) subunit	NA|164aa|up_5|NC_009767.1_1639712_1640204_-	PRK14473, PRK14473, F0F1 ATP synthase subunit B; Provisional	NA|78aa|up_4|NC_009767.1_1640235_1640469_-	cd18121, ATP-synt_Fo_c, membrane-bound Fo complex of F-ATP synthase, subunit c	NA|332aa|up_3|NC_009767.1_1640559_1641555_-	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated	NA|323aa|up_2|NC_009767.1_1641723_1642692_-	pfam00072, Response_reg, Response regulator receiver domain	NA|557aa|up_1|NC_009767.1_1642714_1644385_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|382aa|up_0|NC_009767.1_1644401_1645547_-	NA	NA|170aa|down_0|NC_009767.1_1646276_1646786_+	pfam04024, PspC, PspC domain	NA|173aa|down_1|NC_009767.1_1646803_1647322_-	pfam02592, Vut_1, Putative vitamin uptake transporter	NA|345aa|down_2|NC_009767.1_1647721_1648756_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|368aa|down_3|NC_009767.1_1648777_1649881_+	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|128aa|down_4|NC_009767.1_1649904_1650288_+	TIGR00026, Hypothetical_protein_Rv1261c/MT1299/Mb1292c	NA|541aa|down_5|NC_009767.1_1650438_1652061_-	NA	NA|431aa|down_6|NC_009767.1_1653089_1654382_+	pfam06439, DUF1080, Domain of Unknown Function (DUF1080)	NA|267aa|down_7|NC_009767.1_1654996_1655797_+	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|166aa|down_8|NC_009767.1_1655811_1656309_+	pfam04461, DUF520, Protein of unknown function (DUF520)	NA|482aa|down_9|NC_009767.1_1656312_1657758_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	32	1711794-1711893	28	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GATTGAAGATGCCGCATTCTTGTCATT	27	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|150aa|up_4|NC_009767.1_1708119_1708569_+,NA|56aa|down_7|NC_009767.1_1717943_1718111_+	NA|119aa|up_9|NC_009767.1_1703617_1703974_-	pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquinone oxidoreductase, chain 3	NA|176aa|up_8|NC_009767.1_1704066_1704594_-	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|422aa|up_7|NC_009767.1_1704595_1705861_-	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional	NA|260aa|up_6|NC_009767.1_1706020_1706800_-	COG5578, COG5578, Predicted integral membrane protein [Function unknown]	NA|333aa|up_5|NC_009767.1_1707039_1708038_-	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|150aa|up_4|NC_009767.1_1708119_1708569_+	NA	NA|149aa|up_3|NC_009767.1_1708623_1709070_-	pfam04977, DivIC, Septum formation initiator	NA|140aa|up_2|NC_009767.1_1709280_1709700_-	pfam04519, Bactofilin, Polymer-forming cytoskeletal	NA|282aa|up_1|NC_009767.1_1710138_1710984_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|142aa|up_0|NC_009767.1_1711192_1711618_+	cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|47aa|down_0|NC_009767.1_1712193_1712334_-	TIGR01552, Hypothetical_protein_Rv3357/MT3465/Mb3392	NA|156aa|down_1|NC_009767.1_1712697_1713165_+	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|204aa|down_2|NC_009767.1_1713161_1713773_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|204aa|down_3|NC_009767.1_1713803_1714415_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|313aa|down_4|NC_009767.1_1714429_1715368_-	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion]	NA|416aa|down_5|NC_009767.1_1715937_1717185_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|239aa|down_6|NC_009767.1_1717105_1717822_-	TIGR04123, hypothetical_protein, metallophosphoesterase, DNA ligase-associated	NA|56aa|down_7|NC_009767.1_1717943_1718111_+	NA	NA|147aa|down_8|NC_009767.1_1718231_1718672_+	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV	NA|670aa|down_9|NC_009767.1_1718878_1720888_+	pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	33	1824757-1824854	29	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CGGTGACCATCCGGCATGGTCACC	24	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|625aa|up_8|NC_009767.1_1812774_1814649_-,NA|281aa|down_0|NC_009767.1_1825456_1826299_-	NA|310aa|up_9|NC_009767.1_1811832_1812762_-	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]	NA|625aa|up_8|NC_009767.1_1812774_1814649_-	NA	NA|504aa|up_7|NC_009767.1_1817225_1818737_+	COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]	NA|58aa|up_6|NC_009767.1_1818911_1819085_+	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|123aa|up_5|NC_009767.1_1819148_1819517_+	pfam00825, Ribonuclease_P, Ribonuclease P	NA|390aa|up_4|NC_009767.1_1819545_1820715_+	COG3392, COG3392, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|237aa|up_3|NC_009767.1_1820718_1821429_+	pfam02963, EcoRI, Restriction endonuclease EcoRI	NA|346aa|up_2|NC_009767.1_1821564_1822602_+	TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain	NA|230aa|up_1|NC_009767.1_1822681_1823371_+	COG1847, Jag, Predicted RNA-binding protein [General function prediction only]	NA|273aa|up_0|NC_009767.1_1823445_1824264_+	cd01937, ribokinase_group_D, Ribokinase-like subgroup D	NA|281aa|down_0|NC_009767.1_1825456_1826299_-	NA	NA|218aa|down_1|NC_009767.1_1826298_1826952_-	cd19365, TenA_C-like, uncharacterized TenA_C proteins	NA|263aa|down_2|NC_009767.1_1827260_1828049_-	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|263aa|down_3|NC_009767.1_1828274_1829063_-	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|212aa|down_4|NC_009767.1_1829212_1829848_+	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|71aa|down_5|NC_009767.1_1829852_1830065_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|118aa|down_6|NC_009767.1_1830101_1830455_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|263aa|down_7|NC_009767.1_1830451_1831240_+	cd18095, SpoU-like_rRNA-MTase, SAM-dependent rRNA methylase related to SpoU-TrmH	NA|348aa|down_8|NC_009767.1_1831676_1832720_+	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|611aa|down_9|NC_009767.1_1832719_1834552_+	COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	34	1838267-1838463	4	CRT	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	NNNGNGCGGGCGCAGCGCGAAGCGGAGCGNGC	32	1	1	1838353-1838371	NC_009767.1_1838500-1838518	NA	3	3	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|84aa|down_2|NC_009767.1_1843951_1844203_-,NA|176aa|down_4|NC_009767.1_1846806_1847334_-,NA|106aa|down_8|NC_009767.1_1851784_1852102_+	NA|218aa|up_9|NC_009767.1_1826298_1826952_-	cd19365, TenA_C-like, uncharacterized TenA_C proteins	NA|263aa|up_8|NC_009767.1_1827260_1828049_-	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|263aa|up_7|NC_009767.1_1828274_1829063_-	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|212aa|up_6|NC_009767.1_1829212_1829848_+	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|71aa|up_5|NC_009767.1_1829852_1830065_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|118aa|up_4|NC_009767.1_1830101_1830455_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|263aa|up_3|NC_009767.1_1830451_1831240_+	cd18095, SpoU-like_rRNA-MTase, SAM-dependent rRNA methylase related to SpoU-TrmH	NA|348aa|up_2|NC_009767.1_1831676_1832720_+	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|611aa|up_1|NC_009767.1_1832719_1834552_+	COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]	NA|834aa|up_0|NC_009767.1_1834561_1837063_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|529aa|down_0|NC_009767.1_1839112_1840699_-	pfam13518, HTH_28, Helix-turn-helix domain	NA|811aa|down_1|NC_009767.1_1841174_1843607_-	pfam12770, CHAT, CHAT domain	NA|84aa|down_2|NC_009767.1_1843951_1844203_-	NA	NA|645aa|down_3|NC_009767.1_1844612_1846547_-	pfam01510, Amidase_2, N-acetylmuramoyl-L-alanine amidase	NA|176aa|down_4|NC_009767.1_1846806_1847334_-	NA	NA|193aa|down_5|NC_009767.1_1847317_1847896_-	TIGR01926, peroxid_rel, uncharacterized peroxidase-related enzyme	NA|319aa|down_6|NC_009767.1_1848920_1849877_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|565aa|down_7|NC_009767.1_1849875_1851570_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|106aa|down_8|NC_009767.1_1851784_1852102_+	NA	NA|174aa|down_9|NC_009767.1_1852363_1852885_+	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	35	1960394-1960510	30	CRISPRCasFinder	no	DinG	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Type IV-A	ACGTGGGAAGGACGCCTCGACCTTTGAGGTCTGCGCCAGGGG	42	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|110aa|down_3|NC_009767.1_1964473_1964803_+	NA|153aa|up_9|NC_009767.1_1945523_1945982_+	TIGR00621, Single-stranded_DNA-binding_protein, single stranded DNA-binding protein (ssb)	NA|91aa|up_8|NC_009767.1_1946002_1946275_+	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|507aa|up_7|NC_009767.1_1946385_1947906_+	pfam13616, Rotamase_3, PPIC-type PPIASE domain	NA|304aa|up_6|NC_009767.1_1949237_1950149_+	pfam10882, bPH_5, Bacterial PH domain	NA|400aa|up_5|NC_009767.1_1950354_1951554_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|954aa|up_4|NC_009767.1_1951568_1954430_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|342aa|up_3|NC_009767.1_1954821_1955847_+	cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria	NA|458aa|up_2|NC_009767.1_1956804_1958178_+	cd06176, MFS_BCD_PucC-like, Bacteriochlorophyll delivery (BCD) family, also called PucC family, of the Major Facilitator Superfamily	NA|266aa|up_1|NC_009767.1_1958193_1958991_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|415aa|up_0|NC_009767.1_1959148_1960393_+	PRK02842, PRK02842, ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit N	NA|564aa|down_0|NC_009767.1_1961007_1962699_+	PRK02910, PRK02910, ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit B	NA|274aa|down_1|NC_009767.1_1962719_1963541_+	PRK13185, chlL, protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional	NA|238aa|down_2|NC_009767.1_1963531_1964245_+	PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated	NA|110aa|down_3|NC_009767.1_1964473_1964803_+	NA	NA|372aa|down_4|NC_009767.1_1964852_1965968_+	PRK13654, PRK13654, magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional	NA|1344aa|down_5|NC_009767.1_1965870_1969902_+	PRK12493, PRK12493, magnesium chelatase subunit H; Provisional	NA|434aa|down_6|NC_009767.1_1969931_1971233_+	cd06176, MFS_BCD_PucC-like, Bacteriochlorophyll delivery (BCD) family, also called PucC family, of the Major Facilitator Superfamily	NA|378aa|down_7|NC_009767.1_1971247_1972381_+	TIGR02030, Magnesium-chelatase_subunit_ChlI, magnesium chelatase ATPase subunit I	DinG|945aa|down_8|NC_009767.1_1972430_1975265_-	PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	NA|374aa|down_9|NC_009767.1_1985595_1986717_-	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	36	1975555-1984892	3,31,5	PILER-CR,CRISPRCasFinder,CRT	no	DinG	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Type IV-A	GTTTCAGTGCTCTTCTGCGAGCCGAAAATTCGGAAA,GTTTCAGTGCTCTTCTGCGAGCCGAAAATTCGGAAAT,GTTTCAGTGCTCTTCTGCGAGCCGAAAATTCGGAAAT	36,37,37	0	0	NA	NA	NA:NA:NA	127,127,127	127	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|110aa|up_5|NC_009767.1_1964473_1964803_+,NA	NA|415aa|up_9|NC_009767.1_1959148_1960393_+	PRK02842, PRK02842, ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit N	NA|564aa|up_8|NC_009767.1_1961007_1962699_+	PRK02910, PRK02910, ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit B	NA|274aa|up_7|NC_009767.1_1962719_1963541_+	PRK13185, chlL, protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional	NA|238aa|up_6|NC_009767.1_1963531_1964245_+	PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated	NA|110aa|up_5|NC_009767.1_1964473_1964803_+	NA	NA|372aa|up_4|NC_009767.1_1964852_1965968_+	PRK13654, PRK13654, magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional	NA|1344aa|up_3|NC_009767.1_1965870_1969902_+	PRK12493, PRK12493, magnesium chelatase subunit H; Provisional	NA|434aa|up_2|NC_009767.1_1969931_1971233_+	cd06176, MFS_BCD_PucC-like, Bacteriochlorophyll delivery (BCD) family, also called PucC family, of the Major Facilitator Superfamily	NA|378aa|up_1|NC_009767.1_1971247_1972381_+	TIGR02030, Magnesium-chelatase_subunit_ChlI, magnesium chelatase ATPase subunit I	DinG|945aa|up_0|NC_009767.1_1972430_1975265_-	PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	NA|374aa|down_0|NC_009767.1_1985595_1986717_-	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional	NA|159aa|down_1|NC_009767.1_1987145_1987622_-	pfam03350, UPF0114, Uncharacterized protein family, UPF0114	NA|205aa|down_2|NC_009767.1_1987628_1988243_-	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|473aa|down_3|NC_009767.1_1988332_1989751_-	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|310aa|down_4|NC_009767.1_1989929_1990859_-	PRK06606, PRK06606, branched-chain amino acid transaminase	NA|537aa|down_5|NC_009767.1_1990916_1992527_-	PRK12344, PRK12344, putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional	NA|280aa|down_6|NC_009767.1_1992551_1993391_-	COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism]	NA|557aa|down_7|NC_009767.1_1993617_1995288_-	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated	NA|137aa|down_8|NC_009767.1_1995518_1995929_-	pfam05635, 23S_rRNA_IVP, 23S rRNA-intervening sequence protein	NA|341aa|down_9|NC_009767.1_1996236_1997259_-	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	37	2062427-2062773	4	PILER-CR	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GGGATTTCGGCGGCGGCCCGCAGGGCCTCCTGCAGCAGGTCGGGAT	46	1	1	2062676-2062747	NC_009767.1_2062132-2062203	NA	3	3	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|274aa|up_2|NC_009767.1_2059826_2060648_-,NA|72aa|up_1|NC_009767.1_2060966_2061182_-,NA|188aa|up_0|NC_009767.1_2061506_2062070_-,NA|207aa|down_7|NC_009767.1_2082821_2083442_-,NA|270aa|down_8|NC_009767.1_2084729_2085539_-,NA|120aa|down_9|NC_009767.1_2085662_2086022_-	NA|472aa|up_9|NC_009767.1_2046415_2047831_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|249aa|up_8|NC_009767.1_2047942_2048689_+	cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E	NA|260aa|up_7|NC_009767.1_2048735_2049515_+	cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E	NA|207aa|up_6|NC_009767.1_2049536_2050157_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|182aa|up_5|NC_009767.1_2050254_2050800_+	pfam14907, NTP_transf_5, Uncharacterized nucleotidyltransferase	NA|1503aa|up_4|NC_009767.1_2051202_2055711_-	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|1230aa|up_3|NC_009767.1_2055797_2059487_-	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|274aa|up_2|NC_009767.1_2059826_2060648_-	NA	NA|72aa|up_1|NC_009767.1_2060966_2061182_-	NA	NA|188aa|up_0|NC_009767.1_2061506_2062070_-	NA	NA|1003aa|down_0|NC_009767.1_2063057_2066066_-	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms]	NA|855aa|down_1|NC_009767.1_2067226_2069791_-	COG1483, COG1483, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|387aa|down_2|NC_009767.1_2069908_2071069_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|910aa|down_3|NC_009767.1_2071068_2073798_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|1130aa|down_4|NC_009767.1_2077698_2081088_-	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|235aa|down_5|NC_009767.1_2081492_2082197_-	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|214aa|down_6|NC_009767.1_2082193_2082835_-	COG5340, COG5340, Predicted transcriptional regulator [Transcription]	NA|207aa|down_7|NC_009767.1_2082821_2083442_-	NA	NA|270aa|down_8|NC_009767.1_2084729_2085539_-	NA	NA|120aa|down_9|NC_009767.1_2085662_2086022_-	NA
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	38	2085534-2085638	32	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CGGCATAGAAGGCTGTGTCTTTGCGCCTTTGTGTT	35	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|72aa|up_9|NC_009767.1_2060966_2061182_-,NA|188aa|up_8|NC_009767.1_2061506_2062070_-,NA|207aa|up_0|NC_009767.1_2082821_2083442_-,NA|120aa|down_0|NC_009767.1_2085662_2086022_-,NA|756aa|down_3|NC_009767.1_2089443_2091711_-	NA|72aa|up_9|NC_009767.1_2060966_2061182_-	NA	NA|188aa|up_8|NC_009767.1_2061506_2062070_-	NA	NA|1003aa|up_7|NC_009767.1_2063057_2066066_-	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms]	NA|855aa|up_6|NC_009767.1_2067226_2069791_-	COG1483, COG1483, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|387aa|up_5|NC_009767.1_2069908_2071069_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|910aa|up_4|NC_009767.1_2071068_2073798_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|1130aa|up_3|NC_009767.1_2077698_2081088_-	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|235aa|up_2|NC_009767.1_2081492_2082197_-	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|214aa|up_1|NC_009767.1_2082193_2082835_-	COG5340, COG5340, Predicted transcriptional regulator [Transcription]	NA|207aa|up_0|NC_009767.1_2082821_2083442_-	NA	NA|120aa|down_0|NC_009767.1_2085662_2086022_-	NA	NA|197aa|down_1|NC_009767.1_2085999_2086590_-	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|686aa|down_2|NC_009767.1_2086593_2088651_-	COG5322, COG5322, Predicted dehydrogenase [General function prediction only]	NA|756aa|down_3|NC_009767.1_2089443_2091711_-	NA	NA|603aa|down_4|NC_009767.1_2091829_2093638_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|338aa|down_5|NC_009767.1_2093682_2094696_+	PRK00059, prsA, peptidylprolyl isomerase; Provisional	NA|507aa|down_6|NC_009767.1_2094692_2096213_+	COG3956, COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]	NA|67aa|down_7|NC_009767.1_2096247_2096448_+	pfam06107, DUF951, Bacterial protein of unknown function (DUF951)	NA|465aa|down_8|NC_009767.1_2096542_2097937_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|282aa|down_9|NC_009767.1_2097952_2098798_+	cd08826, SPFH_eoslipins_u1, Uncharacterized prokaryotic subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	39	2089322-2089417	33	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CGTTCATATCCGTGTGCATCCGTGTGCCATCAG	33	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|207aa|up_4|NC_009767.1_2082821_2083442_-,NA|270aa|up_3|NC_009767.1_2084729_2085539_-,NA|120aa|up_2|NC_009767.1_2085662_2086022_-,NA|756aa|down_0|NC_009767.1_2089443_2091711_-	NA|387aa|up_9|NC_009767.1_2069908_2071069_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|910aa|up_8|NC_009767.1_2071068_2073798_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|1130aa|up_7|NC_009767.1_2077698_2081088_-	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|235aa|up_6|NC_009767.1_2081492_2082197_-	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|214aa|up_5|NC_009767.1_2082193_2082835_-	COG5340, COG5340, Predicted transcriptional regulator [Transcription]	NA|207aa|up_4|NC_009767.1_2082821_2083442_-	NA	NA|270aa|up_3|NC_009767.1_2084729_2085539_-	NA	NA|120aa|up_2|NC_009767.1_2085662_2086022_-	NA	NA|197aa|up_1|NC_009767.1_2085999_2086590_-	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|686aa|up_0|NC_009767.1_2086593_2088651_-	COG5322, COG5322, Predicted dehydrogenase [General function prediction only]	NA|756aa|down_0|NC_009767.1_2089443_2091711_-	NA	NA|603aa|down_1|NC_009767.1_2091829_2093638_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|338aa|down_2|NC_009767.1_2093682_2094696_+	PRK00059, prsA, peptidylprolyl isomerase; Provisional	NA|507aa|down_3|NC_009767.1_2094692_2096213_+	COG3956, COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]	NA|67aa|down_4|NC_009767.1_2096247_2096448_+	pfam06107, DUF951, Bacterial protein of unknown function (DUF951)	NA|465aa|down_5|NC_009767.1_2096542_2097937_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|282aa|down_6|NC_009767.1_2097952_2098798_+	cd08826, SPFH_eoslipins_u1, Uncharacterized prokaryotic subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|261aa|down_7|NC_009767.1_2098785_2099568_-	sd00006, TPR, Tetratricopeptide repeat	NA|435aa|down_8|NC_009767.1_2099644_2100949_-	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated	NA|433aa|down_9|NC_009767.1_2100951_2102250_-	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	40	2178282-2178464	5,34	PILER-CR,CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GTCCCCGTAAGGGCAGGTCTGAGACCTGCCCCTACTACTACCTACCGT,CGTAAGGGCAGGTCTGAGACCTGCCC	48,26	0	0	NA	NA	NA:NA	2,3	3	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|52aa|down_3|NC_009767.1_2183992_2184148_+,NA|91aa|down_4|NC_009767.1_2184155_2184428_+,NA|423aa|down_5|NC_009767.1_2184564_2185833_+,NA|71aa|down_6|NC_009767.1_2186362_2186575_+	NA|128aa|up_9|NC_009767.1_2160734_2161118_-	pfam02643, DUF192, Uncharacterized ACR, COG1430	NA|312aa|up_8|NC_009767.1_2161114_2162050_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|328aa|up_7|NC_009767.1_2162063_2163047_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|466aa|up_6|NC_009767.1_2163191_2164589_-	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|431aa|up_5|NC_009767.1_2164615_2165908_-	cd03111, CpaE-like, pilus assembly ATPase CpaE	NA|337aa|up_4|NC_009767.1_2166162_2167173_-	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|851aa|up_3|NC_009767.1_2167329_2169882_-	sd00038, Kelch, Kelch repeat	NA|827aa|up_2|NC_009767.1_2170007_2172488_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|585aa|up_1|NC_009767.1_2172627_2174382_-	smart00758, PA14, domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins	NA|176aa|up_0|NC_009767.1_2174413_2174941_-	pfam07811, TadE, TadE-like protein	NA|837aa|down_0|NC_009767.1_2178718_2181229_+	PRK06599, PRK06599, DNA topoisomerase I; Validated	NA|223aa|down_1|NC_009767.1_2181773_2182442_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|480aa|down_2|NC_009767.1_2182438_2183878_+	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism]	NA|52aa|down_3|NC_009767.1_2183992_2184148_+	NA	NA|91aa|down_4|NC_009767.1_2184155_2184428_+	NA	NA|423aa|down_5|NC_009767.1_2184564_2185833_+	NA	NA|71aa|down_6|NC_009767.1_2186362_2186575_+	NA	NA|412aa|down_7|NC_009767.1_2187593_2188829_-	cd13692, PBP2_BztA, Substrate bindng domain of ABC glutamate/glutamine/aspartate/asparagine transporter; the type 2 periplasmic binding protein fold	NA|457aa|down_8|NC_009767.1_2189308_2190679_+	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase	NA|555aa|down_9|NC_009767.1_2190867_2192532_-	pfam01752, Peptidase_M9, Collagenase
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	41	2186946-2187029	35	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CATGGATGCCCGTGCGCGGGGGG	23	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|52aa|up_3|NC_009767.1_2183992_2184148_+,NA|91aa|up_2|NC_009767.1_2184155_2184428_+,NA|423aa|up_1|NC_009767.1_2184564_2185833_+,NA|71aa|up_0|NC_009767.1_2186362_2186575_+,NA|114aa|down_3|NC_009767.1_2192636_2192978_-	NA|827aa|up_9|NC_009767.1_2170007_2172488_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|585aa|up_8|NC_009767.1_2172627_2174382_-	smart00758, PA14, domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins	NA|176aa|up_7|NC_009767.1_2174413_2174941_-	pfam07811, TadE, TadE-like protein	NA|837aa|up_6|NC_009767.1_2178718_2181229_+	PRK06599, PRK06599, DNA topoisomerase I; Validated	NA|223aa|up_5|NC_009767.1_2181773_2182442_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|480aa|up_4|NC_009767.1_2182438_2183878_+	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism]	NA|52aa|up_3|NC_009767.1_2183992_2184148_+	NA	NA|91aa|up_2|NC_009767.1_2184155_2184428_+	NA	NA|423aa|up_1|NC_009767.1_2184564_2185833_+	NA	NA|71aa|up_0|NC_009767.1_2186362_2186575_+	NA	NA|412aa|down_0|NC_009767.1_2187593_2188829_-	cd13692, PBP2_BztA, Substrate bindng domain of ABC glutamate/glutamine/aspartate/asparagine transporter; the type 2 periplasmic binding protein fold	NA|457aa|down_1|NC_009767.1_2189308_2190679_+	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase	NA|555aa|down_2|NC_009767.1_2190867_2192532_-	pfam01752, Peptidase_M9, Collagenase	NA|114aa|down_3|NC_009767.1_2192636_2192978_-	NA	NA|281aa|down_4|NC_009767.1_2193229_2194072_+	COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]	NA|313aa|down_5|NC_009767.1_2194243_2195182_+	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|277aa|down_6|NC_009767.1_2195194_2196025_+	cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation	NA|185aa|down_7|NC_009767.1_2196037_2196592_+	pfam05685, Uma2, Putative restriction endonuclease	NA|185aa|down_8|NC_009767.1_2196724_2197279_+	pfam05685, Uma2, Putative restriction endonuclease	NA|887aa|down_9|NC_009767.1_2198624_2201285_-	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	42	2214286-2214401	36	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GATGTGGTCGTACTGTTCAGCATCGGCGTCGTCCTCCTGAC	41	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|107aa|up_1|NC_009767.1_2213038_2213359_+,NA|109aa|up_0|NC_009767.1_2213513_2213840_+,NA|84aa|down_0|NC_009767.1_2214466_2214718_+,NA|120aa|down_1|NC_009767.1_2214791_2215151_+,NA|109aa|down_7|NC_009767.1_2221107_2221434_+	NA|161aa|up_9|NC_009767.1_2202441_2202924_+	TIGR04086, hypothetical_protein, putative membrane protein, TIGR04086 family	NA|150aa|up_8|NC_009767.1_2202945_2203395_+	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|274aa|up_7|NC_009767.1_2203538_2204360_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|613aa|up_6|NC_009767.1_2204274_2206113_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|704aa|up_5|NC_009767.1_2206094_2208206_+	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|319aa|up_4|NC_009767.1_2208318_2209275_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|362aa|up_3|NC_009767.1_2210468_2211554_+	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit	NA|453aa|up_2|NC_009767.1_2211495_2212854_-	pfam13546, DDE_5, DDE superfamily endonuclease	NA|107aa|up_1|NC_009767.1_2213038_2213359_+	NA	NA|109aa|up_0|NC_009767.1_2213513_2213840_+	NA	NA|84aa|down_0|NC_009767.1_2214466_2214718_+	NA	NA|120aa|down_1|NC_009767.1_2214791_2215151_+	NA	NA|126aa|down_2|NC_009767.1_2215272_2215650_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|371aa|down_3|NC_009767.1_2216130_2217243_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|294aa|down_4|NC_009767.1_2217300_2218182_-	pfam00950, ABC-3, ABC 3 transport family	NA|264aa|down_5|NC_009767.1_2218447_2219239_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|310aa|down_6|NC_009767.1_2219308_2220238_-	cd01016, TroA, Metal binding protein TroA	NA|109aa|down_7|NC_009767.1_2221107_2221434_+	NA	NA|292aa|down_8|NC_009767.1_2221448_2222324_-	pfam09858, DUF2085, Predicted membrane protein (DUF2085)	NA|293aa|down_9|NC_009767.1_2222596_2223475_+	pfam04203, Sortase, Sortase family
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	43	2238166-2238514	6	CRT	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GCGAGGCGCGAGGNGNGAGNGGCGAGGNGCGAGNGG	36	4	22	2238202-2238243|2238202-2238243|2238202-2238243|2238202-2238243|2238202-2238243|2238202-2238243|2238202-2238243|2238202-2238243|2238202-2238243|2238280-2238326|2238280-2238326|2238280-2238326|2238280-2238326|2238280-2238326|2238280-2238326|2238280-2238326|2238280-2238326|2238280-2238326|2238280-2238326|2238363-2238402|2238439-2238478|2238439-2238478	NC_009767.1_2239808-2239849|NC_009767.1_2238513-2238554|NC_009767.1_2039787-2039828|NC_009767.1_2238788-2238829|NC_009767.1_2238898-2238939|NC_009767.1_2239070-2239111|NC_009767.1_2239373-2239414|NC_009767.1_2239504-2239545|NC_009767.1_2239642-2239683|NC_009767.1_2239313-2239359|NC_009767.1_2238618-2238664|NC_009767.1_2238680-2238726|NC_009767.1_2238976-2239022|NC_009767.1_2239024-2239070|NC_009767.1_2239251-2239297|NC_009767.1_2239458-2239504|NC_009767.1_2238790-2238836|NC_009767.1_2239072-2239118|NC_009767.1_2239506-2239552|NC_009767.1_454836-454875|NC_009767.1_2239810-2239849|NC_009767.1_2238515-2238554	NA	4	4	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|148aa|up_6|NC_009767.1_2228967_2229411_-,NA|83aa|up_5|NC_009767.1_2229473_2229722_-,NA|156aa|down_2|NC_009767.1_2242421_2242889_+,NA|46aa|down_3|NC_009767.1_2242986_2243124_+	NA|177aa|up_9|NC_009767.1_2226463_2226994_-	COG2229, COG2229, Predicted GTPase [General function prediction only]	NA|274aa|up_8|NC_009767.1_2227020_2227842_-	pfam14332, DUF4388, Domain of unknown function (DUF4388)	NA|314aa|up_7|NC_009767.1_2227872_2228814_-	pfam07136, DUF1385, Protein of unknown function (DUF1385)	NA|148aa|up_6|NC_009767.1_2228967_2229411_-	NA	NA|83aa|up_5|NC_009767.1_2229473_2229722_-	NA	NA|372aa|up_4|NC_009767.1_2229738_2230854_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|317aa|up_3|NC_009767.1_2231120_2232071_-	COG1577, ERG12, Mevalonate kinase [Lipid metabolism]	NA|1025aa|up_2|NC_009767.1_2232438_2235513_-	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|253aa|up_1|NC_009767.1_2235563_2236322_-	pfam10114, PocR, Sensory domain found in PocR	NA|513aa|up_0|NC_009767.1_2236455_2237994_-	PRK00074, guaA, GMP synthase; Reviewed	NA|160aa|down_0|NC_009767.1_2239996_2240476_+	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]	NA|486aa|down_1|NC_009767.1_2240700_2242158_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|156aa|down_2|NC_009767.1_2242421_2242889_+	NA	NA|46aa|down_3|NC_009767.1_2242986_2243124_+	NA	NA|195aa|down_4|NC_009767.1_2244566_2245151_-	pfam09988, DUF2227, Uncharacterized metal-binding protein (DUF2227)	NA|131aa|down_5|NC_009767.1_2245384_2245777_-	cd07238, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|469aa|down_6|NC_009767.1_2247204_2248611_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|210aa|down_7|NC_009767.1_2248595_2249225_-	pfam02190, LON_substr_bdg, ATP-dependent protease La (LON) substrate-binding domain	NA|235aa|down_8|NC_009767.1_2249294_2249999_+	cd04502, SGNH_hydrolase_like_7, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	NA|243aa|down_9|NC_009767.1_2250210_2250939_+	COG4947, COG4947, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	44	2243183-2243295	37	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CCTGCACCGTATATCGCTGCCTGTGAGTTACCCTGCCAC	39	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|83aa|up_9|NC_009767.1_2229473_2229722_-,NA|156aa|up_1|NC_009767.1_2242421_2242889_+,NA|46aa|up_0|NC_009767.1_2242986_2243124_+,NA	NA|83aa|up_9|NC_009767.1_2229473_2229722_-	NA	NA|372aa|up_8|NC_009767.1_2229738_2230854_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|317aa|up_7|NC_009767.1_2231120_2232071_-	COG1577, ERG12, Mevalonate kinase [Lipid metabolism]	NA|1025aa|up_6|NC_009767.1_2232438_2235513_-	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|253aa|up_5|NC_009767.1_2235563_2236322_-	pfam10114, PocR, Sensory domain found in PocR	NA|513aa|up_4|NC_009767.1_2236455_2237994_-	PRK00074, guaA, GMP synthase; Reviewed	NA|160aa|up_3|NC_009767.1_2239996_2240476_+	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]	NA|486aa|up_2|NC_009767.1_2240700_2242158_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|156aa|up_1|NC_009767.1_2242421_2242889_+	NA	NA|46aa|up_0|NC_009767.1_2242986_2243124_+	NA	NA|195aa|down_0|NC_009767.1_2244566_2245151_-	pfam09988, DUF2227, Uncharacterized metal-binding protein (DUF2227)	NA|131aa|down_1|NC_009767.1_2245384_2245777_-	cd07238, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|469aa|down_2|NC_009767.1_2247204_2248611_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|210aa|down_3|NC_009767.1_2248595_2249225_-	pfam02190, LON_substr_bdg, ATP-dependent protease La (LON) substrate-binding domain	NA|235aa|down_4|NC_009767.1_2249294_2249999_+	cd04502, SGNH_hydrolase_like_7, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	NA|243aa|down_5|NC_009767.1_2250210_2250939_+	COG4947, COG4947, Uncharacterized protein conserved in bacteria [Function unknown]	NA|433aa|down_6|NC_009767.1_2251572_2252871_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|198aa|down_7|NC_009767.1_2252886_2253480_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|419aa|down_8|NC_009767.1_2253486_2254743_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|312aa|down_9|NC_009767.1_2254754_2255690_-	cd05242, SDR_a8, atypical (a) SDRs, subgroup 8
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	45	2268439-2268542	38	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GCGCGCGCCTGCGCCAGTTGCGCCTC	26	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA	NA|277aa|up_9|NC_009767.1_2259413_2260244_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|130aa|up_8|NC_009767.1_2260236_2260626_-	pfam03745, DUF309, Domain of unknown function (DUF309)	NA|115aa|up_7|NC_009767.1_2260643_2260988_-	cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2	NA|151aa|up_6|NC_009767.1_2261088_2261541_-	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]	NA|357aa|up_5|NC_009767.1_2261686_2262757_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|368aa|up_4|NC_009767.1_2262765_2263869_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|323aa|up_3|NC_009767.1_2264243_2265212_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|325aa|up_2|NC_009767.1_2265344_2266319_-	cd00293, USP_Like, Usp: Universal stress protein family	NA|312aa|up_1|NC_009767.1_2266315_2267251_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|258aa|up_0|NC_009767.1_2267247_2268021_-	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|371aa|down_0|NC_009767.1_2269671_2270784_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|210aa|down_1|NC_009767.1_2270783_2271413_-	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|791aa|down_2|NC_009767.1_2271899_2274272_+	PRK12647, PRK12647, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|139aa|down_3|NC_009767.1_2274283_2274700_+	PRK12509, PRK12509, Na+/H+ antiporter subunit B	NA|116aa|down_4|NC_009767.1_2274704_2275052_+	PRK12659, PRK12659, Na+/H+ antiporter subunit C	NA|499aa|down_5|NC_009767.1_2275095_2276592_+	PRK12663, PRK12663, Na+/H+ antiporter subunit D	NA|157aa|down_6|NC_009767.1_2276601_2277072_+	PRK12651, PRK12651, Na+/H+ antiporter subunit E	NA|88aa|down_7|NC_009767.1_2277071_2277335_+	PRK12599, PRK12599, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|140aa|down_8|NC_009767.1_2277343_2277763_+	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|526aa|down_9|NC_009767.1_2278251_2279829_-	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	46	2295419-2295542	39	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	ACGGATAGGCGCGGATGGGGCGCGCTGTCGTTCCCG	36	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|51aa|up_8|NC_009767.1_2286174_2286327_+,NA|57aa|up_4|NC_009767.1_2289089_2289260_+,NA|85aa|down_1|NC_009767.1_2296161_2296416_-,NA|241aa|down_9|NC_009767.1_2309107_2309830_+	NA|318aa|up_9|NC_009767.1_2284939_2285893_+	pfam12833, HTH_18, Helix-turn-helix domain	NA|51aa|up_8|NC_009767.1_2286174_2286327_+	NA	NA|454aa|up_7|NC_009767.1_2286341_2287703_-	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|223aa|up_6|NC_009767.1_2287699_2288368_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|77aa|up_5|NC_009767.1_2288454_2288685_-	pfam01037, AsnC_trans_reg, Lrp/AsnC ligand binding domain	NA|57aa|up_4|NC_009767.1_2289089_2289260_+	NA	NA|591aa|up_3|NC_009767.1_2289414_2291187_+	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD	NA|404aa|up_2|NC_009767.1_2291293_2292505_+	pfam14353, CpXC, CpXC protein	NA|389aa|up_1|NC_009767.1_2292506_2293673_+	cd14865, Fe-ADH-like, iron-containing alcohol dehydrogenases (Fe-ADH)-like	NA|490aa|up_0|NC_009767.1_2293877_2295347_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|204aa|down_0|NC_009767.1_2295553_2296165_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|85aa|down_1|NC_009767.1_2296161_2296416_-	NA	NA|71aa|down_2|NC_009767.1_2296727_2296940_-	pfam07311, Dodecin, Dodecin	NA|164aa|down_3|NC_009767.1_2297036_2297528_-	cd04332, YbaK_like, YbaK-like	NA|425aa|down_4|NC_009767.1_2298940_2300215_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|1172aa|down_5|NC_009767.1_2300237_2303753_-	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor	NA|254aa|down_6|NC_009767.1_2304554_2305316_+	cd05233, SDR_c, classical (c) SDRs	NA|982aa|down_7|NC_009767.1_2305321_2308267_+	COG0046, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]	NA|273aa|down_8|NC_009767.1_2308289_2309108_+	PRK13668, PRK13668, hypothetical protein; Provisional	NA|241aa|down_9|NC_009767.1_2309107_2309830_+	NA
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	47	2330464-2330576	40	CRISPRCasFinder	no	cas4	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Unclear	GTGGAAGTGGCAGATACCACGCTCAAGCGGGATCGAACC	39	0	0	NA	NA	NA	1	1	Unclear	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|112aa|up_7|NC_009767.1_2324393_2324729_-,NA|85aa|up_6|NC_009767.1_2324725_2324980_-,NA|272aa|up_2|NC_009767.1_2327123_2327939_+,NA|62aa|down_4|NC_009767.1_2335166_2335352_+,NA|138aa|down_9|NC_009767.1_2339844_2340258_-	NA|245aa|up_9|NC_009767.1_2321803_2322538_-	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain	NA|546aa|up_8|NC_009767.1_2322754_2324392_+	pfam10646, Germane, Sporulation and spore germination	NA|112aa|up_7|NC_009767.1_2324393_2324729_-	NA	NA|85aa|up_6|NC_009767.1_2324725_2324980_-	NA	cas4|171aa|up_5|NC_009767.1_2324976_2325489_-	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	NA|83aa|up_4|NC_009767.1_2325492_2325741_-	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	NA|414aa|up_3|NC_009767.1_2325759_2327001_-	pfam02163, Peptidase_M50, Peptidase family M50	NA|272aa|up_2|NC_009767.1_2327123_2327939_+	NA	NA|205aa|up_1|NC_009767.1_2328254_2328869_+	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|412aa|up_0|NC_009767.1_2328878_2330114_+	pfam13367, PrsW-protease, Protease prsW family	NA|295aa|down_0|NC_009767.1_2330960_2331845_+	cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)	NA|349aa|down_1|NC_009767.1_2331855_2332902_+	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase	NA|273aa|down_2|NC_009767.1_2332918_2333737_-	pfam01940, DUF92, Integral membrane protein DUF92	NA|171aa|down_3|NC_009767.1_2334191_2334704_-	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily	NA|62aa|down_4|NC_009767.1_2335166_2335352_+	NA	NA|291aa|down_5|NC_009767.1_2335432_2336305_+	cd05483, retropepsin_like_bacteria, Bacterial aspartate proteases, retropepsin-like protease family	NA|530aa|down_6|NC_009767.1_2336605_2338195_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|265aa|down_7|NC_009767.1_2338246_2339041_+	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|down_8|NC_009767.1_2339040_2339838_+	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|138aa|down_9|NC_009767.1_2339844_2340258_-	NA
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	48	2542547-2542655	41	CRISPRCasFinder	no	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas6,cas1,cas2,Cas9_archaeal	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Type III-B,Type III-C,Type III-D,Type III-A	CATACCACACCCGCGCAGGAGAAGCGTCATGG	32	0	0	NA	NA	NA	1	1	TypeIII-B,TypeIII-C,TypeIII-D,TypeIII-A	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|48aa|up_2|NC_009767.1_2540189_2540333_+,NA|51aa|up_1|NC_009767.1_2541093_2541246_+,NA|337aa|down_1|NC_009767.1_2550397_2551408_+,NA|69aa|down_4|NC_009767.1_2554332_2554539_-,NA|136aa|down_8|NC_009767.1_2558278_2558686_+	NA|472aa|up_9|NC_009767.1_2529901_2531317_-	pfam13485, Peptidase_MA_2, Peptidase MA superfamily	cas10|747aa|up_8|NC_009767.1_2532276_2534517_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|161aa|up_7|NC_009767.1_2534513_2534996_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|278aa|up_6|NC_009767.1_2535014_2535848_+	TIGR02582, CRISPR_type_III-associated_RAMP_protein_Csm3, CRISPR type III-A/MTUBE-associated RAMP protein Csm3	csm4gr5|381aa|up_5|NC_009767.1_2535860_2537003_+	TIGR01903, Hypothetical_protein	csm5gr7|477aa|up_4|NC_009767.1_2537002_2538433_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csx1|489aa|up_3|NC_009767.1_2538726_2540193_+	cd09702, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|48aa|up_2|NC_009767.1_2540189_2540333_+	NA	NA|51aa|up_1|NC_009767.1_2541093_2541246_+	NA	cas6|288aa|up_0|NC_009767.1_2541532_2542396_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas2|94aa|down_0|NC_009767.1_2543681_2543963_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|337aa|down_1|NC_009767.1_2550397_2551408_+	NA	NA|211aa|down_2|NC_009767.1_2552107_2552740_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|375aa|down_3|NC_009767.1_2552773_2553898_+	cd03798, GT4_WlbH-like, Bordetella parapertussis WlbH and similar proteins	NA|69aa|down_4|NC_009767.1_2554332_2554539_-	NA	NA|391aa|down_5|NC_009767.1_2554643_2555816_+	cd08194, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like	NA|457aa|down_6|NC_009767.1_2555951_2557322_+	pfam09852, DUF2079, Predicted membrane protein (DUF2079)	NA|284aa|down_7|NC_009767.1_2557325_2558177_+	pfam09852, DUF2079, Predicted membrane protein (DUF2079)	NA|136aa|down_8|NC_009767.1_2558278_2558686_+	NA	NA|648aa|down_9|NC_009767.1_2559647_2561591_+	COG3211, PhoX, Predicted phosphatase [General function prediction only]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	49	2544138-2549358	6,42,7	PILER-CR,CRISPRCasFinder,CRT	no	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas6,cas1,cas2,Cas9_archaeal	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Type III-B,Type III-C,Type III-D,Type III-A	GTGGAAAAACCCCAAATCCCCGCC----AGGGGATTGAAAC,GTGGAAAAACCCCAAATCCCCGCCAGGGGATTGAAAC,GTGGAAAAACCCCAAATCCCCGCCAGGGGATTGAAAC	41,37,37	1	1	2547148-2547186	NC_009767.1_3045772-3045734	NA:NA:NA	65,68,68	68	TypeIII-B,TypeIII-C,TypeIII-D,TypeIII-A	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|48aa|up_4|NC_009767.1_2540189_2540333_+,NA|51aa|up_3|NC_009767.1_2541093_2541246_+,NA|337aa|down_0|NC_009767.1_2550397_2551408_+,NA|69aa|down_3|NC_009767.1_2554332_2554539_-,NA|136aa|down_7|NC_009767.1_2558278_2558686_+	csm2gr11|161aa|up_9|NC_009767.1_2534513_2534996_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|278aa|up_8|NC_009767.1_2535014_2535848_+	TIGR02582, CRISPR_type_III-associated_RAMP_protein_Csm3, CRISPR type III-A/MTUBE-associated RAMP protein Csm3	csm4gr5|381aa|up_7|NC_009767.1_2535860_2537003_+	TIGR01903, Hypothetical_protein	csm5gr7|477aa|up_6|NC_009767.1_2537002_2538433_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csx1|489aa|up_5|NC_009767.1_2538726_2540193_+	cd09702, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|48aa|up_4|NC_009767.1_2540189_2540333_+	NA	NA|51aa|up_3|NC_009767.1_2541093_2541246_+	NA	cas6|288aa|up_2|NC_009767.1_2541532_2542396_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas1|340aa|up_1|NC_009767.1_2542651_2543671_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|94aa|up_0|NC_009767.1_2543681_2543963_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|337aa|down_0|NC_009767.1_2550397_2551408_+	NA	NA|211aa|down_1|NC_009767.1_2552107_2552740_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|375aa|down_2|NC_009767.1_2552773_2553898_+	cd03798, GT4_WlbH-like, Bordetella parapertussis WlbH and similar proteins	NA|69aa|down_3|NC_009767.1_2554332_2554539_-	NA	NA|391aa|down_4|NC_009767.1_2554643_2555816_+	cd08194, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like	NA|457aa|down_5|NC_009767.1_2555951_2557322_+	pfam09852, DUF2079, Predicted membrane protein (DUF2079)	NA|284aa|down_6|NC_009767.1_2557325_2558177_+	pfam09852, DUF2079, Predicted membrane protein (DUF2079)	NA|136aa|down_7|NC_009767.1_2558278_2558686_+	NA	NA|648aa|down_8|NC_009767.1_2559647_2561591_+	COG3211, PhoX, Predicted phosphatase [General function prediction only]	Cas9_archaeal|169aa|down_9|NC_009767.1_2561675_2562182_-	COG1403, McrA, Restriction endonuclease [Defense mechanisms]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	50	2724473-2724574	43	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	TCCTTGCCTCCCACGTGGATTCGGG	25	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA	NA|329aa|up_9|NC_009767.1_2712984_2713971_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|377aa|up_8|NC_009767.1_2713990_2715121_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|332aa|up_7|NC_009767.1_2715190_2716186_+	pfam11258, DUF3048, Protein of unknown function (DUF3048) N-terminal domain	NA|505aa|up_6|NC_009767.1_2716337_2717852_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|365aa|up_5|NC_009767.1_2717915_2719010_-	pfam13407, Peripla_BP_4, Periplasmic binding protein domain	NA|341aa|up_4|NC_009767.1_2719086_2720109_-	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins	NA|414aa|up_3|NC_009767.1_2720148_2721390_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA	NA|260aa|up_2|NC_009767.1_2721414_2722194_-	cd05233, SDR_c, classical (c) SDRs	NA|383aa|up_1|NC_009767.1_2722186_2723335_-	cd14750, PBP2_TMBP, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose; possesses type 2 periplasmic binding fold	NA|241aa|up_0|NC_009767.1_2723331_2724054_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|334aa|down_0|NC_009767.1_2725042_2726044_+	smart01043, BTAD, Bacterial transcriptional activator domain	NA|234aa|down_1|NC_009767.1_2726261_2726963_+	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins	NA|94aa|down_2|NC_009767.1_2727033_2727315_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|1552aa|down_3|NC_009767.1_2727432_2732088_+	TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC, C-terminal domain	NA|283aa|down_4|NC_009767.1_2732084_2732933_+	pfam00498, FHA, FHA domain	NA|409aa|down_5|NC_009767.1_2732929_2734156_+	TIGR03436, acidobact_VWFA, VWFA-related Acidobacterial domain	NA|346aa|down_6|NC_009767.1_2734165_2735203_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|692aa|down_7|NC_009767.1_2735433_2737509_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|471aa|down_8|NC_009767.1_2737628_2739041_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|289aa|down_9|NC_009767.1_2739151_2740018_+	PRK08581, PRK08581, amidase domain-containing protein
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	51	2740110-2740223	44	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GCCTTATACCAATTACCTGTGAACACCCGGCATGGTCAC	39	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|279aa|down_0|NC_009767.1_2741681_2742518_+,NA|377aa|down_1|NC_009767.1_2742915_2744046_+	NA|334aa|up_9|NC_009767.1_2725042_2726044_+	smart01043, BTAD, Bacterial transcriptional activator domain	NA|234aa|up_8|NC_009767.1_2726261_2726963_+	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins	NA|94aa|up_7|NC_009767.1_2727033_2727315_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|1552aa|up_6|NC_009767.1_2727432_2732088_+	TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC, C-terminal domain	NA|283aa|up_5|NC_009767.1_2732084_2732933_+	pfam00498, FHA, FHA domain	NA|409aa|up_4|NC_009767.1_2732929_2734156_+	TIGR03436, acidobact_VWFA, VWFA-related Acidobacterial domain	NA|346aa|up_3|NC_009767.1_2734165_2735203_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|692aa|up_2|NC_009767.1_2735433_2737509_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|471aa|up_1|NC_009767.1_2737628_2739041_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|289aa|up_0|NC_009767.1_2739151_2740018_+	PRK08581, PRK08581, amidase domain-containing protein	NA|279aa|down_0|NC_009767.1_2741681_2742518_+	NA	NA|377aa|down_1|NC_009767.1_2742915_2744046_+	NA	NA|290aa|down_2|NC_009767.1_2744051_2744921_+	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|446aa|down_3|NC_009767.1_2745005_2746343_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|258aa|down_4|NC_009767.1_2746786_2747560_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|338aa|down_5|NC_009767.1_2747563_2748577_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|479aa|down_6|NC_009767.1_2748546_2749983_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|260aa|down_7|NC_009767.1_2749988_2750768_-	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase	NA|85aa|down_8|NC_009767.1_2750947_2751202_-	COG2331, COG2331, Uncharacterized protein conserved in bacteria [Function unknown]	NA|407aa|down_9|NC_009767.1_2751332_2752553_-	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	52	2821379-2821483	45	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CTGGGCATCGACCCGGATGCGGATACCCTGTAA	33	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|109aa|down_8|NC_009767.1_2848098_2848425_-	NA|445aa|up_9|NC_009767.1_2807630_2808965_-	pfam13204, DUF4038, Protein of unknown function (DUF4038)	NA|468aa|up_8|NC_009767.1_2809166_2810570_-	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase	NA|848aa|up_7|NC_009767.1_2810581_2813125_-	COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]	NA|414aa|up_6|NC_009767.1_2813142_2814384_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|462aa|up_5|NC_009767.1_2814449_2815835_-	COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]	NA|446aa|up_4|NC_009767.1_2815870_2817208_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|226aa|up_3|NC_009767.1_2817245_2817923_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|245aa|up_2|NC_009767.1_2818489_2819224_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|259aa|up_1|NC_009767.1_2819245_2820022_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|231aa|up_0|NC_009767.1_2820043_2820736_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|5177aa|down_0|NC_009767.1_2821551_2837082_-	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|238aa|down_1|NC_009767.1_2840285_2840999_-	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|248aa|down_2|NC_009767.1_2841245_2841989_+	pfam07947, YhhN, YhhN family	NA|289aa|down_3|NC_009767.1_2841906_2842773_-	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel	NA|259aa|down_4|NC_009767.1_2842769_2843546_-	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel	NA|357aa|down_5|NC_009767.1_2843574_2844645_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|376aa|down_6|NC_009767.1_2844641_2845769_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|693aa|down_7|NC_009767.1_2845958_2848037_-	PRK02628, nadE, NAD synthetase; Reviewed	NA|109aa|down_8|NC_009767.1_2848098_2848425_-	NA	NA|161aa|down_9|NC_009767.1_2848948_2849431_-	cd06260, DUF820, Domain of unknown function (DUF820)
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	53	2848475-2848842	7	PILER-CR	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GGTCGCGCTAGACCCCTCGCTT	22	2	2	2848497-2848548|2848670-2848721	NC_009767.1_2848843-2848894|NC_009767.1_2848843-2848894	NA	4	4	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|109aa|up_0|NC_009767.1_2848098_2848425_-,NA|235aa|down_3|NC_009767.1_2851837_2852542_-,NA|94aa|down_5|NC_009767.1_2854225_2854507_-	NA|218aa|up_9|NC_009767.1_2820757_2821411_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|5177aa|up_8|NC_009767.1_2821551_2837082_-	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|238aa|up_7|NC_009767.1_2840285_2840999_-	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|248aa|up_6|NC_009767.1_2841245_2841989_+	pfam07947, YhhN, YhhN family	NA|289aa|up_5|NC_009767.1_2841906_2842773_-	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel	NA|259aa|up_4|NC_009767.1_2842769_2843546_-	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel	NA|357aa|up_3|NC_009767.1_2843574_2844645_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|376aa|up_2|NC_009767.1_2844641_2845769_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|693aa|up_1|NC_009767.1_2845958_2848037_-	PRK02628, nadE, NAD synthetase; Reviewed	NA|109aa|up_0|NC_009767.1_2848098_2848425_-	NA	NA|161aa|down_0|NC_009767.1_2848948_2849431_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|310aa|down_1|NC_009767.1_2849490_2850420_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|443aa|down_2|NC_009767.1_2850457_2851786_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|235aa|down_3|NC_009767.1_2851837_2852542_-	NA	NA|422aa|down_4|NC_009767.1_2852689_2853955_-	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins	NA|94aa|down_5|NC_009767.1_2854225_2854507_-	NA	NA|33aa|down_6|NC_009767.1_2854595_2854694_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|129aa|down_7|NC_009767.1_2854926_2855313_-	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only]	NA|66aa|down_8|NC_009767.1_2855312_2855510_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|327aa|down_9|NC_009767.1_2856394_2857375_-	cd05282, ETR_like, 2-enoyl thioester reductase-like
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	54	2918986-2919303	8	CRT	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CCTCTCGCCTCTCCCCTCTCACCCCGCGCCTCTCGCCTCTCCCCT	45	3	8	2919115-2919132|2919178-2919195|2919178-2919195|2919178-2919195|2919178-2919195|2919178-2919195|2919178-2919195|2919241-2919258	NC_009767.1_2913764-2913747|NC_009767.1_2913729-2913712|NC_009767.1_2913771-2913754|NC_009767.1_3014473-3014456|NC_009767.1_3014550-3014533|NC_009767.1_3414166-3414183|NC_009767.1_3414208-3414225|NC_009767.1_2913764-2913747	NA	4	4	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|88aa|down_1|NC_009767.1_2920642_2920906_-,NA|88aa|down_2|NC_009767.1_2920902_2921166_-,NA|219aa|down_6|NC_009767.1_2926402_2927059_-	NA|282aa|up_9|NC_009767.1_2907717_2908563_+	TIGR03709, PPK2_rel_1, polyphosphate:nucleotide phosphotransferase, PPK2 family	NA|241aa|up_8|NC_009767.1_2908652_2909375_+	pfam02545, Maf, Maf-like protein	NA|255aa|up_7|NC_009767.1_2909353_2910118_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|368aa|up_6|NC_009767.1_2910101_2911205_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|349aa|up_5|NC_009767.1_2911207_2912254_+	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|431aa|up_4|NC_009767.1_2912253_2913546_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|201aa|up_3|NC_009767.1_2913975_2914578_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|94aa|up_2|NC_009767.1_2914949_2915231_+	pfam13937, DUF4212, Domain of unknown function (DUF4212)	NA|723aa|up_1|NC_009767.1_2915249_2917418_+	TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705 subfamily	NA|401aa|up_0|NC_009767.1_2917623_2918826_+	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|362aa|down_0|NC_009767.1_2919455_2920541_-	TIGR03883, DUF2342_F420, uncharacterized protein, coenzyme F420 biosynthesis associated	NA|88aa|down_1|NC_009767.1_2920642_2920906_-	NA	NA|88aa|down_2|NC_009767.1_2920902_2921166_-	NA	NA|862aa|down_3|NC_009767.1_2921419_2924005_-	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|278aa|down_4|NC_009767.1_2924203_2925037_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|232aa|down_5|NC_009767.1_2925104_2925800_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|219aa|down_6|NC_009767.1_2926402_2927059_-	NA	NA|1116aa|down_7|NC_009767.1_2927859_2931207_+	cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3	NA|230aa|down_8|NC_009767.1_2931959_2932649_-	PRK14971, PRK14971, DNA polymerase III subunit gamma/tau	NA|449aa|down_9|NC_009767.1_2933224_2934571_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	55	2986642-2986753	46	CRISPRCasFinder	no	csa3	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Type I-A	AACACCGACCCCTCACGTCGCGCGCCTACGGTTGCAAC	38	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|172aa|down_0|NC_009767.1_2988882_2989398_-	NA|238aa|up_9|NC_009767.1_2975560_2976274_+	COG4305, COG4305, Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]	NA|616aa|up_8|NC_009767.1_2976529_2978377_+	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit	NA|349aa|up_7|NC_009767.1_2978671_2979718_+	PRK05778, PRK05778, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated	csa3|122aa|up_6|NC_009767.1_2979826_2980192_+	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|183aa|up_5|NC_009767.1_2980404_2980953_+	COG1246, ArgA, N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]	NA|277aa|up_4|NC_009767.1_2980903_2981734_+	PRK11873, arsM, arsenite methyltransferase	NA|433aa|up_3|NC_009767.1_2981838_2983137_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|337aa|up_2|NC_009767.1_2983184_2984195_-	PRK08955, PRK08955, glyceraldehyde-3-phosphate dehydrogenase; Validated	NA|258aa|up_1|NC_009767.1_2984224_2984998_-	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family	NA|256aa|up_0|NC_009767.1_2985018_2985786_-	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family	NA|172aa|down_0|NC_009767.1_2988882_2989398_-	NA	NA|313aa|down_1|NC_009767.1_2989534_2990473_-	PRK02308, uvsE, putative UV damage endonuclease; Provisional	NA|508aa|down_2|NC_009767.1_2990593_2992117_+	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|186aa|down_3|NC_009767.1_2992107_2992665_-	pfam16697, Yop-YscD_cpl, Inner membrane component of T3SS, cytoplasmic domain	NA|415aa|down_4|NC_009767.1_2992990_2994235_+	pfam02641, DUF190, Uncharacterized ACR, COG1993	NA|350aa|down_5|NC_009767.1_2994259_2995309_-	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|214aa|down_6|NC_009767.1_2995567_2996209_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|311aa|down_7|NC_009767.1_2996344_2997277_+	sd00006, TPR, Tetratricopeptide repeat	NA|813aa|down_8|NC_009767.1_2997319_2999758_-	cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)	NA|1402aa|down_9|NC_009767.1_3000322_3004528_+	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	56	3016552-3016704	47	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CGGGGCAGGTATGGTGAAACATC	23	0	0	NA	NA	NA	2	2	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|172aa|up_7|NC_009767.1_3006180_3006696_+,NA|69aa|up_4|NC_009767.1_3009138_3009345_+,NA|134aa|down_0|NC_009767.1_3016830_3017232_+,NA|84aa|down_3|NC_009767.1_3018266_3018518_+	NA|1402aa|up_9|NC_009767.1_3000322_3004528_+	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|287aa|up_8|NC_009767.1_3005107_3005968_-	pfam07788, PDDEXK_10, PD-(D/E)XK nuclease superfamily	NA|172aa|up_7|NC_009767.1_3006180_3006696_+	NA	NA|93aa|up_6|NC_009767.1_3006680_3006959_+	pfam04024, PspC, PspC domain	NA|470aa|up_5|NC_009767.1_3007068_3008478_-	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|69aa|up_4|NC_009767.1_3009138_3009345_+	NA	NA|263aa|up_3|NC_009767.1_3009450_3010239_+	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases	NA|553aa|up_2|NC_009767.1_3010975_3012634_+	pfam02310, B12-binding, B12 binding domain	NA|369aa|up_1|NC_009767.1_3012658_3013765_+	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|499aa|up_0|NC_009767.1_3014988_3016485_+	PRK09431, asnB, asparagine synthetase B; Provisional	NA|134aa|down_0|NC_009767.1_3016830_3017232_+	NA	NA|176aa|down_1|NC_009767.1_3017317_3017845_-	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain	NA|114aa|down_2|NC_009767.1_3017944_3018286_-	pfam06305, LapA_dom, Lipopolysaccharide assembly protein A domain	NA|84aa|down_3|NC_009767.1_3018266_3018518_+	NA	NA|260aa|down_4|NC_009767.1_3018835_3019615_-	pfam14344, DUF4397, Domain of unknown function (DUF4397)	NA|346aa|down_5|NC_009767.1_3019878_3020916_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|404aa|down_6|NC_009767.1_3020925_3022137_-	COG4552, Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]	NA|368aa|down_7|NC_009767.1_3022379_3023483_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|345aa|down_8|NC_009767.1_3023824_3024859_+	TIGR03448, mycothiol_MshD, mycothiol synthase	NA|131aa|down_9|NC_009767.1_3031075_3031468_-	pfam05168, HEPN, HEPN domain
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	57	3025176-3025283	48	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GCATGCTTGTCATTCCGAGCGCAGCGAGGAATCT	34	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|134aa|up_8|NC_009767.1_3016830_3017232_+,NA|84aa|up_5|NC_009767.1_3018266_3018518_+,NA|60aa|down_5|NC_009767.1_3034272_3034452_+,NA|89aa|down_6|NC_009767.1_3034821_3035088_+	NA|499aa|up_9|NC_009767.1_3014988_3016485_+	PRK09431, asnB, asparagine synthetase B; Provisional	NA|134aa|up_8|NC_009767.1_3016830_3017232_+	NA	NA|176aa|up_7|NC_009767.1_3017317_3017845_-	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain	NA|114aa|up_6|NC_009767.1_3017944_3018286_-	pfam06305, LapA_dom, Lipopolysaccharide assembly protein A domain	NA|84aa|up_5|NC_009767.1_3018266_3018518_+	NA	NA|260aa|up_4|NC_009767.1_3018835_3019615_-	pfam14344, DUF4397, Domain of unknown function (DUF4397)	NA|346aa|up_3|NC_009767.1_3019878_3020916_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|404aa|up_2|NC_009767.1_3020925_3022137_-	COG4552, Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]	NA|368aa|up_1|NC_009767.1_3022379_3023483_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|345aa|up_0|NC_009767.1_3023824_3024859_+	TIGR03448, mycothiol_MshD, mycothiol synthase	NA|131aa|down_0|NC_009767.1_3031075_3031468_-	pfam05168, HEPN, HEPN domain	NA|117aa|down_1|NC_009767.1_3031451_3031802_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|255aa|down_2|NC_009767.1_3031883_3032648_+	pfam12770, CHAT, CHAT domain	NA|87aa|down_3|NC_009767.1_3033189_3033450_+	pfam03683, UPF0175, Uncharacterized protein family (UPF0175)	NA|165aa|down_4|NC_009767.1_3033442_3033937_+	COG2405, COG2405, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|60aa|down_5|NC_009767.1_3034272_3034452_+	NA	NA|89aa|down_6|NC_009767.1_3034821_3035088_+	NA	NA|310aa|down_7|NC_009767.1_3035120_3036050_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|297aa|down_8|NC_009767.1_3036081_3036972_+	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|201aa|down_9|NC_009767.1_3037143_3037746_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	58	3032727-3032869	49	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	ATAGGACACGGATGAGCGCGGGTGCGACGGATAAGCGCGGATTTGTC	47	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|84aa|up_8|NC_009767.1_3018266_3018518_+,NA|60aa|down_2|NC_009767.1_3034272_3034452_+,NA|89aa|down_3|NC_009767.1_3034821_3035088_+	NA|114aa|up_9|NC_009767.1_3017944_3018286_-	pfam06305, LapA_dom, Lipopolysaccharide assembly protein A domain	NA|84aa|up_8|NC_009767.1_3018266_3018518_+	NA	NA|260aa|up_7|NC_009767.1_3018835_3019615_-	pfam14344, DUF4397, Domain of unknown function (DUF4397)	NA|346aa|up_6|NC_009767.1_3019878_3020916_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|404aa|up_5|NC_009767.1_3020925_3022137_-	COG4552, Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]	NA|368aa|up_4|NC_009767.1_3022379_3023483_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|345aa|up_3|NC_009767.1_3023824_3024859_+	TIGR03448, mycothiol_MshD, mycothiol synthase	NA|131aa|up_2|NC_009767.1_3031075_3031468_-	pfam05168, HEPN, HEPN domain	NA|117aa|up_1|NC_009767.1_3031451_3031802_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|255aa|up_0|NC_009767.1_3031883_3032648_+	pfam12770, CHAT, CHAT domain	NA|87aa|down_0|NC_009767.1_3033189_3033450_+	pfam03683, UPF0175, Uncharacterized protein family (UPF0175)	NA|165aa|down_1|NC_009767.1_3033442_3033937_+	COG2405, COG2405, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|60aa|down_2|NC_009767.1_3034272_3034452_+	NA	NA|89aa|down_3|NC_009767.1_3034821_3035088_+	NA	NA|310aa|down_4|NC_009767.1_3035120_3036050_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|297aa|down_5|NC_009767.1_3036081_3036972_+	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|201aa|down_6|NC_009767.1_3037143_3037746_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|287aa|down_7|NC_009767.1_3037749_3038610_+	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|453aa|down_8|NC_009767.1_3039416_3040775_+	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain	NA|377aa|down_9|NC_009767.1_3042808_3043939_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	59	3046671-3046825	50	CRISPRCasFinder	no	csa3	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Type I-A	GCGGTATCTGCCGTTTGGTCCCGCCAGCATCGAAGACGTGCCGGAGCATCTGGC	54	1	1	3046725-3046771	NC_009767.1_3046917-3046963	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|60aa|up_9|NC_009767.1_3034272_3034452_+,NA|89aa|up_8|NC_009767.1_3034821_3035088_+,NA	NA|60aa|up_9|NC_009767.1_3034272_3034452_+	NA	NA|89aa|up_8|NC_009767.1_3034821_3035088_+	NA	NA|310aa|up_7|NC_009767.1_3035120_3036050_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|297aa|up_6|NC_009767.1_3036081_3036972_+	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|201aa|up_5|NC_009767.1_3037143_3037746_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|287aa|up_4|NC_009767.1_3037749_3038610_+	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|453aa|up_3|NC_009767.1_3039416_3040775_+	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain	NA|377aa|up_2|NC_009767.1_3042808_3043939_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|412aa|up_1|NC_009767.1_3043951_3045187_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|329aa|up_0|NC_009767.1_3045254_3046241_-	pfam08448, PAS_4, PAS fold	NA|729aa|down_0|NC_009767.1_3047441_3049628_+	COG5322, COG5322, Predicted dehydrogenase [General function prediction only]	NA|139aa|down_1|NC_009767.1_3049632_3050049_+	COG3474, COG3474, Cytochrome c2 [Energy production and conversion]	NA|353aa|down_2|NC_009767.1_3050151_3051210_-	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|257aa|down_3|NC_009767.1_3051212_3051983_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|204aa|down_4|NC_009767.1_3052066_3052678_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|327aa|down_5|NC_009767.1_3052833_3053814_+	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins	NA|143aa|down_6|NC_009767.1_3053810_3054239_+	pfam01878, EVE, EVE domain	NA|384aa|down_7|NC_009767.1_3056126_3057278_+	pfam14583, Pectate_lyase22, Oligogalacturonate lyase	NA|605aa|down_8|NC_009767.1_3057304_3059119_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	csa3|112aa|down_9|NC_009767.1_3059332_3059668_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	60	3056042-3056157	51	CRISPRCasFinder	no	csa3	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Type I-A	AGGAGCAATGTCTATGAGCAAAGGGACCGTCTATCCTGCCGAAT	44	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|211aa|down_7|NC_009767.1_3066378_3067011_-,NA|182aa|down_9|NC_009767.1_3069419_3069965_-	NA|412aa|up_9|NC_009767.1_3043951_3045187_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|329aa|up_8|NC_009767.1_3045254_3046241_-	pfam08448, PAS_4, PAS fold	NA|79aa|up_7|NC_009767.1_3046808_3047045_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|729aa|up_6|NC_009767.1_3047441_3049628_+	COG5322, COG5322, Predicted dehydrogenase [General function prediction only]	NA|139aa|up_5|NC_009767.1_3049632_3050049_+	COG3474, COG3474, Cytochrome c2 [Energy production and conversion]	NA|353aa|up_4|NC_009767.1_3050151_3051210_-	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|257aa|up_3|NC_009767.1_3051212_3051983_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|204aa|up_2|NC_009767.1_3052066_3052678_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|327aa|up_1|NC_009767.1_3052833_3053814_+	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins	NA|143aa|up_0|NC_009767.1_3053810_3054239_+	pfam01878, EVE, EVE domain	NA|605aa|down_0|NC_009767.1_3057304_3059119_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	csa3|112aa|down_1|NC_009767.1_3059332_3059668_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|425aa|down_2|NC_009767.1_3059940_3061215_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|164aa|down_3|NC_009767.1_3061382_3061874_-	pfam08592, DUF1772, Domain of unknown function (DUF1772)	NA|160aa|down_4|NC_009767.1_3061892_3062372_-	pfam10027, DUF2269, Predicted integral membrane protein (DUF2269)	NA|324aa|down_5|NC_009767.1_3062475_3063447_+	pfam12852, Cupin_6, Cupin	NA|939aa|down_6|NC_009767.1_3063553_3066370_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|211aa|down_7|NC_009767.1_3066378_3067011_-	NA	NA|676aa|down_8|NC_009767.1_3067342_3069370_+	COG2720, COG2720, Uncharacterized vancomycin resistance protein [Defense mechanisms]	NA|182aa|down_9|NC_009767.1_3069419_3069965_-	NA
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	61	3105999-3106172	52	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	TCTGCACCGGTCTCCCCTCTCCCG	24	0	0	NA	NA	NA	2	2	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|67aa|up_8|NC_009767.1_3098583_3098784_-,NA	NA|175aa|up_9|NC_009767.1_3097144_3097669_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|67aa|up_8|NC_009767.1_3098583_3098784_-	NA	NA|268aa|up_7|NC_009767.1_3098797_3099601_-	TIGR03220, 2-hydroxypenta-24-dienoate_hydratase, 2-oxopent-4-enoate hydratase	NA|486aa|up_6|NC_009767.1_3099582_3101040_-	cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8 member A1-like	NA|245aa|up_5|NC_009767.1_3101036_3101771_-	COG3971, COG3971, 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|71aa|up_4|NC_009767.1_3101754_3101967_-	cd00491, 4Oxalocrotonate_Tautomerase, 4-Oxalocrotonate Tautomerase:  Catalyzes the isomerization of unsaturated ketones	NA|182aa|up_3|NC_009767.1_3101979_3102525_-	pfam01613, Flavin_Reduct, Flavin reductase like domain	NA|337aa|up_2|NC_009767.1_3103017_3104028_-	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	NA|306aa|up_1|NC_009767.1_3104024_3104942_-	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated	NA|259aa|up_0|NC_009767.1_3104923_3105700_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|336aa|down_0|NC_009767.1_3106210_3107218_-	TIGR03211, catechol_2_3, catechol 2,3 dioxygenase	NA|522aa|down_1|NC_009767.1_3107244_3108810_-	TIGR02310, HpaB-2, 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component	NA|104aa|down_2|NC_009767.1_3109253_3109565_+	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|125aa|down_3|NC_009767.1_3109545_3109920_+	COG2361, COG2361, Uncharacterized conserved protein [Function unknown]	NA|370aa|down_4|NC_009767.1_3109946_3111056_+	smart00933, NurA, NurA nuclease	NA|525aa|down_5|NC_009767.1_3111120_3112695_-	pfam14885, GHL15, Hypothetical glycosyl hydrolase family 15	NA|370aa|down_6|NC_009767.1_3113062_3114172_-	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional	NA|350aa|down_7|NC_009767.1_3114181_3115231_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|376aa|down_8|NC_009767.1_3115243_3116371_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|328aa|down_9|NC_009767.1_3116416_3117400_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	62	3185796-3186004	53	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CCTGAACCCTCCCGCGCGCGGGGGG	25	0	0	NA	NA	NA	3	3	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|777aa|up_5|NC_009767.1_3175839_3178170_+,NA|133aa|up_2|NC_009767.1_3180716_3181115_+,NA|1044aa|down_1|NC_009767.1_3187445_3190577_-	NA|440aa|up_9|NC_009767.1_3167708_3169028_-	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|696aa|up_8|NC_009767.1_3169039_3171127_-	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|633aa|up_7|NC_009767.1_3171314_3173213_-	PRK13837, PRK13837, two-component system VirA-like sensor kinase	NA|757aa|up_6|NC_009767.1_3173334_3175605_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|777aa|up_5|NC_009767.1_3175839_3178170_+	NA	NA|420aa|up_4|NC_009767.1_3178176_3179436_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|404aa|up_3|NC_009767.1_3179440_3180652_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|133aa|up_2|NC_009767.1_3180716_3181115_+	NA	NA|529aa|up_1|NC_009767.1_3181923_3183510_-	cd06830, PLPDE_III_ADC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase	NA|489aa|up_0|NC_009767.1_3184110_3185577_-	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins	NA|384aa|down_0|NC_009767.1_3186248_3187400_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|1044aa|down_1|NC_009767.1_3187445_3190577_-	NA	NA|311aa|down_2|NC_009767.1_3191173_3192106_+	PRK06606, PRK06606, branched-chain amino acid transaminase	NA|386aa|down_3|NC_009767.1_3192108_3193266_+	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|206aa|down_4|NC_009767.1_3193274_3193892_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|890aa|down_5|NC_009767.1_3194338_3197008_+	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional	NA|415aa|down_6|NC_009767.1_3197789_3199034_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|392aa|down_7|NC_009767.1_3199456_3200632_+	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|436aa|down_8|NC_009767.1_3201010_3202318_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|309aa|down_9|NC_009767.1_3202403_3203330_+	COG1957, URH1, Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	63	3311351-3311549	54	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GGTATCACCCCGTGCCTCGCGCAGATTCCTCGCTGCGCGCGGAATGACA	49	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|250aa|up_9|NC_009767.1_3304633_3305383_+,NA|114aa|up_6|NC_009767.1_3307708_3308050_+,NA|101aa|up_0|NC_009767.1_3310714_3311017_+,NA|93aa|down_6|NC_009767.1_3330155_3330434_+,NA|210aa|down_7|NC_009767.1_3330433_3331063_+	NA|250aa|up_9|NC_009767.1_3304633_3305383_+	NA	NA|349aa|up_8|NC_009767.1_3305388_3306435_+	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|335aa|up_7|NC_009767.1_3306564_3307569_-	cd01172, RfaE_like, RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose	NA|114aa|up_6|NC_009767.1_3307708_3308050_+	NA	NA|200aa|up_5|NC_009767.1_3308055_3308655_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|194aa|up_4|NC_009767.1_3308789_3309371_+	PRK11922, PRK11922, RNA polymerase sigma factor; Provisional	NA|87aa|up_3|NC_009767.1_3309389_3309650_+	pfam13490, zf-HC2, Putative zinc-finger	NA|201aa|up_2|NC_009767.1_3309693_3310296_+	PRK11922, PRK11922, RNA polymerase sigma factor; Provisional	NA|104aa|up_1|NC_009767.1_3310327_3310639_+	pfam13490, zf-HC2, Putative zinc-finger	NA|101aa|up_0|NC_009767.1_3310714_3311017_+	NA	NA|3823aa|down_0|NC_009767.1_3311718_3323187_-	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily	NA|548aa|down_1|NC_009767.1_3323721_3325365_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|251aa|down_2|NC_009767.1_3325606_3326359_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|563aa|down_3|NC_009767.1_3326374_3328063_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|415aa|down_4|NC_009767.1_3328179_3329424_-	pfam13531, SBP_bac_11, Bacterial extracellular solute-binding protein	NA|117aa|down_5|NC_009767.1_3329680_3330031_+	cd03697, EFTU_II, Domain II of elongation factor Tu	NA|93aa|down_6|NC_009767.1_3330155_3330434_+	NA	NA|210aa|down_7|NC_009767.1_3330433_3331063_+	NA	NA|363aa|down_8|NC_009767.1_3332274_3333363_-	pfam01170, UPF0020, Putative RNA methylase family UPF0020	NA|463aa|down_9|NC_009767.1_3333364_3334753_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	64	3331285-3331381	55	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	AAAGCCCTCGCTAAGCACGTGCAAG	25	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|101aa|up_8|NC_009767.1_3310714_3311017_+,NA|93aa|up_1|NC_009767.1_3330155_3330434_+,NA|210aa|up_0|NC_009767.1_3330433_3331063_+,NA|173aa|down_6|NC_009767.1_3340944_3341463_-	NA|104aa|up_9|NC_009767.1_3310327_3310639_+	pfam13490, zf-HC2, Putative zinc-finger	NA|101aa|up_8|NC_009767.1_3310714_3311017_+	NA	NA|3823aa|up_7|NC_009767.1_3311718_3323187_-	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily	NA|548aa|up_6|NC_009767.1_3323721_3325365_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|251aa|up_5|NC_009767.1_3325606_3326359_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|563aa|up_4|NC_009767.1_3326374_3328063_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|415aa|up_3|NC_009767.1_3328179_3329424_-	pfam13531, SBP_bac_11, Bacterial extracellular solute-binding protein	NA|117aa|up_2|NC_009767.1_3329680_3330031_+	cd03697, EFTU_II, Domain II of elongation factor Tu	NA|93aa|up_1|NC_009767.1_3330155_3330434_+	NA	NA|210aa|up_0|NC_009767.1_3330433_3331063_+	NA	NA|363aa|down_0|NC_009767.1_3332274_3333363_-	pfam01170, UPF0020, Putative RNA methylase family UPF0020	NA|463aa|down_1|NC_009767.1_3333364_3334753_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|929aa|down_2|NC_009767.1_3335020_3337807_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|77aa|down_3|NC_009767.1_3337956_3338187_-	TIGR00575, DNA_ligase, DNA ligase, NAD-dependent	NA|606aa|down_4|NC_009767.1_3338656_3340474_-	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13)	NA|144aa|down_5|NC_009767.1_3340497_3340929_-	COG2510, COG2510, Predicted membrane protein [Function unknown]	NA|173aa|down_6|NC_009767.1_3340944_3341463_-	NA	NA|349aa|down_7|NC_009767.1_3341472_3342519_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|803aa|down_8|NC_009767.1_3342526_3344935_-	TIGR01535, glucan_glucosid, glucan 1,4-alpha-glucosidase	NA|371aa|down_9|NC_009767.1_3344931_3346044_-	cd08230, glucose_DH, Glucose dehydrogenase
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	65	3353184-3353289	56	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CCGCAGAGAGAACACGACGTGCGAGAAGTGTTCAAT	36	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|71aa|down_2|NC_009767.1_3356495_3356708_-,NA|78aa|down_4|NC_009767.1_3363775_3364009_+	NA|803aa|up_9|NC_009767.1_3342526_3344935_-	TIGR01535, glucan_glucosid, glucan 1,4-alpha-glucosidase	NA|371aa|up_8|NC_009767.1_3344931_3346044_-	cd08230, glucose_DH, Glucose dehydrogenase	NA|431aa|up_7|NC_009767.1_3346062_3347355_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|59aa|up_6|NC_009767.1_3347555_3347732_-	cd09158, PLDc_EcCLS_like_2, Catalytic domain, repeat 2, of Escherichia coli cardiolipin synthase and similar proteins	NA|188aa|up_5|NC_009767.1_3348172_3348736_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain	NA|175aa|up_4|NC_009767.1_3348937_3349462_-	pfam06210, DUF1003, Protein of unknown function (DUF1003)	NA|254aa|up_3|NC_009767.1_3349493_3350255_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|90aa|up_2|NC_009767.1_3350263_3350533_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|470aa|up_1|NC_009767.1_3350610_3352020_-	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|233aa|up_0|NC_009767.1_3352006_3352705_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|141aa|down_0|NC_009767.1_3355369_3355792_+	TIGR02249, Integrase/recombinase_E2_protein	NA|118aa|down_1|NC_009767.1_3355689_3356043_+	TIGR02249, Integrase/recombinase_E2_protein	NA|71aa|down_2|NC_009767.1_3356495_3356708_-	NA	NA|2196aa|down_3|NC_009767.1_3357152_3363740_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|78aa|down_4|NC_009767.1_3363775_3364009_+	NA	NA|845aa|down_5|NC_009767.1_3364597_3367132_-	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|278aa|down_6|NC_009767.1_3367300_3368134_+	TIGR03729, acc_ester, putative phosphoesterase	NA|267aa|down_7|NC_009767.1_3368212_3369013_-	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|269aa|down_8|NC_009767.1_3369061_3369868_-	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|89aa|down_9|NC_009767.1_3369925_3370192_+	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	66	3356678-3356788	57	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	TATGGCGGATGTAATCATCGTTGATGGTCATTGTAA	36	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|78aa|down_1|NC_009767.1_3363775_3364009_+,NA|98aa|down_9|NC_009767.1_3372018_3372312_-	NA|431aa|up_9|NC_009767.1_3346062_3347355_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|59aa|up_8|NC_009767.1_3347555_3347732_-	cd09158, PLDc_EcCLS_like_2, Catalytic domain, repeat 2, of Escherichia coli cardiolipin synthase and similar proteins	NA|188aa|up_7|NC_009767.1_3348172_3348736_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain	NA|175aa|up_6|NC_009767.1_3348937_3349462_-	pfam06210, DUF1003, Protein of unknown function (DUF1003)	NA|254aa|up_5|NC_009767.1_3349493_3350255_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|90aa|up_4|NC_009767.1_3350263_3350533_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|470aa|up_3|NC_009767.1_3350610_3352020_-	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|233aa|up_2|NC_009767.1_3352006_3352705_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|141aa|up_1|NC_009767.1_3355369_3355792_+	TIGR02249, Integrase/recombinase_E2_protein	NA|118aa|up_0|NC_009767.1_3355689_3356043_+	TIGR02249, Integrase/recombinase_E2_protein	NA|2196aa|down_0|NC_009767.1_3357152_3363740_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|78aa|down_1|NC_009767.1_3363775_3364009_+	NA	NA|845aa|down_2|NC_009767.1_3364597_3367132_-	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|278aa|down_3|NC_009767.1_3367300_3368134_+	TIGR03729, acc_ester, putative phosphoesterase	NA|267aa|down_4|NC_009767.1_3368212_3369013_-	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|269aa|down_5|NC_009767.1_3369061_3369868_-	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|89aa|down_6|NC_009767.1_3369925_3370192_+	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only]	NA|144aa|down_7|NC_009767.1_3370207_3370639_+	sd00006, TPR, Tetratricopeptide repeat	NA|401aa|down_8|NC_009767.1_3370640_3371843_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|98aa|down_9|NC_009767.1_3372018_3372312_-	NA
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	67	3447453-3453071	58,9,8,9,10,11,12	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR,PILER-CR,PILER-CR	no	WYL,cas2,cas1,RT,csx15,csx1	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Unclear	GTTTCAATCCCCTTCATGGCGGGGCTTTTGTTTTTTT,GTTTCAATCCCCTTCATGGCGGGGCTTTTGTTTTTTT,AAAAAAACAAAAGCCCCGCCATGAAGGGGATTGAAAC,CGGAAAAAAACAAAAGCCCCGCCATGAAGGGGATTGAAAC,AAAAAAACAAAAGCCCCGCCATGAAGGGGATTGAAAC,TCCGCCTCAAAAAAACAAAAGCCCCGCCATGAAGGGGATTGAAAC,AAAAAAACAAAAGCCCCGCCATGAAGGGGATTGAAAC	37,37,37,40,37,45,37	0	0	NA	NA	NA:NA:NA:NA:NA:NA:NA	75,75,65,65,65,65,65	75	Unclear	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|63aa|down_7|NC_009767.1_3463003_3463192_-	NA|700aa|up_9|NC_009767.1_3432371_3434471_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|148aa|up_8|NC_009767.1_3434436_3434880_+	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains	NA|638aa|up_7|NC_009767.1_3434894_3436808_+	PRK13557, PRK13557, histidine kinase; Provisional	NA|373aa|up_6|NC_009767.1_3437134_3438253_+	cd19999, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate binding protein such as CUT2	NA|506aa|up_5|NC_009767.1_3438257_3439775_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|323aa|up_4|NC_009767.1_3439771_3440740_+	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins	NA|321aa|up_3|NC_009767.1_3440736_3441699_+	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins	NA|681aa|up_2|NC_009767.1_3441819_3443862_+	pfam13200, DUF4015, Putative glycosyl hydrolase domain	NA|793aa|up_1|NC_009767.1_3443933_3446312_+	cd06583, PGRP, Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls	NA|257aa|up_0|NC_009767.1_3446330_3447101_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	WYL|683aa|down_0|NC_009767.1_3453229_3455278_+	pfam13280, WYL, WYL domain	cas2|92aa|down_1|NC_009767.1_3455477_3455753_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|778aa|down_2|NC_009767.1_3455932_3458266_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	cas1|333aa|down_3|NC_009767.1_3458386_3459385_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	RT|448aa|down_4|NC_009767.1_3459723_3461067_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|487aa|down_5|NC_009767.1_3461082_3462543_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|149aa|down_6|NC_009767.1_3462557_3463004_-	cd09279, RNase_HI_like, RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI	NA|63aa|down_7|NC_009767.1_3463003_3463192_-	NA	csx15|126aa|down_8|NC_009767.1_3463968_3464346_-	cd09766, Csx15_I-U, CRISPR/Cas system-associated protein Csx15	csx1|218aa|down_9|NC_009767.1_3464342_3464996_-	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	68	3463379-3463477	59	CRISPRCasFinder	no	WYL,cas2,cas1,RT,csx15,csx1	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Unclear	AACGTTCCCGGCAGAGACGTTGC	23	0	0	NA	NA	NA	1	1	Unclear	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|63aa|up_0|NC_009767.1_3463003_3463192_-,NA|250aa|down_6|NC_009767.1_3470460_3471210_-	NA|793aa|up_9|NC_009767.1_3443933_3446312_+	cd06583, PGRP, Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls	NA|257aa|up_8|NC_009767.1_3446330_3447101_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	WYL|683aa|up_7|NC_009767.1_3453229_3455278_+	pfam13280, WYL, WYL domain	cas2|92aa|up_6|NC_009767.1_3455477_3455753_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|778aa|up_5|NC_009767.1_3455932_3458266_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	cas1|333aa|up_4|NC_009767.1_3458386_3459385_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	RT|448aa|up_3|NC_009767.1_3459723_3461067_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|487aa|up_2|NC_009767.1_3461082_3462543_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|149aa|up_1|NC_009767.1_3462557_3463004_-	cd09279, RNase_HI_like, RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI	NA|63aa|up_0|NC_009767.1_3463003_3463192_-	NA	csx15|126aa|down_0|NC_009767.1_3463968_3464346_-	cd09766, Csx15_I-U, CRISPR/Cas system-associated protein Csx15	csx1|218aa|down_1|NC_009767.1_3464342_3464996_-	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	WYL|349aa|down_2|NC_009767.1_3465082_3466129_-	pfam13280, WYL, WYL domain	csx1|466aa|down_3|NC_009767.1_3466290_3467688_-	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|191aa|down_4|NC_009767.1_3467894_3468467_-	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases	NA|247aa|down_5|NC_009767.1_3469716_3470457_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|250aa|down_6|NC_009767.1_3470460_3471210_-	NA	NA|388aa|down_7|NC_009767.1_3471206_3472370_-	cd03814, GT4-like, glycosyltransferase family 4 proteins	NA|315aa|down_8|NC_009767.1_3472415_3473360_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|801aa|down_9|NC_009767.1_3473525_3475928_+	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	69	3683596-3683697	60	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	ACGCTCAATCGCGTCACCTTCGAG	24	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|133aa|up_7|NC_009767.1_3674567_3674966_-,NA	NA|193aa|up_9|NC_009767.1_3672056_3672635_-	pfam14065, DUF4255, Protein of unknown function (DUF4255)	NA|528aa|up_8|NC_009767.1_3672924_3674508_+	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|133aa|up_7|NC_009767.1_3674567_3674966_-	NA	NA|140aa|up_6|NC_009767.1_3675131_3675551_-	pfam05025, RbsD_FucU, RbsD / FucU transport protein family	NA|98aa|up_5|NC_009767.1_3675624_3675918_-	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|288aa|up_4|NC_009767.1_3675932_3676796_-	PRK14297, PRK14297, molecular chaperone DnaJ	NA|397aa|up_3|NC_009767.1_3677270_3678461_-	cd13590, PBP2_PotD_PotF_like, The periplasmic-binding component of ABC transporters involved in uptake of polyamines; possess the type 2 periplasmic binding fold	NA|287aa|up_2|NC_009767.1_3679326_3680187_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|303aa|up_1|NC_009767.1_3680334_3681243_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|373aa|up_0|NC_009767.1_3681258_3682377_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|192aa|down_0|NC_009767.1_3685692_3686268_+	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain	NA|125aa|down_1|NC_009767.1_3686595_3686970_+	PRK14215, PRK14215, fluoride efflux transporter CrcB	NA|429aa|down_2|NC_009767.1_3686984_3688271_+	pfam02641, DUF190, Uncharacterized ACR, COG1993	NA|560aa|down_3|NC_009767.1_3688501_3690181_+	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|620aa|down_4|NC_009767.1_3690306_3692166_+	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP)	NA|373aa|down_5|NC_009767.1_3692384_3693503_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|282aa|down_6|NC_009767.1_3693872_3694718_-	COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]	NA|962aa|down_7|NC_009767.1_3694857_3697743_+	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|1062aa|down_8|NC_009767.1_3698491_3701677_+	COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and metabolism]	NA|292aa|down_9|NC_009767.1_3702294_3703170_+	cd09989, Arginase, Arginase family
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	70	3685459-3685575	61	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GCGCCCCGGTGTGGGCGCCAGACGAAGAAGGCACGTGATCCGTTG	45	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|133aa|up_8|NC_009767.1_3674567_3674966_-,NA	NA|528aa|up_9|NC_009767.1_3672924_3674508_+	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|133aa|up_8|NC_009767.1_3674567_3674966_-	NA	NA|140aa|up_7|NC_009767.1_3675131_3675551_-	pfam05025, RbsD_FucU, RbsD / FucU transport protein family	NA|98aa|up_6|NC_009767.1_3675624_3675918_-	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|288aa|up_5|NC_009767.1_3675932_3676796_-	PRK14297, PRK14297, molecular chaperone DnaJ	NA|397aa|up_4|NC_009767.1_3677270_3678461_-	cd13590, PBP2_PotD_PotF_like, The periplasmic-binding component of ABC transporters involved in uptake of polyamines; possess the type 2 periplasmic binding fold	NA|287aa|up_3|NC_009767.1_3679326_3680187_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|303aa|up_2|NC_009767.1_3680334_3681243_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|373aa|up_1|NC_009767.1_3681258_3682377_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|760aa|up_0|NC_009767.1_3683136_3685416_+	NF012200, choice_anch_D, choice-of-anchor D domain-containing protein	NA|192aa|down_0|NC_009767.1_3685692_3686268_+	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain	NA|125aa|down_1|NC_009767.1_3686595_3686970_+	PRK14215, PRK14215, fluoride efflux transporter CrcB	NA|429aa|down_2|NC_009767.1_3686984_3688271_+	pfam02641, DUF190, Uncharacterized ACR, COG1993	NA|560aa|down_3|NC_009767.1_3688501_3690181_+	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|620aa|down_4|NC_009767.1_3690306_3692166_+	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP)	NA|373aa|down_5|NC_009767.1_3692384_3693503_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|282aa|down_6|NC_009767.1_3693872_3694718_-	COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]	NA|962aa|down_7|NC_009767.1_3694857_3697743_+	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|1062aa|down_8|NC_009767.1_3698491_3701677_+	COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and metabolism]	NA|292aa|down_9|NC_009767.1_3702294_3703170_+	cd09989, Arginase, Arginase family
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	71	3707693-3707816	62	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CCTGCTGCCAGATGTTGCGACATCGTTGCCTGTGGTATCATAACC	45	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|134aa|down_7|NC_009767.1_3715463_3715865_-,NA|77aa|down_8|NC_009767.1_3716080_3716311_-,NA|75aa|down_9|NC_009767.1_3718409_3718634_+	NA|620aa|up_9|NC_009767.1_3690306_3692166_+	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP)	NA|373aa|up_8|NC_009767.1_3692384_3693503_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|282aa|up_7|NC_009767.1_3693872_3694718_-	COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]	NA|962aa|up_6|NC_009767.1_3694857_3697743_+	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|1062aa|up_5|NC_009767.1_3698491_3701677_+	COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and metabolism]	NA|292aa|up_4|NC_009767.1_3702294_3703170_+	cd09989, Arginase, Arginase family	NA|76aa|up_3|NC_009767.1_3703324_3703552_+	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|95aa|up_2|NC_009767.1_3703517_3703802_+	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|300aa|up_1|NC_009767.1_3703854_3704754_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|727aa|up_0|NC_009767.1_3705243_3707424_+	cd00102, IPT, Immunoglobulin-like fold, Plexins, Transcription factors (IPT)	NA|397aa|down_0|NC_009767.1_3707848_3709039_+	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters	NA|483aa|down_1|NC_009767.1_3709079_3710528_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|270aa|down_2|NC_009767.1_3710884_3711694_+	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|147aa|down_3|NC_009767.1_3711730_3712171_+	pfam13828, DUF4190, Domain of unknown function (DUF4190)	NA|478aa|down_4|NC_009767.1_3712167_3713601_+	PRK07486, PRK07486, amidase; Provisional	NA|70aa|down_5|NC_009767.1_3713985_3714195_+	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	NA|161aa|down_6|NC_009767.1_3714770_3715253_-	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	NA|134aa|down_7|NC_009767.1_3715463_3715865_-	NA	NA|77aa|down_8|NC_009767.1_3716080_3716311_-	NA	NA|75aa|down_9|NC_009767.1_3718409_3718634_+	NA
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	72	3710648-3710763	63	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	TCATTCGCACAACACTGCCGGGGCGCTGCGGGCTAAAGCCC	41	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|134aa|down_5|NC_009767.1_3715463_3715865_-,NA|77aa|down_6|NC_009767.1_3716080_3716311_-,NA|75aa|down_7|NC_009767.1_3718409_3718634_+	NA|282aa|up_9|NC_009767.1_3693872_3694718_-	COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]	NA|962aa|up_8|NC_009767.1_3694857_3697743_+	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|1062aa|up_7|NC_009767.1_3698491_3701677_+	COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and metabolism]	NA|292aa|up_6|NC_009767.1_3702294_3703170_+	cd09989, Arginase, Arginase family	NA|76aa|up_5|NC_009767.1_3703324_3703552_+	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|95aa|up_4|NC_009767.1_3703517_3703802_+	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|300aa|up_3|NC_009767.1_3703854_3704754_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|727aa|up_2|NC_009767.1_3705243_3707424_+	cd00102, IPT, Immunoglobulin-like fold, Plexins, Transcription factors (IPT)	NA|397aa|up_1|NC_009767.1_3707848_3709039_+	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters	NA|483aa|up_0|NC_009767.1_3709079_3710528_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|270aa|down_0|NC_009767.1_3710884_3711694_+	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|147aa|down_1|NC_009767.1_3711730_3712171_+	pfam13828, DUF4190, Domain of unknown function (DUF4190)	NA|478aa|down_2|NC_009767.1_3712167_3713601_+	PRK07486, PRK07486, amidase; Provisional	NA|70aa|down_3|NC_009767.1_3713985_3714195_+	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	NA|161aa|down_4|NC_009767.1_3714770_3715253_-	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	NA|134aa|down_5|NC_009767.1_3715463_3715865_-	NA	NA|77aa|down_6|NC_009767.1_3716080_3716311_-	NA	NA|75aa|down_7|NC_009767.1_3718409_3718634_+	NA	NA|111aa|down_8|NC_009767.1_3718618_3718951_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|90aa|down_9|NC_009767.1_3719371_3719641_+	pfam10387, DUF2442, Protein of unknown function (DUF2442)
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	73	3771145-3771236	64	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GCCGCCCGCGCTTCGGCTTCCGCCCGCGCCGC	32	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|625aa|up_6|NC_009767.1_3762846_3764721_+,NA|176aa|up_0|NC_009767.1_3770521_3771049_-,NA|194aa|down_3|NC_009767.1_3775119_3775701_-	NA|183aa|up_9|NC_009767.1_3760605_3761154_+	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|394aa|up_8|NC_009767.1_3761204_3762386_+	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit	NA|81aa|up_7|NC_009767.1_3762607_3762850_+	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|625aa|up_6|NC_009767.1_3762846_3764721_+	NA	NA|308aa|up_5|NC_009767.1_3764953_3765877_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|552aa|up_4|NC_009767.1_3765981_3767637_-	COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism]	NA|86aa|up_3|NC_009767.1_3767751_3768009_-	pfam02325, YGGT, YGGT family	NA|448aa|up_2|NC_009767.1_3768162_3769506_-	pfam00815, Histidinol_dh, Histidinol dehydrogenase	NA|339aa|up_1|NC_009767.1_3769505_3770522_-	cd13593, PBP2_HisGL3, The catalytic domain of hexameric long form HisGL3; contains the type 2 periplasmic binding protein fold	NA|176aa|up_0|NC_009767.1_3770521_3771049_-	NA	NA|266aa|down_0|NC_009767.1_3772023_3772821_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|420aa|down_1|NC_009767.1_3772891_3774151_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|319aa|down_2|NC_009767.1_3774147_3775104_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|194aa|down_3|NC_009767.1_3775119_3775701_-	NA	NA|292aa|down_4|NC_009767.1_3776014_3776890_-	pfam13559, DUF4129, Domain of unknown function (DUF4129)	NA|485aa|down_5|NC_009767.1_3776893_3778348_-	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	NA|577aa|down_6|NC_009767.1_3778448_3780179_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|318aa|down_7|NC_009767.1_3780226_3781180_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|346aa|down_8|NC_009767.1_3781213_3782251_+	cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII	NA|208aa|down_9|NC_009767.1_3782336_3782960_+	PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	74	3818602-3818697	65	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GCCTCGAACACCACATCGCAGAA	23	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|695aa|up_8|NC_009767.1_3807332_3809417_+,NA|126aa|down_0|NC_009767.1_3818849_3819227_-,NA|808aa|down_2|NC_009767.1_3821057_3823481_+,NA|98aa|down_7|NC_009767.1_3830422_3830716_-	NA|332aa|up_9|NC_009767.1_3806279_3807275_+	cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases	NA|695aa|up_8|NC_009767.1_3807332_3809417_+	NA	NA|692aa|up_7|NC_009767.1_3809422_3811498_-	cd07562, Peptidase_S41_TRI, Tricorn protease; serine protease family S41	NA|271aa|up_6|NC_009767.1_3812770_3813583_-	cd01144, BtuF, Cobalamin binding protein BtuF	NA|132aa|up_5|NC_009767.1_3813728_3814124_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|298aa|up_4|NC_009767.1_3814120_3815014_-	cd01144, BtuF, Cobalamin binding protein BtuF	NA|314aa|up_3|NC_009767.1_3815261_3816203_+	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|109aa|up_2|NC_009767.1_3816547_3816874_+	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|232aa|up_1|NC_009767.1_3816897_3817593_+	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|280aa|up_0|NC_009767.1_3817608_3818448_+	pfam01972, SDH_sah, Serine dehydrogenase proteinase	NA|126aa|down_0|NC_009767.1_3818849_3819227_-	NA	NA|407aa|down_1|NC_009767.1_3819275_3820496_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|808aa|down_2|NC_009767.1_3821057_3823481_+	NA	NA|168aa|down_3|NC_009767.1_3823662_3824166_-	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]	NA|81aa|down_4|NC_009767.1_3824315_3824558_+	smart00834, CxxC_CXXC_SSSS, Putative regulatory protein	NA|370aa|down_5|NC_009767.1_3824588_3825698_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|995aa|down_6|NC_009767.1_3826017_3829002_-	pfam10162, G8, G8 domain	NA|98aa|down_7|NC_009767.1_3830422_3830716_-	NA	NA|99aa|down_8|NC_009767.1_3830684_3830981_-	pfam04365, BrnT_toxin, Ribonuclease toxin, BrnT, of type II toxin-antitoxin system	NA|686aa|down_9|NC_009767.1_3831290_3833348_-	PRK12999, PRK12999, pyruvate carboxylase; Reviewed
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	75	3864784-3864887	66	CRISPRCasFinder	no	cas3	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Unclear	CCAGGGGAGGGCAGGTCTCAGACC	24	0	0	NA	NA	NA	1	1	Unclear	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|66aa|up_6|NC_009767.1_3857897_3858095_-,NA|71aa|up_2|NC_009767.1_3860675_3860888_-,NA|70aa|down_3|NC_009767.1_3866606_3866816_-	NA|228aa|up_9|NC_009767.1_3853935_3854619_+	TIGR01451, unnamed_protein_product, conserved repeat domain	NA|411aa|up_8|NC_009767.1_3854883_3856116_+	TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily	NA|349aa|up_7|NC_009767.1_3856646_3857693_+	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	NA|66aa|up_6|NC_009767.1_3857897_3858095_-	NA	NA|48aa|up_5|NC_009767.1_3858169_3858313_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|550aa|up_4|NC_009767.1_3858578_3860228_+	pfam04932, Wzy_C, O-Antigen ligase	NA|147aa|up_3|NC_009767.1_3860248_3860689_-	cd18692, PIN_VapC-like, uncharacterized subfamily of the VapC-like nuclease family of the PIN domain superfamily	NA|71aa|up_2|NC_009767.1_3860675_3860888_-	NA	NA|666aa|up_1|NC_009767.1_3860977_3862975_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|560aa|up_0|NC_009767.1_3863086_3864766_+	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|235aa|down_0|NC_009767.1_3864906_3865611_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|125aa|down_1|NC_009767.1_3865624_3865999_-	cd13921, Amicyanin, Amicyanin is a type I blue copper protein that plays an essential role in electron transfer	NA|198aa|down_2|NC_009767.1_3866002_3866596_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|70aa|down_3|NC_009767.1_3866606_3866816_-	NA	NA|125aa|down_4|NC_009767.1_3866865_3867240_+	COG0633, Fdx, Ferredoxin [Energy production and conversion]	NA|73aa|down_5|NC_009767.1_3867843_3868062_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	cas3|858aa|down_6|NC_009767.1_3868306_3870880_-	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|250aa|down_7|NC_009767.1_3871145_3871895_+	PRK15489, nfrB, glycosyl transferase family protein	NA|218aa|down_8|NC_009767.1_3872570_3873224_+	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p	NA|316aa|down_9|NC_009767.1_3873300_3874248_-	cd03401, SPFH_prohibitin, Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	76	3868074-3868179	67	CRISPRCasFinder	no	cas3	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Unclear	CAGCGCTTTTTCGAGCGCAGCGACAACCTCACCAGG	36	0	0	NA	NA	NA	1	1	Unclear	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|71aa|up_8|NC_009767.1_3860675_3860888_-,NA|70aa|up_2|NC_009767.1_3866606_3866816_-,NA|56aa|down_7|NC_009767.1_3879681_3879849_+	NA|147aa|up_9|NC_009767.1_3860248_3860689_-	cd18692, PIN_VapC-like, uncharacterized subfamily of the VapC-like nuclease family of the PIN domain superfamily	NA|71aa|up_8|NC_009767.1_3860675_3860888_-	NA	NA|666aa|up_7|NC_009767.1_3860977_3862975_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|560aa|up_6|NC_009767.1_3863086_3864766_+	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|235aa|up_5|NC_009767.1_3864906_3865611_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|125aa|up_4|NC_009767.1_3865624_3865999_-	cd13921, Amicyanin, Amicyanin is a type I blue copper protein that plays an essential role in electron transfer	NA|198aa|up_3|NC_009767.1_3866002_3866596_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|70aa|up_2|NC_009767.1_3866606_3866816_-	NA	NA|125aa|up_1|NC_009767.1_3866865_3867240_+	COG0633, Fdx, Ferredoxin [Energy production and conversion]	NA|73aa|up_0|NC_009767.1_3867843_3868062_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	cas3|858aa|down_0|NC_009767.1_3868306_3870880_-	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|250aa|down_1|NC_009767.1_3871145_3871895_+	PRK15489, nfrB, glycosyl transferase family protein	NA|218aa|down_2|NC_009767.1_3872570_3873224_+	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p	NA|316aa|down_3|NC_009767.1_3873300_3874248_-	cd03401, SPFH_prohibitin, Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|576aa|down_4|NC_009767.1_3874744_3876472_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|130aa|down_5|NC_009767.1_3876486_3876876_-	pfam12158, DUF3592, Protein of unknown function (DUF3592)	NA|697aa|down_6|NC_009767.1_3876887_3878978_-	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|56aa|down_7|NC_009767.1_3879681_3879849_+	NA	NA|565aa|down_8|NC_009767.1_3879912_3881607_+	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|348aa|down_9|NC_009767.1_3881708_3882752_-	pfam01170, UPF0020, Putative RNA methylase family UPF0020
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	77	3983059-3983165	68	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GAACATTGAACGTTGCGCACCGGCAGGCGCGC	32	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|67aa|down_6|NC_009767.1_3990828_3991029_-	NA|501aa|up_9|NC_009767.1_3968909_3970412_+	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|274aa|up_8|NC_009767.1_3970411_3971233_+	PRK06181, PRK06181, SDR family oxidoreductase	NA|194aa|up_7|NC_009767.1_3971623_3972205_+	pfam16321, Ribosom_S30AE_C, Sigma 54 modulation/S30EA ribosomal protein C-terminus	NA|278aa|up_6|NC_009767.1_3972220_3973054_-	cd07361, MEMO_like, Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility	NA|783aa|up_5|NC_009767.1_3973704_3976053_+	cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2	NA|340aa|up_4|NC_009767.1_3976291_3977311_-	cd12822, TmCorA-like, Thermotoga maritima CorA-like family	NA|221aa|up_3|NC_009767.1_3977312_3977975_-	PRK09496, trkA, Trk system potassium transporter TrkA	NA|215aa|up_2|NC_009767.1_3977990_3978635_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|314aa|up_1|NC_009767.1_3978644_3979586_-	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional	NA|456aa|up_0|NC_009767.1_3981383_3982751_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|617aa|down_0|NC_009767.1_3983274_3985125_-	pfam16927, HisKA_7TM, N-terminal 7TM region of histidine kinase	NA|125aa|down_1|NC_009767.1_3985240_3985615_-	cd17548, REC_DivK-like, phosphoacceptor receiver (REC) domain of DivK and similar proteins	NA|293aa|down_2|NC_009767.1_3985772_3986651_+	cd16344, LMWPAP, low molecular weight protein arginine phosphatase	NA|227aa|down_3|NC_009767.1_3986947_3987628_+	cd03498, SQR_TypeB_2_TM, Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum	NA|657aa|down_4|NC_009767.1_3987693_3989664_+	PRK07573, sdhA, fumarate reductase/succinate dehydrogenase flavoprotein subunit	NA|250aa|down_5|NC_009767.1_3989757_3990507_+	PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated	NA|67aa|down_6|NC_009767.1_3990828_3991029_-	NA	NA|817aa|down_7|NC_009767.1_3991573_3994024_+	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|436aa|down_8|NC_009767.1_3993999_3995307_-	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|315aa|down_9|NC_009767.1_3995303_3996248_-	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	78	4059934-4060039	69	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GAGGTCAGGGGTTCGAGCCCCCTC	24	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA	NA|456aa|up_9|NC_009767.1_4044112_4045480_-	pfam07593, UnbV_ASPIC, ASPIC and UnbV	NA|282aa|up_8|NC_009767.1_4045515_4046361_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|1069aa|up_7|NC_009767.1_4046547_4049754_+	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]	NA|593aa|up_6|NC_009767.1_4050051_4051830_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|585aa|up_5|NC_009767.1_4051826_4053581_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|269aa|up_4|NC_009767.1_4054028_4054835_+	pfam17248, DUF5317, Family of unknown function (DUF5317)	NA|398aa|up_3|NC_009767.1_4054932_4056126_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|178aa|up_2|NC_009767.1_4056133_4056667_-	pfam04024, PspC, PspC domain	NA|368aa|up_1|NC_009767.1_4056763_4057867_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|541aa|up_0|NC_009767.1_4057935_4059558_-	TIGR04214, conserved_hypothetical_protein, CSLREA domain	NA|330aa|down_0|NC_009767.1_4060133_4061123_+	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members	NA|201aa|down_1|NC_009767.1_4061268_4061871_-	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains	NA|1188aa|down_2|NC_009767.1_4061867_4065431_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|920aa|down_3|NC_009767.1_4065427_4068187_-	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|128aa|down_4|NC_009767.1_4068587_4068971_+	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|237aa|down_5|NC_009767.1_4069068_4069779_+	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan	NA|235aa|down_6|NC_009767.1_4069775_4070480_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|382aa|down_7|NC_009767.1_4070828_4071974_+	cd03814, GT4-like, glycosyltransferase family 4 proteins	NA|241aa|down_8|NC_009767.1_4071970_4072693_+	cd07432, PHP_HisPPase, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase	NA|442aa|down_9|NC_009767.1_4073035_4074361_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	79	4145264-4145375	70	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	AGTAGTGACGGTCACCTGGGATTGGAGAAAGGAGAGAC	38	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA	NA|972aa|up_9|NC_009767.1_4123429_4126345_-	cd07302, CHD, cyclase homology domain	NA|128aa|up_8|NC_009767.1_4127040_4127424_-	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|283aa|up_7|NC_009767.1_4127781_4128630_+	pfam01832, Glucosaminidase, Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA|365aa|up_6|NC_009767.1_4128954_4130049_+	PRK08651, PRK08651, succinyl-diaminopimelate desuccinylase; Reviewed	NA|395aa|up_5|NC_009767.1_4130455_4131640_-	pfam16292, DUF4938, Domain of unknown function (DUF4938)	NA|539aa|up_4|NC_009767.1_4136572_4138189_+	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|602aa|up_3|NC_009767.1_4138417_4140223_-	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only]	NA|639aa|up_2|NC_009767.1_4140283_4142200_-	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|347aa|up_1|NC_009767.1_4142638_4143679_+	PRK07409, PRK07409, threonine synthase; Validated	NA|468aa|up_0|NC_009767.1_4143698_4145102_+	PRK06291, PRK06291, aspartate kinase; Provisional	NA|353aa|down_0|NC_009767.1_4145377_4146436_+	PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed	NA|288aa|down_1|NC_009767.1_4146791_4147655_+	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|574aa|down_2|NC_009767.1_4147823_4149545_-	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|91aa|down_3|NC_009767.1_4149918_4150191_+	pfam01649, Ribosomal_S20p, Ribosomal protein S20	NA|316aa|down_4|NC_009767.1_4150197_4151145_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|334aa|down_5|NC_009767.1_4151382_4152384_-	cd19087, AKR_AKR12A1_B1_C1, AKR12A, AKR12B,  AKR12C families of aldo-keto reductase (AKR)	NA|575aa|down_6|NC_009767.1_4152861_4154586_+	COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy production and conversion]	NA|464aa|down_7|NC_009767.1_4154692_4156084_-	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|347aa|down_8|NC_009767.1_4156080_4157121_-	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB	NA|152aa|down_9|NC_009767.1_4157117_4157573_-	pfam01584, CheW, CheW-like domain
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	80	4221632-4221723	71	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GCGCAACATCACCATCGCCAACGGACGGAGC	31	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|231aa|up_5|NC_009767.1_4208526_4209219_+,NA|243aa|down_0|NC_009767.1_4222935_4223664_+	NA|287aa|up_9|NC_009767.1_4204025_4204886_-	pfam02517, Abi, CAAX protease self-immunity	NA|481aa|up_8|NC_009767.1_4205223_4206666_+	PRK14338, PRK14338, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|280aa|up_7|NC_009767.1_4206662_4207502_+	pfam02517, Abi, CAAX protease self-immunity	NA|287aa|up_6|NC_009767.1_4207509_4208370_+	sd00006, TPR, Tetratricopeptide repeat	NA|231aa|up_5|NC_009767.1_4208526_4209219_+	NA	NA|460aa|up_4|NC_009767.1_4209215_4210595_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|479aa|up_3|NC_009767.1_4210610_4212047_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|221aa|up_2|NC_009767.1_4213109_4213772_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|309aa|up_1|NC_009767.1_4214229_4215156_-	cd07726, ST1585-like_MBL-fold, uncharacterized subgroup which includes Sulfolobus tokodaii ST1585 protein; MBL-fold metallo hydrolase domain	NA|917aa|up_0|NC_009767.1_4216222_4218973_+	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]	NA|243aa|down_0|NC_009767.1_4222935_4223664_+	NA	NA|93aa|down_1|NC_009767.1_4223822_4224101_-	pfam09821, AAA_assoc_C, C-terminal AAA-associated domain	NA|91aa|down_2|NC_009767.1_4225523_4225796_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|153aa|down_3|NC_009767.1_4227304_4227763_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|298aa|down_4|NC_009767.1_4227778_4228672_+	pfam04471, Mrr_cat, Restriction endonuclease	NA|251aa|down_5|NC_009767.1_4228691_4229444_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|117aa|down_6|NC_009767.1_4229516_4229867_+	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|143aa|down_7|NC_009767.1_4229859_4230288_+	TIGR01951, nusB, transcription antitermination factor NusB	NA|83aa|down_8|NC_009767.1_4230339_4230588_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|333aa|down_9|NC_009767.1_4230718_4231717_+	COG1826, TatA, Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	81	4224432-4224538	72	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GTATCAATGCCCATCGGCTCGAGTGGTTGCAGCAGGA	37	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|231aa|up_7|NC_009767.1_4208526_4209219_+,NA|243aa|up_1|NC_009767.1_4222935_4223664_+,NA	NA|280aa|up_9|NC_009767.1_4206662_4207502_+	pfam02517, Abi, CAAX protease self-immunity	NA|287aa|up_8|NC_009767.1_4207509_4208370_+	sd00006, TPR, Tetratricopeptide repeat	NA|231aa|up_7|NC_009767.1_4208526_4209219_+	NA	NA|460aa|up_6|NC_009767.1_4209215_4210595_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|479aa|up_5|NC_009767.1_4210610_4212047_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|221aa|up_4|NC_009767.1_4213109_4213772_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|309aa|up_3|NC_009767.1_4214229_4215156_-	cd07726, ST1585-like_MBL-fold, uncharacterized subgroup which includes Sulfolobus tokodaii ST1585 protein; MBL-fold metallo hydrolase domain	NA|917aa|up_2|NC_009767.1_4216222_4218973_+	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]	NA|243aa|up_1|NC_009767.1_4222935_4223664_+	NA	NA|93aa|up_0|NC_009767.1_4223822_4224101_-	pfam09821, AAA_assoc_C, C-terminal AAA-associated domain	NA|91aa|down_0|NC_009767.1_4225523_4225796_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|153aa|down_1|NC_009767.1_4227304_4227763_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|298aa|down_2|NC_009767.1_4227778_4228672_+	pfam04471, Mrr_cat, Restriction endonuclease	NA|251aa|down_3|NC_009767.1_4228691_4229444_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|117aa|down_4|NC_009767.1_4229516_4229867_+	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|143aa|down_5|NC_009767.1_4229859_4230288_+	TIGR01951, nusB, transcription antitermination factor NusB	NA|83aa|down_6|NC_009767.1_4230339_4230588_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|333aa|down_7|NC_009767.1_4230718_4231717_+	COG1826, TatA, Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]	NA|312aa|down_8|NC_009767.1_4231729_4232665_+	pfam00902, TatC, Sec-independent protein translocase protein (TatC)	NA|298aa|down_9|NC_009767.1_4232704_4233598_+	pfam07091, FmrO, Ribosomal RNA methyltransferase (FmrO)
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	82	4297314-4312795	13,73,10,14	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	csm3gr7,csx10gr5,cas10,csx1,csx3,cas8b2,cas7,cas5,cas3,cas6,cas1,cas2,cas4	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Type III-D,Type III-C,Type III-B,,Type III-A	ATTTCAGTGCTCTTCTGCGAGCCGAAAAATCGGAAA,TTTCCGATTTTTCGGCTCGCAGAAGAGCACTGAAAT,TTTCCGATTTTTCGGCTCGCAGAAGAGCACTGAAAT,ATTTCAGTGCTCTTCTGCGAGCCGAAAAATCGGAAA	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	210,213,213,210	213	,TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|501aa|down_7|NC_009767.1_4325998_4327501_-,NA|119aa|down_9|NC_009767.1_4329135_4329492_-	csx1|297aa|up_9|NC_009767.1_4285179_4286070_-	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	csx3|392aa|up_8|NC_009767.1_4286213_4287389_+	cd09740, Csx3_III-U, CRISPR/Cas system-associated protein Csx3	cas8b2|502aa|up_7|NC_009767.1_4287699_4289205_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|364aa|up_6|NC_009767.1_4289293_4290385_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|246aa|up_5|NC_009767.1_4290394_4291132_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|780aa|up_4|NC_009767.1_4291109_4293449_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas6|319aa|up_3|NC_009767.1_4293455_4294412_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	cas1|339aa|up_2|NC_009767.1_4295004_4296021_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|86aa|up_1|NC_009767.1_4296100_4296358_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas4|199aa|up_0|NC_009767.1_4296350_4296947_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|398aa|down_0|NC_009767.1_4313547_4314741_-	COG0635, HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]	NA|1004aa|down_1|NC_009767.1_4315114_4318126_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|131aa|down_2|NC_009767.1_4318146_4318539_+	cd17548, REC_DivK-like, phosphoacceptor receiver (REC) domain of DivK and similar proteins	NA|901aa|down_3|NC_009767.1_4318598_4321301_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|114aa|down_4|NC_009767.1_4322169_4322511_-	pfam09413, DUF2007, Putative prokaryotic signal transducing protein	NA|343aa|down_5|NC_009767.1_4322581_4323610_+	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19)	NA|263aa|down_6|NC_009767.1_4323767_4324556_+	cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars	NA|501aa|down_7|NC_009767.1_4325998_4327501_-	NA	NA|471aa|down_8|NC_009767.1_4327692_4329105_+	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated	NA|119aa|down_9|NC_009767.1_4329135_4329492_-	NA
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	83	4439005-4439123	74	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GTGCGAAGGTCTGAAGGTTGTACGTTGAAGGGGAA	35	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|60aa|up_5|NC_009767.1_4434143_4434323_+,NA|96aa|up_4|NC_009767.1_4434534_4434822_-,NA	NA|232aa|up_9|NC_009767.1_4429365_4430061_-	PRK14562, PRK14562, haloacid dehalogenase superfamily protein; Provisional	NA|598aa|up_8|NC_009767.1_4430216_4432010_+	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein	NA|327aa|up_7|NC_009767.1_4432249_4433230_+	pfam01916, DS, Deoxyhypusine synthase	NA|96aa|up_6|NC_009767.1_4433450_4433738_+	pfam13479, AAA_24, AAA domain	NA|60aa|up_5|NC_009767.1_4434143_4434323_+	NA	NA|96aa|up_4|NC_009767.1_4434534_4434822_-	NA	NA|204aa|up_3|NC_009767.1_4435089_4435701_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|358aa|up_2|NC_009767.1_4435703_4436777_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|260aa|up_1|NC_009767.1_4436854_4437634_+	COG0623, FabI, Enoyl-[acyl-carrier-protein]	NA|408aa|up_0|NC_009767.1_4437617_4438841_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|88aa|down_0|NC_009767.1_4439175_4439439_-	PRK13991, PRK13991, cell division topological specificity factor MinE; Provisional	NA|271aa|down_1|NC_009767.1_4439507_4440320_-	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|226aa|down_2|NC_009767.1_4440360_4441038_-	PRK00513, minC, septum formation inhibitor; Reviewed	NA|389aa|down_3|NC_009767.1_4441149_4442316_-	cd00609, AAT_like, Aspartate aminotransferase family	NA|412aa|down_4|NC_009767.1_4442412_4443648_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|370aa|down_5|NC_009767.1_4443655_4444765_+	pfam13646, HEAT_2, HEAT repeats	NA|370aa|down_6|NC_009767.1_4444783_4445893_+	pfam02618, YceG, YceG-like family	NA|284aa|down_7|NC_009767.1_4445877_4446729_+	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed	NA|255aa|down_8|NC_009767.1_4446740_4447505_+	pfam06750, DiS_P_DiS, Bacterial Peptidase A24 N-terminal domain	NA|1192aa|down_9|NC_009767.1_4447619_4451195_+	cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	84	4536243-4536359	75	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CCGCCGCTCTCGGCATCGAGTGGAGGCGACCCGGCGGCTGTT	42	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|138aa|down_3|NC_009767.1_4540228_4540642_+,NA|476aa|down_5|NC_009767.1_4542199_4543627_+	NA|453aa|up_9|NC_009767.1_4524443_4525802_-	pfam13546, DDE_5, DDE superfamily endonuclease	NA|268aa|up_8|NC_009767.1_4526067_4526871_-	PRK14058, PRK14058, [LysW]-aminoadipate/[LysW]-glutamate kinase	NA|502aa|up_7|NC_009767.1_4526867_4528373_-	cd07948, DRE_TIM_HCS, Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain	NA|349aa|up_6|NC_009767.1_4529222_4530269_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|286aa|up_5|NC_009767.1_4530265_4531123_-	TIGR02144, lysine_biosynthesis_enzyme, Lysine biosynthesis enzyme LysX	NA|56aa|up_4|NC_009767.1_4531126_4531294_-	cd13946, LysW, Lysine biosynthesis protein LysW	NA|361aa|up_3|NC_009767.1_4531308_4532391_-	COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]	NA|167aa|up_2|NC_009767.1_4532387_4532888_-	PRK14023, PRK14023, homoaconitate hydratase small subunit; Provisional	NA|373aa|up_1|NC_009767.1_4533112_4534231_-	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|420aa|up_0|NC_009767.1_4534621_4535881_-	PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit; Reviewed	NA|186aa|down_0|NC_009767.1_4538011_4538569_+	PRK00150, def, peptide deformylase; Reviewed	NA|327aa|down_1|NC_009767.1_4538993_4539974_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|66aa|down_2|NC_009767.1_4539999_4540197_+	TIGR01206, lysW, lysine biosynthesis protein LysW	NA|138aa|down_3|NC_009767.1_4540228_4540642_+	NA	NA|445aa|down_4|NC_009767.1_4540638_4541973_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|476aa|down_5|NC_009767.1_4542199_4543627_+	NA	NA|137aa|down_6|NC_009767.1_4543631_4544042_+	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|130aa|down_7|NC_009767.1_4544035_4544425_+	pfam08695, Coa1, Cytochrome oxidase complex assembly protein 1	NA|554aa|down_8|NC_009767.1_4545064_4546726_+	pfam08811, DUF1800, Protein of unknown function (DUF1800)	NA|440aa|down_9|NC_009767.1_4546734_4548054_+	COG4102, COG4102, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	85	4732818-4732890	76	CRISPRCasFinder	no	csa3	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Type I-A	CGTAGCCGGTCGAAGCAATCCCC	23	1	5	4732841-4732867|4732841-4732867|4732841-4732867|4732841-4732867|4732841-4732867	NC_009767.1_4769395-4769421|NC_009767.1_4769494-4769520|NC_009767.1_4769544-4769570|NC_009767.1_4767515-4767541|NC_009767.1_4769444-4769470	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|117aa|up_0|NC_009767.1_4731716_4732067_+,NA|145aa|down_2|NC_009767.1_4734733_4735168_+,NA|230aa|down_8|NC_009767.1_4744243_4744933_+,NA|173aa|down_9|NC_009767.1_4745062_4745581_+	NA|206aa|up_9|NC_009767.1_4723858_4724476_-	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only]	NA|335aa|up_8|NC_009767.1_4724472_4725477_-	COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]	NA|430aa|up_7|NC_009767.1_4725482_4726772_-	pfam01120, Alpha_L_fucos, Alpha-L-fucosidase	NA|319aa|up_6|NC_009767.1_4726806_4727763_-	cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase	NA|245aa|up_5|NC_009767.1_4727794_4728529_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	csa3|123aa|up_4|NC_009767.1_4728975_4729344_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|80aa|up_3|NC_009767.1_4729351_4729591_+	pfam13192, Thioredoxin_3, Thioredoxin domain	NA|352aa|up_2|NC_009767.1_4729683_4730739_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|252aa|up_1|NC_009767.1_4730838_4731594_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|117aa|up_0|NC_009767.1_4731716_4732067_+	NA	NA|220aa|down_0|NC_009767.1_4732991_4733651_-	TIGR02187, glutaredoxin-like_protein, Glutaredoxin-like domain protein	NA|242aa|down_1|NC_009767.1_4733720_4734446_-	TIGR04001, thiol_BshB1, bacillithiol biosynthesis deacetylase BshB1	NA|145aa|down_2|NC_009767.1_4734733_4735168_+	NA	NA|414aa|down_3|NC_009767.1_4735168_4736410_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|233aa|down_4|NC_009767.1_4736488_4737187_-	pfam12158, DUF3592, Protein of unknown function (DUF3592)	NA|398aa|down_5|NC_009767.1_4737674_4738868_+	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|406aa|down_6|NC_009767.1_4738851_4740069_+	cd07361, MEMO_like, Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility	NA|256aa|down_7|NC_009767.1_4740930_4741698_+	pfam08239, SH3_3, Bacterial SH3 domain	NA|230aa|down_8|NC_009767.1_4744243_4744933_+	NA	NA|173aa|down_9|NC_009767.1_4745062_4745581_+	NA
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	86	4767244-4767316	77	CRISPRCasFinder	no	c2c9_V-U4	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Type V-U4	CGCAGCCGGTCGAAGCAATCCCC	23	1	1	4767267-4767293	NC_009767.1_4769345-4769371	NA	1	1	TypeV-U4	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|570aa|up_4|NC_009767.1_4758024_4759734_-,NA|147aa|up_3|NC_009767.1_4759734_4760175_-,NA	NA|397aa|up_9|NC_009767.1_4748790_4749981_-	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|222aa|up_8|NC_009767.1_4750004_4750670_-	pfam07849, DUF1641, Protein of unknown function (DUF1641)	NA|319aa|up_7|NC_009767.1_4751000_4751957_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|323aa|up_6|NC_009767.1_4752272_4753241_-	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|757aa|up_5|NC_009767.1_4755710_4757981_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|570aa|up_4|NC_009767.1_4758024_4759734_-	NA	NA|147aa|up_3|NC_009767.1_4759734_4760175_-	NA	NA|699aa|up_2|NC_009767.1_4760152_4762249_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|356aa|up_1|NC_009767.1_4764580_4765648_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|444aa|up_0|NC_009767.1_4765644_4766976_-	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|479aa|down_0|NC_009767.1_4767573_4769010_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|399aa|down_1|NC_009767.1_4769671_4770868_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|508aa|down_2|NC_009767.1_4770836_4772360_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|385aa|down_3|NC_009767.1_4773405_4774560_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|739aa|down_4|NC_009767.1_4774556_4776773_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|720aa|down_5|NC_009767.1_4776809_4778969_-	smart00060, FN3, Fibronectin type 3 domain	NA|284aa|down_6|NC_009767.1_4779328_4780180_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	c2c9_V-U4|381aa|down_7|NC_009767.1_4780586_4781729_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|194aa|down_8|NC_009767.1_4781792_4782374_-	cd00438, cupin_RmlC, RmlC carbohydrate epimerase, involved in dTDP-L-rhamnose production	NA|138aa|down_9|NC_009767.1_4782628_4783042_-	pfam01934, DUF86, Protein of unknown function DUF86
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	87	4806466-4806576	78	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GGATCGGTCGAGGCGCCCCCCTGTGAGCGCCCGTTCA	37	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|103aa|down_7|NC_009767.1_4818883_4819192_+	NA|209aa|up_9|NC_009767.1_4794595_4795222_+	COG3206, GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]	NA|230aa|up_8|NC_009767.1_4795223_4795913_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|225aa|up_7|NC_009767.1_4795936_4796611_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|128aa|up_6|NC_009767.1_4796835_4797219_+	pfam00072, Response_reg, Response regulator receiver domain	NA|449aa|up_5|NC_009767.1_4797257_4798604_-	TIGR00601, UV_excision_repair_protein_RAD23_homolog_A, UV excision repair protein Rad23	NA|1035aa|up_4|NC_009767.1_4799129_4802234_-	PRK13557, PRK13557, histidine kinase; Provisional	NA|425aa|up_3|NC_009767.1_4802384_4803659_-	PRK07049, PRK07049, cystathionine gamma-synthase family protein	NA|235aa|up_2|NC_009767.1_4803704_4804409_-	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain	NA|341aa|up_1|NC_009767.1_4804691_4805714_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|152aa|up_0|NC_009767.1_4805710_4806166_-	pfam03703, bPH_2, Bacterial PH domain	NA|708aa|down_0|NC_009767.1_4807954_4810078_-	smart01043, BTAD, Bacterial transcriptional activator domain	NA|693aa|down_1|NC_009767.1_4810381_4812460_-	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|293aa|down_2|NC_009767.1_4813195_4814074_+	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs	NA|217aa|down_3|NC_009767.1_4814027_4814678_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|176aa|down_4|NC_009767.1_4814918_4815446_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|244aa|down_5|NC_009767.1_4816202_4816934_+	cd05829, Sortase_F, Sortase domain found in the class F family of sortases	NA|379aa|down_6|NC_009767.1_4817677_4818814_+	cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|103aa|down_7|NC_009767.1_4818883_4819192_+	NA	NA|458aa|down_8|NC_009767.1_4820379_4821753_+	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase	NA|73aa|down_9|NC_009767.1_4822137_4822356_+	COG3177, COG3177, Fic family protein [Function unknown]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	88	4921221-4921421	79	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CTCTCCACAAATGCGAGATAAATCTCGCACTACGCCATTGCCGGGACCC	49	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|64aa|up_7|NC_009767.1_4912421_4912613_-,NA|43aa|down_3|NC_009767.1_4926684_4926813_-,NA|56aa|down_4|NC_009767.1_4926834_4927002_-,NA|148aa|down_6|NC_009767.1_4928594_4929038_+	NA|494aa|up_9|NC_009767.1_4908843_4910325_-	TIGR02014, chlorin_reductase_subunit, chlorophyllide reductase subunit Z	NA|423aa|up_8|NC_009767.1_4910331_4911600_-	cd01980, Chlide_reductase_Y, Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY)	NA|64aa|up_7|NC_009767.1_4912421_4912613_-	NA	NA|244aa|up_6|NC_009767.1_4912702_4913434_-	pfam02596, DUF169, Uncharacterized ArCR, COG2043	NA|393aa|up_5|NC_009767.1_4914720_4915899_-	TIGR02016, Chlorophyllide_reductase_35	NA|324aa|up_4|NC_009767.1_4916365_4917337_-	TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase	NA|161aa|up_3|NC_009767.1_4917349_4917832_-	pfam07284, BCHF, 2-vinyl bacteriochlorophyllide hydratase (BCHF)	NA|282aa|up_2|NC_009767.1_4918125_4918971_+	cd00293, USP_Like, Usp: Universal stress protein family	NA|256aa|up_1|NC_009767.1_4918951_4919719_-	pfam12291, DUF3623, Protein of unknown function (DUF3623)	NA|407aa|up_0|NC_009767.1_4919749_4920970_-	TIGR02023, geranylgeranyl_bacteriochlorophyll_reductase, geranylgeranyl reductase	NA|305aa|down_0|NC_009767.1_4922396_4923311_-	PRK07566, PRK07566, chlorophyll synthase ChlG	NA|321aa|down_1|NC_009767.1_4923455_4924418_-	cd09224, CytoC_RC, Cytochrome C subunit of the bacterial photosynthetic reaction center	NA|642aa|down_2|NC_009767.1_4924517_4926443_-	PRK14505, PRK14505, bifunctional photosynthetic reaction center subunit L/M; Provisional	NA|43aa|down_3|NC_009767.1_4926684_4926813_-	NA	NA|56aa|down_4|NC_009767.1_4926834_4927002_-	NA	NA|334aa|down_5|NC_009767.1_4927505_4928507_+	cd01104, HTH_MlrA-CarA, Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA	NA|148aa|down_6|NC_009767.1_4928594_4929038_+	NA	NA|312aa|down_7|NC_009767.1_4929081_4930017_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|320aa|down_8|NC_009767.1_4931186_4932146_-	pfam04168, Alpha-E, A predicted alpha-helical domain with a conserved ER motif	NA|477aa|down_9|NC_009767.1_4932138_4933569_-	COG2308, COG2308, Uncharacterized conserved protein [Function unknown]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	89	4933705-4933830	80	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CGGGCGCCTGAGCCGAACCGCGCACCGCAAGCCG	34	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|43aa|up_6|NC_009767.1_4926684_4926813_-,NA|56aa|up_5|NC_009767.1_4926834_4927002_-,NA|148aa|up_3|NC_009767.1_4928594_4929038_+,NA|76aa|down_3|NC_009767.1_4936585_4936813_+	NA|305aa|up_9|NC_009767.1_4922396_4923311_-	PRK07566, PRK07566, chlorophyll synthase ChlG	NA|321aa|up_8|NC_009767.1_4923455_4924418_-	cd09224, CytoC_RC, Cytochrome C subunit of the bacterial photosynthetic reaction center	NA|642aa|up_7|NC_009767.1_4924517_4926443_-	PRK14505, PRK14505, bifunctional photosynthetic reaction center subunit L/M; Provisional	NA|43aa|up_6|NC_009767.1_4926684_4926813_-	NA	NA|56aa|up_5|NC_009767.1_4926834_4927002_-	NA	NA|334aa|up_4|NC_009767.1_4927505_4928507_+	cd01104, HTH_MlrA-CarA, Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA	NA|148aa|up_3|NC_009767.1_4928594_4929038_+	NA	NA|312aa|up_2|NC_009767.1_4929081_4930017_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|320aa|up_1|NC_009767.1_4931186_4932146_-	pfam04168, Alpha-E, A predicted alpha-helical domain with a conserved ER motif	NA|477aa|up_0|NC_009767.1_4932138_4933569_-	COG2308, COG2308, Uncharacterized conserved protein [Function unknown]	NA|340aa|down_0|NC_009767.1_4934093_4935113_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|222aa|down_1|NC_009767.1_4935109_4935775_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|276aa|down_2|NC_009767.1_4935777_4936605_+	COG1277, NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]	NA|76aa|down_3|NC_009767.1_4936585_4936813_+	NA	NA|305aa|down_4|NC_009767.1_4937500_4938415_+	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|220aa|down_5|NC_009767.1_4938448_4939108_+	cd16423, HAD_BPGM-like, uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized Bacillus subtilis YhcW	NA|125aa|down_6|NC_009767.1_4939311_4939686_+	pfam03788, LrgA, LrgA family	NA|241aa|down_7|NC_009767.1_4939666_4940389_+	pfam04172, LrgB, LrgB-like family	NA|184aa|down_8|NC_009767.1_4941905_4942457_+	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein	NA|420aa|down_9|NC_009767.1_4942486_4943746_-	cd03784, GT1_Gtf-like, UDP-glycosyltransferases and similar proteins
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	90	4961405-4961505	81	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GATTGCTTCGACCGGCTGCGCTGGT	25	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|223aa|up_0|NC_009767.1_4960364_4961033_+,NA|366aa|down_3|NC_009767.1_4964556_4965654_-,NA|148aa|down_4|NC_009767.1_4965701_4966145_-	NA|163aa|up_9|NC_009767.1_4951451_4951940_+	cd04584, CBS_pair_AcuB_like, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the ACT domain	NA|296aa|up_8|NC_009767.1_4952172_4953060_-	cd07911, RNRR2_Rv0233_like, Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain	NA|324aa|up_7|NC_009767.1_4953056_4954028_-	TIGR03339, phn_lysR, aminoethylphosphonate catabolism associated LysR family transcriptional regulator	NA|375aa|up_6|NC_009767.1_4954066_4955191_-	TIGR00378, cax, calcium/proton exchanger (cax)	NA|185aa|up_5|NC_009767.1_4955217_4955772_+	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only]	NA|393aa|up_4|NC_009767.1_4955815_4956994_+	cd00249, AGE, AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid	NA|252aa|up_3|NC_009767.1_4956937_4957693_-	COG1922, WecG, Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]	NA|590aa|up_2|NC_009767.1_4957811_4959581_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|189aa|up_1|NC_009767.1_4959602_4960169_+	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase	NA|223aa|up_0|NC_009767.1_4960364_4961033_+	NA	NA|198aa|down_0|NC_009767.1_4961936_4962530_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|198aa|down_1|NC_009767.1_4962726_4963320_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|363aa|down_2|NC_009767.1_4963329_4964418_-	cd08883, RHO_alpha_C_CMO-like, C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases	NA|366aa|down_3|NC_009767.1_4964556_4965654_-	NA	NA|148aa|down_4|NC_009767.1_4965701_4966145_-	NA	NA|152aa|down_5|NC_009767.1_4966144_4966600_-	pfam00115, COX1, Cytochrome C and Quinol oxidase polypeptide I	NA|353aa|down_6|NC_009767.1_4967037_4968096_-	cd02197, HypE, HypE (Hydrogenase expression/formation protein)	NA|372aa|down_7|NC_009767.1_4968092_4969208_-	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional	NA|90aa|down_8|NC_009767.1_4969204_4969474_-	pfam01455, HupF_HypC, HupF/HypC family	NA|368aa|down_9|NC_009767.1_4969543_4970647_-	cd05819, NHL, NHL repeat unit of beta-propeller proteins
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	91	5018500-5018608	82	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GCATTCTGATGATCAAAAACGGGCGATTCAATACAAG	37	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|192aa|up_2|NC_009767.1_5015623_5016199_-,NA|295aa|up_1|NC_009767.1_5016208_5017093_-,NA|129aa|up_0|NC_009767.1_5017526_5017913_-,NA|72aa|down_0|NC_009767.1_5018751_5018967_-	NA|359aa|up_9|NC_009767.1_5004406_5005483_-	PRK05382, PRK05382, chorismate synthase; Validated	NA|465aa|up_8|NC_009767.1_5005502_5006897_-	sd00006, TPR, Tetratricopeptide repeat	NA|534aa|up_7|NC_009767.1_5006920_5008522_-	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]	NA|733aa|up_6|NC_009767.1_5008784_5010983_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|855aa|up_5|NC_009767.1_5011136_5013701_-	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|273aa|up_4|NC_009767.1_5013807_5014626_-	pfam13485, Peptidase_MA_2, Peptidase MA superfamily	NA|284aa|up_3|NC_009767.1_5014806_5015658_+	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|192aa|up_2|NC_009767.1_5015623_5016199_-	NA	NA|295aa|up_1|NC_009767.1_5016208_5017093_-	NA	NA|129aa|up_0|NC_009767.1_5017526_5017913_-	NA	NA|72aa|down_0|NC_009767.1_5018751_5018967_-	NA	NA|282aa|down_1|NC_009767.1_5019818_5020664_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|317aa|down_2|NC_009767.1_5020707_5021658_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|569aa|down_3|NC_009767.1_5021677_5023384_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|440aa|down_4|NC_009767.1_5023604_5024924_-	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|244aa|down_5|NC_009767.1_5024920_5025652_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|575aa|down_6|NC_009767.1_5025973_5027698_+	cd08492, PBP2_NikA_DppA_OppA_like_15, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|308aa|down_7|NC_009767.1_5027898_5028822_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|down_8|NC_009767.1_5028859_5029729_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|389aa|down_9|NC_009767.1_5029784_5030951_+	cd03325, D-galactonate_dehydratase, D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactonate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	92	5059129-5059236	83	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	TGCTTGTCTCTGTGCGCCATACGCGCCTATTCGCAC	36	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|156aa|down_5|NC_009767.1_5068543_5069011_-	NA|332aa|up_9|NC_009767.1_5041586_5042582_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|359aa|up_8|NC_009767.1_5042688_5043765_+	pfam13546, DDE_5, DDE superfamily endonuclease	NA|471aa|up_7|NC_009767.1_5044426_5045839_+	TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase	NA|467aa|up_6|NC_009767.1_5046413_5047814_-	pfam08378, NERD, Nuclease-related domain	NA|542aa|up_5|NC_009767.1_5048025_5049651_-	cd11331, AmyAc_OligoGlu_like, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins	NA|659aa|up_4|NC_009767.1_5050358_5052335_+	pfam13598, DUF4139, Domain of unknown function (DUF4139)	NA|861aa|up_3|NC_009767.1_5052568_5055151_-	TIGR03663, TIGR03663, TIGR03663 family protein	NA|356aa|up_2|NC_009767.1_5056063_5057131_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|284aa|up_1|NC_009767.1_5057441_5058293_+	COG0434, SgcQ, Predicted TIM-barrel enzyme [General function prediction only]	NA|243aa|up_0|NC_009767.1_5058343_5059072_+	PRK09135, PRK09135, pteridine reductase; Provisional	NA|721aa|down_0|NC_009767.1_5060090_5062253_+	pfam01642, MM_CoA_mutase, Methylmalonyl-CoA mutase	NA|741aa|down_1|NC_009767.1_5062249_5064472_+	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed	NA|381aa|down_2|NC_009767.1_5064468_5065611_+	PRK09435, PRK09435, methylmalonyl Co-A mutase-associated GTPase MeaB	NA|267aa|down_3|NC_009767.1_5066244_5067045_+	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|500aa|down_4|NC_009767.1_5067111_5068611_+	TIGR03491, TIGR03491, RecB family nuclease, putative, TM0106 family	NA|156aa|down_5|NC_009767.1_5068543_5069011_-	NA	NA|118aa|down_6|NC_009767.1_5069014_5069368_-	pfam06170, DUF983, Protein of unknown function (DUF983)	NA|1209aa|down_7|NC_009767.1_5070126_5073753_+	TIGR02082, Methionine_synthase, 5-methyltetrahydrofolate--homocysteine methyltransferase	NA|392aa|down_8|NC_009767.1_5073842_5075018_+	pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain	NA|237aa|down_9|NC_009767.1_5075133_5075844_+	cd05334, DHPR_SDR_c_like, dihydropteridine reductase (DHPR), classical (c) SDRs
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	93	5069652-5069801	84	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GACACGAAGGACATGCGCTGCATGTTCATTCCCCTTCGTGCGCTTCGGGTCC	52	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|156aa|up_1|NC_009767.1_5068543_5069011_-,NA|766aa|down_7|NC_009767.1_5082543_5084841_+	NA|284aa|up_9|NC_009767.1_5057441_5058293_+	COG0434, SgcQ, Predicted TIM-barrel enzyme [General function prediction only]	NA|243aa|up_8|NC_009767.1_5058343_5059072_+	PRK09135, PRK09135, pteridine reductase; Provisional	NA|159aa|up_7|NC_009767.1_5059226_5059703_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|721aa|up_6|NC_009767.1_5060090_5062253_+	pfam01642, MM_CoA_mutase, Methylmalonyl-CoA mutase	NA|741aa|up_5|NC_009767.1_5062249_5064472_+	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed	NA|381aa|up_4|NC_009767.1_5064468_5065611_+	PRK09435, PRK09435, methylmalonyl Co-A mutase-associated GTPase MeaB	NA|267aa|up_3|NC_009767.1_5066244_5067045_+	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|500aa|up_2|NC_009767.1_5067111_5068611_+	TIGR03491, TIGR03491, RecB family nuclease, putative, TM0106 family	NA|156aa|up_1|NC_009767.1_5068543_5069011_-	NA	NA|118aa|up_0|NC_009767.1_5069014_5069368_-	pfam06170, DUF983, Protein of unknown function (DUF983)	NA|1209aa|down_0|NC_009767.1_5070126_5073753_+	TIGR02082, Methionine_synthase, 5-methyltetrahydrofolate--homocysteine methyltransferase	NA|392aa|down_1|NC_009767.1_5073842_5075018_+	pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain	NA|237aa|down_2|NC_009767.1_5075133_5075844_+	cd05334, DHPR_SDR_c_like, dihydropteridine reductase (DHPR), classical (c) SDRs	NA|286aa|down_3|NC_009767.1_5076138_5076996_-	PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional	NA|425aa|down_4|NC_009767.1_5077244_5078519_+	COG3693, XynA, Beta-1,4-xylanase [Carbohydrate transport and metabolism]	NA|883aa|down_5|NC_009767.1_5078460_5081109_-	PRK13837, PRK13837, two-component system VirA-like sensor kinase	NA|360aa|down_6|NC_009767.1_5081312_5082392_-	cd03798, GT4_WlbH-like, Bordetella parapertussis WlbH and similar proteins	NA|766aa|down_7|NC_009767.1_5082543_5084841_+	NA	NA|587aa|down_8|NC_009767.1_5085329_5087090_+	pfam09852, DUF2079, Predicted membrane protein (DUF2079)	NA|723aa|down_9|NC_009767.1_5089464_5091633_+	pfam10131, PTPS_related, 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	94	5118394-5118500	85	CRISPRCasFinder	no	cmr5gr11,cas10,cmr6gr7,DEDDh	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Type III-B,Type III-C,Type III-D,Type III-A	GGTGTCATTGCGAGCGCAGCGAAGCAATCTCCTCATC	37	0	0	NA	NA	NA	1	1	TypeIII-B,TypeIII-C,TypeIII-D,TypeIII-A	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|209aa|up_9|NC_009767.1_5108863_5109490_+,NA|144aa|up_8|NC_009767.1_5109579_5110011_+,NA|195aa|up_4|NC_009767.1_5112575_5113160_+,NA|203aa|up_3|NC_009767.1_5113402_5114011_-,NA|290aa|up_2|NC_009767.1_5114140_5115010_-,cmr5gr11|133aa|down_2|NC_009767.1_5120180_5120579_-	NA|209aa|up_9|NC_009767.1_5108863_5109490_+	NA	NA|144aa|up_8|NC_009767.1_5109579_5110011_+	NA	NA|273aa|up_7|NC_009767.1_5110020_5110839_+	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|327aa|up_6|NC_009767.1_5110819_5111800_+	PRK08618, PRK08618, ornithine cyclodeaminase family protein	NA|168aa|up_5|NC_009767.1_5111969_5112473_-	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor	NA|195aa|up_4|NC_009767.1_5112575_5113160_+	NA	NA|203aa|up_3|NC_009767.1_5113402_5114011_-	NA	NA|290aa|up_2|NC_009767.1_5114140_5115010_-	NA	NA|278aa|up_1|NC_009767.1_5115251_5116085_-	PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional	NA|647aa|up_0|NC_009767.1_5116430_5118371_+	cd11352, AmyAc_5, Alpha amylase catalytic domain found in an uncharacterized protein family	NA|141aa|down_0|NC_009767.1_5118535_5118958_+	pfam13646, HEAT_2, HEAT repeats	NA|235aa|down_1|NC_009767.1_5119109_5119814_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	cmr5gr11|133aa|down_2|NC_009767.1_5120180_5120579_-	NA	cas10|91aa|down_3|NC_009767.1_5120608_5120881_-	cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10	NA|128aa|down_4|NC_009767.1_5120889_5121273_-	pfam05168, HEPN, HEPN domain	NA|118aa|down_5|NC_009767.1_5121259_5121613_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	cmr6gr7|167aa|down_6|NC_009767.1_5121749_5122250_-	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	NA|220aa|down_7|NC_009767.1_5122472_5123132_-	TIGR01894, hypothetical_protein, CRISPR type III-B/RAMP module RAMP protein Cmr1	NA|264aa|down_8|NC_009767.1_5123519_5124311_+	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|177aa|down_9|NC_009767.1_5124400_5124931_+	PRK12332, tsf, elongation factor Ts; Reviewed
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	95	5260396-5260499	86	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CCTGCCCCGCTCCTGCACGCGGGAGCGGGGAGTCCGA	37	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|170aa|up_3|NC_009767.1_5253998_5254508_-,NA|137aa|up_1|NC_009767.1_5255527_5255938_-,NA	NA|302aa|up_9|NC_009767.1_5245819_5246725_+	cd10935, CE4_WalW, Putative catalytic domain of lipopolysaccharide biosynthesis protein WalW and its bacterial homologs	NA|969aa|up_8|NC_009767.1_5246737_5249644_+	pfam02687, FtsX, FtsX-like permease family	NA|188aa|up_7|NC_009767.1_5249729_5250293_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|883aa|up_6|NC_009767.1_5250348_5252997_+	cd10914, Peptidase_C25_N_1, uncharacterized subgroup of the Peptidase C25 family N-terminal domain	NA|150aa|up_5|NC_009767.1_5253454_5253904_+	pfam05685, Uma2, Putative restriction endonuclease	NA|84aa|up_4|NC_009767.1_5253825_5254077_+	pfam05685, Uma2, Putative restriction endonuclease	NA|170aa|up_3|NC_009767.1_5253998_5254508_-	NA	NA|276aa|up_2|NC_009767.1_5254695_5255523_+	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism]	NA|137aa|up_1|NC_009767.1_5255527_5255938_-	NA	NA|1193aa|up_0|NC_009767.1_5256430_5260009_+	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	NA|433aa|down_0|NC_009767.1_5260698_5261997_+	cd17328, MFS_spinster_like, Protein spinster and spinster homologs of the Major Facilitator Superfamily of transporters	NA|488aa|down_1|NC_009767.1_5262287_5263751_+	cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM	NA|247aa|down_2|NC_009767.1_5265332_5266073_+	cd02549, Peptidase_C39A, A sub-family of peptidase family C39	NA|110aa|down_3|NC_009767.1_5266467_5266797_+	pfam02617, ClpS, ATP-dependent Clp protease adaptor protein ClpS	NA|357aa|down_4|NC_009767.1_5266802_5267873_-	cd03408, SPFH_like_u1, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|270aa|down_5|NC_009767.1_5268170_5268980_-	cd04241, AAK_FomA-like, AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms	NA|328aa|down_6|NC_009767.1_5269612_5270596_-	PRK12324, PRK12324, decaprenyl-phosphate phosphoribosyltransferase	NA|205aa|down_7|NC_009767.1_5270726_5271341_+	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|554aa|down_8|NC_009767.1_5271337_5272999_+	pfam04411, PDDEXK_7, PD-(D/E)XK nuclease superfamily	NA|698aa|down_9|NC_009767.1_5273054_5275148_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	96	5302325-5302413	87	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CACGCTTATGAGGGATGGTCAAG	23	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|119aa|down_6|NC_009767.1_5311439_5311796_-	NA|215aa|up_9|NC_009767.1_5293726_5294371_+	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type	NA|285aa|up_8|NC_009767.1_5294432_5295287_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|76aa|up_7|NC_009767.1_5295449_5295677_+	pfam09723, Zn-ribbon_8, Zinc ribbon domain	NA|332aa|up_6|NC_009767.1_5295696_5296692_+	TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form	NA|378aa|up_5|NC_009767.1_5296711_5297845_+	COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism]	NA|363aa|up_4|NC_009767.1_5297789_5298878_-	TIGR02442, Uncharacterized_protein_Rv2850c/MT2916, cobaltochelatase subunit	NA|95aa|up_3|NC_009767.1_5298886_5299171_-	pfam04456, DUF503, Protein of unknown function (DUF503)	NA|234aa|up_2|NC_009767.1_5299189_5299891_-	pfam02190, LON_substr_bdg, ATP-dependent protease La (LON) substrate-binding domain	NA|398aa|up_1|NC_009767.1_5299894_5301088_-	cd02152, OAT, Ornithine acetyltransferase (OAT) family; also referred to as ArgJ	NA|397aa|up_0|NC_009767.1_5301094_5302285_-	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA|228aa|down_0|NC_009767.1_5302430_5303114_-	pfam07385, Lyx_isomer, D-lyxose isomerase	NA|254aa|down_1|NC_009767.1_5303115_5303877_-	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|1023aa|down_2|NC_009767.1_5303901_5306970_-	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|388aa|down_3|NC_009767.1_5307034_5308198_-	pfam13535, ATP-grasp_4, ATP-grasp domain	NA|299aa|down_4|NC_009767.1_5309133_5310030_-	COG3865, COG3865, Uncharacterized protein conserved in bacteria [Function unknown]	NA|417aa|down_5|NC_009767.1_5310217_5311468_+	cd17388, MFS_TetA, Tetracycline resistance protein TetA and related proteins of the Major Facilitator Superfamily of transporters	NA|119aa|down_6|NC_009767.1_5311439_5311796_-	NA	NA|121aa|down_7|NC_009767.1_5311810_5312173_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|148aa|down_8|NC_009767.1_5312278_5312722_-	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|155aa|down_9|NC_009767.1_5312725_5313190_-	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	97	5342118-5342209	88	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CAAGCGGCGAGCGGTGCGAAGGTGAA	26	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA|316aa|down_5|NC_009767.1_5348251_5349199_+,NA|118aa|down_7|NC_009767.1_5351523_5351877_+	NA|668aa|up_9|NC_009767.1_5329317_5331321_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|459aa|up_8|NC_009767.1_5331454_5332831_+	PRK10885, cca, multifunctional CCA addition/repair protein	NA|150aa|up_7|NC_009767.1_5332922_5333372_+	cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)	NA|297aa|up_6|NC_009767.1_5333562_5334453_+	cd07336, M48B_HtpX_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase	NA|229aa|up_5|NC_009767.1_5334716_5335403_+	PRK00043, thiE, thiamine phosphate synthase	NA|271aa|up_4|NC_009767.1_5335475_5336288_+	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|175aa|up_3|NC_009767.1_5336537_5337062_+	pfam09512, ThiW, Thiamine-precursor transporter protein (ThiW)	NA|527aa|up_2|NC_009767.1_5337058_5338639_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|220aa|up_1|NC_009767.1_5340642_5341302_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|267aa|up_0|NC_009767.1_5341312_5342113_+	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|118aa|down_0|NC_009767.1_5342466_5342820_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|135aa|down_1|NC_009767.1_5342797_5343202_+	pfam05168, HEPN, HEPN domain	NA|558aa|down_2|NC_009767.1_5343215_5344889_-	TIGR02800, Protein_TolB, tol-pal system beta propeller repeat protein TolB	NA|290aa|down_3|NC_009767.1_5345128_5345998_+	PLN02578, PLN02578, hydrolase	NA|678aa|down_4|NC_009767.1_5346010_5348044_+	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|316aa|down_5|NC_009767.1_5348251_5349199_+	NA	NA|542aa|down_6|NC_009767.1_5349593_5351219_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|118aa|down_7|NC_009767.1_5351523_5351877_+	NA	NA|651aa|down_8|NC_009767.1_5352338_5354291_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|432aa|down_9|NC_009767.1_5355177_5356473_-	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	98	5453094-5453319	11	CRT	no	cmr1gr7	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Type III-B, Type III-C?	NNNNNNNGGCGCGAGGGGCCCGACCATGGCGTAGCGCGAGATT	43	3	35	5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453130-5453157|5453194-5453227|5453194-5453227|5453194-5453227|5453194-5453227|5453264-5453283	NC_009767.1_4740219-4740246|NC_009767.1_5451963-5451990|NC_009767.1_5452683-5452710|NC_009767.1_5452823-5452850|NC_009767.1_3573684-3573657|NC_009767.1_1948406-1948433|NC_009767.1_3468551-3468578|NC_009767.1_3468730-3468757|NC_009767.1_3468909-3468936|NC_009767.1_3469025-3469052|NC_009767.1_3469141-3469168|NC_009767.1_3469373-3469400|NC_009767.1_4709676-4709703|NC_009767.1_4709935-4709962|NC_009767.1_4711293-4711320|NC_009767.1_4740302-4740329|NC_009767.1_5263788-5263815|NC_009767.1_25058-25031|NC_009767.1_3574252-3574225|NC_009767.1_4329919-4329892|NC_009767.1_4330079-4330052|NC_009767.1_4330768-4330741|NC_009767.1_4331109-4331082|NC_009767.1_4668426-4668399|NC_009767.1_4668606-4668579|NC_009767.1_4913658-4913631|NC_009767.1_4913820-4913793|NC_009767.1_4921475-4921448|NC_009767.1_4921848-4921821|NC_009767.1_4922202-4922175|NC_009767.1_5451822-5451855|NC_009767.1_5452424-5452457|NC_009767.1_5452550-5452583|NC_009767.1_5452620-5452653|NC_009767.1_5453320-5453339	NA	3	3	TypeIII-B,TypeIII-C?	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|377aa|up_1|NC_009767.1_5449501_5450632_-,NA|100aa|down_5|NC_009767.1_5461270_5461570_-	NA|742aa|up_9|NC_009767.1_5439743_5441969_+	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	NA|121aa|up_8|NC_009767.1_5442040_5442403_+	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains	NA|378aa|up_7|NC_009767.1_5442583_5443717_+	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB	NA|486aa|up_6|NC_009767.1_5444052_5445510_+	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|362aa|up_5|NC_009767.1_5445516_5446602_+	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|523aa|up_4|NC_009767.1_5446723_5448292_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|145aa|up_3|NC_009767.1_5448313_5448748_+	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|111aa|up_2|NC_009767.1_5448749_5449082_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|377aa|up_1|NC_009767.1_5449501_5450632_-	NA	NA|210aa|up_0|NC_009767.1_5450828_5451458_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|487aa|down_0|NC_009767.1_5453612_5455073_+	TIGR00543, Salicylate_biosynthesis_isochorismate_synthase, isochorismate synthases	NA|581aa|down_1|NC_009767.1_5455438_5457181_+	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated	NA|288aa|down_2|NC_009767.1_5457279_5458143_+	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated	NA|492aa|down_3|NC_009767.1_5458139_5459615_+	PRK03640, PRK03640, o-succinylbenzoate--CoA ligase	NA|311aa|down_4|NC_009767.1_5459899_5460832_-	cd05155, APH_ChoK_like_1, Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase and Choline kinase	NA|100aa|down_5|NC_009767.1_5461270_5461570_-	NA	NA|290aa|down_6|NC_009767.1_5461817_5462687_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|213aa|down_7|NC_009767.1_5462973_5463612_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|171aa|down_8|NC_009767.1_5464243_5464756_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|254aa|down_9|NC_009767.1_5464795_5465557_-	pfam02517, Abi, CAAX protease self-immunity
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	99	5473188-5473289	89	CRISPRCasFinder	no	cmr1gr7,cmr3gr5,cmr5gr11,cmr4gr7,cas10,cmr6gr7,csm3gr7	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Type III-D, Type III-C?,Type III-B,Type III-C,Type III-A	ACAGTTCTCGATCACTTTGTCCATCTTAC	29	0	0	NA	NA	NA	1	1	TypeIII-D,TypeIII-C?,TypeIII-B,TypeIII-C,TypeIII-A	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|99aa|up_4|NC_009767.1_5470243_5470540_+,NA|101aa|up_0|NC_009767.1_5472682_5472985_-,NA|56aa|down_3|NC_009767.1_5477132_5477300_+,cmr5gr11|130aa|down_5|NC_009767.1_5478328_5478718_-,NA|235aa|down_9|NC_009767.1_5483806_5484511_-	NA|171aa|up_9|NC_009767.1_5464243_5464756_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|254aa|up_8|NC_009767.1_5464795_5465557_-	pfam02517, Abi, CAAX protease self-immunity	NA|709aa|up_7|NC_009767.1_5465676_5467803_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|214aa|up_6|NC_009767.1_5467729_5468371_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|127aa|up_5|NC_009767.1_5469866_5470247_+	cd17535, REC_NarL-like, phosphoacceptor receiver (REC) domain of NarL (Nitrate/Nitrite response regulator L) family response regulators	NA|99aa|up_4|NC_009767.1_5470243_5470540_+	NA	NA|203aa|up_3|NC_009767.1_5470546_5471155_+	pfam06736, DUF1211, Protein of unknown function (DUF1211)	NA|215aa|up_2|NC_009767.1_5471338_5471983_-	cd11297, PIN_LabA-like_N_1, uncharacterized subfamily of N-terminal LabA-like PIN domains	cmr1gr7|220aa|up_1|NC_009767.1_5471901_5472561_-	pfam03787, RAMPs, RAMP superfamily	NA|101aa|up_0|NC_009767.1_5472682_5472985_-	NA	NA|153aa|down_0|NC_009767.1_5474274_5474733_-	cd06661, GGCT_like, GGCT-like domains, also called AIG2-like family	NA|225aa|down_1|NC_009767.1_5475350_5476025_-	pfam14103, DUF4276, Domain of unknown function (DUF4276)	NA|371aa|down_2|NC_009767.1_5476021_5477134_-	COG4637, COG4637, Predicted ATPase [General function prediction only]	NA|56aa|down_3|NC_009767.1_5477132_5477300_+	NA	cmr3gr5|276aa|down_4|NC_009767.1_5477490_5478318_-	pfam03787, RAMPs, RAMP superfamily	cmr5gr11|130aa|down_5|NC_009767.1_5478328_5478718_-	NA	cmr4gr7|329aa|down_6|NC_009767.1_5478707_5479694_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cas10|930aa|down_7|NC_009767.1_5479704_5482494_-	cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr6gr7|440aa|down_8|NC_009767.1_5482490_5483810_-	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	NA|235aa|down_9|NC_009767.1_5483806_5484511_-	NA
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	100	5485359-5485463	90	CRISPRCasFinder	no	cmr1gr7,cmr3gr5,cmr5gr11,cmr4gr7,cas10,cmr6gr7,csm3gr7	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Type III-D, Type III-C?,Type III-B,Type III-C,Type III-A	GTGTCGGTGCGGCGGTGGTCGTGTCGGTGG	30	1	1	5485389-5485433	NC_009767.1_5485500-5485544	NA	1	1	TypeIII-D,TypeIII-C?,TypeIII-B,TypeIII-C,TypeIII-A	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|56aa|up_6|NC_009767.1_5477132_5477300_+,cmr5gr11|130aa|up_4|NC_009767.1_5478328_5478718_-,NA|235aa|up_0|NC_009767.1_5483806_5484511_-,NA	NA|153aa|up_9|NC_009767.1_5474274_5474733_-	cd06661, GGCT_like, GGCT-like domains, also called AIG2-like family	NA|225aa|up_8|NC_009767.1_5475350_5476025_-	pfam14103, DUF4276, Domain of unknown function (DUF4276)	NA|371aa|up_7|NC_009767.1_5476021_5477134_-	COG4637, COG4637, Predicted ATPase [General function prediction only]	NA|56aa|up_6|NC_009767.1_5477132_5477300_+	NA	cmr3gr5|276aa|up_5|NC_009767.1_5477490_5478318_-	pfam03787, RAMPs, RAMP superfamily	cmr5gr11|130aa|up_4|NC_009767.1_5478328_5478718_-	NA	cmr4gr7|329aa|up_3|NC_009767.1_5478707_5479694_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cas10|930aa|up_2|NC_009767.1_5479704_5482494_-	cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr6gr7|440aa|up_1|NC_009767.1_5482490_5483810_-	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	NA|235aa|up_0|NC_009767.1_5483806_5484511_-	NA	csm3gr7|357aa|down_0|NC_009767.1_5486120_5487191_-	TIGR01894, hypothetical_protein, CRISPR type III-B/RAMP module RAMP protein Cmr1	NA|594aa|down_1|NC_009767.1_5488067_5489849_-	cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)	NA|151aa|down_2|NC_009767.1_5489845_5490298_-	pfam00875, DNA_photolyase, DNA photolyase	NA|318aa|down_3|NC_009767.1_5490620_5491574_-	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924	NA|271aa|down_4|NC_009767.1_5491581_5492394_-	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]	NA|70aa|down_5|NC_009767.1_5492438_5492648_-	pfam10013, DUF2256, Uncharacterized protein conserved in bacteria (DUF2256)	NA|509aa|down_6|NC_009767.1_5492719_5494246_-	COG3046, COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]	NA|171aa|down_7|NC_009767.1_5495502_5496015_+	TIGR03847, TIGR03847, conserved hypothetical protein	NA|244aa|down_8|NC_009767.1_5496016_5496748_+	TIGR03843, Phosphatidylinositol_3-_and_4-kinase, conserved hypothetical protein	NA|468aa|down_9|NC_009767.1_5496934_5498338_+	PLN02852, PLN02852, ferredoxin-NADP+ reductase
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	101	5636351-5636452	91	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	GCGGCATCCATCGCGTGGAGGTGACATCGTT	31	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA|75aa|up_3|NC_009767.1_5634235_5634460_+,NA|76aa|up_1|NC_009767.1_5634986_5635214_+,NA|62aa|down_2|NC_009767.1_5640127_5640313_-,NA|54aa|down_4|NC_009767.1_5640877_5641039_-,NA|47aa|down_6|NC_009767.1_5642557_5642698_-	NA|363aa|up_9|NC_009767.1_5625564_5626653_-	cd01149, HutB, Hemin binding protein HutB	NA|272aa|up_8|NC_009767.1_5626633_5627449_-	PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional	NA|204aa|up_7|NC_009767.1_5627846_5628458_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|429aa|up_6|NC_009767.1_5628514_5629801_-	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|524aa|up_5|NC_009767.1_5629821_5631393_-	PRK09255, PRK09255, malate synthase; Validated	NA|105aa|up_4|NC_009767.1_5632635_5632950_-	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|75aa|up_3|NC_009767.1_5634235_5634460_+	NA	NA|139aa|up_2|NC_009767.1_5634449_5634866_+	COG1569, COG1569, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|76aa|up_1|NC_009767.1_5634986_5635214_+	NA	NA|121aa|up_0|NC_009767.1_5635203_5635566_+	cd18753, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|289aa|down_0|NC_009767.1_5636810_5637677_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|743aa|down_1|NC_009767.1_5637821_5640050_-	cd02767, MopB_ydeP, The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site	NA|62aa|down_2|NC_009767.1_5640127_5640313_-	NA	NA|123aa|down_3|NC_009767.1_5640512_5640881_-	cd07344, M48_yhfN_like, Peptidase M48 YhfN-like, a novel minigluzincin	NA|54aa|down_4|NC_009767.1_5640877_5641039_-	NA	NA|394aa|down_5|NC_009767.1_5641244_5642426_+	COG4277, COG4277, Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]	NA|47aa|down_6|NC_009767.1_5642557_5642698_-	NA	NA|360aa|down_7|NC_009767.1_5642909_5643989_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|205aa|down_8|NC_009767.1_5644019_5644634_+	pfam01025, GrpE, GrpE	NA|616aa|down_9|NC_009767.1_5644626_5646474_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional
GCF_000017805.1_ASM1780v1	NC_009767	Roseiflexus castenholzii DSM 13941, complete genome	102	5675546-5675637	92	CRISPRCasFinder	no		csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	Orphan	CCTTAAACACACGGAGGTGGGGGG	24	0	0	NA	NA	NA	1	1	Orphan	csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas3,cas7,WYL,cas5,DinG,cas4,PD-DExK,csm4gr5,csm5gr7,csx1,cas1,cas2,Cas9_archaeal,c2c9_V-U4,csa3,RT,csx15,csx3,cas8b2,cmr5gr11,cmr6gr7,DEDDh,cmr1gr7,cmr3gr5,cmr4gr7	NA,NA	NA|569aa|up_9|NC_009767.1_5660361_5662068_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|361aa|up_8|NC_009767.1_5662149_5663232_+	sd00006, TPR, Tetratricopeptide repeat	NA|488aa|up_7|NC_009767.1_5663228_5664692_+	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]	NA|788aa|up_6|NC_009767.1_5665140_5667504_+	cd11297, PIN_LabA-like_N_1, uncharacterized subfamily of N-terminal LabA-like PIN domains	NA|213aa|up_5|NC_009767.1_5667526_5668165_+	cd00405, PRAI, Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)	NA|461aa|up_4|NC_009767.1_5668169_5669552_+	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain	NA|122aa|up_3|NC_009767.1_5669718_5670084_+	COG2835, COG2835, Uncharacterized conserved protein [Function unknown]	NA|262aa|up_2|NC_009767.1_5670213_5670999_+	COG2981, CysZ, Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]	NA|349aa|up_1|NC_009767.1_5671756_5672803_+	cd13569, PBP2_TAXI_TRAP_like_1, Substrate binding domain of putative TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|762aa|up_0|NC_009767.1_5673060_5675346_+	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein	NA|1044aa|down_0|NC_009767.1_5676479_5679611_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|576aa|down_1|NC_009767.1_5680113_5681841_+	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|435aa|down_2|NC_009767.1_5682247_5683552_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|324aa|down_3|NC_009767.1_5684674_5685646_-	cd19090, AKR_AKR15A-like, AKR15A family of aldo-keto reductase and similar proteins	NA|418aa|down_4|NC_009767.1_5686363_5687617_-	COG2311, COG2311, Predicted membrane protein [Function unknown]	NA|1056aa|down_5|NC_009767.1_5688341_5691509_+	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|189aa|down_6|NC_009767.1_5691649_5692216_+	pfam04264, YceI, YceI-like domain	NA|693aa|down_7|NC_009767.1_5692163_5694242_-	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|621aa|down_8|NC_009767.1_5694241_5696104_-	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|232aa|down_9|NC_009767.1_5696450_5697146_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
